Query 047813
Match_columns 74
No_of_seqs 41 out of 43
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 03:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03752 conj_TIGR03752 integ 93.6 0.53 1.2E-05 39.0 8.2 18 7-24 77-94 (472)
2 PF15058 Speriolin_N: Sperioli 92.6 0.25 5.3E-06 37.3 4.5 36 10-46 12-47 (200)
3 smart00338 BRLZ basic region l 90.9 0.63 1.4E-05 27.3 4.2 29 13-41 36-64 (65)
4 TIGR00219 mreC rod shape-deter 89.7 1 2.2E-05 33.7 5.4 30 14-43 70-110 (283)
5 PRK13922 rod shape-determining 86.5 2.1 4.5E-05 30.8 5.1 22 12-33 71-92 (276)
6 KOG0709 CREB/ATF family transc 83.6 0.88 1.9E-05 38.0 2.3 31 16-46 285-315 (472)
7 PRK13922 rod shape-determining 83.3 4.4 9.5E-05 29.1 5.6 39 6-44 72-113 (276)
8 PF10226 DUF2216: Uncharacteri 83.3 1.4 3E-05 33.2 3.1 20 14-33 126-145 (195)
9 PF01486 K-box: K-box region; 83.1 3.4 7.3E-05 26.1 4.4 30 11-40 69-98 (100)
10 PF12709 Kinetocho_Slk19: Cent 83.0 4 8.6E-05 27.2 4.9 34 7-40 53-86 (87)
11 KOG3119 Basic region leucine z 79.7 3.9 8.5E-05 30.5 4.4 32 13-44 225-256 (269)
12 PF14988 DUF4515: Domain of un 77.2 4 8.6E-05 29.7 3.7 27 12-38 158-184 (206)
13 PF00170 bZIP_1: bZIP transcri 77.0 8.2 0.00018 22.5 4.4 27 14-40 37-63 (64)
14 PF09759 Atx10homo_assoc: Spin 76.4 2.5 5.5E-05 28.2 2.3 40 6-45 30-76 (102)
15 PF06005 DUF904: Protein of un 74.5 8.8 0.00019 24.1 4.3 8 18-25 26-33 (72)
16 PF08961 DUF1875: Domain of un 69.9 1.5 3.2E-05 34.2 0.0 24 14-37 140-163 (243)
17 PRK14872 rod shape-determining 69.8 9.8 0.00021 30.2 4.5 19 8-26 62-80 (337)
18 PF07407 Seadorna_VP6: Seadorn 68.4 12 0.00025 31.1 4.8 34 5-40 34-67 (420)
19 PF04999 FtsL: Cell division p 67.4 27 0.00058 21.5 5.3 34 9-42 34-67 (97)
20 TIGR02894 DNA_bind_RsfA transc 65.6 18 0.0004 26.4 4.9 30 11-40 105-134 (161)
21 PF07334 IFP_35_N: Interferon- 64.6 16 0.00034 23.9 4.0 26 14-39 4-29 (76)
22 KOG4571 Activating transcripti 63.2 15 0.00032 29.2 4.4 25 15-39 260-284 (294)
23 PF14197 Cep57_CLD_2: Centroso 62.6 22 0.00048 22.1 4.3 38 3-40 19-56 (69)
24 KOG4378 Nuclear protein COP1 [ 62.2 7.3 0.00016 34.0 2.7 22 17-38 650-671 (673)
25 PF03980 Nnf1: Nnf1 ; InterPr 61.4 27 0.00059 22.1 4.6 29 15-43 78-106 (109)
26 PF14645 Chibby: Chibby family 61.1 18 0.00039 24.4 4.0 22 16-37 70-91 (116)
27 KOG4005 Transcription factor X 60.2 15 0.00033 29.3 4.0 34 7-40 101-134 (292)
28 PF07412 Geminin: Geminin; In 60.1 19 0.00041 27.0 4.3 23 15-37 123-145 (200)
29 PF13879 KIAA1430: KIAA1430 ho 59.4 10 0.00022 22.9 2.4 18 24-41 80-97 (98)
30 PF14775 NYD-SP28_assoc: Sperm 56.3 36 0.00078 20.6 4.4 27 17-43 33-59 (60)
31 KOG3633 BAG family molecular c 55.8 16 0.00035 28.1 3.4 24 17-40 56-79 (219)
32 PF02183 HALZ: Homeobox associ 55.7 30 0.00065 20.0 3.8 22 20-41 15-36 (45)
33 COG1792 MreC Cell shape-determ 55.3 33 0.00072 25.8 4.9 41 7-47 70-113 (284)
34 PF11365 DUF3166: Protein of u 53.1 34 0.00073 23.0 4.2 33 13-45 11-43 (96)
35 cd07429 Cby_like Chibby, a nuc 50.1 35 0.00076 23.4 4.0 21 16-36 71-91 (108)
36 PF11577 NEMO: NF-kappa-B esse 48.4 44 0.00096 21.0 4.0 24 14-40 10-33 (68)
37 PF15136 UPF0449: Uncharacteri 47.5 54 0.0012 22.2 4.5 31 7-37 54-84 (97)
38 PF09748 Med10: Transcription 46.7 52 0.0011 22.1 4.4 42 5-46 77-120 (128)
39 TIGR02894 DNA_bind_RsfA transc 46.1 49 0.0011 24.2 4.4 29 15-43 102-130 (161)
40 PF00170 bZIP_1: bZIP transcri 45.0 39 0.00085 19.6 3.2 18 21-38 30-47 (64)
41 PF06156 DUF972: Protein of un 44.7 35 0.00076 22.8 3.3 14 21-34 26-39 (107)
42 KOG3119 Basic region leucine z 43.4 47 0.001 24.8 4.1 27 20-46 218-247 (269)
43 PRK14872 rod shape-determining 43.3 65 0.0014 25.6 5.1 23 13-35 60-82 (337)
44 COG4345 Uncharacterized protei 42.7 58 0.0013 24.6 4.5 31 13-43 128-158 (181)
45 KOG4005 Transcription factor X 42.3 58 0.0013 26.1 4.6 28 13-44 121-148 (292)
46 PF12711 Kinesin-relat_1: Kine 40.0 92 0.002 20.5 4.7 20 7-26 48-67 (86)
47 PF15035 Rootletin: Ciliary ro 39.0 87 0.0019 22.5 4.8 29 14-42 78-106 (182)
48 PF03670 UPF0184: Uncharacteri 38.6 1.2E+02 0.0025 20.1 5.5 48 2-49 29-79 (83)
