Query 047813
Match_columns 74
No_of_seqs 41 out of 43
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 05:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yy0_A C-MYC-binding protein; 89.4 0.45 1.5E-05 27.7 3.6 27 15-41 24-50 (53)
2 1hjb_A Ccaat/enhancer binding 87.8 1.2 4E-05 28.3 5.0 36 7-42 40-75 (87)
3 1gu4_A CAAT/enhancer binding p 82.2 0.81 2.8E-05 28.4 2.2 28 11-38 44-71 (78)
4 2j5u_A MREC protein; bacterial 81.3 1.3 4.5E-05 31.4 3.3 35 8-42 24-61 (255)
5 1t2k_D Cyclic-AMP-dependent tr 80.1 3.6 0.00012 23.5 4.4 27 14-40 33-59 (61)
6 1uii_A Geminin; human, DNA rep 70.5 7.8 0.00027 24.9 4.5 27 15-41 44-70 (83)
7 1ci6_A Transcription factor AT 69.5 14 0.00048 21.4 5.7 32 9-40 29-60 (63)
8 3w03_C DNA repair protein XRCC 69.4 9.4 0.00032 27.1 5.1 31 13-43 148-178 (184)
9 1nkp_B MAX protein, MYC proto- 69.3 8.9 0.0003 22.6 4.3 27 15-41 52-78 (83)
10 2wt7_A Proto-oncogene protein 69.0 12 0.00041 21.5 4.7 30 12-41 32-61 (63)
11 1jnm_A Proto-oncogene C-JUN; B 65.5 3.1 0.0001 23.9 1.6 27 14-40 33-59 (62)
12 3o6q_B Stage II sporulation pr 64.7 2.7 9.1E-05 25.7 1.3 11 13-23 38-48 (56)
13 2j5u_A MREC protein; bacterial 63.9 4.3 0.00015 28.7 2.5 23 14-36 23-45 (255)
14 1wlq_A Geminin; coiled-coil; 2 63.7 13 0.00044 23.9 4.5 22 15-36 36-57 (83)
15 1nkp_A C-MYC, MYC proto-oncoge 60.2 21 0.00071 21.8 4.8 27 16-42 58-84 (88)
16 1gd2_E Transcription factor PA 59.9 5.8 0.0002 24.1 2.2 25 11-35 44-68 (70)
17 1dh3_A Transcription factor CR 59.9 15 0.00051 20.9 3.9 22 21-42 26-47 (55)
18 2jee_A YIIU; FTSZ, septum, coi 56.7 34 0.0012 21.5 5.8 36 7-42 31-66 (81)
19 2v66_B Nuclear distribution pr 50.5 50 0.0017 21.6 5.8 44 2-45 2-45 (111)
20 1t6f_A Geminin; coiled-coil, c 50.0 32 0.0011 19.3 4.1 18 15-32 5-22 (37)
21 1hjb_A Ccaat/enhancer binding 48.9 30 0.001 21.6 4.3 22 20-41 39-60 (87)
22 1nlw_A MAD protein, MAX dimeri 48.6 29 0.00098 20.9 4.1 25 17-41 54-78 (80)
23 1gu4_A CAAT/enhancer binding p 46.7 35 0.0012 20.9 4.3 22 20-41 39-60 (78)
24 3w03_C DNA repair protein XRCC 45.1 27 0.00093 24.6 4.1 23 5-27 154-176 (184)
25 3q4f_C DNA repair protein XRCC 44.1 15 0.00053 26.5 2.7 21 19-39 163-183 (186)
26 2zxx_A Geminin; coiled-coil, c 43.8 34 0.0012 21.5 3.9 22 15-36 32-53 (79)
27 2wvr_A Geminin; DNA replicatio 42.2 37 0.0013 24.9 4.5 17 16-32 114-130 (209)
28 3oja_B Anopheles plasmodium-re 40.0 73 0.0025 23.3 5.8 30 20-49 554-583 (597)
29 2oqq_A Transcription factor HY 39.1 51 0.0017 18.9 3.9 24 18-41 18-41 (42)
30 4emc_A Monopolin complex subun 37.5 52 0.0018 23.7 4.6 26 15-40 25-50 (190)
31 4egx_A Kinesin-like protein KI 35.8 49 0.0017 22.3 4.1 30 11-41 16-50 (184)
32 3i00_A HIP-I, huntingtin-inter 31.3 90 0.0031 20.3 4.6 28 17-44 22-49 (120)
33 2dgc_A Protein (GCN4); basic d 30.5 82 0.0028 18.2 4.5 24 18-41 31-54 (63)
34 3q4f_C DNA repair protein XRCC 29.3 77 0.0026 22.8 4.3 19 6-24 164-182 (186)
35 1wmi_B RELB, hypothetical prot 28.6 39 0.0013 21.0 2.4 22 1-30 3-24 (67)
36 4h22_A Leucine-rich repeat fli 28.4 82 0.0028 20.7 4.0 40 4-43 45-84 (103)
