Query 047819
Match_columns 114
No_of_seqs 112 out of 1073
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 2.3E-29 5.1E-34 166.8 13.8 104 3-113 32-136 (142)
2 COG0071 IbpA Molecular chapero 100.0 4.4E-29 9.6E-34 166.6 14.3 108 2-112 39-146 (146)
3 PRK10743 heat shock protein Ib 100.0 5.2E-29 1.1E-33 164.5 13.4 102 4-112 35-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 8.2E-29 1.8E-33 153.6 11.9 92 5-96 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 100.0 5.7E-27 1.2E-31 147.3 13.8 102 7-112 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 5.9E-27 1.3E-31 145.4 11.7 91 4-96 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 3.2E-26 7E-31 141.5 12.5 89 4-96 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.1E-24 2.4E-29 133.6 11.1 82 7-96 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 6E-24 1.3E-28 129.6 11.0 82 7-96 1-83 (83)
10 cd06479 ACD_HspB7_like Alpha c 99.9 5.6E-24 1.2E-28 129.0 10.1 79 7-96 2-81 (81)
11 cd06498 ACD_alphaB-crystallin_ 99.9 8.9E-24 1.9E-28 129.1 10.8 82 8-97 2-84 (84)
12 cd06475 ACD_HspB1_like Alpha c 99.9 4.2E-23 9.1E-28 126.6 10.9 82 6-95 3-85 (86)
13 cd06481 ACD_HspB9_like Alpha c 99.9 3.5E-23 7.7E-28 127.2 10.5 83 10-96 4-87 (87)
14 cd06476 ACD_HspB2_like Alpha c 99.9 6.8E-23 1.5E-27 124.9 10.8 81 8-96 2-83 (83)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 1.2E-22 2.5E-27 123.7 11.6 88 7-96 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 2.8E-22 6.1E-27 123.0 10.5 80 11-95 6-86 (87)
17 cd06526 metazoan_ACD Alpha-cry 99.9 3.7E-22 8E-27 121.6 9.4 78 11-96 5-83 (83)
18 cd06477 ACD_HspB3_Like Alpha c 99.9 1.2E-21 2.6E-26 119.3 10.9 79 9-95 3-82 (83)
19 KOG0710 Molecular chaperone (s 99.8 2.1E-20 4.6E-25 130.1 6.9 110 2-113 83-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 8.6E-19 1.9E-23 108.3 9.6 82 7-96 9-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 3.5E-16 7.7E-21 106.9 12.0 100 4-113 63-163 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.7 1.4E-15 3.1E-20 89.5 10.1 80 8-96 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.5 1.1E-12 2.4E-17 78.4 9.0 71 8-99 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 2.8E-10 6.1E-15 77.5 10.3 79 3-101 91-172 (177)
25 cd06463 p23_like Proteins cont 99.2 3.8E-10 8.3E-15 67.3 9.4 76 8-99 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 9.4E-09 2E-13 61.9 8.0 77 7-99 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.8 5.9E-07 1.3E-11 52.9 11.4 77 4-96 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.5 4.8E-06 1E-10 52.7 10.5 78 4-98 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.4 2.3E-06 5E-11 63.3 9.0 65 12-95 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.3 9.4E-06 2E-10 49.0 8.6 77 7-99 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 98.2 4E-05 8.6E-10 46.1 8.9 75 6-99 1-77 (85)
32 cd06468 p23_CacyBP p23_like do 98.1 0.00012 2.5E-09 44.8 10.4 79 5-99 3-85 (92)
33 cd06488 p23_melusin_like p23_l 98.1 0.00012 2.6E-09 44.5 10.0 79 5-99 2-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 98.0 0.00018 3.9E-09 43.5 9.5 76 6-100 1-78 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.8 0.0007 1.5E-08 41.9 9.7 76 4-99 6-83 (93)
36 cd00237 p23 p23 binds heat sho 97.7 0.002 4.2E-08 40.8 10.6 79 3-99 1-79 (106)
37 PLN03088 SGT1, suppressor of 97.3 0.0031 6.8E-08 47.6 9.0 80 4-99 157-236 (356)
38 KOG1309 Suppressor of G2 allel 97.0 0.0054 1.2E-07 42.3 7.0 79 3-97 3-81 (196)
