BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047816
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 173/382 (45%), Gaps = 70/382 (18%)
Query: 84 GYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNL 143
GYY L IGTPPQ ++VDTGS+ V A H + D F+ + SSTY+ ++
Sbjct: 14 GYYLEML-IGTPPQKLQILVDTGSSNFAV--AGTPH--SYIDTYFDTERSSTYRSKGFDV 68
Query: 144 YCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFG---NESDLKPQRAVFGCENVETGDL 200
KY + S +G +GED+++ N S L +F EN L
Sbjct: 69 TV-------------KYTQ-GSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFF---L 111
Query: 201 YSQHADGIIGLGRGDL--------SVVDQLVEKGVISDSFS--LCYGGMDVG-----GGA 245
+GI+GL L + D LV + I + FS +C G+ V GG+
Sbjct: 112 PGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGS 171
Query: 246 MVLGGISP---PKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDS 301
+VLGGI P D+ +T P++ YY I++ + + G+ L L+ + ++ ++DS
Sbjct: 172 LVLGGIEPSLYKGDIWYT---PIKEEWYYQIEILKLEIGGQSLNLDCREYNADK-AIVDS 227
Query: 302 GTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDT----FP 357
GTT LP+ F DA++ + I P ++D ++G+ S+T FP
Sbjct: 228 GTTLLRLPQKVF----DAVVEAVARASLI----PEFSDGFWTGSQLACWTNSETPWSYFP 279
Query: 358 AVEMAFGNGQ-----KLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTT---LLGGIIVRN 409
+ + + ++ + P+ Y+ + ++ G P+T ++G ++
Sbjct: 280 KISIYLRDENSSRSFRITILPQLYI--QPMMGAGLNYECYRFGISPSTNALVIGATVMEG 337
Query: 410 TLVMYDREHSKIGFWKTNCSEL 431
V++DR ++GF + C+E+
Sbjct: 338 FYVIFDRAQKRVGFAASPCAEI 359
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 148/359 (41%), Gaps = 63/359 (17%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y + IGTP Q F +I DTGS+ +VP C C DH +F PD SST++
Sbjct: 10 LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHN--QFNPDDSSTFEAT 67
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L Y S +G+LG D + G SD +FG E G
Sbjct: 68 SQEL-------------SITYG-TGSMTGILGYDTVQVGGISD---TNQIFGLSETEPGS 110
Query: 200 -LYSQHADGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGI 251
LY DGI+GL G V D L ++G++S D FS+ D G ++LGGI
Sbjct: 111 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGI 170
Query: 252 SPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
+ PV Y+ I L I + G+ + + G ++D+GT+ P
Sbjct: 171 DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQAIVDTGTSLLTGPT 225
Query: 311 AAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLS-DTFPAVEMAFGNGQKL 369
+A + I + S ++ +S S D+ P + NG +
Sbjct: 226 SAIANIQSDIGASENSDGEMV-----------------ISCSSIDSLPDIVFTI-NGVQY 267
Query: 370 LLAPENYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNTLVMYDREHSKIGF 423
L+P Y+ + C F+ PT+ +LG + +R ++DR ++K+G
Sbjct: 268 PLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGL 322
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 148/358 (41%), Gaps = 61/358 (17%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y + IGTP Q F +I DTGS+ +VP C C DH +F PD SST++
Sbjct: 10 LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHN--QFNPDDSSTFEAT 67
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L Y S +G+LG D + G SD +FG E G
Sbjct: 68 SQEL-------------SITYG-TGSMTGILGYDTVQVGGISD---TNQIFGLSETEPGS 110
Query: 200 -LYSQHADGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGI 251
LY DGI+GL G V D L ++G++S D FS+ D G ++LGGI
Sbjct: 111 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGI 170
Query: 252 SPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
+ PV Y+ I L I + G+ + + G ++D+GT+ P
Sbjct: 171 DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQAIVDTGTSLLTGPT 225
Query: 311 AAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLL 370
+A + I + S ++ + S ++ L D + NG +
Sbjct: 226 SAIANIQSDIGASENSDGEMV------------ISCSSIASLPDIVFTI-----NGVQYP 268
Query: 371 LAPENYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNTLVMYDREHSKIGF 423
L+P Y+ + C F+ PT+ +LG + +R ++DR ++K+G
Sbjct: 269 LSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGL 322
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 148/359 (41%), Gaps = 63/359 (17%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y + IGTP Q F +I DTGS+ +VP C C DH +F PD SST++
Sbjct: 10 LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHN--QFNPDDSSTFEAT 67
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L Y S +G+LG D + G SD +FG E G
Sbjct: 68 XQEL-------------SITYG-TGSMTGILGYDTVQVGGISD---TNQIFGLSETEPGS 110
Query: 200 -LYSQHADGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGI 251
LY DGI+GL G V D L ++G++S D FS+ D G ++LGGI
Sbjct: 111 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGI 170
Query: 252 SPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
+ PV Y+ I L I + G+ + + G ++D+GT+ P
Sbjct: 171 DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQAIVDTGTSLLTGPT 225
Query: 311 AAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLS-DTFPAVEMAFGNGQKL 369
+A + I + S ++ +S S D+ P + NG +
Sbjct: 226 SAIANIQSDIGASENSDGEMV-----------------ISCSSIDSLPDIVFTI-NGVQY 267
Query: 370 LLAPENYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNTLVMYDREHSKIGF 423
L+P Y+ + C F+ PT+ +LG + +R ++DR ++K+G
Sbjct: 268 PLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGL 322
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 152/373 (40%), Gaps = 64/373 (17%)
Query: 70 PNARMRLYDDLL---LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQ 124
P A + D+ L L+ Y + IGTP Q F +I DTGS+ +VP C C DH
Sbjct: 39 PEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHN 98
Query: 125 DPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLK 184
+F PD SST++ L Y S +G+LG D + G SD
Sbjct: 99 --QFNPDDSSTFEATSQEL-------------SITYG-TGSMTGILGYDTVQVGGISD-- 140
Query: 185 PQRAVFGCENVETGD-LYSQHADGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCY 236
+FG E G LY DGI+GL G V D L ++G++S D FS+
Sbjct: 141 -TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 199
Query: 237 GGMDVGGGAMVLGGISPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKH 295
D G ++LGGI + PV Y+ I L I + G+ + + G
Sbjct: 200 SSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGC 254
Query: 296 GTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDT 355
++D+GT+ P +A + I + S D C S D+
Sbjct: 255 QAIVDTGTSLLTGPTSAIANIQSDIGASENS-------DGEMVISCSS---------IDS 298
Query: 356 FPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNT 410
P + +G + L+P Y+ + C F+ PT+ +LG + +R
Sbjct: 299 LPDIVFTI-DGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQY 353
Query: 411 LVMYDREHSKIGF 423
++DR ++K+G
Sbjct: 354 YTVFDRANNKVGL 366
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 152/373 (40%), Gaps = 64/373 (17%)
Query: 70 PNARMRLYDDLL---LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQ 124
P A + D+ L L+ Y + IGTP Q F +I DTGS+ +VP C C DH
Sbjct: 39 PEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHN 98
Query: 125 DPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLK 184
+F PD SST++ L Y S +G+LG D + G SD
Sbjct: 99 --QFNPDDSSTFEATXQEL-------------SITYG-TGSMTGILGYDTVQVGGISD-- 140
Query: 185 PQRAVFGCENVETGD-LYSQHADGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCY 236
+FG E G LY DGI+GL G V D L ++G++S D FS+
Sbjct: 141 -TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 199
Query: 237 GGMDVGGGAMVLGGISPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKH 295
D G ++LGGI + PV Y+ I L I + G+ + + G
Sbjct: 200 SSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGC 254
Query: 296 GTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDT 355
++D+GT+ P +A + I + S D C S D+
Sbjct: 255 QAIVDTGTSLLTGPTSAIANIQSDIGASENS-------DGEMVISCSS---------IDS 298
Query: 356 FPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNT 410
P + +G + L+P Y+ + C F+ PT+ +LG + +R
Sbjct: 299 LPDIVFTI-DGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQY 353
Query: 411 LVMYDREHSKIGF 423
++DR ++K+G
Sbjct: 354 YTVFDRANNKVGL 366
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 148/359 (41%), Gaps = 63/359 (17%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y + IGTP Q F +I DTGS+ +VP C C DH +F PD SST++
Sbjct: 10 LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHN--QFNPDDSSTFEAT 67
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L Y S +G+LG D + G SD +FG E G
Sbjct: 68 SQEL-------------SITYG-TGSMTGILGYDTVQVGGISD---TNQIFGLSETEPGS 110
Query: 200 -LYSQHADGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGI 251
LY DGI+GL G V D L ++G++S D FS+ D G ++LGGI
Sbjct: 111 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGI 170
Query: 252 SPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
+ PV Y+ I L I + G+ + + G ++D+GT+ P
Sbjct: 171 DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQAIVDTGTSLLTGPT 225
Query: 311 AAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLS-DTFPAVEMAFGNGQKL 369
+A + I + S ++ +S S D+ P + +G +
Sbjct: 226 SAIANIQSDIGASENSDGEMV-----------------ISCSSIDSLPDIVFTI-DGVQY 267
Query: 370 LLAPENYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNTLVMYDREHSKIGF 423
L+P Y+ + C F+ PT+ +LG + +R ++DR ++K+G
Sbjct: 268 PLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGL 322
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 148/359 (41%), Gaps = 63/359 (17%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y + IGTP Q F +I DTGS+ +VP C C DH +F PD SST++
Sbjct: 10 LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHN--QFNPDDSSTFEAT 67
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L Y S +G+LG D + G SD +FG E G
Sbjct: 68 XQEL-------------SITYG-TGSMTGILGYDTVQVGGISD---TNQIFGLSETEPGS 110
Query: 200 -LYSQHADGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGI 251
LY DGI+GL G V D L ++G++S D FS+ D G ++LGGI
Sbjct: 111 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGI 170
Query: 252 SPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
+ PV Y+ I L I + G+ + + G ++D+GT+ P
Sbjct: 171 DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACS-----GGCQAIVDTGTSLLTGPT 225
Query: 311 AAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLS-DTFPAVEMAFGNGQKL 369
+A + I + S ++ +S S D+ P + +G +
Sbjct: 226 SAIANIQSDIGASENSDGEMV-----------------ISCSSIDSLPDIVFTI-DGVQY 267
Query: 370 LLAPENYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNTLVMYDREHSKIGF 423
L+P Y+ + C F+ PT+ +LG + +R ++DR ++K+G
Sbjct: 268 PLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGL 322
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 146/354 (41%), Gaps = 61/354 (17%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPVKCNL 143
Y + IGTP Q F ++ DTGS+ +VP C C +H +F P+ SSTYQ
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHN--RFNPEDSSTYQSTS--- 68
Query: 144 YCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD-LYS 202
E Y S +G+LG D + G SD +FG E G LY
Sbjct: 69 ------ETVSITYGTG-----SMTGILGYDTVQVGGISD---TNQIFGLSETEPGSFLYY 114
Query: 203 QHADGIIGLG------RGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGISPPK 255
DGI+GL G V D + +G++S D FS+ D G ++ GGI
Sbjct: 115 APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIFGGIDSSY 174
Query: 256 DMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFL 314
+ PV Y+ I + I + G+ + +G ++D+GT+ P +
Sbjct: 175 YTGSLNWVPVTVEGYWQITVDSITMNGEAI----ACAEGCQ-AIVDTGTSLLTGPTSP-- 227
Query: 315 AFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPE 374
++ +QS I + + D+ S S +S L D + NG + + P
Sbjct: 228 ------IANIQS--DIGASENSDGDMVVS--CSAISSLPDIVFTI-----NGVQYPVPPS 272
Query: 375 NYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNTLVMYDREHSKIGF 423
Y+ + C+ FQ PT +LG + +R ++DR ++++G
Sbjct: 273 AYILQSE----GSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQVGL 322
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 146/354 (41%), Gaps = 61/354 (17%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPVKCNL 143
Y + IGTP Q F ++ DTGS+ +VP C C +H +F P+ SSTYQ
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHN--RFNPEDSSTYQSTS--- 68
Query: 144 YCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD-LYS 202
E Y S +G+LG D + G SD +FG E G LY
Sbjct: 69 ------ETVSITYGTG-----SMTGILGYDTVQVGGISD---TNQIFGLSETEPGSFLYY 114
Query: 203 QHADGIIGLG------RGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGISPPK 255
DGI+GL G V D + +G++S D FS+ D G ++ GGI
Sbjct: 115 APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIFGGIDSSY 174
Query: 256 DMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFL 314
+ PV Y+ I + I + G+ + +G ++D+GT+ P +
Sbjct: 175 YTGSLNWVPVTVEGYWQITVDSITMNGEAI----ACAEGCQ-AIVDTGTSLLTGPTSP-- 227
Query: 315 AFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPE 374
++ +QS I + + D+ S S +S L D + NG + + P
Sbjct: 228 ------IANIQS--DIGASENSDGDMVVS--CSAISSLPDIVFTI-----NGVQYPVPPS 272
Query: 375 NYLFRHSKVRGAYCLGIFQNGRDPTT-----LLGGIIVRNTLVMYDREHSKIGF 423
Y+ + C+ FQ PT +LG + +R ++DR ++++G
Sbjct: 273 AYILQSE----GSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGL 322
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 152/355 (42%), Gaps = 56/355 (15%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y +++IGTPPQ F ++ DTGS+ +VP C+ C +H +F+P SST++ +
Sbjct: 9 LDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHH--RFDPRKSSTFRNL 66
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L + S G LG D ++ N D P + V G + G+
Sbjct: 67 GKPL--------------SIHYGTGSMEGFLGYDTVTVSNIVD--PNQTV-GLSTEQPGE 109
Query: 200 LYS-QHADGIIGLGRGDLS------VVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGIS 252