37 3ra3_B P2F; coiled coil domain 28.2 72 0.0025 16.9 3.4 20 21-40 4-23 (28)
38 3swk_A Vimentin; cytoskeleton, 27.9 88 0.003 19.0 3.9 23 20-42 3-25 (86)
39 2w83_C C-JUN-amino-terminal ki 27.9 1E+02 0.0035 19.5 4.2 27 14-40 13-39 (77)
40 3m9b_A Proteasome-associated A 27.4 1.1E+02 0.0038 22.6 5.0 36 8-43 59-94 (251)
41 3hnw_A Uncharacterized protein 27.4 1.3E+02 0.0046 19.6 5.1 32 10-41 103-134 (138)
42 3s9g_A Protein hexim1; cyclin 27.3 94 0.0032 20.7 4.2 17 25-41 73-89 (104)
43 1go4_E MAD1 (mitotic arrest de 27.3 1E+02 0.0035 19.9 4.3 23 18-40 13-35 (100)
44 2wt7_B Transcription factor MA 26.4 1.3E+02 0.0043 19.1 5.3 39 7-45 36-86 (90)
45 2khk_A ATP synthase subunit B; 26.0 79 0.0027 16.6 4.6 31 16-46 15-45 (53)
46 2w6a_A ARF GTPase-activating p 23.0 1.3E+02 0.0043 18.5 3.9 28 10-37 34-61 (63)
47 1v3y_A Peptide deformylase; pr 21.9 31 0.0011 23.8 1.1 24 20-43 169-192 (192)
48 3he5_B Synzip2; heterodimeric 21.3 95 0.0033 18.3 3.0 18 19-36 5-22 (52)
49 1nkp_A C-MYC, MYC proto-oncoge 21.0 1.5E+02 0.005 17.9 4.6 29 8-36 57-85 (88)
No 1
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.41 E-value=0.45 Score=27.67 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
+..||+.||.|-..|.++++.|-++|.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999888877766654
No 2
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.84 E-value=1.2 Score=28.26 Aligned_cols=36 Identities=33% Similarity=0.340 Sum_probs=27.1
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
.+..+--.+-+||+.||.+.+.|.+|.+.|-..|.+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567899999999999999998776655543
No 3
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=82.17 E-value=0.81 Score=28.45 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=20.7
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQALLS 38 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqaLls 38 (74)
.--.+-+||+.||.+...|.+|...|-.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999988888665543
No 4
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=81.27 E-value=1.3 Score=31.40 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=20.0
Q ss_pred HHHhhhhHHHHhHHHHHHH---HHHHHHHHHHHHHHHH
Q 047813 8 LYLQNCYIMKENERLRKKA---QLLNQENQALLSELKQ 42 (74)
Q Consensus 8 LyleN~~Im~ENErLRkkA---~lL~qEnqaLlseLk~ 42 (74)
|+-||...-+||.+|+.+. +.|.+||+.|...|.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666666666443 3455677776665543
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.06 E-value=3.6 Score=23.46 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=20.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
.+-.+|..|+.....|..|+..|-..|
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566788888888888888877665443
No 6
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=70.46 E-value=7.8 Score=24.85 Aligned_cols=27 Identities=37% Similarity=0.418 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
-++||+.|.+....|..|+..|-+++.
