BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047813
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6TAQ6|HOX10_ORYSJ Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp.
japonica GN=HOX10 PE=2 SV=1
Length = 839
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK-LANGNSKAPNNIPDLN 59
++ +N KL N +M+ENERL+K+ L EN + +L+ LAN S
Sbjct: 92 LQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQQLQNTPLANDTS---------- 141
Query: 60 LCSSSNTNPSN 70
C S+ T P N
Sbjct: 142 -CESNVTTPQN 151
>sp|A2XBL9|HOX10_ORYSI Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. indica
GN=HOX10 PE=2 SV=2
Length = 839
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK-LANGNSKAPNNIPDLN 59
++ +N KL N +M+ENERL+K+ L EN + +L+ LAN S
Sbjct: 92 LQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQQLQNTPLANDTS---------- 141
Query: 60 LCSSSNTNPSN 70
C S+ T P N
Sbjct: 142 -CESNVTTPQN 151
>sp|A2Z8L4|HOX9_ORYSI Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica
GN=HOX9 PE=2 SV=2
Length = 840
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 16/73 (21%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLAN---GNSKAPNNIPD 57
++ +N KL N +M+ENERL+K+ L EN + +KQ+L N GN +
Sbjct: 94 LQAVNRKLTAMNKLLMEENERLQKQVSQLVHEN----AYMKQQLQNPSLGNDTS------ 143
Query: 58 LNLCSSSNTNPSN 70
C S+ T P N
Sbjct: 144 ---CESNVTTPQN 153
>sp|Q9AV49|HOX9_ORYSJ Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp.
japonica GN=HOX9 PE=2 SV=1
Length = 840
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 16/73 (21%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLAN---GNSKAPNNIPD 57
++ +N KL N +M+ENERL+K+ L EN + +KQ+L N GN +
Sbjct: 94 LQAVNRKLTAMNKLLMEENERLQKQVSQLVHEN----AYMKQQLQNPSLGNDTS------ 143
Query: 58 LNLCSSSNTNPSN 70
C S+ T P N
Sbjct: 144 ---CESNVTTPQN 153
>sp|Q2QM96|HOX33_ORYSJ Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp.
japonica GN=HOX33 PE=2 SV=1
Length = 855
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40
++ +N KL N +M+EN+RL+K+ L EN + ++L
Sbjct: 94 LQTVNRKLNAMNKLLMEENDRLQKQVSRLVYENGYMRTQL 133
>sp|A2ZMN9|HOX33_ORYSI Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. indica
GN=HOX33 PE=2 SV=2
Length = 855
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40
++ +N KL N +M+EN+RL+K+ L EN + ++L
Sbjct: 94 LQTVNRKLNAMNKLLMEENDRLQKQVSRLVYENGYMRTQL 133
>sp|Q6AST1|HOX32_ORYSJ Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp.
japonica GN=HOX32 PE=2 SV=1
Length = 859
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLAN 46
++ +N KL N +M+EN+RL+K+ L EN ++Q+L N
Sbjct: 97 LQTVNRKLTAMNKLLMEENDRLQKQVSRLVYEN----GYMRQQLHN 138
>sp|A2XK30|HOX32_ORYSI Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica
GN=HOX32 PE=2 SV=1
Length = 859
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1 MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLAN 46
++ +N KL N +M+EN+RL+K+ L EN ++Q+L N
Sbjct: 97 LQTVNRKLTAMNKLLMEENDRLQKQVSRLVYEN----GYMRQQLHN 138
>sp|A1JHR3|VIAA_YERE8 Protein ViaA OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=viaA PE=3 SV=1
Length = 488
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 8 LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAP 52
L+LQ + + + QLL QE + LL+EL+Q+LA + P
Sbjct: 132 LFLQRWRVSLTLQTITIHHQLLEQEREQLLAELQQRLALSGALEP 176
>sp|Q2XVR7|SC4AA_TAKRU Sodium channel protein type 4 subunit alpha A OS=Takifugu rubripes
GN=scn4aa PE=3 SV=1
Length = 1892
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 30 NQENQALLSELKQKLANGNSKAPNNIPDLNLCSSSNTNPS 69
N ENQ L K L GNS P+ LC + NP+
Sbjct: 323 NAENQYFLEGSKDALLCGNSTDAGKCPEGYLCMKAGRNPN 362
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.121 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,977,349
Number of Sequences: 539616
Number of extensions: 797334
Number of successful extensions: 4512
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4430
Number of HSP's gapped (non-prelim): 108
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)