Query 047813
Match_columns 74
No_of_seqs 41 out of 43
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 05:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 55.2 14 0.001 20.4 4.8 27 16-42 58-84 (88)
2 d1nlwa_ a.38.1.1 (A:) Mad prot 50.3 12 0.00089 20.3 3.9 26 16-41 53-78 (79)
3 d1wuua2 d.58.26.7 (A:217-392) 38.3 17 0.0012 22.6 3.7 36 6-41 56-91 (176)
4 d1qkka_ c.23.1.1 (A:) Transcri 34.9 23 0.0017 20.3 3.7 22 9-30 115-136 (140)
5 d1s4ea2 d.58.26.7 (A:181-351) 34.6 13 0.00097 23.4 2.7 30 12-41 58-87 (171)
6 d1nkpb_ a.38.1.1 (B:) Max prot 32.0 36 0.0026 18.4 4.2 26 16-41 53-78 (83)
7 d1mc0a1 d.110.2.1 (A:215-401) 31.0 43 0.0032 19.0 6.2 31 11-41 150-180 (187)
8 d1piea2 d.58.26.7 (A:214-396) 29.4 33 0.0024 21.6 4.0 35 6-40 61-95 (183)
9 d1mzba_ a.4.5.42 (A:) Ferric u 23.4 9.7 0.0007 22.1 0.4 26 16-41 1-26 (134)
10 d1ez4a2 d.162.1.1 (A:163-334) 21.4 54 0.0039 19.0 3.6 25 17-41 146-170 (171)
11 d1uklc_ a.38.1.1 (C:) SREBP-2 20.2 56 0.0041 16.9 3.2 21 21-41 37-57 (61)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.18 E-value=14 Score=20.43 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQALLSELKQ 42 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk~ 42 (74)
-+++++|..+-..|.+++..|..+|.+
T Consensus 58 ~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 58 QAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888877754
No 2
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.26 E-value=12 Score=20.30 Aligned_cols=26 Identities=15% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
.+++++|...-..|.+++++|..+|.
T Consensus 53 ~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 53 EDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777788888887776664
No 3
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.26 E-value=17 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.2
Q ss_pred hHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 6 SKLYLQNCYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 6 ~kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
-..|.-=.+++.||+|..+.+.+|.+.+..-|.+|-
T Consensus 56 ~~~~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~lg~Lm 91 (176)
T d1wuua2 56 KEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLM 91 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHhhccCHHHHHHHH
Confidence 344555568999999999999999888776665553
No 4
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=34.90 E-value=23 Score=20.30 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=11.8
Q ss_pred HHhhhhHHHHhHHHHHHHHHHH
Q 047813 9 YLQNCYIMKENERLRKKAQLLN 30 (74)
Q Consensus 9 yleN~~Im~ENErLRkkA~lL~ 30 (74)
.++......||+.||+.++.+.
T Consensus 115 ~~~~~~~~~e~~~l~~~~e~~~ 136 (140)
T d1qkka_ 115 AEEKRRLVMENRSLRRAAEAAS 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666665554443
No 5
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=34.61 E-value=13 Score=23.36 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=23.6
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 12 NCYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 12 N~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
=.+++.||+|..+.+.+|.+.+..-+-+|-
T Consensus 58 a~Hvv~En~Rv~~~~~al~~~d~~~~G~lm 87 (171)
T d1s4ea2 58 FSYIVRENARVLEVRDALKEGDIEKVGKIL 87 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 357999999999999999887766665553
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.96 E-value=36 Score=18.36 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
.+++.+|......|.+++.+|-.++.
T Consensus 53 ~~~~~~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 53 RRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777766666553
No 7
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.05 E-value=43 Score=18.98 Aligned_cols=31 Identities=29% Similarity=0.123 Sum_probs=23.0
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 11 QNCYIMKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 11 eN~~Im~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
.-+-|.=+|-+|.++++.+.+++++|+..-+
T Consensus 150 ~~~a~ai~na~l~~~~~~~~~~~~~lle~~~ 180 (187)
T d1mc0a1 150 HYTGTVLTSTLAFQKEQKLKCECQALLQVAK 180 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666788888888888888888885444
No 8
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=29.40 E-value=33 Score=21.65 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=27.2
Q ss_pred hHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813 6 SKLYLQNCYIMKENERLRKKAQLLNQENQALLSEL 40 (74)
Q Consensus 6 ~kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseL 40 (74)
-.+|.-=.+++.||+|..+.+.+|.+.+-.-|-+|
T Consensus 61 ~~~~rRa~Hvv~En~Rv~~a~~al~~~d~~~~G~l 95 (183)
T d1piea2 61 ETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGEL 95 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Confidence 34566667899999999999999988776655544
No 9
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.39 E-value=9.7 Score=22.06 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 16 MKENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 16 m~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
|.||..||++..-+-....++|..|.
T Consensus 1 m~~~~~Lr~~GlR~T~qR~~Il~~L~ 26 (134)
T d1mzba_ 1 MVENSELRKAGLKVTLPRVKILQMLD 26 (134)
T ss_dssp CHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCchHHHHHcCCCCCHHHHHHHHHHH
Confidence 67888899888777777777777775
No 10
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}
Probab=21.43 E-value=54 Score=18.96 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813 17 KENERLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 17 ~ENErLRkkA~lL~qEnqaLlseLk 41 (74)
.|-++|++-|..|..+-..-|++|+
T Consensus 146 ~E~~~l~~s~~~l~~~i~~~l~~l~ 170 (171)
T d1ez4a2 146 DELKKMQDSAATLKKVLNDGLAELE 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5779999999999877666777664
No 11
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.18 E-value=56 Score=16.91 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047813 21 RLRKKAQLLNQENQALLSELK 41 (74)
Q Consensus 21 rLRkkA~lL~qEnqaLlseLk 41 (74)
.|++.-+.|.+|+.+|-++..
T Consensus 37 ~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 37 YLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777766553
Done!