49 PF07558 Shugoshin_N: Shugoshi 37.3 22 0.00047 20.6 1.2 33 7-39 4-36 (46)
50 PF12017 Tnp_P_element: Transp 36.4 1.2E+02 0.0026 22.7 5.4 31 7-37 8-38 (236)
51 PF06005 DUF904: Protein of un 36.1 1.1E+02 0.0024 19.1 4.6 22 14-35 36-57 (72)
52 PF10960 DUF2762: Protein of u 35.5 1.2E+02 0.0025 19.2 4.7 33 13-45 24-56 (71)
53 PRK10884 SH3 domain-containing 35.5 1.2E+02 0.0027 22.1 5.2 21 16-36 138-158 (206)
54 PF09311 Rab5-bind: Rabaptin-l 34.5 17 0.00036 25.4 0.5 29 14-42 19-47 (181)
55 PF13851 GAS: Growth-arrest sp 33.9 97 0.0021 22.2 4.3 28 15-42 53-80 (201)
56 PRK10884 SH3 domain-containing 33.8 1.1E+02 0.0023 22.4 4.6 34 8-41 137-170 (206)
57 PF04849 HAP1_N: HAP1 N-termin 33.3 81 0.0018 25.0 4.2 35 15-49 172-213 (306)
58 smart00340 HALZ homeobox assoc 32.9 1.1E+02 0.0023 18.5 3.8 23 20-42 8-30 (44)
59 PRK06568 F0F1 ATP synthase sub 32.4 1.2E+02 0.0025 21.4 4.5 29 16-44 44-72 (154)
60 PF14645 Chibby: Chibby family 31.7 80 0.0017 21.3 3.4 24 6-29 74-97 (116)
61 PF06632 XRCC4: DNA double-str 31.4 1.4E+02 0.0031 23.5 5.3 25 5-29 139-163 (342)
62 PRK09413 IS2 repressor TnpA; R 31.4 76 0.0016 20.5 3.2 19 16-34 77-95 (121)
63 KOG2129 Uncharacterized conser 31.3 1E+02 0.0022 26.6 4.7 36 9-44 169-210 (552)
64 PF14662 CCDC155: Coiled-coil 31.3 1.1E+02 0.0024 23.0 4.4 37 4-40 82-118 (193)
65 PF04977 DivIC: Septum formati 30.3 1.1E+02 0.0024 17.4 5.2 32 11-42 18-49 (80)
66 PRK00888 ftsB cell division pr 29.0 1.7E+02 0.0037 19.1 5.2 25 17-41 34-58 (105)
67 KOG4196 bZIP transcription fac 27.7 1.8E+02 0.0039 21.0 4.8 31 9-39 64-103 (135)
68 PTZ00454 26S protease regulato 27.3 1E+02 0.0022 24.2 3.8 31 11-41 30-60 (398)
69 TIGR03752 conj_TIGR03752 integ 27.1 1.2E+02 0.0025 25.6 4.3 23 22-44 114-139 (472)
70 KOG4360 Uncharacterized coiled 26.8 52 0.0011 28.6 2.2 18 15-32 171-188 (596)
71 PRK13169 DNA replication intia 26.4 98 0.0021 21.0 3.2 32 15-46 20-54 (110)
72 PF06305 DUF1049: Protein of u 24.3 1.5E+02 0.0032 16.8 3.4 17 21-37 45-61 (68)
73 PF07716 bZIP_2: Basic region 23.7 1.5E+02 0.0033 16.8 4.3 22 20-41 28-49 (54)
74 PF13815 Dzip-like_N: Iguana/D 23.7 2.2E+02 0.0047 18.5 4.7 30 14-43 77-106 (118)
75 PF08614 ATG16: Autophagy prot 23.6 2E+02 0.0043 20.0 4.3 27 18-44 159-185 (194)
76 TIGR02209 ftsL_broad cell divi 23.3 1.7E+02 0.0037 17.2 5.4 32 11-42 25-56 (85)
77 PF07407 Seadorna_VP6: Seadorn 22.8 1.8E+02 0.0038 24.4 4.5 27 13-39 35-61 (420)
78 PF05746 DALR_1: DALR anticodo 22.7 41 0.00089 20.5 0.7 16 9-24 75-90 (119)
79 PF07989 Microtub_assoc: Micro 21.8 2.2E+02 0.0047 17.8 4.4 30 13-42 39-68 (75)
80 PF01166 TSC22: TSC-22/dip/bun 21.7 96 0.0021 19.6 2.2 16 18-33 15-30 (59)
81 PF07106 TBPIP: Tat binding pr 21.4 2.3E+02 0.0049 19.1 4.2 26 18-43 80-105 (169)
82 PF11542 Mdv1: Mitochondrial d 21.0 72 0.0016 19.7 1.5 27 17-46 11-37 (50)
83 PF14185 SpoIISB_antitox: Anti 20.8 64 0.0014 20.3 1.3 9 14-22 39-47 (56)
84 TIGR03517 GldM_gliding gliding 20.8 1.6E+02 0.0035 24.7 4.0 29 19-47 40-68 (523)
85 COG0608 RecJ Single-stranded D 20.6 2.6E+02 0.0056 22.1 4.9 41 7-47 247-287 (491)
86 COG0711 AtpF F0F1-type ATP syn 20.6 2.8E+02 0.0061 18.9 4.6 30 16-45 46-75 (161)
87 COG1832 Predicted CoA-binding 20.2 68 0.0015 23.0 1.5 15 9-23 123-137 (140)
No 1
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.63 E-value=0.53 Score=39.01 Aligned_cols=18 Identities=50% Similarity=0.558 Sum_probs=16.0
Q ss_pred HHHHhhhhHHHHhHHHHH
Q 047813 7 KLYLQNCYIMKENERLRK 24 (74)
Q Consensus 7 kLyleN~~Im~ENErLRk 24 (74)
+|--+|..+.+|||+||+
T Consensus 77 ~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 77 KLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566789999999999998
No 2
>PF15058 Speriolin_N: Speriolin N terminus
Probab=92.59 E-value=0.25 Score=37.33 Aligned_cols=36 Identities=36% Similarity=0.446 Sum_probs=27.1
Q ss_pred HhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047813 10 LQNCYIMKENERLRKKAQLLNQENQALLSELKQKLAN 46 (74)