+++ DGI+GL L+ V D ++++ +++ Y + G + LG I
Sbjct: 110 VFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSMLTLGAID 169
Query: 253 PPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEA 311
P H PV Y+ + + + G + G +LD+GT+ + P +
Sbjct: 170 PSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACV-----GGCQAILDTGTSVLFGPSS 224
Query: 312 AFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLL 371
L + AI + + D N ++ P+ V ++ NG+ L
Sbjct: 225 DILKIQMAIGATENRYGEF---DVNCGNL--RSMPTVVFEI------------NGRDYPL 267
Query: 372 APENYLFRHSKVRGAYCLGIFQNGRDPTT-LLGGIIVRNTLVMYDREHSKIGFWK 425
+P Y SK +G +C FQ + +LG + +R ++DR ++++G K
Sbjct: 268 SPSAYT---SKDQG-FCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAK 318
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 151/357 (42%), Gaps = 60/357 (16%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y ++++GTPPQ F ++ DTGS+ +VP C+ C +HQ +F+P SST+Q +
Sbjct: 12 LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQ--RFDPRKSSTFQNL 69
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L + S G+LG D ++ N D+ Q+ V G E GD
Sbjct: 70 GKPL--------------SIHYGTGSMQGILGYDTVTVSNIVDI--QQTV-GLSTQEPGD 112
Query: 200 LYS-QHADGIIGLGRGDLS------VVDQLVEKGVISDSFSLCYGGMDVGG--GAMVLGG 250
++ DGI+G+ L+ V D ++ + +++ Y MD G + LG
Sbjct: 113 FFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVY--MDRNGQESMLTLGA 170
Query: 251 ISPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLP 309
I P H PV Y+ + + ++G + +G +LD+GT+ P
Sbjct: 171 IDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVAC-----EGGCQAILDTGTSKLVGP 225
Query: 310 EAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKL 369
+ L + AI + + DI D LS P V NG+
Sbjct: 226 SSDILNIQQAIGATQNQYGEF--------DI-------DCDNLS-YMPTVVFEI-NGKMY 268
Query: 370 LLAPENYLFRHSKVRGAYCLGIFQN-GRDPTTLLGGIIVRNTLVMYDREHSKIGFWK 425
L P Y S+ +G +C FQ+ +LG + +R ++DR ++ +G K
Sbjct: 269 PLTPSAYT---SQDQG-FCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAK 321
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 152/357 (42%), Gaps = 60/357 (16%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH--CGDHQDPKFEPDLSSTYQPV 139
L+ Y ++++GTPPQ F ++ DTGS+ +VP C+ C +HQ +F+P SST+Q +
Sbjct: 12 LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQ--RFDPRKSSTFQNL 69
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
L + S G+LG D ++ N D+ Q+ V G E GD
Sbjct: 70 GKPL--------------SIHYGTGSMQGILGYDTVTVSNIVDI--QQTV-GLSTQEPGD 112
Query: 200 LYS-QHADGIIGLGRGDLS------VVDQLVEKGVISDSFSLCYGGMDVGG--GAMVLGG 250
+++ DGI+G+ L+ V D ++ + +++ Y MD G + LG
Sbjct: 113 VFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVY--MDRNGQESMLTLGA 170
Query: 251 ISPPKDMVFTHSDPVR-SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLP 309
I P H PV Y+ + + ++G + +G +LD+GT+ P
Sbjct: 171 IDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVAC-----EGGCQAILDTGTSKLVGP 225
Query: 310 EAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKL 369
+ L + AI + + DI D LS P V NG+
Sbjct: 226 SSDILNIQQAIGATQNQYGEF--------DI-------DCDNLS-YMPTVVFEI-NGKMY 268
Query: 370 LLAPENYLFRHSKVRGAYCLGIFQN-GRDPTTLLGGIIVRNTLVMYDREHSKIGFWK 425
L P Y S+ +G +C FQ+ +LG + +R ++DR ++ +G K
Sbjct: 269 PLTPSAYT---SQDQG-FCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAK 321
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 33 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 87
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 88 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 133
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 193
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 194 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 249
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 250 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 305
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 306 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 363
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 364 VVFDRARKRIGFAVSAC 380
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 16 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 70
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 71 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 116
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 176
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 235
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 236 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 291
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 292 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 351
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 352 ARKRIGFAVSAC 363
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 18 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 72
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 73 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 118
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 178
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 179 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 237
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 238 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 293
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 294 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 353
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 354 ARKRIGFAVSAC 365
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 13 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 67
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 68 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 113
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 173
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 174 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 232
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 233 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 288
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 289 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 348
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 349 ARKRIGFAVSAC 360
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 15 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 69
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 70 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 115
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 175
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 176 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 234
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 235 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 290
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 291 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 350
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 351 ARKRIGFAVSAC 362
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 16 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 70
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 71 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 116
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 176
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 235
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 236 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 291
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 292 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 351
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 352 ARKRIGFAVSAC 363
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 18 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 72
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 73 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 118
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 178
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 179 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 237
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 238 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 293
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 294 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 353
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 354 ARKRIGFAVSAC 365
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 18 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 72
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 73 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 118
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 178
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 179 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 237
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 238 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 293
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 294 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 353
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 354 ARKRIGFAVSAC 365
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 33 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 87
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 88 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 133
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 193
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 194 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 249
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 250 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 305
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 306 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 365
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 366 FDRARKRIGFAVSAC 380
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 31 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 85
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 86 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 131
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 191
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 192 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 247
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 248 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 303
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 304 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 361
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 362 VVFDRARKRIGFAVSAC 378
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 31 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 85
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 86 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 131
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 191
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 192 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 247
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 248 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 303
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 304 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 361
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 362 VVFDRARKRIGFAVSAC 378
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 31 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 85
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 86 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 131
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 191
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 192 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 247
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 248 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 303
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 304 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 361
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 362 VVFDRARKRIGFAVSAC 378
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 87 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 193 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 248
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 249 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 304
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 305 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 364
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 365 FDRARKRIGFAVSAC 379
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 16 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 70
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 71 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 116
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 176
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 235
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 236 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 291
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 292 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 351
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 352 ARKRIGFAVSAC 363
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 28 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 82
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 83 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 128
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 188