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999998888888866655443
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.47 E-value=14 Score=21.40 Aligned_cols=32 Identities=28% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 9 YLQNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 9 yleN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
--+-..+-++|..|+.++..|..|++.|-..|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567889999999999999988775544
No 8
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=69.43 E-value=9.4 Score=27.05 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=25.1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 13 CYIMKENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
++.|..+.+|+.+-+.|.+||+.|..+..+-
T Consensus 148 d~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 148 CYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888888888888888888888877654
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.35 E-value=8.9 Score=22.63 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
+-+++++|......|.+||.+|-.+|.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888899999999999998888775
No 10
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.99 E-value=12 Score=21.52 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=21.8
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 12 NCYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 12 N~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
=..+-.+|+.|+.....|..|...|-..|.
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888777665553
No 11
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.54 E-value=3.1 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=16.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
.+-.||+.|+..+..|..|+..|-..|
T Consensus 33 ~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 33 TLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777766554433
No 12
>3o6q_B Stage II sporulation protein SB; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=64.74 E-value=2.7 Score=25.66 Aligned_cols=11 Identities=64% Similarity=0.751 Sum_probs=8.9
Q ss_pred hhHHHHhHHHH
Q 047813 13 CYIMKENERLR 23 (74)
Q Consensus 13 ~~Im~ENErLR 23 (74)
-.|++|||||=
T Consensus 38 ~rIfK~Nerli 48 (56)
T 3o6q_B 38 ARIFKENERLI 48 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
Confidence 47999999983
No 13
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.91 E-value=4.3 Score=28.71 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=16.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQAL 36 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaL 36 (74)
.+.+||++||++-..|.++.+.+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~ 45 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEV 45 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999888775544
No 14
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=63.68 E-value=13 Score=23.86 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQAL 36 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaL 36 (74)
-++||++|.+....++.|-..|
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~L 57 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARL 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999988888755554333
No 15
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.16 E-value=21 Score=21.78 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
-+++.++...-..|.++|+.|..+|.+
T Consensus 58 ~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 58 QAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666778888888777754
No 16
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.92 E-value=5.8 Score=24.10 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=16.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQA 35 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqa 35 (74)
.|..+..||+.||.....|..|+..
T Consensus 44 ~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 44 LHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777777777654
No 17
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=59.88 E-value=15 Score=20.91 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047813 21 RLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 21 rLRkkA~lL~qEnqaLlseLk~ 42 (74)
.|-.++..|..||..|..++..
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677889999999887754
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.65 E-value=34 Score=21.53 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=24.1
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
.|=-+|...-+||+-+|.....|.+||+.|-.+...
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777665543
No 19
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.51 E-value=50 Score=21.63 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=37.0
Q ss_pred ccchhHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047813 2 ERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLA 45 (74)
Q Consensus 2 E~~N~kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~s 45 (74)
|+.+..|--.|-.+--|.|.+|.|......|--...+.|+..+.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~ 45 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLS 45 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999999887777777776554
No 20
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=49.97 E-value=32 Score=19.35 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQE 32 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qE 32 (74)
.++|||+|-|--.+-+.|
T Consensus 5 ~L~ENekLhk~ie~Kdee 22 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNE 22 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999998876654444
No 21
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.86 E-value=30 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047813 20 ERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk 41 (74)
..+-.++..|.+||..|-.++.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888765543
No 22
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.60 E-value=29 Score=20.89 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 17 KENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
+++.+|......|..|+.+|..+|.
T Consensus 54 ~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 54 DSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666677766666554
No 23
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.74 E-value=35 Score=20.88 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047813 20 ERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk 41 (74)
..+-.++..|.+||..|-.++.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999998876654
No 24
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.08 E-value=27 Score=24.64 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=16.5
Q ss_pred hhHHHHhhhhHHHHhHHHHHHHH
Q 047813 5 NSKLYLQNCYIMKENERLRKKAQ 27 (74)
Q Consensus 5 N~kLyleN~~Im~ENErLRkkA~ 27 (74)
+..|.-+|...-+|||||+.-+.