Q Consensus 10 leN~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~s~ 46 (74)
=++.+.|.|||+|+|...++ +||+.|-+-|-+--..
T Consensus 12 hqierLv~ENeeLKKlVrLi-rEN~eLksaL~ea~~~ 47 (200)
T PF15058_consen 12 HQIERLVRENEELKKLVRLI-RENHELKSALGEACAE 47 (200)
T ss_pred HHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence 36778899999999988776 5778877776555443
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=90.92 E-value=0.63 Score=27.33 Aligned_cols=29 Identities=41% Similarity=0.481 Sum_probs=24.9
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
..+..||+.|+.++..|.+|+..|-.++.
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999998887763
No 4
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=89.70 E-value=1 Score=33.68 Aligned_cols=30 Identities=33% Similarity=0.308 Sum_probs=19.0
Q ss_pred hHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQL-----------LNQENQALLSELKQK 43 (74)
Q Consensus 14 ~Im~ENErLRkkA~l-----------L~qEnqaLlseLk~k 43 (74)
.+.+||++||++-.. |.+||..|...|.-+
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 466777877765322 566777766666544
No 5
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.49 E-value=2.1 Score=30.78 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=11.1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHH
Q 047813 12 NCYIMKENERLRKKAQLLNQEN 33 (74)
Q Consensus 12 N~~Im~ENErLRkkA~lL~qEn 33 (74)
-..+.+||++||++...|..+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 71 LFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444443
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=83.56 E-value=0.88 Score=37.96 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=27.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047813 16 MKENERLRKKAQLLNQENQALLSELKQKLAN 46 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk~k~s~ 46 (74)
-+||..|.||.+.|..+|+-|+++|++-...
T Consensus 285 taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 285 TAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred ccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4799999999999999999999999875544
No 7
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.32 E-value=4.4 Score=29.14 Aligned_cols=39 Identities=31% Similarity=0.181 Sum_probs=31.9
Q ss_pred hHHHHhhhhHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 047813 6 SKLYLQNCYIMKENERLRKKAQ---LLNQENQALLSELKQKL 44 (74)
Q Consensus 6 ~kLyleN~~Im~ENErLRkkA~---lL~qEnqaLlseLk~k~ 44 (74)
.+++-||...-+||.+|+.... .|.+||+.|...|.-+.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4688899999999999998877 67889988877765443
No 8
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.28 E-value=1.4 Score=33.23 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=15.0
Q ss_pred hHHHHhHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQEN 33 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEn 33 (74)
-+|+||-.||+-...|.+|.
T Consensus 126 ~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 126 ELIRENLELKELCLYLDEER 145 (195)
T ss_pred HHHHhHHHHHHHHHHHhccc
Confidence 46777777777777777776
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.11 E-value=3.4 Score=26.06 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
+..-|+.+.+.|++|...|.+||..|-.++
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999987765
No 10
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=82.97 E-value=4 Score=27.21 Aligned_cols=34 Identities=38% Similarity=0.430 Sum_probs=30.0
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
+|-.+|....+|||+||++-..-+.|-+.||.-|
T Consensus 53 ~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 53 ELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999999998754
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=79.70 E-value=3.9 Score=30.54 Aligned_cols=32 Identities=31% Similarity=0.283 Sum_probs=23.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELKQKL 44 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~ 44 (74)
.+..+||+.||.+.+.|.+|+..|...+.+..