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 189 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 244
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 245 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 300
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 301 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 358
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 359 VVFDRARKRIGFAVSAC 375
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 16 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 70
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 71 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 116
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 176
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 235
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 236 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 291
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 292 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 351
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 352 ARKRIGFAVSAC 363
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 16 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 70
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 71 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 116
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 176
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 235
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 236 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 291
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 292 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 351
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 352 ARKRIGFAVSAC 363
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 21 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 75
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 76 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 121
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 181
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 182 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 240
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 241 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 296
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 297 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 356
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 357 ARKRIGFAVSAC 368
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 17 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 71
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 72 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 117
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 118 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 177
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 178 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 236
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 237 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 292
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 293 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 352
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 353 ARKRIGFAVSAC 364
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 164/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y Y + + +G LG D++S + ++ + + + +
Sbjct: 87 VYV-------------PYTQ-GAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 193 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 248
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 249 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 304
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 305 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 364
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 365 FDRARKRIGFAVSAC 379
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 35 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 89
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 90 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 135
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 136 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 195
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 196 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 251
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 252 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 307
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 308 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 365
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 366 VVFDRARKRIGFAVSAC 382
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 164/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 38 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 92
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y Y + + +G LG D++S + ++ + + + +
Sbjct: 93 VYV-------------PYTQ-GAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFING 138
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 139 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 198
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 199 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 254
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 255 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 310
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 311 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 370
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 371 FDRARKRIGFAVSAC 385
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 166/377 (44%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y Y + + +G LG D++S + ++ + + + +
Sbjct: 87 VYV-------------PYTQ-GAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 193 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 248
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 249 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 304
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 305 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 362
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 363 VVFDRARKRIGFAVSAC 379
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 87 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 193 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 248
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 249 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 304
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 305 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 364
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 365 FDRARKRIGFAVSAC 379
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 21 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 75
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 76 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 121
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 181
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 182 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 240
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 241 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 296
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 297 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 356
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 357 ARKRIGFAVSAC 368
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 30 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 84
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 85 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 130
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 131 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 190
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 191 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVD 246
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 247 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 302
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 303 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 360
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 361 VVFDRARKRIGFAVSAC 377
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 28 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 82
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 83 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 128
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 188
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 189 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 244
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 245 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 300
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 301 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 360
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 361 FDRARKRIGFAVSAC 375
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 19 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAA--PHPFLHR--YYQRQLSSTYRDLRKG 73
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 74 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 119
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 120 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 179
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 180 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 238
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 239 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 294
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 295 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 354
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 355 ARKRIGFAVSAC 366
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 164/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 28 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 82
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y Y + + +G LG D++S + ++ + + + +
Sbjct: 83 VYV-------------PYTQ-GAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFING 128
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 188
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 189 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 244
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 245 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 300
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 301 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 360
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 361 FDRARKRIGFAVSAC 375
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 29 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 83
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 84 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 129
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 130 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 189
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 190 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 245
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 246 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 301
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 302 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 361
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 362 FDRARKRIGFAVSAC 376
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 28 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 82
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 83 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 128
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 188
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 189 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVD 244
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 245 SGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 300
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 301 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 358
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 359 VVFDRARKRIGFAVSAC 375
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 28 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 82
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 83 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 128
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 188
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 189 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 244
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 245 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 300
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 301 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 360
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 361 FDRARKRIGFAVSAC 375
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 75 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 129
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 130 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 175
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 235
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 236 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 291
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 292 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 347