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888776654
No 25
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=44.14 E-value=15 Score=26.50 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 047813 19 NERLRKKAQLLNQENQALLSE 39 (74)
Q Consensus 19 NErLRkkA~lL~qEnqaLlse 39 (74)
=..|+.+-..|.+||+.|+.+
T Consensus 163 i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555544
No 26
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=43.77 E-value=34 Score=21.52 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=14.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQAL 36 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaL 36 (74)
-.+||++|.+....+..|-.+|
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999988777555544333
No 27
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=42.15 E-value=37 Score=24.94 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=9.8
Q ss_pred HHHhHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQE 32 (74)
Q Consensus 16 m~ENErLRkkA~lL~qE 32 (74)
++||+.|.+....|..|
T Consensus 114 LeEN~~Lh~~ie~l~eE 130 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNE 130 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666665554433
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.02 E-value=73 Score=23.29 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcCC
Q 047813 20 ERLRKKAQLLNQENQALLSELKQKLANGNS 49 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk~k~s~~ns 49 (74)
|.-+++...+.||++++-+++|+...+.+.
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444557888999999998888888887643
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.13 E-value=51 Score=18.87 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 18 ENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 18 ENErLRkkA~lL~qEnqaLlseLk 41 (74)
-|-.|-.|...|..||+-|..-|+
T Consensus 18 ~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhc
Confidence 356677788888888888766554
No 30
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.48 E-value=52 Score=23.67 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 15 IMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 15 Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
+..||.+|+.+-....+|..+|..+|
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql 50 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQI 50 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776653
No 31
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=35.76 E-value=49 Score=22.29 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=20.8
Q ss_pred hhhhHHHH-----hHHHHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKE-----NERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 11 eN~~Im~E-----NErLRkkA~lL~qEnqaLlseLk 41 (74)
+|-.+|+| -||||+ ++..++|.++.|.++-
T Consensus 16 ~~e~l~~el~~tWeeKl~~-te~~~~e~~~~l~~~g 50 (184)
T 4egx_A 16 ETEKIIAELNETWEEKLRR-TEAIRMEREALLAEMG 50 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHcC
Confidence 45556665 367764 7888888888887763
No 32
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.31 E-value=90 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=15.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047813 17 KENERLRKKAQLLNQENQALLSELKQKL 44 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLlseLk~k~ 44 (74)
.|.++||..-..+..|-+....+|+.++
T Consensus 22 reie~lk~ele~l~~E~q~~v~ql~~~i 49 (120)
T 3i00_A 22 REISGLKAQLENMKTESQRVVLQLKGHV 49 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 33
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.45 E-value=82 Score=18.18 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 18 ENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 18 ENErLRkkA~lL~qEnqaLlseLk 41 (74)
..+.|..++..|..||..|.+++.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888776654
No 34
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.26 E-value=77 Score=22.84 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=16.3
Q ss_pred hHHHHhhhhHHHHhHHHHH
Q 047813 6 SKLYLQNCYIMKENERLRK 24 (74)
Q Consensus 6 ~kLyleN~~Im~ENErLRk 24 (74)
..|.-+|+..-+|||||..
T Consensus 164 ~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 164 AENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999975
No 35
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=28.62 E-value=39 Score=21.04 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=14.5
Q ss_pred CccchhHHHHhhhhHHHHhHHHHHHHHHHH
Q 047813 1 MERLNSKLYLQNCYIMKENERLRKKAQLLN 30 (74)
Q Consensus 1 ME~~N~kLyleN~~Im~ENErLRkkA~lL~ 30 (74)
||+++- ||+|=||||...|.|.
T Consensus 3 MEkv~~--------vl~ELeRlkveiQRLE 24 (67)
T 1wmi_B 3 MEKVGD--------VLKELERLKVEIQRLE 24 (67)
T ss_dssp ----CH--------HHHHHHHHHHHHHHHH
T ss_pred hHHHHH--------HHHHHHHHHHHHHHHH
Confidence 677765 8999999998777663
No 36
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.44 E-value=82 Score=20.69 Aligned_cols=40 Identities=23% Similarity=0.087 Sum_probs=29.9
Q ss_pred chhHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 4 LNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 4 ~N~kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
....++=++.--.+|-|++++....|..+-..|-.+|+++
T Consensus 45 ~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 45 QLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888999999888888877766676654
No 37
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.24 E-value=72 Score=16.85 Aligned_cols=20 Identities=45% Similarity=0.494 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047813 21 RLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 21 rLRkkA~lL~qEnqaLlseL 40 (74)
||+.|-..|.||-.||-.++
T Consensus 4 rlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 45566666667766665554
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.93 E-value=88 Score=18.97 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047813 20 ERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk~ 42 (74)
+.||++...+..||..|..++..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn 25 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDN 25 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 57899999999998888877643
No 39
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.90 E-value=1e+02 Score=19.48 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=18.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 14 YIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 14 ~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
.+|.||..|..--..|+--...|++.+
T Consensus 13 nLi~EN~eLl~TKNaLnvvk~DLI~rv 39 (77)
T 2w83_C 13 NLILENTQLLETKNALNIVKNDLIAKV 39 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888876666666666665543
No 40
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.37 E-value=1.1e+02 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=27.9
Q ss_pred HHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 8 LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 8 LyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~k 43 (74)
|=.++..+.+.|++|+..-..+++|...|-.||++-
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777888888888888888888888888653
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.35 E-value=1.3e+02 Score=19.64 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=18.4
Q ss_pred HhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 10 LQNCYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 10 leN~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
+++-..-+|+++|+++-..|..++..|=++|.