T Consensus 225 ~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34568888899888888888776665554433
No 12
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=77.24 E-value=4 Score=29.70 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=23.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 047813 12 NCYIMKENERLRKKAQLLNQENQALLS 38 (74)
Q Consensus 12 N~~Im~ENErLRkkA~lL~qEnqaLls 38 (74)
-+.|.+||.+||+....|-+|.++|-+
T Consensus 158 ~~~i~~EN~~L~k~L~~l~~e~~~L~~ 184 (206)
T PF14988_consen 158 TRSIKRENQQLRKELLQLIQEAQKLEA 184 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999988754
No 13
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.02 E-value=8.2 Score=22.53 Aligned_cols=27 Identities=41% Similarity=0.436 Sum_probs=20.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
.+-.||+.|++....|.++.++|..+.
T Consensus 37 ~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 37 ELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455778888888888888888777664
No 14
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=76.36 E-value=2.5 Score=28.16 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=34.0
Q ss_pred hHHHHhhhhHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Q 047813 6 SKLYLQNCYIMKENERLRKKAQLL-------NQENQALLSELKQKLA 45 (74)
Q Consensus 6 ~kLyleN~~Im~ENErLRkkA~lL-------~qEnqaLlseLk~k~s 45 (74)
+.+.|.+|.|=.+|.-+|+-|.+- +.|||+++++|+.+-.
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~~ 76 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQGV 76 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccCC
Confidence 568899999999999999999753 6899999999986543
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.48 E-value=8.8 Score=24.13 Aligned_cols=8 Identities=63% Similarity=0.937 Sum_probs=3.7
Q ss_pred HhHHHHHH
Q 047813 18 ENERLRKK 25 (74)
Q Consensus 18 ENErLRkk 25 (74)
|+++|+++
T Consensus 26 e~eeLke~ 33 (72)
T PF06005_consen 26 ENEELKEK 33 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 16
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=69.89 E-value=1.5 Score=34.15 Aligned_cols=24 Identities=46% Similarity=0.797 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALL 37 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLl 37 (74)
.++.||||||+--..|..||-+|+
T Consensus 140 ~L~aeNErLr~EnkqL~ae~arL~ 163 (243)
T PF08961_consen 140 FLLAENERLRRENKQLKAENARLL 163 (243)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999998888888888774
No 17
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=69.82 E-value=9.8 Score=30.16 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=9.7
Q ss_pred HHHhhhhHHHHhHHHHHHH
Q 047813 8 LYLQNCYIMKENERLRKKA 26 (74)
Q Consensus 8 LyleN~~Im~ENErLRkkA 26 (74)
||-||....+||.+|+.+.
T Consensus 62 L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 62 LETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554433
No 18
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=68.36 E-value=12 Score=31.15 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=25.6
Q ss_pred hhHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 5 NSKLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 5 N~kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
+.-|=.||-.+-+||+.||.|...| |+.-+-+.+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V 67 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL--ENEMLRSHV 67 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhh
Confidence 4567789999999999999999888 544454333
No 19
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=67.35 E-value=27 Score=21.55 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 9 YLQNCYIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 9 yleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
+.+......|.+++.+....|..||..|..|...
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778999999999999999999888754
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.60 E-value=18 Score=26.42 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=16.4
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
+|..+..|+++|+++-..|..|+..|..++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666655554443
No 21
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=64.61 E-value=16 Score=23.85 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=19.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSE 39 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlse 39 (74)
-|.+||.+|++.-+-|..|-|.+-.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48899999999888876665555444
No 22
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=63.16 E-value=15 Score=29.18 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSE 39 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlse 39 (74)
.-++||+||..|+-|++|-+-|-..
T Consensus 260 Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999996654433
No 23
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.64 E-value=22 Score=22.08 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=27.9
Q ss_pred cchhHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 3 RLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 3 ~~N~kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
+.+..-..+|..+..|++..-.++.-...|+..|-+++
T Consensus 19 rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 19 RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEEN 56 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888888888888777777777776666554
No 24
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=62.15 E-value=7.3 Score=33.95 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 047813 17 KENERLRKKAQLLNQENQALLS 38 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLls 38 (74)
-|||.|.++-.+|++|||.|..
T Consensus 650 ~eNe~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTLRC 671 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhhhc
Confidence 5788888888888889988753
No 25
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.40 E-value=27 Score=22.09 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
..++=++|+.+.+.+..||.+|..++..+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677899999999999999999998765
No 26
>PF14645 Chibby: Chibby family
Probab=61.08 E-value=18 Score=24.39 Aligned_cols=22 Identities=50% Similarity=0.619 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQALL 37 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLl 37 (74)
.+++.+||++-+.|.+||..|-
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lk 91 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLK 91 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666553
No 27
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.25 E-value=15 Score=29.28 Aligned_cols=34 Identities=35% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
.|-=+|..+..||++||.+-.-|--+|+.|-++|
T Consensus 101 dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~l 134 (292)
T KOG4005|consen 101 DLTEENEILQNENDSLRAINESLLAKNHELDSEL 134 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555677777777777777666655666555444
No 28
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=60.06 E-value=19 Score=27.01 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALL 37 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLl 37 (74)
.++|||+|.+....++.|...|.
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk 145 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLK 145 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999988888776665543
No 29
>PF13879 KIAA1430: KIAA1430 homologue
Probab=59.39 E-value=10 Score=22.90 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047813 24 KKAQLLNQENQALLSELK 41 (74)
Q Consensus 24 kkA~lL~qEnqaLlseLk 41 (74)
+.+..+.+||++|+.-|+
T Consensus 80 ~e~~kI~~EN~~l~~RL~ 97 (98)
T PF13879_consen 80 REQRKIDRENQKLLKRLQ 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 447889999999998775
No 30
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=56.32 E-value=36 Score=20.62 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=16.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 17 KENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
.+--.|-.....|.++|..|...|+|-
T Consensus 33 ~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 33 LDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333344455667888888888763
No 31
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=55.77 E-value=16 Score=28.10 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 17 KENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLlseL 40 (74)
-.=|+|||+|..|.+|...||--+
T Consensus 56 lrVE~LRk~A~~le~eKe~lL~s~ 79 (219)
T KOG3633|consen 56 LRVEKLRKDALNLEEEKEYLLMSM 79 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999998888654
No 32
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.72 E-value=30 Score=20.04 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047813 20 ERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk 41 (74)
+.|+..-..|.+||+.|.+++.