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 348 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS--STGTVMGAVIMEGFY 405
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 406 VVFDRARKRIGFAVSAC 422
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 166/377 (44%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 52 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 106
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y Y + + +G LG D++S + ++ + + + +
Sbjct: 107 VYV-------------PYTQ-GAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFING 152
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 212
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 213 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 268
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 269 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 324
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 325 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 382
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 383 VVFDRARKRIGFAVSAC 399
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 163/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 52 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 106
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 107 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 152
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 212
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 213 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 268
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 269 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 324
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T++G +I+ V+
Sbjct: 325 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVV 384
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 385 FDRARKRIGFAVSAC 399
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 74 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 128
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 129 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 174
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 175 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 234
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 235 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 290
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 291 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 346
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 347 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS--STGTVMGAVIMEGFY 404
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 405 VVFDRARKRIGFAVSAC 421
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 60/377 (15%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 75 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 129
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 130 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 175
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 235
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 236 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 291
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 292 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 347
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGA----YCLGIFQNGRDPTTLLGGIIVRNTL 411
+ ++ + P+ YL V + Y I Q+ T++G +I+
Sbjct: 348 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTG--TVMGAVIMEGFY 405
Query: 412 VMYDREHSKIGFWKTNC 428
V++DR +IGF + C
Sbjct: 406 VVFDRARKRIGFAVSAC 422
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 13 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 67
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + + + + + +
Sbjct: 68 VYVPYTQGKWE--------------GELGTDLVSIPHGPQVTVRANIAAITESDKFFIQG 113
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSEVLASVGG 173
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 174 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 232
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 233 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 288
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 289 MGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 348
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 349 ARKRIGFAVSAC 360
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 15 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 69
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + + + + + +
Sbjct: 70 VYVPYTQGKWE--------------GELGTDLVSIPHGPQVTVRANIAAITESDKFFIQG 115
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSEVLASVGG 175
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 176 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 234
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 235 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 290
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 291 MGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 350
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 351 ARKRIGFAVSAC 362
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y Q +E G LG D++S + ++ + + + +
Sbjct: 87 VYV----PYCQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 251
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 252 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 307
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 308 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 367
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 368 ARKRIGFAVSAC 379
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 87 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 251
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 252 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 307
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 308 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSCGTVMGAVIMEGFYVVFDR 367
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 368 ARKRIGFAVSAC 379
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 12 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 66
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + + + + + +
Sbjct: 67 VYVPYTQGKWE--------------GELGTDLVSIPHGPQVTVRANIAAITESDKFFIQG 112
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 113 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSEVLASVGG 172
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSGT
Sbjct: 173 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGT 231
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 232 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP----WNIFPVISLYL 287
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 288 MGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 347
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 348 ARKRIGFAVSAC 359
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 162/375 (43%), Gaps = 56/375 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 87 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLD 300
+M++GGI ++T S P+R YY + + + + G+ L ++ K ++ +++D
Sbjct: 193 SMIIGGID---HSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVD 248
Query: 301 SGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVE 360
SGTT LP+ F A +I + + K G +C+ + + FP +
Sbjct: 249 SGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVIS 304
Query: 361 MAF-----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVM 413
+ ++ + P+ YL V + C + T +G +I+ V+
Sbjct: 305 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTCMGAVIMEGFYVV 364
Query: 414 YDREHSKIGFWKTNC 428
+DR +IGF + C
Sbjct: 365 FDRARKRIGFAVSAC 379
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 148/354 (41%), Gaps = 63/354 (17%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATC--EHCGDHQDPKFEPDLSSTYQPVKCNL 143
Y + IGTPP++F +I DTGS+ +V + C + C +H KF+P SSTY
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHN--KFKPRQSSTY------- 64
Query: 144 YCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQ 203
E + V + Y G+LG+D +S G SD + G E G +
Sbjct: 65 -----VETGKTV-DLTYG-TGGMRGILGQDTVSVGGGSDPNQE---LGESQTEPGPFQAA 114
Query: 204 HA-DGIIGL------GRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGISPPK 255
DGI+GL G + V D + + ++ D FS G G ++LGG+
Sbjct: 115 APFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSH 174
Query: 256 DMVFTHSDPVRS-PYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFL 314
H PV + Y+ + L I V G+ +G ++D+GT+ P
Sbjct: 175 YTGSIHWIPVTAEKYWQVALDGITVNGQTAAC-----EGCQ-AIVDTGTSKIVAP----- 223
Query: 315 AFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPE 374
+S L ++ + G N ++ G + V L D + NG K L P
Sbjct: 224 ------VSALANIMKDIGASENQGEMM--GNCASVQSLPDITFTI-----NGVKQPLPPS 270
Query: 375 NYLFRHSKVRGAYCL-GIFQNGRDPTT----LLGGIIVRNTLVMYDREHSKIGF 423
Y+ A+C G+ +G T + G + +RN +YDR ++K+GF
Sbjct: 271 AYIEGDQ----AFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGF 320
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 159/372 (42%), Gaps = 50/372 (13%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 32 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 86
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y Y + + +G LG D++S + ++ + + + +
Sbjct: 87 VYV-------------PYTQ-GAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFING 132
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVG--------GG 244
+ +GI+GL +++ D LV++ + + FS LC G + GG
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGG 192
Query: 245 AMVLGGISPPKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGT 303
+M++GGI P+R YY + + + + G+ L ++ K ++ +++DSG
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-YDKSIVDSGC 251
Query: 304 TYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF 363
T LP+ F A +I + + K G +C+ + + FP + +
Sbjct: 252 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYL 307
Query: 364 -----GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDR 416
++ + P+ YL V + C + T++G +I+ V++DR
Sbjct: 308 MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDR 367
Query: 417 EHSKIGFWKTNC 428
+IGF + C
Sbjct: 368 ARKRIGFAVSAC 379
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 62/356 (17%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQPVKC 141
Y + IGTPPQTF ++ DTGS+ +VP + C C H+ F+ SS+Y+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKHNGT 77
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
L +Y+ + SG L +DII+ G + + +FG E E L
Sbjct: 78 EL-------------TLRYS-TGTVSGFLSQDIITVGGITVTQ----MFG-EVTEMPALP 118
Query: 202 SQHA--DGIIGLGRGDLS------VVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISP 253
A DG++G+G + + + D ++ +GV+ + Y D GG +VLGG P
Sbjct: 119 FMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSLGGQIVLGGSDP 178
Query: 254 PK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAA 312
+ F + + +++ + I +K + V L ++D+G +Y ++
Sbjct: 179 QHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL-----ALVDTGASYISGSTSS 233
Query: 313 FLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLA 372
+ +M L + K++ +Y C G T P + G G++ L
Sbjct: 234 I----EKLMEALGAKKRLF----DYVVKCNEGP---------TLPDISFHLG-GKEYTLT 275
Query: 373 PENYLFRHSKVRGAYC-LGIFQNG----RDPTTLLGGIIVRNTLVMYDREHSKIGF 423
+Y+F+ S C L I PT LG +R +DR +++IGF
Sbjct: 276 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 331
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 162/386 (41%), Gaps = 74/386 (19%)
Query: 68 SHPNARMRLYD---DLLLNGYYTTRLW----IGTPPQTFALIVDTGSTVTYVPCATCEH- 119
S P R+ L + ++L Y T+ + IGTPPQTF ++ DTGS+ +VP + C
Sbjct: 38 SQPMKRLTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRL 97
Query: 120 ---CGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIIS 176
C H+ F+ SS+Y+ L +Y+ + SG L +DII+
Sbjct: 98 YTACVYHK--LFDASDSSSYKHNGTELTL-------------RYS-TGTVSGFLSQDIIT 141
Query: 177 FGNESDLKPQRAVFGCENVETGDLYSQHA--DGIIGLGRGDLS------VVDQLVEKGVI 228
G + + +FG E E L A DG++G+G + + + D ++ +GV+
Sbjct: 142 VGGITVTQ----MFG-EVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVL 196
Query: 229 S-DSFSLCYG----GMDVGGGAMVLGGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGK 282
D FS Y GG +VLGG P + F + + +++ + I +K + V
Sbjct: 197 KEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSS 256
Query: 283 PLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICF 342
L ++D+G +Y ++ + +M L + K++ +Y C
Sbjct: 257 TLLCEDGCL-----ALVDTGASYISGSTSSI----EKLMEALGAKKRLF----DYVVKCN 303
Query: 343 SGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYC-LGIFQNG----RD 397
G T P + G G++ L +Y+F+ S C L I
Sbjct: 304 EGP---------TLPDISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTG 353
Query: 398 PTTLLGGIIVRNTLVMYDREHSKIGF 423
PT LG +R +DR +++IGF
Sbjct: 354 PTWALGATFIRKFYTEFDRRNNRIGF 379
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 152/360 (42%), Gaps = 62/360 (17%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC 141
++ Y + IGTPPQ F ++ DTGS+ +VP C+ +F P SSTY
Sbjct: 10 MDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTY----- 64
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD-- 199
Q + +Y S +G G D ++ +S P + FG E G
Sbjct: 65 -------STNGQ-TFSLQYGS-GSLTGFFGYDTLTV--QSIQVPNQE-FGLSENEPGTNF 112
Query: 200 LYSQHADGIIGLGRGDLSV------VDQLVEKGVISDSFSLCYGGMDVG--GGAMVLGGI 251
+Y+Q DGI+GL LSV + +V++G ++ Y G GGA+V GG+
Sbjct: 113 VYAQF-DGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGV 171