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666665554443
No 42
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.30 E-value=94 Score=20.67 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047813 25 KAQLLNQENQALLSELK 41 (74)
Q Consensus 25 kA~lL~qEnqaLlseLk 41 (74)
+...|..|||.|+.+=+
T Consensus 73 everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 73 ELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456778888776543
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.27 E-value=1e+02 Score=19.86 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 047813 18 ENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 18 ENErLRkkA~lL~qEnqaLlseL 40 (74)
+=..||++..-|..||..|..+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777776554
No 44
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.41 E-value=1.3e+02 Score=19.05 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=25.8
Q ss_pred HHHHhhhhHH---------HHhHHHHHHHHHHHHHHHHHHHH---HHHHhh
Q 047813 7 KLYLQNCYIM---------KENERLRKKAQLLNQENQALLSE---LKQKLA 45 (74)
Q Consensus 7 kLyleN~~Im---------~ENErLRkkA~lL~qEnqaLlse---Lk~k~s 45 (74)
+.|-+||.+= .|+..|......|.+|+..+..+ +|+|+.
T Consensus 36 RgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 36 RGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888753 35666777777788887777554 445543
No 45
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=26.02 E-value=79 Score=16.56 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047813 16 MKENERLRKKAQLLNQENQALLSELKQKLAN 46 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk~k~s~ 46 (74)
+.+=++.+..|..+..+.+..|.+-+..-..
T Consensus 15 l~~A~~~~~ea~~~~~~~e~~l~~Ar~ea~~ 45 (53)
T 2khk_A 15 LASAERAHKDLDLAKASATDQLKKAKAEAQV 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999988876544
No 46
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.03 E-value=1.3e+02 Score=18.50 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=19.5
Q ss_pred HhhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 047813 10 LQNCYIMKENERLRKKAQLLNQENQALL 37 (74)
Q Consensus 10 leN~~Im~ENErLRkkA~lL~qEnqaLl 37 (74)
-=||..-+|=.++.++.+-|..||-.|.
T Consensus 34 kVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 34 KVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3466666676777777888888876654
No 47
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=21.85 E-value=31 Score=23.82 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 20 ERLRKKAQLLNQENQALLSELKQK 43 (74)
Q Consensus 20 ErLRkkA~lL~qEnqaLlseLk~k 43 (74)
+++++....+.++-+|.|++|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~ 192 (192)
T 1v3y_A 169 EANRAELVRFQKEARALLKELSQG 192 (192)
T ss_dssp HHTHHHHHHHHHHC----------
T ss_pred HHHHHHHHHhHHHHHHHHHHhhcC
Confidence 446778888888889999999864
No 48
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.30 E-value=95 Score=18.31 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047813 19 NERLRKKAQLLNQENQAL 36 (74)
Q Consensus 19 NErLRkkA~lL~qEnqaL 36 (74)
|.-||||...|.+.|.+|
T Consensus 5 naylrkkiarlkkdnlql 22 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQL 22 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhh
Confidence 344555555555555443
No 49
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.05 E-value=1.5e+02 Score=17.86 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=20.1
Q ss_pred HHHhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 047813 8 LYLQNCYIMKENERLRKKAQLLNQENQAL 36 (74)
Q Consensus 8 LyleN~~Im~ENErLRkkA~lL~qEnqaL 36 (74)
|--++.....+-+.|+++-+.|.++-++|
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456677777788888888887775544
Done!