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666654
No 33
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=55.33 E-value=33 Score=25.84 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHhhhhHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhhCc
Q 047813 7 KLYLQNCYIMKENERL---RKKAQLLNQENQALLSELKQKLANG 47 (74)
Q Consensus 7 kLyleN~~Im~ENErL---RkkA~lL~qEnqaLlseLk~k~s~~ 47 (74)
++|.||...=+|++.+ ..+.+.|.+||+.|...|--+....
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~ 113 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSS 113 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence 5677776665555433 4456788899999998887777663
No 34
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=53.07 E-value=34 Score=23.01 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=27.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELKQKLA 45 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~s 45 (74)
++.=+|=+=|||+..-|..||++|..+|.+--+
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999999987433
No 35
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.15 E-value=35 Score=23.36 Aligned_cols=21 Identities=48% Similarity=0.539 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQAL 36 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaL 36 (74)
..|..||+||-+.|.+||.-|
T Consensus 71 ~~e~~rlkkk~~~LeEENNlL 91 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLL 91 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888887655
No 36
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=48.36 E-value=44 Score=21.04 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
.+|.||..|| ..|+|=|+++-..+
T Consensus 10 ~LL~EN~~LK---ealrQ~N~~Mker~ 33 (68)
T PF11577_consen 10 ELLQENQDLK---EALRQNNQAMKERF 33 (68)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHH---HHHHHHHHHHHHHH
Confidence 5789999999 56888888775443
No 37
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=47.46 E-value=54 Score=22.24 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=25.8
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALL 37 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLl 37 (74)
.+|.|=+..+.=|+||.+....|.+.-..|-
T Consensus 54 ~~Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~ 84 (97)
T PF15136_consen 54 QQYQQSRTYVAMNERLQQARDQLKKKCEELR 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999988888887765553
No 38
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.73 E-value=52 Score=22.12 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=34.0
Q ss_pred hhHHHHhhh--hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047813 5 NSKLYLQNC--YIMKENERLRKKAQLLNQENQALLSELKQKLAN 46 (74)
Q Consensus 5 N~kLyleN~--~Im~ENErLRkkA~lL~qEnqaLlseLk~k~s~ 46 (74)
|=-+|...| ...++|+.+|-|...+.+=...|..+|.+.|+.
T Consensus 77 NPDiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe 120 (128)
T PF09748_consen 77 NPDIYTREFVELVRRENQYVKGKMEAFKSFRDVLAEELASAFPE 120 (128)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 334555554 367899999999999999999999999988875
No 39
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.14 E-value=49 Score=24.22 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
+..||++|++.-..|.++|..|-.++..-
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777765543
No 40
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.98 E-value=39 Score=19.61 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047813 21 RLRKKAQLLNQENQALLS 38 (74)
Q Consensus 21 rLRkkA~lL~qEnqaLls 38 (74)
.|..++..|..||..|..
T Consensus 30 ~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 30 ELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555543
No 41
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.66 E-value=35 Score=22.77 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 047813 21 RLRKKAQLLNQENQ 34 (74)
Q Consensus 21 rLRkkA~lL~qEnq 34 (74)
.|++....|-.||.
T Consensus 26 ~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 26 ELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 42
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=43.41 E-value=47 Score=24.84 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhC
Q 047813 20 ERLRKKAQLLNQENQALLSE---LKQKLAN 46 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlse---Lk~k~s~ 46 (74)
...+.|+.+|.+||.+|..+ |++.+.+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999998764 4444443
No 43
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=43.33 E-value=65 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=18.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Q 047813 13 CYIMKENERLRKKAQLLNQENQA 35 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqa 35 (74)
..+.+||++||++-..|.++.++
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999776655
No 44
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.72 E-value=58 Score=24.56 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=25.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
-.+|+|+||+++....+-+|---+.++||.-
T Consensus 128 ~~~~~Everi~~~ieE~v~eLe~~a~~lke~ 158 (181)
T COG4345 128 ADAMEEVERIEKTIEELVSELESLANKLKEV 158 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999877777766653
No 45
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=42.33 E-value=58 Score=26.07 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=15.2
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELKQKL 44 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~ 44 (74)
-.+|.+|..|+..-.+|+|| |.+|++..
T Consensus 121 ~~L~~~n~el~~~le~~~~~----l~~~~~~~ 148 (292)
T KOG4005|consen 121 ESLLAKNHELDSELELLRQE----LAELKQQQ 148 (292)
T ss_pred HHHHhhhHHHHHHHHHHHHH----HHhhHHHH
Confidence 34455555666666666555 44555443
No 46
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=39.96 E-value=92 Score=20.52 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=13.1
Q ss_pred HHHHhhhhHHHHhHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKA 26 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA 26 (74)
+.-+||+++.+||.|||.-.