Query: 252 SPPKDMVFTHSDPV-RSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
+ PV + Y+ I ++ + G+ + +G ++D+GT+ +P+
Sbjct: 172 DSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQA---SGWCSEGCQ-AIVDTGTSLLTVPQ 227
Query: 311 AAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLL 370
A A ++ Q N N I P++ NG +
Sbjct: 228 QYMSALLQATGAQEDEYGQFL---VNCNSI-------------QNLPSLTFII-NGVEFP 270
Query: 371 LAPENYLFRHSKVRGAYC-LGI------FQNGRDPTTLLGGIIVRNTLVMYDREHSKIGF 423
L P +Y+ ++ YC +G+ QNG+ P +LG + +R+ +YD ++++GF
Sbjct: 271 LPPSSYILSNN----GYCTVGVEPTYLSSQNGQ-PLWILGDVFLRSYYSVYDLGNNRVGF 325
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 151/361 (41%), Gaps = 67/361 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQPVKC 141
Y + IGTPPQTF ++ DTGS+ +VP + C C H+ F+ SS+Y+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKHNGT 77
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
L +Y+ + SG L +DII+ G + + +FG E E L
Sbjct: 78 EL-------------TLRYS-TGTVSGFLSQDIITVGGITVTQ----MFG-EVTEMPALP 118
Query: 202 SQHA--DGIIGLGRGDLS------VVDQLVEKGVI-SDSFSLCYG----GMDVGGGAMVL 248
A DG++G+G + + + D ++ +GV+ D FS Y GG +VL
Sbjct: 119 FMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVL 178
Query: 249 GGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAY 307
GG P + F + + +++ + I +K + V L ++D+G +Y
Sbjct: 179 GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL-----ALVDTGASYIS 233
Query: 308 LPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQ 367
++ + +M L + K++ +Y C G T P + G G+
Sbjct: 234 GSTSSI----EKLMEALGAKKRLF----DYVVKCNEGP---------TLPDISFHLG-GK 275
Query: 368 KLLLAPENYLFRHSKVRGAYC-LGIFQNG----RDPTTLLGGIIVRNTLVMYDREHSKIG 422
+ L +Y+F+ S C L I PT LG +R +DR +++IG
Sbjct: 276 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIG 335
Query: 423 F 423
F
Sbjct: 336 F 336
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 151/361 (41%), Gaps = 67/361 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQPVKC 141
Y + IGTPPQTF ++ DTGS+ +VP + C C H+ F+ SS+Y+
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKHNGT 73
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
L +Y+ + SG L +DII+ G + + +FG E E L
Sbjct: 74 EL-------------TLRYS-TGTVSGFLSQDIITVGGITVTQ----MFG-EVTEMPALP 114
Query: 202 SQHA--DGIIGLGRGDLS------VVDQLVEKGVI-SDSFSLCYG----GMDVGGGAMVL 248
A DG++G+G + + + D ++ +GV+ D FS Y GG +VL
Sbjct: 115 FMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVL 174
Query: 249 GGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAY 307
GG P + F + + +++ + I +K + V L ++D+G +Y
Sbjct: 175 GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL-----ALVDTGASYIS 229
Query: 308 LPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQ 367
++ + +M L + K++ +Y C G T P + G G+
Sbjct: 230 GSTSSI----EKLMEALGAKKRLF----DYVVKCNEGP---------TLPDISFHLG-GK 271
Query: 368 KLLLAPENYLFRHSKVRGAYC-LGIFQNG----RDPTTLLGGIIVRNTLVMYDREHSKIG 422
+ L +Y+F+ S C L I PT LG +R +DR +++IG
Sbjct: 272 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIG 331
Query: 423 F 423
F
Sbjct: 332 F 332
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 151/361 (41%), Gaps = 67/361 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQPVKC 141
Y + IGTPPQTF ++ DTGS+ +VP + C C H+ F+ SS+Y+
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKHNGT 70
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
L +Y+ + SG L +DII+ G + + +FG E E L
Sbjct: 71 EL-------------TLRYS-TGTVSGFLSQDIITVGGITVTQ----MFG-EVTEMPALP 111
Query: 202 SQHA--DGIIGLGRGDLS------VVDQLVEKGVI-SDSFSLCYG----GMDVGGGAMVL 248
A DG++G+G + + + D ++ +GV+ D FS Y GG +VL
Sbjct: 112 FMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVL 171
Query: 249 GGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAY 307
GG P + F + + +++ + I +K + V L ++D+G +Y
Sbjct: 172 GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL-----ALVDTGASYIS 226
Query: 308 LPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQ 367
++ + +M L + K++ +Y C G T P + G G+
Sbjct: 227 GSTSSI----EKLMEALGAKKRLF----DYVVKCNEGP---------TLPDISFHLG-GK 268
Query: 368 KLLLAPENYLFRHSKVRGAYC-LGIFQNG----RDPTTLLGGIIVRNTLVMYDREHSKIG 422
+ L +Y+F+ S C L I PT LG +R +DR +++IG
Sbjct: 269 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIG 328
Query: 423 F 423
F
Sbjct: 329 F 329
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 151/361 (41%), Gaps = 67/361 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQPVKC 141
Y + IGTPPQTF ++ DTGS+ +VP + C C H+ F+ SS+Y+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKHNGT 77
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
L +Y+ + SG L +DII+ G + + +FG E E L
Sbjct: 78 EL-------------TLRYS-TGTVSGFLSQDIITVGGITVTQ----MFG-EVTEMPALP 118
Query: 202 SQHA--DGIIGLGRGDLS------VVDQLVEKGVI-SDSFSLCYG----GMDVGGGAMVL 248
A DG++G+G + + + D ++ +GV+ D FS Y GG +VL
Sbjct: 119 FMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVL 178
Query: 249 GGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAY 307
GG P + F + + +++ + I +K + V L ++D+G +Y
Sbjct: 179 GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL-----ALVDTGASYIS 233
Query: 308 LPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQ 367
++ + +M L + K++ +Y C G T P + G G+
Sbjct: 234 GSTSSI----EKLMEALGAKKRLF----DYVVKCNEGP---------TLPDISFHLG-GK 275
Query: 368 KLLLAPENYLFRHSKVRGAYC-LGIFQNG----RDPTTLLGGIIVRNTLVMYDREHSKIG 422
+ L +Y+F+ S C L I PT LG +R +DR +++IG
Sbjct: 276 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIG 335
Query: 423 F 423
F
Sbjct: 336 F 336
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 151/361 (41%), Gaps = 67/361 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQPVKC 141
Y + IGTPPQTF ++ DTGS+ +VP + C C H+ F+ SS+Y+
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKHNGT 74
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
L +Y+ + SG L +DII+ G + + +FG E E L
Sbjct: 75 EL-------------TLRYS-TGTVSGFLSQDIITVGGITVTQ----MFG-EVTEMPALP 115
Query: 202 SQHA--DGIIGLGRGDLS------VVDQLVEKGVI-SDSFSLCYG----GMDVGGGAMVL 248
A DG++G+G + + + D ++ +GV+ D FS Y GG +VL
Sbjct: 116 FMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVL 175
Query: 249 GGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAY 307
GG P + F + + +++ + I +K + V L ++D+G +Y
Sbjct: 176 GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL-----ALVDTGASYIS 230
Query: 308 LPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQ 367
++ + +M L + K++ +Y C G T P + G G+
Sbjct: 231 GSTSSI----EKLMEALGAKKRLF----DYVVKCNEGP---------TLPDISFHLG-GK 272
Query: 368 KLLLAPENYLFRHSKVRGAYC-LGIFQNG----RDPTTLLGGIIVRNTLVMYDREHSKIG 422
+ L +Y+F+ S C L I PT LG +R +DR +++IG
Sbjct: 273 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIG 332
Query: 423 F 423
F
Sbjct: 333 F 333
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 143/361 (39%), Gaps = 61/361 (16%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC 141
LN Y T + +GTPPQ F +I+DTGS+ +VP C K++ + SS+Y K
Sbjct: 11 LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSY---KA 67
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
N + +Y S G + +D +S G DL + F E G +
Sbjct: 68 N----------GTEFAIQYG-TGSLEGYISQDTLSIG---DLTIPKQDFAEATSEPGLTF 113
Query: 202 S-QHADGIIGLGRGDLSVVDQLV-------EKGVISD---SFSLCYGGMDV-GGGAMVLG 249
+ DGI+GLG +S VD++V ++ ++ + +F L D GG G
Sbjct: 114 AFGKFDGILGLGYDTIS-VDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFG 172
Query: 250 GISPPKDMVFTHSDPV-RSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYL 308
GI K PV R Y+ + + I + + L HG +D+GT+ L
Sbjct: 173 GIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELE------SHGAAIDTGTSLITL 226
Query: 309 PEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQK 368
P + I +E+ + K G Y C D P + F NG
Sbjct: 227 PS----GLAEMINAEIGAKKGWTG---QYTLDC---------NTRDNLPDLIFNF-NGYN 269
Query: 369 LLLAPENYLFRHSKVRGAYCLGI----FQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFW 424
+ P +Y +V G+ I F P ++G +R +YD ++ +G
Sbjct: 270 FTIGPYDYTL---EVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326
Query: 425 K 425
K
Sbjct: 327 K 327
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 143/361 (39%), Gaps = 61/361 (16%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC 141
LN Y T + +GTPPQ F +I+DTGS+ +VP C K++ + SS+Y K
Sbjct: 11 LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSY---KA 67
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
N + +Y S G + +D +S G DL + F E G +
Sbjct: 68 N----------GTEFAIQYG-TGSLEGYISQDTLSIG---DLTIPKQDFAEATSEPGLTF 113
Query: 202 S-QHADGIIGLGRGDLSVVDQLV-------EKGVISD---SFSLCYGGMDV-GGGAMVLG 249
+ DGI+GLG +S VD++V ++ ++ + +F L D GG G
Sbjct: 114 AFGKFDGILGLGYDTIS-VDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFG 172
Query: 250 GISPPKDMVFTHSDPV-RSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYL 308
GI K PV R Y+ + + I + + L HG +D+GT+ L
Sbjct: 173 GIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELE------SHGAAIDTGTSLITL 226
Query: 309 PEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQK 368
P + I +E+ + K G Y C D P + F NG
Sbjct: 227 PS----GLAEMINAEIGAKKGSTG---QYTLDC---------NTRDNLPDLIFNF-NGYN 269
Query: 369 LLLAPENYLFRHSKVRGAYCLGI----FQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFW 424
+ P +Y +V G+ I F P ++G +R +YD ++ +G
Sbjct: 270 FTIGPYDYTL---EVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326
Query: 425 K 425
K
Sbjct: 327 K 327
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 143/361 (39%), Gaps = 61/361 (16%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC 141
LN Y T + +GTPPQ F +I+DTGS+ +VP C K++ + SS+Y K
Sbjct: 11 LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSY---KA 67
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
N + +Y S G + +D +S G DL + F E G +
Sbjct: 68 N----------GTEFAIQYG-TGSLEGYISQDTLSIG---DLTIPKQDFAEATSEPGLTF 113
Query: 202 S-QHADGIIGLGRGDLSVVDQLV-------EKGVISD---SFSLCYGGMDV-GGGAMVLG 249
+ DGI+GLG +S VD++V ++ ++ + +F L D GG G
Sbjct: 114 AFGKFDGILGLGYDTIS-VDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFG 172
Query: 250 GISPPKDMVFTHSDPV-RSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYL 308
GI K PV R Y+ + + I + + L HG +D+GT+ L
Sbjct: 173 GIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELE------SHGAAIDTGTSLITL 226
Query: 309 PEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQK 368
P + I +E+ + K G Y C D P + F NG
Sbjct: 227 PS----GLAEMINAEIGAKKGWTG---QYTLDC---------NTRDNLPDLIFNF-NGYN 269
Query: 369 LLLAPENYLFRHSKVRGAYCLGI----FQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFW 424
+ P +Y +V G+ I F P ++G +R +YD ++ +G
Sbjct: 270 FTIGPYDYTL---EVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGNNAVGLA 326
Query: 425 K 425
K
Sbjct: 327 K 327
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 63/362 (17%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQ 137
LN Y + IGTPPQTF +I DTGS +VP C CG H +E SS+Y
Sbjct: 13 LNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHS--LYESSDSSSYM 70
Query: 138 PVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFG-CENVE 196
+ + R + G L +D ++ G + + FG +
Sbjct: 71 ENGDDFTIHYGSGRVK--------------GFLSQDSVTVGGITVTQ----TFGEVTQLP 112
Query: 197 TGDLYSQHADGIIGLG------RGDLSVVDQLVEKGVISDS-FSLCYG-GMDVGGGAMVL 248
DG++G+G G V D ++ +GV+ + FS+ Y G + GG +VL
Sbjct: 113 LIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVL 172
Query: 249 GGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAY 307
GG P F + ++ + I +K + V L + + V+D+G+++
Sbjct: 173 GGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTL-----LCEEGCEVVVDTGSSFIS 227
Query: 308 LPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQ 367
P ++ A+ ++ + L + Y C SQ+ T P + G G+
Sbjct: 228 APTSSLKLIMQALGAKEKRLHE-------YVVSC--------SQVP-TLPDISFNLG-GR 270
Query: 368 KLLLAPENYLFRHSKVRGAYCLGIFQNGRD------PTTLLGGIIVRNTLVMYDREHSKI 421
L+ +Y+ ++ R C + + D P +LG +R +DR +++I
Sbjct: 271 AYTLSSTDYVLQYPNRRDKLCT-VALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRI 329
Query: 422 GF 423
GF
Sbjct: 330 GF 331
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 24/151 (15%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYC 145
Y ++ IGTP + F L DTGS+ ++ C +CG Q K++P+ SSTYQ
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQ-TKYDPNQSSTYQ-------- 67
Query: 146 NCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA 205
D + Y + SS+SG+L +D ++ G L + E S
Sbjct: 68 -ADGR----TWSISYGDGSSASGILAKDNVNLGG---LLIKGQTIELAKREAASFASGPN 119
Query: 206 DGIIGLG-------RGDLSVVDQLVEKGVIS 229
DG++GLG RG + +D L+ +G+IS
Sbjct: 120 DGLLGLGFDTITTVRGVKTPMDNLISQGLIS 150
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 135/344 (39%), Gaps = 55/344 (15%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
IGT Q F I DTGS +VP C+ G ++ S +Y+ D +
Sbjct: 22 IGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEK---------DGTK 72
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS-QHADGIIG 210
+ Y + G +D+IS G+ S P + + + + +YS DGI+G
Sbjct: 73 VEISYGS-----GTVRGYFSKDVISLGDLS--LPYKFIEVTDADDLEPIYSGSEFDGILG 125
Query: 211 LGRGDLS------VVDQLVEKGVISDS-FSLCYGGMDVGGGAMVLGGI-SPPKDMVFTHS 262
LG DLS VV +L ++ I ++ F+ D G + +GGI S + T+
Sbjct: 126 LGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVHDKHVGYLTIGGIESDFYEGPLTYE 185
Query: 263 DPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMS 322
Y+ IDL IH K K V+DSGT+ P + F
Sbjct: 186 KLNHDLYWQIDLD-IHFG--------KYVMQKANAVVDSGTSTITAPTSFLNKF------ 230
Query: 323 ELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHS 381
+ + I+ P P Y C +D P +E N K L PE Y+ S
Sbjct: 231 -FRDMNVIKVPFLPLYVTTC----------DNDDLPTLEFHSRN-NKYTLEPEFYMDPLS 278
Query: 382 KVRGAYCLGIFQ--NGRDPTTLLGGIIVRNTLVMYDREHSKIGF 423
+ A C+ + D T +LG +R ++D E +GF
Sbjct: 279 DIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESVGF 322
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 143/375 (38%), Gaps = 48/375 (12%)
Query: 84 GYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDP---KFEPDLSSTYQPVK 140
G + L TP ++VD +V C +Q P + ++T+Q +
Sbjct: 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLS 80
Query: 141 CNLYCNCDRERAQC-VYERKYAEMSSSSGVLGEDIISF----GNESDLKPQRAV----FG 191
C + C + + G LGED+++ G+ L P V F
Sbjct: 81 CPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFS 140
Query: 192 CEN---VETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVL 248
C V+ G ++ G+ GLG +S+ +QL + F+ C GA++
Sbjct: 141 CAPSFLVQKG--LPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIF 198
Query: 249 GGISPPK-----------DMVFTHSDPVRSPYYNIDLKVIHVAGKPL-PLNP----KVFD 292
G +P D+ FT YN+ + I + + PLN V
Sbjct: 199 GD-APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGS 257
Query: 293 GKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQL 352
GT++ + T + L ++ + AF +L Q++ P +CF+ S
Sbjct: 258 TSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAP--FGLCFN------SNK 309
Query: 353 SDTFPAVEMAFG--NGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTT--LLGGIIVR 408
+ +P+V++ NG ++ E+ + + G CLG+ G P LG +
Sbjct: 310 INAYPSVDLVMDKPNGPVWRISGEDLMVQAQP--GVTCLGVMNGGMQPRAEITLGARQLE 367
Query: 409 NTLVMYDREHSKIGF 423
LV++D S++GF
Sbjct: 368 ENLVVFDLARSRVGF 382
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 24/151 (15%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYC 145
Y ++ IGTP + F L DTGS+ ++ C +CG Q K++P+ SSTYQ
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQ-TKYDPNQSSTYQ-------- 67
Query: 146 NCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA 205
D + Y + SS+SG+L +D ++ G L + E S
Sbjct: 68 -ADGR----TWSISYGDGSSASGILAKDNVNLGG---LLIKGQTIELAKREAASFASGPN 119
Query: 206 DGIIGLG-------RGDLSVVDQLVEKGVIS 229
DG++GLG RG + +D L+ +G+IS
Sbjct: 120 DGLLGLGFDTITTVRGVKTPMDNLISQGLIS 150
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 153/367 (41%), Gaps = 54/367 (14%)
Query: 83 NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
GYY + +G+PPQT ++VDTGS+ V A H H+ ++ LSSTY+ ++
Sbjct: 18 QGYYV-EMTVGSPPQTLNILVDTGSSNFAVGAAP--HPFLHR--YYQRQLSSTYRDLRKG 72
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+Y + + + G LG D++S + ++ + + + +
Sbjct: 73 VYVPYTQGKWE--------------GELGTDLVSIPHGPNVTVRANIAAITESDKFFING 118
Query: 203 QHADGIIGLGRGDLS--------VVDQLVEKGVISDSFS--LCYGGMDVGGGAMVLGGIS 252
+ +GI+GL +++ D LV++ + + FS LC I
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLC---------GGGSMIIG 169
Query: 253 PPKDMVFTHS---DPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYL 308
++T S P+R YY + + + + G+ L ++ K ++ +++DSGTT L
Sbjct: 170 GIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRL 228
Query: 309 PEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAF----- 363
P+ F A +I + + K G +C+ + + FP + +
Sbjct: 229 PKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPW----NIFPVISLYLMGEVT 284
Query: 364 GNGQKLLLAPENYLFRHSKVRGAY--CLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKI 421
++ + P+ YL V + C + T++G +I+ V++DR +I
Sbjct: 285 NQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRI 344
Query: 422 GFWKTNC 428
GF + C
Sbjct: 345 GFAVSAC 351
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 142/360 (39%), Gaps = 60/360 (16%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTY-QPVK 140
L+ Y + IG+PPQ F +I DTGS+ +VP C +F+P SSTY QP +
Sbjct: 21 LDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQ 80
Query: 141 CNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDL 200
+ +Y S SG++G D +S + + Q FG E G
Sbjct: 81 S--------------FSIQYG-TGSLSGIIGADQVSVEGLTVVGQQ---FGESVTEPGQT 122
Query: 201 Y-SQHADGIIGLGRGDLS------VVDQLVEKGVISDSFSLCYGGMDVGGGA---MVLGG 250
+ DGI+GLG L+ V D ++ + ++ Y + GGA ++ GG
Sbjct: 123 FVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGG 182
Query: 251 ISPPKDMVFTHSDPV-RSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLP 309
+ PV + Y+ I L I V G + + +G ++D+GT+ P
Sbjct: 183 YDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCS----EGCQ-AIVDTGTSLITGP 237
Query: 310 EAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKL 369
+++ L+ G P + A +V P V NG
Sbjct: 238 S-----------DKIKQLQNAIGAAPVDGEYAVECANLNV------MPDVTFTI-NGVPY 279
Query: 370 LLAPENYLFRHSKVRGAYCLGIFQNGRD------PTTLLGGIIVRNTLVMYDREHSKIGF 423
L+P Y +C FQ G D P +LG + +R ++DR ++++G
Sbjct: 280 TLSPTAYTLLDFVDGMQFCSSGFQ-GLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGL 338
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 138/364 (37%), Gaps = 73/364 (20%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCA--TCEHCGDHQDPKF-------EPDLSSTY 136
Y + IG+ Q F +IVDTGS+ +VP A TC+ Q F P S+T
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTS 73
Query: 137 QPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVE 196
Q + Y Y + SSS G L +D + FG S K A ++
Sbjct: 74 QNLGTPFYIG-------------YGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIP 120
Query: 197 TGDLYSQHADGIIGLG------RGDLSVVD-QLVEKGVIS-DSFSLCYGGMDVGGGAMVL 248
GI+G+G GD V L +GVI+ +++SL + G ++
Sbjct: 121 ---------QGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAATGQIIF 171
Query: 249 GGISPPKDMVFTHSDPVRSPY-YNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAY 307
GG+ K + PV S I L + GK + N V +LDSGTT Y
Sbjct: 172 GGVDKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNINGNIDV-------LLDSGTTITY 224
Query: 308 LPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQ 367
L + DA +EL+S Q G D SG V+ F N
Sbjct: 225 LQQDVAQDIIDAFQAELKSDGQ--GHTFYVTDCQTSG-------------TVDFNFDNNA 269
Query: 368 KL------LLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKI 421
K+ AP +Y + LGI +LG +R+ ++YD + KI
Sbjct: 270 KISVPASEFTAPLSYANGQPYPKCQLLLGI-----SDANILGDNFLRSAYLVYDLDDDKI 324
Query: 422 GFWK 425
+
Sbjct: 325 SLAQ 328
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 137/348 (39%), Gaps = 65/348 (18%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F I+DTGS +VP C G ++ S TY E+
Sbjct: 146 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY-------------EK 192
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA----DG 207
E Y + SG +D+++ GN S P + + E ++T + DG
Sbjct: 193 DGTKVEMNYVS-GTVSGFFSKDLVTVGNLS--LPYKFI---EVIDTNGFEPTYTASTFDG 246
Query: 208 IIGLGRGDLS------VVDQLVEKGVISDS-FSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS +V +L + I ++ F+ D G + +GGI +
Sbjct: 247 ILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPL 306
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ I L HV L K ++DSGT+ +P D
Sbjct: 307 TYEKLNHDLYWQITLDA-HVGNIMLE--------KANCIVDSGTSAITVP-------TDF 350
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+ LQ+L I+ P P Y +C + S+L P E NG K L PE YL
Sbjct: 351 LNKMLQNLDVIKVPFLPFYVTLC------NNSKL----PTFEFTSENG-KYTLEPEYYLQ 399
Query: 379 RHSKVRGAYC-LGIFQNGRD---PTTLLGGIIVRNTLVMYDREHSKIG 422
V C L I G D PT +LG +R ++D ++ +G
Sbjct: 400 HIEDVGPGLCMLNII--GLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 445
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 137/348 (39%), Gaps = 65/348 (18%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F I+DTGS +VP C G ++ S TY E+
Sbjct: 22 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY-------------EK 68
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA----DG 207
E Y + SG +D+++ GN S P + + E ++T + DG
Sbjct: 69 DGTKVEMNYVS-GTVSGFFSKDLVTVGNLS--LPYKFI---EVIDTNGFEPTYTASTFDG 122
Query: 208 IIGLGRGDLS------VVDQLVEKGVISDS-FSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS +V +L + I ++ F+ D G + +GGI +
Sbjct: 123 ILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPL 182
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ I L HV L K ++DSGT+ +P D
Sbjct: 183 TYEKLNHDLYWQITLDA-HVGNISLE--------KANCIVDSGTSAITVP-------TDF 226
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+ LQ+L I+ P P Y +C + S+L P E NG K L PE YL
Sbjct: 227 LNKMLQNLDVIKVPFLPFYVTLC------NNSKL----PTFEFTSENG-KYTLEPEYYLQ 275
Query: 379 RHSKVRGAYC-LGIFQNGRD---PTTLLGGIIVRNTLVMYDREHSKIG 422
V C L I G D PT +LG +R ++D ++ +G
Sbjct: 276 HIEDVGPGLCMLNII--GLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 321
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 137/348 (39%), Gaps = 65/348 (18%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F I+DTGS +VP C G ++ S TY E+
Sbjct: 24 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY-------------EK 70
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA----DG 207
E Y + SG +D+++ GN S P + + E ++T + DG
Sbjct: 71 DGTKVEMNYVS-GTVSGFFSKDLVTVGNLS--LPYKFI---EVIDTNGFEPTYTASTFDG 124
Query: 208 IIGLGRGDLSV--VDQLV-----EKGVISDSFSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS+ VD +V + + + F+ D G + +GGI +
Sbjct: 125 ILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPL 184
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ I L HV L K ++DSGT+ +P D
Sbjct: 185 TYEKLNHDLYWQITLDA-HVGNISLE--------KANCIVDSGTSAITVP-------TDF 228
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+ LQ+L I+ P P Y +C + S+L P E NG K L PE YL
Sbjct: 229 LNKMLQNLDVIKVPFLPFYVTLC------NNSKL----PTFEFTSENG-KYTLEPEYYLQ 277
Query: 379 RHSKVRGAYC-LGIFQNGRD---PTTLLGGIIVRNTLVMYDREHSKIG 422
V C L I G D PT +LG +R ++D ++ +G
Sbjct: 278 HIEDVGPGLCMLNII--GLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 323
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 146/356 (41%), Gaps = 66/356 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCA--TCEHCGDHQDPKFEPDLSSTYQPVKCNL 143
Y + + +G+ Q +++DTGS+ +VP + +C+ G QDP F + TY P +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQ-AGQGQDPNFCKN-EGTYSPSSSSS 71
Query: 144 YCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQ 203
N + + +Y + ++S G +D I FG S K Q A D+ S
Sbjct: 72 SQNLNSP-----FSIEYGDGTTSQGTWYKDTIGFGGISITKQQFA----------DVTST 116
Query: 204 HAD-GIIGLG------RGDLSVVD-QLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGISPP 254
D GI+G+G G+ V L +G+IS +++SL G ++ GG+
Sbjct: 117 SVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQATSGQIIFGGVDNA 176
Query: 255 KDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAF 313
K + PV S I L + VAG+ + + V +LDSGTT YL +
Sbjct: 177 KYSGTLIALPVTSDNELRIHLNTVKVAGQSINADVDV-------LLDSGTTITYLQQGV- 228
Query: 314 LAFKDAIMSELQSLKQIRGPDPNYN-----DICFSGAPSDVSQLSDTFPAVEMAFGNGQK 368
D ++S + D N N D SG +V+ AF K
Sbjct: 229 ---ADQVISAFNGQETY---DANGNLFYLVDCNLSG-------------SVDFAFDKNAK 269
Query: 369 LLLAPENY---LFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKI 421
+ + + L+ C +F G +LG +R+ ++YD + ++I
Sbjct: 270 ISVPASEFTAPLYTEDGQVYDQCQLLF--GTSDYNILGDNFLRSAYIVYDLDDNEI 323
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 137/348 (39%), Gaps = 65/348 (18%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F I+DTGS +VP C G ++ S TY E+
Sbjct: 24 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY-------------EK 70
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA----DG 207
E Y + SG +D+++ GN S P + + E ++T + DG
Sbjct: 71 DGTKVEMNYVS-GTVSGFFSKDLVTVGNLS--LPYKFI---EVIDTNGFEPTYTASTFDG 124
Query: 208 IIGLGRGDLSV--VDQLV-----EKGVISDSFSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS+ VD +V + + + F+ D G + +GGI +
Sbjct: 125 ILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPL 184
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ I L HV L K ++DSGT+ +P D
Sbjct: 185 TYEKLNHDLYWQITLDA-HVGNIMLE--------KANCIVDSGTSAITVP-------TDF 228
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+ LQ+L I+ P P Y +C + S+L P E NG K L PE YL
Sbjct: 229 LNKMLQNLDVIKVPFLPFYVTLC------NNSKL----PTFEFTSENG-KYTLEPEYYLQ 277
Query: 379 RHSKVRGAYC-LGIFQNGRD---PTTLLGGIIVRNTLVMYDREHSKIG 422
V C L I G D PT +LG +R ++D ++ +G
Sbjct: 278 HIEDVGPGLCMLNII--GLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 323
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 137/348 (39%), Gaps = 65/348 (18%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F I+DTGS +VP C G ++ S TY E+
Sbjct: 73 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY-------------EK 119
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA----DG 207
E Y + SG +D+++ GN S P + + E ++T + DG
Sbjct: 120 DGTKVEMNYVS-GTVSGFFSKDLVTVGNLS--LPYKFI---EVIDTNGFEPTYTASTFDG 173
Query: 208 IIGLGRGDLS------VVDQLVEKGVISDS-FSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS +V +L + I ++ F+ D G + +GGI +
Sbjct: 174 ILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPL 233
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ I L HV L K ++DSGT+ +P D
Sbjct: 234 TYEKLNHDLYWQITLDA-HVGNIMLE--------KANCIVDSGTSAITVP-------TDF 277
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+ LQ+L I+ P P Y +C + S+L P E NG K L PE YL
Sbjct: 278 LNKMLQNLDVIKVPFLPFYVTLC------NNSKL----PTFEFTSENG-KYTLEPEYYLQ 326
Query: 379 RHSKVRGAYC-LGIFQNGRD---PTTLLGGIIVRNTLVMYDREHSKIG 422
V C L I G D PT +LG +R ++D ++ +G
Sbjct: 327 HIEDVGPGLCMLNII--GLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 372