T Consensus 48 r~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 48 RFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776544
No 47
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.04 E-value=87 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=20.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
.+-+-|..||...+..+..|++|-.+|.+
T Consensus 78 ~L~qvN~lLReQLEq~~~~N~~L~~dl~k 106 (182)
T PF15035_consen 78 ELAQVNALLREQLEQARKANEALQEDLQK 106 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888877776654
No 48
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=38.60 E-value=1.2e+02 Score=20.12 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=37.1
Q ss_pred ccchhHHHHhhhh---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcCC
Q 047813 2 ERLNSKLYLQNCY---IMKENERLRKKAQLLNQENQALLSELKQKLANGNS 49 (74)
Q Consensus 2 E~~N~kLyleN~~---Im~ENErLRkkA~lL~qEnqaLlseLk~k~s~~ns 49 (74)
+.+|..|===|+| |=+-|..|..+.+.|-+.|.....++++.+.+.++
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~~~~ 79 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSKAPS 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3456666555555 34679999999999999999999999999887643
No 49
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=37.28 E-value=22 Score=20.57 Aligned_cols=33 Identities=39% Similarity=0.336 Sum_probs=3.5
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSE 39 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlse 39 (74)
+...+|..|.+.|--+.-|.+.|..+.-.|+++
T Consensus 4 k~~~qn~~laK~Ns~l~~ki~~le~~~s~L~~e 36 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALSIKIQELENEVSKLLNE 36 (46)
T ss_dssp --------------------------HHHHHHH
T ss_pred HHHHHHHHHHhHhHHHHhHHHHHHhHHHHHHHH
Confidence 345678888888877766666555555555543
No 50
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=36.38 E-value=1.2e+02 Score=22.68 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=18.5
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALL 37 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLl 37 (74)
+.|.=|..+-.||+.||++...|..+.+.|-
T Consensus 8 ~~~~ln~~~~~e~~~Lk~kir~le~~l~~Lk 38 (236)
T PF12017_consen 8 EECILNRTLKIENKKLKKKIRRLEKELKKLK 38 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777666666555443
No 51
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.11 E-value=1.1e+02 Score=19.14 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=9.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQA 35 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqa 35 (74)
..-+||+.|+...+.|.+|-.+
T Consensus 36 ~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 36 ELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 52
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=35.53 E-value=1.2e+02 Score=19.19 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=22.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELKQKLA 45 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~s 45 (74)
+|++++|+++-.+.+.=...-|.++..+-.++.
T Consensus 24 ~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~ 56 (71)
T PF10960_consen 24 FYVLKENKKREEKQEEREEKYQEQIEKLTEKLN 56 (71)
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999998888777444444566666655554
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.50 E-value=1.2e+02 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=9.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQAL 36 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaL 36 (74)
-+||++|++.-+.+..|+..|
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 54
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=34.48 E-value=17 Score=25.44 Aligned_cols=29 Identities=34% Similarity=0.412 Sum_probs=9.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
.+..+-++||.....|.+||.-|..++..
T Consensus 19 ~l~~erqkl~~qv~rL~qEN~~Lr~el~~ 47 (181)
T PF09311_consen 19 SLEAERQKLRAQVRRLCQENDWLRGELAN 47 (181)
T ss_dssp HHHHCCHHHHT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999887654
No 55
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=33.91 E-value=97 Score=22.23 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=17.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
|.+||.+|++--..+.+|...|-.+|+.
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5566777776666666666666555543
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.84 E-value=1.1e+02 Score=22.44 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=21.2
Q ss_pred HHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 8 LYLQNCYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 8 LyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
|==+|..+-+|.+.++.+...|..||.++-....
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777777777666666554433
No 57
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.30 E-value=81 Score=25.00 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHhhCcCC
Q 047813 15 IMKENERLRKKAQLLN-------QENQALLSELKQKLANGNS 49 (74)
Q Consensus 15 Im~ENErLRkkA~lL~-------qEnqaLlseLk~k~s~~ns 49 (74)
.=+||..||..|..|. .+-+.|+.+.-+.|+..|.
T Consensus 172 LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~ 213 (306)
T PF04849_consen 172 LEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQ 213 (306)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcch
Confidence 3467888888887776 2236667666666665544
No 58
>smart00340 HALZ homeobox associated leucin zipper.
Probab=32.93 E-value=1.1e+02 Score=18.53 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047813 20 ERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk~ 42 (74)
|-|++-..-|-.||..|-.+++.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~e 30 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQE 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566555555543
No 59
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=32.37 E-value=1.2e+02 Score=21.42 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047813 16 MKENERLRKKAQLLNQENQALLSELKQKL 44 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk~k~ 44 (74)
+.+=|++|+.|..|..|+++.|.+-+++-
T Consensus 44 Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA 72 (154)
T PRK06568 44 VLKAEKLKEDAALLFEQTNAQIKKLETLR 72 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998877654
No 60
>PF14645 Chibby: Chibby family
Probab=31.73 E-value=80 Score=21.28 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=15.3
Q ss_pred hHHHHhhhhHHHHhHHHHHHHHHH
Q 047813 6 SKLYLQNCYIMKENERLRKKAQLL 29 (74)
Q Consensus 6 ~kLyleN~~Im~ENErLRkkA~lL 29 (74)
..|--+|..+.+||-.||-|.++|
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777776665
No 61
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=31.44 E-value=1.4e+02 Score=23.54 Aligned_cols=25 Identities=48% Similarity=0.554 Sum_probs=16.7
Q ss_pred hhHHHHhhhhHHHHhHHHHHHHHHH
Q 047813 5 NSKLYLQNCYIMKENERLRKKAQLL 29 (74)
Q Consensus 5 N~kLyleN~~Im~ENErLRkkA~lL 29 (74)
+..|..+|...-+||+||+.-+..+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~ 163 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKL 163 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777887776554433
No 62
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=31.37 E-value=76 Score=20.45 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQ 34 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnq 34 (74)
-+|+.+|++.-..|..|+.