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 137/348 (39%), Gaps = 65/348 (18%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F I+DTGS +VP C G ++ S TY E+
Sbjct: 22 VGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY-------------EK 68
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHA----DG 207
E Y + SG +D+++ GN S P + + E ++T + DG
Sbjct: 69 DGTKVEMNYVS-GTVSGFFSKDLVTVGNLS--LPYKFI---EVIDTNGFEPTYTASTFDG 122
Query: 208 IIGLGRGDLSV--VDQLV-----EKGVISDSFSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS+ VD +V + + + F+ D G + +GGI +
Sbjct: 123 ILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPL 182
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ I L HV L K ++DSGT+ +P D
Sbjct: 183 TYEKLNHDLYWQITLDA-HVGNIMLE--------KANCIVDSGTSAITVP-------TDF 226
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+ LQ+L I+ P P Y +C + S+L P E NG K L PE YL
Sbjct: 227 LNKMLQNLDVIKVPFLPFYVTLC------NNSKL----PTFEFTSENG-KYTLEPEYYLQ 275
Query: 379 RHSKVRGAYC-LGIFQNGRD---PTTLLGGIIVRNTLVMYDREHSKIG 422
V C L I G D PT +LG +R ++D ++ +G
Sbjct: 276 HIEDVGPGLCMLNII--GLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 321
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 153/393 (38%), Gaps = 68/393 (17%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC---- 141
Y T + TP + L+VD G +V C D + +SSTY+PV+C
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDC----------DQNY---VSSTYRPVRCRTSQ 68
Query: 142 -----NLYC-NC-DRERAQC------VYERKYAEMSSSSGVLGEDIISF----GNESD-- 182
++ C +C + R C V+ +++ G + ED++S G+ S
Sbjct: 69 CSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRV 128
Query: 183 LKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVG 242
+ R +F C + G+ GLGR +++ Q F++C G
Sbjct: 129 VTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSS 188
Query: 243 GGAMVLGG---------ISPPKDMVFT--HSDPVR----------SPYYNIDLKVIHVAG 281
++ G I K + +T ++PV S Y I +K I +
Sbjct: 189 NSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINS 248
Query: 282 KPLPLNPKVFD----GKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNY 337
K + LN + G GT + + Y L + + A +A + E + R
Sbjct: 249 KIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP 308
Query: 338 NDICFSGAPSDVSQLSDTFPAVEMAFGNGQKL--LLAPENYLFRHSKVRGAYCLGIFQNG 395
CFS ++L + P++++ + + + + ++ + V CLG+ G
Sbjct: 309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNV---VCLGVVDGG 365
Query: 396 RDPTT--LLGGIIVRNTLVMYDREHSKIGFWKT 426
+ T ++GG + + LV +D S++GF T
Sbjct: 366 SNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT 398
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 153/393 (38%), Gaps = 68/393 (17%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC---- 141
Y T + TP + L+VD G +V C D + +SSTY+PV+C
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDC----------DQNY---VSSTYRPVRCRTSQ 68
Query: 142 -----NLYC-NC-DRERAQC------VYERKYAEMSSSSGVLGEDIISF----GNESD-- 182
++ C +C + R C V+ +++ G + ED++S G+ S
Sbjct: 69 CSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRV 128
Query: 183 LKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVG 242
+ R +F C + G+ GLGR +++ Q F++C G
Sbjct: 129 VTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSS 188
Query: 243 GGAMVLGG---------ISPPKDMVFT--HSDPVR----------SPYYNIDLKVIHVAG 281
++ G I K + +T ++PV S Y I +K I +
Sbjct: 189 NSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINS 248
Query: 282 KPLPLNPKVFD----GKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNY 337
K + LN + G GT + + Y L + + A +A + E + R
Sbjct: 249 KIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP 308
Query: 338 NDICFSGAPSDVSQLSDTFPAVEMAFGNGQKL--LLAPENYLFRHSKVRGAYCLGIFQNG 395
CFS ++L + P++++ + + + + ++ + V CLG+ G
Sbjct: 309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNV---VCLGVVDGG 365
Query: 396 RDPTT--LLGGIIVRNTLVMYDREHSKIGFWKT 426
+ T ++GG + + LV +D S++GF T
Sbjct: 366 SNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT 398
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 132/347 (38%), Gaps = 61/347 (17%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F LI DTGS +VP C G ++ S +Y+ D +
Sbjct: 24 VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEK---------DGTK 74
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY----SQHADG 207
Y + G +D+++ G+ S P + + E ++T DL S DG
Sbjct: 75 VDITYGS-----GTVKGFFSKDLVTLGHLS--MPYKFI---EVIDTDDLEPIYSSVEFDG 124
Query: 208 IIGLGRGDLS------VVDQLVEKGVISDS-FSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS +V +L + I ++ F+ DV G + +GGI +
Sbjct: 125 ILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNI 184
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ IDL V H + + K ++DSGTT P F
Sbjct: 185 TYEKLNHDLYWQIDLDV-HFGKQTME--------KANVIVDSGTTTITAPSEFLNKF--- 232
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+L I+ P P Y C D ++ P +E N L PE Y+
Sbjct: 233 ----FANLNVIKVPFLPFYVTTC------DNKEM----PTLEFKSAN-NTYTLEPEYYMN 277
Query: 379 RHSKVRGAYCLGIF--QNGRDPTTLLGGIIVRNTLVMYDREHSKIGF 423
+V C+ + T +LG +R ++D + +GF
Sbjct: 278 PILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGF 324
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 131/347 (37%), Gaps = 61/347 (17%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F LI DTGS +VP C G ++ S +Y+ D +
Sbjct: 70 VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEK---------DGTK 120
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY----SQHADG 207
Y + G +D+++ G+ S P + + E +T DL S DG
Sbjct: 121 VDITYGS-----GTVKGFFSKDLVTLGHLS--MPYKFI---EVTDTDDLEPIYSSVEFDG 170
Query: 208 IIGLGRGDLS------VVDQLVEKGVISDS-FSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS +V +L + I ++ F+ DV G + +GGI +
Sbjct: 171 ILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNI 230
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ Y+ IDL V H + + K ++DSGTT P F
Sbjct: 231 TYEKLNHDLYWQIDLDV-HFGKQTME--------KANVIVDSGTTTITAPSEFLNKF--- 278
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+L I+ P P Y C D ++ P +E N L PE Y+
Sbjct: 279 ----FANLNVIKVPFLPFYVTTC------DNKEM----PTLEFKSANNT-YTLEPEYYMN 323
Query: 379 RHSKVRGAYCLGIFQ--NGRDPTTLLGGIIVRNTLVMYDREHSKIGF 423
+V C+ + T +LG +R ++D + +GF
Sbjct: 324 PILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGF 370
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 143/347 (41%), Gaps = 48/347 (13%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYC 145
Y +++ +G+ Q +I+DTGS+ +V + + CG D K S T+ P + Y
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQ-CGKGVDCK----SSGTFTPSSSSSYK 68
Query: 146 NCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDL---YS 202
N + +Y + S+S G G+D ++ S Q A +V+ G L Y+
Sbjct: 69 NLG-----AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSVDQGILGIGYT 123
Query: 203 QHADGIIGLGRGDLSVVDQ----LVEKGVI-SDSFSLCYGGMDVGGGAMVLGGISPPKDM 257
+ GR D L ++G I ++++SL G ++ GG+ K
Sbjct: 124 SNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYS 183
Query: 258 VFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE--AAFLA 315
++ V S + + ++ + L F G +LDSGTT Y P AA LA
Sbjct: 184 GKLVAEQVTSS------QALTISLASVNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLA 237
Query: 316 FK-DAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPE 374
K A + ++ + + D N +DT FGNG K+ +
Sbjct: 238 DKAGARLVQVARDQYLYFIDCN----------------TDTSGTTVFNFGNGAKITVPNT 281
Query: 375 NYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKI 421
Y++++ CL Q D T+LG +R+ ++Y+ + + I
Sbjct: 282 EYVYQNGD---GTCLWGIQPSDD--TILGDNFLRHAYLLYNLDANTI 323
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 111/254 (43%), Gaps = 39/254 (15%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH---CGDHQDPKFEPDLSSTYQP 138
+N Y + +GTPPQ F +I DTGS+ +VP A C C H +++ SSTY+
Sbjct: 50 MNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHS--RYKAGASSTYKK 107
Query: 139 VKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETG 198
+ + A Y S +G ED ++ G DL + F E G
Sbjct: 108 ---------NGKPAAIQY-----GTGSIAGYFSEDSVTVG---DLVVKDQEFIEATKEPG 150
Query: 199 DLY-SQHADGIIGLGRGDLSVVD------QLVEKGVISD---SFSLCYGGMDVGGGAMVL 248
+ DGI+GLG ++SV +++E+G++SD SF L +D G G ++
Sbjct: 151 ITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNR-HVDEGEGGEII 209
Query: 249 GGISPPKDMVFTHS-DPV-RSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYA 306
G PK V H+ PV + Y+ D+ + V GK + G + DSGT+
Sbjct: 210 FGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGK----STGFCAGGCAAIADSGTSLL 265
Query: 307 YLPEAAFLAFKDAI 320
P A + I
Sbjct: 266 AGPTAIITEINEKI 279
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 355 TFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNG-----RDPTTLLGGIIVRN 409
+ P +E G G+K L PE Y+ + + A C+ F R P +LG + +
Sbjct: 402 SMPDIEFTIG-GKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGP 460
Query: 410 TLVMYDREHSKIGFWKT 426
++D +IGF K
Sbjct: 461 YHTVFDYGKLRIGFAKA 477
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 144/361 (39%), Gaps = 81/361 (22%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYV--PCATCE--HCGD-----HQDPKFEPDLSSTY 136
Y + +G+ Q +++DTGS+ +V A C+ + G Q+ F+P SS+
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 137 QPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVE 196
Q + + + +Y +++SS G +D + FG S +N +
Sbjct: 74 QNLNQD-------------FSIEYGDLTSSQGSFYKDTVGFGGIS----------IKNQQ 110
Query: 197 TGDLYSQHAD-GIIGLG----RGDLSVVDQ----LVEKGVIS-DSFSLCYGGMDVGGGAM 246
D+ + D GI+G+G ++ D L ++G+I+ +++SL D G +
Sbjct: 111 FADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKI 170
Query: 247 VLGGISPPKDMVFTHSDPVRSPYYNIDLKV----IHVAGKPLPLNPKVFDGKHGTVLDSG 302
+ GG+ K + PV S ++L+V I+ G + N V VLDSG
Sbjct: 171 IFGGVDNAKYTGTLTALPVTSS---VELRVHLGSINFDGTSVSTNADV-------VLDSG 220
Query: 303 TTYAYLPEAAFLAFKDAIMSELQSLKQI-RGPDPNYN-DICFSGAPSDVSQLSDTFPAVE 360
TT Y ++ F + + S +I R P + + D F+
Sbjct: 221 TTITYFSQSTADKFARIVGATWDSRNEIYRLPSCDLSGDAVFN----------------- 263
Query: 361 MAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSK 420
F G K+ + + + S Y F R+ +LG +R ++YD +
Sbjct: 264 --FDQGVKITVPLSELILKDSDSSICY----FGISRNDANILGDNFLRRAYIVYDLDDKT 317
Query: 421 I 421
I
Sbjct: 318 I 318
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 147/358 (41%), Gaps = 68/358 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDL------SSTYQPV 139
YT + +G+ Q +IVDTGS+ ++P + PK+ D + +Y P
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICI-----PKWRGDKGDFCKSAGSYSPA 68
Query: 140 KCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD 199
N + ++ KY + S + G L +D + G S ++ Q +F +
Sbjct: 69 SSRTSQNLNTR-----FDIKYGDGSYAKGKLYKDTVGIGGVS-VRDQ--LF-------AN 113
Query: 200 LYSQHA-DGIIGLG--RGDLSVVD------QLVEKGVISD-SFSLCYGGMDVGGGAMVLG 249
++S A GI+G+G G+ + D L +G+I ++SL + G ++ G
Sbjct: 114 VWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFG 173
Query: 250 GISPPKDMVFTHSDPVRS-PYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYL 308
GI K P+ S + L+ ++V G+ + N V +LDSGTT +Y
Sbjct: 174 GIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDANTNV-------LLDSGTTISYF 226
Query: 309 PEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSD--TFPAVEMAFGNG 366
+ AI ++++ F A + V ++D T ++ FGN
Sbjct: 227 TRSIVRNILYAIGAQMK----------------FDSAGNKV-YVADCKTSGTIDFQFGNN 269
Query: 367 QKLLLAPENYLFRHSKVRGA---YCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKI 421
K+ + +LF+ G C + D +LG +R+ V+Y+ + KI
Sbjct: 270 LKISVPVSEFLFQTYYTSGKPFPKCEVRIRESED--NILGDNFLRSAYVVYNLDDKKI 325
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATC---EHCGDHQDPKFEPDLSSTYQPVKCN 142
Y + IGTPPQ F +I DTGS+V +VP + C + C H +E SSTY+
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS--MYESSDSSTYKE---- 68
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYS 202
+ +Y S +G +D ++ G DL + F E + D
Sbjct: 69 -----NGTFGAIIY-----GTGSITGFFSQDSVTIG---DLVVKEQDF-IEATDEADNVF 114
Query: 203 QHA--DGIIGLGRGDLS--VVDQLVEKGVISD---SFSLCYGGMDVGGGAMVLGGISP 253
H DGI+GL +S V ++ +G++ + SF L + GG +V GG+ P
Sbjct: 115 LHRLFDGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDP 172
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 101/270 (37%), Gaps = 49/270 (18%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVP---CATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
Y + IGTP Q F L+ DTGS+ T+VP C E C + F+P SST++ N
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSR--FFDPSASSTFKATNYN 77
Query: 143 LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFG------CENVE 196
L A +Y ED I+ G+ + K A E
Sbjct: 78 LNITYGTGGANGLYF--------------EDSIAIGDITVTKQILAYVDNVRGPTAEQSP 123
Query: 197 TGDLYSQHADGIIGLGRGDLSVVD------------QLVEKGVISDSFSLCYGGMDVGGG 244
D++ DG+ G D + ++ L ++G+IS Y + G G
Sbjct: 124 NADIF---LDGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGTG 180
Query: 245 AMVLGGISPP---KDMVFTHSDPVRSPYYNIDLKV--IHVAGKPLPLNPKVFDGKHGTVL 299
+V GG++ D+ +T YY D V I V G F +
Sbjct: 181 EVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSA----AVRFSRPQAFTI 236
Query: 300 DSGTTYAYLPEAAFLAFKDAIMSELQSLKQ 329
D+GT + +P +A A + + +Q
Sbjct: 237 DTGTNFFIMPSSAASKIVKAALPDATETQQ 266
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 76/198 (38%), Gaps = 25/198 (12%)
Query: 62 QRSHLNSHPNARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCG 121
Q+ HL NA + + + N Y IG Q FA I DTGS +VP A C G
Sbjct: 2 QKPHLG---NAGDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIG 58
Query: 122 DHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNES 181
++ + S TY E+ E Y + SG +DI++ N S
Sbjct: 59 CKTKNLYDSNKSKTY-------------EKDGTKVEMNYVS-GTVSGFFSKDIVTIANLS 104
Query: 182 DLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLS------VVDQLVEKGVISDS-FSL 234
V E Q DGI+GLG DLS VV +L + I + F+
Sbjct: 105 FPYKFIEVTDTNGFEPAYTLGQF-DGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTF 163
Query: 235 CYGGMDVGGGAMVLGGIS 252
D G + +GGI
Sbjct: 164 YLPFDDKHKGYLTIGGIE 181
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 36/238 (15%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVP-----C------ATCEHCGDHQDPKFEPDLSS 134
Y + +G+ Q +IVDTGS+ +VP C T + C Q ++P SS
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFC--KQKGTYDPSGSS 71
Query: 135 TYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCEN 194
Q + ++ Y + SSS G L +D + FG S A +
Sbjct: 72 ASQDLN-------------TPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS 118
Query: 195 VETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGISP 253
++ G L + G ++ V L ++GVI+ +++SL D G ++ GG+
Sbjct: 119 IDQGILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDN 176
Query: 254 PKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
K + PV S I L + V+GK +N D +LDSGTT YL +
Sbjct: 177 AKYSGSLIALPVTSDRELRISLGSVEVSGK--TINTDNVD----VLLDSGTTITYLQQ 228
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 44/260 (16%)
Query: 183 LKPQRAVFGCENVETGDLY-SQHADGIIGLGRGDLSV------VDQLVEKGVISDSFSLC 235
+K +R VFG + G + + DGI+G+ +SV D L+++ ++ +
Sbjct: 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSF 62
Query: 236 YGGMDVG---GGAMVLGGI-SPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVF 291
Y D GG ++LGG S ++ + R Y+ + L + VA L L
Sbjct: 63 YLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASG-LTLC---- 117
Query: 292 DGKHG--TVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDV 349
K G ++D+GT+ P + E++ L++ G P G
Sbjct: 118 --KEGCEAIVDTGTSLMVGP-----------VDEVRELQKAIGAVP-----LIQGEYMIP 159
Query: 350 SQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRD------PTTLLG 403
+ T PA+ + G G+ L+PE+Y + S+ CL F G D P +LG
Sbjct: 160 CEKVSTLPAITLKLG-GKGYKLSPEDYTLKVSQAGKTLCLSGFM-GMDIPPPSGPLWILG 217
Query: 404 GIIVRNTLVMYDREHSKIGF 423
+ + ++DR+++++GF
Sbjct: 218 DVFIGRYYTVFDRDNNRVGF 237
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 98/238 (41%), Gaps = 36/238 (15%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVP-----C------ATCEHCGDHQDPKFEPDLSS 134
Y + +G+ Q +IVDTGS+ +VP C T + C Q ++P SS
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFC--KQKGTYDPSGSS 71
Query: 135 TYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCEN 194
Q + + Y + SSS G L +D + FG S A +
Sbjct: 72 ASQDLN-------------TPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS 118
Query: 195 VETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVIS-DSFSLCYGGMDVGGGAMVLGGISP 253
++ G L + G ++ V L ++GVI+ +++SL D G ++ GG+
Sbjct: 119 IDQGILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNSPDSATGQIIFGGVDN 176
Query: 254 PKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPE 310
K + PV S I L + V+GK +N D +LDSGTT YL +
Sbjct: 177 AKYSGSLIALPVTSDRELRISLGSVEVSGK--TINTDNVD----VLLDSGTTITYLQQ 228
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 34/164 (20%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEH----CGDHQDPKFEPDLSSTYQPVKC 141
Y + IGTPPQTF ++ DTGS+ +VP + C C H+ F+ SS+Y+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKHNGT 77
Query: 142 NLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY 201
L +Y+ + SG L +DII+ G + + +FG E E L
Sbjct: 78 EL-------------TLRYST-GTVSGFLSQDIITVGGITVTQ----MFG-EVTEMPALP 118
Query: 202 SQHA--DGIIGLGRGDLS------VVDQLVEKGVI-SDSFSLCY 236
A DG++G+G + + + D ++ +GV+ D FS Y
Sbjct: 119 FMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYY 162
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 126/347 (36%), Gaps = 61/347 (17%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRER 151
+G Q F LI DTGS +VP C G ++ S +Y+ D +
Sbjct: 22 VGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKHLYDSSKSKSYEK---------DGTK 72
Query: 152 AQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDL----YSQHADG 207
+ Y + G +D+++ G S P + + E +T DL + DG
Sbjct: 73 VEITYGS-----GTVRGFFSKDLVTLGYLS--LPYKFI---EVTDTDDLEPLYTAAEFDG 122
Query: 208 IIGLGRGDLS------VVDQLVEKGVISDS-FSLCYGGMDVGGGAMVLGGISPP-KDMVF 259
I+GLG DLS +V +L + I + F+ D G + +GGI +
Sbjct: 123 ILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVHDKHSGYLTIGGIEEKFYEGEL 182
Query: 260 THSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
T+ ++ +DL V K K ++DSGT+ P + F
Sbjct: 183 TYEKLNHDLFWQVDLDVNF---------GKTSMEKANVIVDSGTSTITAPTSFINKF--- 230
Query: 320 IMSELQSLKQIRGPD-PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLF 378
+ L I+ P P Y C + P +E N L PE Y+
Sbjct: 231 ----FKDLNVIKVPFLPFYITTC----------NNKDMPTLEFKSAN-NTYTLEPEYYME 275
Query: 379 RHSKVRGAYC-LGIFQNGRDPTT-LLGGIIVRNTLVMYDREHSKIGF 423
+ C L I D T +LG +R ++D + IGF
Sbjct: 276 PLLDIDDTLCMLYILPVDIDKNTFILGDPFMRKYFTVFDYDKESIGF 322
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVTYVP---CATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
Y + IGTP Q F L+ DTGS+ T+VP C E C + F+P SST++ N
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKETDYN 77
Query: 143 LYCNCDRERAQCVYER 158
L A +Y R
Sbjct: 78 LNITYGTGGANGIYFR 93
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 82 LNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCE----HCGDHQDPKFEPDLSSTY 136
++ Y + IGTPPQ F ++ DTGS+ +VP C+ C H K+ D SSTY
Sbjct: 11 MDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHH--KYNSDKSSTY 67
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 40/254 (15%)
Query: 207 GIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVR 266
G+ GL L++ Q+ +++ F LC + GG + + G P FT S P
Sbjct: 139 GVAGLANSGLALPAQVASAQKVANRFLLC---LPTGGPGVAIFGGGPVPWPQFTQSMPYT 195
Query: 267 -------SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
SP + I + I V +P+ P+ G +L + Y L + DA
Sbjct: 196 PLVTKGGSPAHYISARSIVVGDTRVPV-PEGALATGGVMLSTRLPYVLLRPDVYRPLMDA 254
Query: 320 IMSELQSLKQIRGPDPNYND------ICFSGAPSDVSQLSDTF-----PAVEMAFGNGQK 368
L + P + +C+ D L + P V++ G
Sbjct: 255 FTKALAAQHANGAPVARAVEAVAPFGVCY-----DTKTLGNNLGGYAVPNVQLGLDGGSD 309
Query: 369 LLLAPENYLFRHSKVRGAYCLGIFQ-------NGRDPTTLLGGIIVRNTLVMYDREHSKI 421
+ +N + + G C+ + +GR P +LGG + + ++ +D E ++
Sbjct: 310 WTMTGKNSMVDVKQ--GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRL 367
Query: 422 GFWK----TNCSEL 431
GF + T C L
Sbjct: 368 GFSRLPHFTGCGGL 381
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 42/241 (17%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQ----PVKCNLYCNC 147
+G Q F + T S+ +VP C ++ S TY+ PVK
Sbjct: 145 LGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLT----- 199
Query: 148 DRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQ-HAD 206
++ + SG+ +D+++ G S P + + E V YS+ D
Sbjct: 200 -------------SKAGTISGIFSKDLVTIGKLS--VPYKFIEMTEIVGFEPFYSESDVD 244
Query: 207 GIIGLGRGDLS-------VVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPP-KDMV 258
G+ GLG DLS +V+ + + +S+ + G + +GGI D
Sbjct: 245 GVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGP 304
Query: 259 FTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKD 318
+ + +DL V H V K +LDS T+ +P F F +
Sbjct: 305 LNYEKLNHDLMWQVDLDV-HFGN--------VSSKKANVILDSATSVITVPTEFFNQFVE 355
Query: 319 A 319
+
Sbjct: 356 S 356
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 125/348 (35%), Gaps = 63/348 (18%)
Query: 92 IGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQ----PVKCNLYCNC 147
+G Q F + T S+ +VP C ++ S TY+ PVK
Sbjct: 26 LGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLT----- 80
Query: 148 DRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQ-HAD 206
++ + SG+ +D+++ G S P + + E V YS+ D
Sbjct: 81 -------------SKAGTISGIFSKDLVTIGKLS--VPYKFIEMTEIVGFEPFYSESDVD 125
Query: 207 GIIGLGRGDLS-------VVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPP-KDMV 258
G+ GLG DLS +V+ + + +S+ + G + +GGI D
Sbjct: 126 GVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGP 185
Query: 259 FTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKD 318
+ + +DL V H V K +LDS T+ +P F F
Sbjct: 186 LNYEKLNHDLMWQVDLDV-HFGN--------VSSKKANVILDSATSVITVPTEFFNQF-- 234
Query: 319 AIMSELQSLKQIRGPDPN-YNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYL 377
++S + P + Y C + P +E N + L P+ YL
Sbjct: 235 -----VESASVFKVPFLSLYVTTCGNTK----------LPTLEYRSPN-KVYTLEPKQYL 278
Query: 378 FRHSKVRGAYC-LGIFQNGRDPTT-LLGGIIVRNTLVMYDREHSKIGF 423
+ A C L I + T +LG +R +YD ++ +GF
Sbjct: 279 EPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGF 326
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 94/255 (36%), Gaps = 42/255 (16%)
Query: 207 GIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVR 266
G+ GL L++ Q+ +++ F LC + GG + + G P FT S P
Sbjct: 139 GVAGLANSGLALPAQVASAQKVANRFLLC---LPTGGPGVAIFGGGPVPWPQFTQSMPYT 195
Query: 267 -------SPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDA 319
SP + I + I V +P+ P+ G +L + Y L + DA
Sbjct: 196 PLVTKGGSPAHYISARSIVVGDTRVPV-PEGALATGGVMLSTRLPYVLLRPDVYRPLMDA 254
Query: 320 IMSELQSLKQIRGPDPNYN-------DICFSGAPSDVSQLSDTF-----PAVEMAFGNGQ 367
L + + G +C+ D L + P V++ G
Sbjct: 255 FTKALAA-QHANGAPVARAVVAVAPFGVCY-----DTKTLGNNLGGYAVPNVQLGLDGGS 308
Query: 368 KLLLAPENYLFRHSKVRGAYCLGIFQ-------NGRDPTTLLGGIIVRNTLVMYDREHSK 420
+ +N + + G C+ + +GR P +LGG + + ++ +D E +
Sbjct: 309 DWTMTGKNSMVDVKQ--GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKR 366
Query: 421 IGFWK----TNCSEL 431
+GF + T C L
Sbjct: 367 LGFSRLPHFTGCGGL 381
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 29/187 (15%)
Query: 243 GGAMVLGGISPPK-DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDS 301
GG +VLGG P + F + + +++ + I +K + V L ++D+
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL-----ALVDT 57
Query: 302 GTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEM 361
G +Y ++ + +M L + K++ +Y C G T P +
Sbjct: 58 GASYISGSTSSI----EKLMEALGAKKRLF----DYVVKCNEGP---------TLPDISF 100
Query: 362 AFGNGQKLLLAPENYLFRHSKVRGAYC-LGIFQNG----RDPTTLLGGIIVRNTLVMYDR 416
G G++ L +Y+F+ S C L I PT LG +R +DR
Sbjct: 101 HLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDR 159
Query: 417 EHSKIGF 423
+++IGF
Sbjct: 160 RNNRIGF 166
>pdb|3ZQ4|A Chain A, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|C Chain C, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|D Chain D, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|E Chain E, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
Length = 555
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/303 (17%), Positives = 102/303 (33%), Gaps = 40/303 (13%)
Query: 15 FVYVIQSNPATSTATILHGRTRPAMVLPLYLSQPNXXXXXXXXXXHLQRSHLNSHPNARM 74
+ Y++++ I HG +P L Q N L R+ L H R
Sbjct: 57 YTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQ 116
Query: 75 RLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSS 134
+ + + R + +T I D+ V P H GD F+ D +
Sbjct: 117 TKLNIIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGD-----FKFDFTP 171
Query: 135 TYQPVKCNLYCNCDRERAQCVY----ERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVF 190
+P +E C+ + E + S +GE I + D + A F
Sbjct: 172 VGEPANLTKMAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRKVDGRIIFATF 231
Query: 191 GCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYG-----GMDVGGGA 245
++ + Q++E V + +G +++G
Sbjct: 232 AS----------------------NIHRLQQVIEAAVQNGRKVAVFGRSMESAIEIG--- 266
Query: 246 MVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTV-LDSGTT 304
LG I+ PK+ H++ R P + + G+P+ ++ +G H + ++ G T
Sbjct: 267 QTLGYINCPKNTFIEHNEINRMPANKVTILCTGSQGEPMAALSRIANGTHRQISINPGDT 326
Query: 305 YAY 307
+
Sbjct: 327 VVF 329
>pdb|1OZY|A Chain A, Crystal Structure Of Phospholipase A2 (mipla3) From
Micropechis Ikaheka
pdb|1OZY|B Chain B, Crystal Structure Of Phospholipase A2 (mipla3) From
Micropechis Ikaheka
Length = 121
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 132 LSSTYQPVKCNLY-CNCDRERAQCVYERKYAE 162
L+ Q KC L+ CNCDR A C + Y E
Sbjct: 82 LTCNDQKDKCKLFICNCDRTAAMCFAKAPYKE 113
>pdb|1PWO|A Chain A, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
pdb|1PWO|B Chain B, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
pdb|1PWO|C Chain C, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
pdb|1PWO|D Chain D, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
Length = 124
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 132 LSSTYQPVKCNLY-CNCDRERAQCVYERKYAEMSS 165
L+ Q KC L+ CNCDR A C + Y E ++
Sbjct: 82 LTCNDQKDKCKLFICNCDRTAAMCFAKAPYIEANN 116
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 348 DVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTL-----L 402
D + LS + P V G G+K L PE Y+ + K C+ F D T L L
Sbjct: 6 DCNTLS-SMPNVSFTIG-GKKFGLTPEQYILKVGKGEATQCISGF-TAMDATLLGPLWIL 62
Query: 403 GGIIVRNTLVMYDREHSKIGF 423
G + +R ++D + +GF
Sbjct: 63 GDVFMRPYHTVFDYGNLLVGF 83
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 86 YTTRLWIGTPPQTFALIVDTGSTVT-------YVPCATCEHCGDH 123
Y + +G+P T++L+VDTGS+ T YV +T D
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,344,084
Number of Sequences: 62578
Number of extensions: 860903
Number of successful extensions: 1836
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 136
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)