T Consensus 77 ~~ei~~L~~el~~L~~E~d 95 (121)
T PRK09413 77 MKQIKELQRLLGKKTMENE 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988875
No 63
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.29 E-value=1e+02 Score=26.60 Aligned_cols=36 Identities=39% Similarity=0.597 Sum_probs=27.6
Q ss_pred HHhhhhHHHHh--HHHHHHHHH----HHHHHHHHHHHHHHHh
Q 047813 9 YLQNCYIMKEN--ERLRKKAQL----LNQENQALLSELKQKL 44 (74)
Q Consensus 9 yleN~~Im~EN--ErLRkkA~l----L~qEnqaLlseLk~k~ 44 (74)
-+||-.|.++| |.||+.|.. |.||-.||.-.|-++.
T Consensus 169 Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrm 210 (552)
T KOG2129|consen 169 KLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRM 210 (552)
T ss_pred HhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 47899999999 999998865 4688778776554443
No 64
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.29 E-value=1.1e+02 Score=23.02 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=25.0
Q ss_pred chhHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 4 LNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 4 ~N~kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
.|.+||-++.-.=+||..|=.+..-|..||-.|+.+.
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~ 118 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER 118 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 4556666666666777777777777777777666654
No 65
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.30 E-value=1.1e+02 Score=17.41 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=21.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
.-..+-+|-..|+++-..+.+||..|-.+++.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777888887777666654
No 66
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=29.00 E-value=1.7e+02 Score=19.11 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=11.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 17 KENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
+|=+.++++-..|.++|++|..+++
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555544443
No 67
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.70 E-value=1.8e+02 Score=21.02 Aligned_cols=31 Identities=35% Similarity=0.608 Sum_probs=19.0
Q ss_pred HHhhhhHH---------HHhHHHHHHHHHHHHHHHHHHHH
Q 047813 9 YLQNCYIM---------KENERLRKKAQLLNQENQALLSE 39 (74)
Q Consensus 9 yleN~~Im---------~ENErLRkkA~lL~qEnqaLlse 39 (74)
|-+||.|- ++|-.|+.....|++||-.+--|
T Consensus 64 YA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 64 YAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777663 34555666666677777666444
No 68
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.32 E-value=1e+02 Score=24.25 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=15.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
+++.+-.+++.|+.+-..+.+|-..+-.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEEVK 60 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444444444
No 69
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.09 E-value=1.2e+02 Score=25.63 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHh
Q 047813 22 LRKKAQLLNQENQAL---LSELKQKL 44 (74)
Q Consensus 22 LRkkA~lL~qEnqaL---lseLk~k~ 44 (74)
+.+..+.|.+|-+.+ +.+|+.+|
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443333 55566666
No 70
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=26.77 E-value=52 Score=28.64 Aligned_cols=18 Identities=50% Similarity=0.678 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQE 32 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qE 32 (74)
.-+||++||-||.+|.+|
T Consensus 171 ~~een~~lr~k~~llk~E 188 (596)
T KOG4360|consen 171 LEEENTQLRSKAMLLKTE 188 (596)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 468999999999999987
No 71
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.38 E-value=98 Score=20.97 Aligned_cols=32 Identities=38% Similarity=0.490 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH---HHHHhhC
Q 047813 15 IMKENERLRKKAQLLNQENQALLSE---LKQKLAN 46 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlse---Lk~k~s~ 46 (74)
+.+|=+.|+.....|-.||.+|--| |+.++..
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666554 5555554
No 72
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.34 E-value=1.5e+02 Score=16.83 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047813 21 RLRKKAQLLNQENQALL 37 (74)
Q Consensus 21 rLRkkA~lL~qEnqaLl 37 (74)
++|+++..+++|..++-
T Consensus 45 ~~r~~~~~~~k~l~~le 61 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLE 61 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 73
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.75 E-value=1.5e+02 Score=16.75 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047813 20 ERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk 41 (74)
+.|...+..|..||..|..++.
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777776655543
No 74
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.72 E-value=2.2e+02 Score=18.53 Aligned_cols=30 Identities=33% Similarity=0.480 Sum_probs=20.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
++..+++.|.++.+.+.++.+.|-..+++.
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666655543
No 75
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.58 E-value=2e+02 Score=20.02 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047813 18 ENERLRKKAQLLNQENQALLSELKQKL 44 (74)
Q Consensus 18 ENErLRkkA~lL~qEnqaLlseLk~k~ 44 (74)
++..+.+|...|.+||..|+..+-++.
T Consensus 159 ~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888889999999988776554
No 76
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.27 E-value=1.7e+02 Score=17.21 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=23.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
+....-.+-+++.++...+..||..|..+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888888999888887763
No 77
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.77 E-value=1.8e+02 Score=24.44 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=13.3
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSE 39 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlse 39 (74)
--+-+||++||+.-..|..|-.+|=++
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444333
No 78
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=22.72 E-value=41 Score=20.47 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=12.2
Q ss_pred HHhhhhHHHHhHHHHH
Q 047813 9 YLQNCYIMKENERLRK 24 (74)
Q Consensus 9 yleN~~Im~ENErLRk 24 (74)
|+.+|.||.+++..|+
T Consensus 75 fy~~~~I~~~~~~~~~ 90 (119)
T PF05746_consen 75 FYDNVRILDEDEEIRK 90 (119)
T ss_dssp HHHHS-STTSTTCHH-
T ss_pred HHhhccccccchHHHH
Confidence 6789999999998873
No 79
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.82 E-value=2.2e+02 Score=17.84 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=20.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
.-+++||-.|+-...-|.+|.+.+-..|++
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888887777787777665544443
No 80
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.71 E-value=96 Score=19.63 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHHHHHH
Q 047813 18 ENERLRKKAQLLNQEN 33 (74)
Q Consensus 18 ENErLRkkA~lL~qEn 33 (74)
|=|-||.+..-|...|
T Consensus 15 EVevLK~~I~eL~~~n 30 (59)
T PF01166_consen 15 EVEVLKEQIAELEERN 30 (59)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 81
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.42 E-value=2.3e+02 Score=19.09 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 18 ENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 18 ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
|...||.....|.++...|-++|+.-
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666543
No 82
>PF11542 Mdv1: Mitochondrial division protein 1; InterPro: IPR021061 This entry represents mitochondrial division protein 1 (Mdv1), which is a component of the mitochondrial fission machinery in Saccharomyces cerevisiae. The protein is also involved in peroxisome proliferation []. Mdv1 along with Fis1 is also involved in controlling Dnm-1 dependent devision, a GTPase involved in the mediation of mitochondrial division. In this role, Mdv1 is the linker between Fis1 and Dnm1. Mdv1 plays a key role in the regulation of Dnm1 self-assembly []. Mdv1 has a partially redundent function to CAF4 in acting as an adapter protein, binding to FIS1 on the mitochondrial outer membrane and recruiting the dynamin-like GTPase DNM1 to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division [, ]. Mdv1 interacts with CAF4, DNM1 and FIS1, components of the mitochondrial fission machinery. It interacts via its N-terminal, coiled-coil extension (NTE) with FIS1, and via its WD repeats with DNM1. Mdv1 is uniformly distributed on the cytoplasmic face of the mitochondrial outer membrane. This localisation is dependent on FIS1. It reorganises to punctate structures on mitochondria, corresponding to mitochondrial constriction sites, at a late step in mitochondrial division. This relocalisation is dependent on DNM1. ; PDB: 2PQN_B 3UUX_B.
Probab=20.96 E-value=72 Score=19.70 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047813 17 KENERLRKKAQLLNQENQALLSELKQKLAN 46 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLlseLk~k~s~ 46 (74)
-||+++||+|. .|--.|+.-++.-++.
T Consensus 11 G~~~~~~K~s~---~~E~SLFQGF~S~LPI 37 (50)
T PF11542_consen 11 GDNENRSKNSH---PKEPSLFQGFRSYLPI 37 (50)
T ss_dssp -------------------HHHHHHHHHHH
T ss_pred CcchhhhcccC---cccchHHHHhhhhchH
Confidence 37999999984 5556777777766654
No 83
>PF14185 SpoIISB_antitox: Antitoxin SpoIISB, type II toxin-antitoxin system ; PDB: 3O6Q_B.
Probab=20.82 E-value=64 Score=20.35 Aligned_cols=9 Identities=67% Similarity=0.918 Sum_probs=6.2
Q ss_pred hHHHHhHHH
Q 047813 14 YIMKENERL 22 (74)
Q Consensus 14 ~Im~ENErL 22 (74)
+|.++||||
T Consensus 39 Ri~kqnerl 47 (56)
T PF14185_consen 39 RIFKQNERL 47 (56)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567777766
No 84
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=20.79 E-value=1.6e+02 Score=24.65 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 047813 19 NERLRKKAQLLNQENQALLSELKQKLANG 47 (74)
Q Consensus 19 NErLRkkA~lL~qEnqaLlseLk~k~s~~ 47 (74)
||.|..--....++|+++++.|+.+..+.
T Consensus 40 n~sl~~s~~~~~~~N~~~~~~l~~k~~~~ 68 (523)
T TIGR03517 40 NESLEAAVGNSEKYNNALLAELDKAVAKA 68 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555555566666666666666555543
No 85
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=20.65 E-value=2.6e+02 Score=22.09 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANG 47 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~s~~ 47 (74)
-.-|.......+.+.++++..++++|.+++.+++..+..+.
T Consensus 247 ~~~L~~~~~~~~~~~~~~~~~~~n~erk~i~~~~~~~a~~~ 287 (491)
T COG0608 247 GVELLLTEDDEKAESLAEELELLNEERKKIENELLKEAIKI 287 (491)
T ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455666777789999999999999999999998877664
No 86
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=20.58 E-value=2.8e+02 Score=18.95 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=22.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047813 16 MKENERLRKKAQLLNQENQALLSELKQKLA 45 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk~k~s 45 (74)
+.+-+++|+.|+.+..+-.+-|.+.+.+.+
T Consensus 46 l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~ 75 (161)
T COG0711 46 LAEAERLKEEAQALLAEYEQELEEAREQAS 75 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888888888887877775543
No 87
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.16 E-value=68 Score=23.05 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.8
Q ss_pred HHhhhhHHHHhHHHH
Q 047813 9 YLQNCYIMKENERLR 23 (74)
Q Consensus 9 yleN~~Im~ENErLR 23 (74)
++.|+|||.|-.||+
T Consensus 123 vV~nrCi~~E~~~l~ 137 (140)
T COG1832 123 VVMDRCIMIEHPRLG 137 (140)
T ss_pred HHHHhhHHHHHhhhh
Confidence 789999999999986
Done!