39 cd06492 p23_mNUDC_like p23-lik 96.7 0.047 1E-06 33.2 9.3 74 7-99 2-79 (87)
40 cd06495 p23_NUDCD3_like p23-li 96.5 0.069 1.5E-06 33.6 9.2 80 3-98 4-86 (102)
41 cd06490 p23_NCB5OR p23_like do 96.0 0.16 3.4E-06 30.8 10.2 76 6-99 1-80 (87)
42 PF14913 DPCD: DPCD protein fa 95.4 0.22 4.7E-06 34.7 8.5 77 3-98 86-170 (194)
43 cd06482 ACD_HspB10 Alpha cryst 88.6 1.6 3.4E-05 26.6 4.7 34 65-99 9-42 (87)
44 KOG2265 Nuclear distribution p 88.5 4.7 0.0001 27.8 7.4 76 4-98 19-96 (179)
45 PF13349 DUF4097: Domain of un 87.8 5.9 0.00013 26.0 8.7 81 5-93 67-147 (166)
46 KOG3158 HSP90 co-chaperone p23 87.4 5 0.00011 27.7 7.0 82 1-100 5-86 (180)
47 cd06477 ACD_HspB3_Like Alpha c 86.8 1.5 3.3E-05 26.3 3.9 34 65-99 8-41 (83)
48 cd06476 ACD_HspB2_like Alpha c 86.3 1.6 3.5E-05 26.2 3.8 33 64-97 7-39 (83)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 85.5 2.3 5E-05 25.4 4.3 33 64-97 7-39 (83)
50 cd06497 ACD_alphaA-crystallin_ 85.3 2.1 4.5E-05 25.8 4.0 33 64-97 10-42 (86)
51 cd06470 ACD_IbpA-B_like Alpha- 85.1 3.1 6.8E-05 25.0 4.8 36 64-100 11-46 (90)
52 cd06479 ACD_HspB7_like Alpha c 84.7 3.7 7.9E-05 24.5 4.8 33 65-98 9-41 (81)
53 PF00011 HSP20: Hsp20/alpha cr 83.6 3.2 6.8E-05 25.2 4.4 37 13-50 55-92 (102)
54 cd06464 ACD_sHsps-like Alpha-c 83.3 3.4 7.3E-05 24.0 4.3 33 11-44 54-87 (88)
55 cd06526 metazoan_ACD Alpha-cry 82.8 3.9 8.4E-05 24.1 4.4 34 65-99 8-41 (83)
56 PF08308 PEGA: PEGA domain; I 82.7 6.7 0.00015 22.2 5.4 41 6-46 27-68 (71)
57 cd06471 ACD_LpsHSP_like Group 82.4 2.7 5.8E-05 25.3 3.7 30 13-43 62-91 (93)
58 cd06498 ACD_alphaB-crystallin_ 81.9 3.5 7.5E-05 24.7 4.0 33 64-97 7-39 (84)
59 KOG1667 Zn2+-binding protein M 81.5 13 0.00029 27.4 7.4 85 1-100 212-296 (320)
60 cd06481 ACD_HspB9_like Alpha c 81.0 6.1 0.00013 23.8 4.9 34 65-99 8-41 (87)
61 cd06480 ACD_HspB8_like Alpha-c 80.6 5.1 0.00011 24.5 4.4 29 14-43 59-89 (91)
62 cd06475 ACD_HspB1_like Alpha c 80.2 4.5 9.9E-05 24.3 4.1 34 64-98 10-43 (86)
63 cd06472 ACD_ScHsp26_like Alpha 79.5 4.9 0.00011 24.1 4.1 31 12-43 59-90 (92)
64 PF12992 DUF3876: Domain of un 79.1 10 0.00022 23.5 5.4 39 3-42 25-68 (95)
65 PRK10743 heat shock protein Ib 78.3 7.3 0.00016 25.6 4.9 35 64-99 45-79 (137)
66 PF04972 BON: BON domain; Int 74.8 8.8 0.00019 21.1 4.1 26 22-48 12-37 (64)
67 COG5091 SGT1 Suppressor of G2 71.0 2.8 6E-05 31.3 1.6 79 5-98 178-256 (368)
68 KOG3260 Calcyclin-binding prot 71.0 26 0.00056 24.6 6.2 77 6-98 77-154 (224)
69 COG0071 IbpA Molecular chapero 70.4 19 0.0004 23.6 5.4 36 13-49 100-136 (146)
70 PRK11597 heat shock chaperone 70.0 14 0.0003 24.5 4.7 33 65-98 44-76 (142)
71 PF14814 UB2H: Bifunctional tr 69.6 20 0.00043 21.4 5.0 40 52-91 29-69 (85)
72 cd06469 p23_DYX1C1_like p23_li 68.3 20 0.00043 20.4 4.9 33 13-46 36-69 (78)
73 PRK05518 rpl6p 50S ribosomal p 67.3 38 0.00083 23.4 6.7 45 26-95 13-57 (180)
74 KOG3591 Alpha crystallins [Pos 66.7 11 0.00023 25.9 3.8 35 15-49 117-152 (173)
75 KOG3247 Uncharacterized conser 66.4 3.2 6.9E-05 32.4 1.2 81 1-102 1-84 (466)
76 PF01954 DUF104: Protein of un 65.7 6.8 0.00015 22.1 2.2 15 79-93 3-17 (60)
77 cd06467 p23_NUDC_like p23_like 64.6 25 0.00055 20.3 5.6 31 65-95 9-39 (85)
78 PRK10568 periplasmic protein; 64.3 20 0.00044 25.0 4.9 25 22-47 73-97 (203)
79 TIGR03654 L6_bact ribosomal pr 62.7 47 0.001 22.7 6.7 44 26-95 11-54 (175)
80 cd06494 p23_NUDCD2_like p23-li 62.5 33 0.00072 20.9 5.9 35 60-94 11-45 (93)
81 PTZ00027 60S ribosomal protein 61.7 45 0.00098 23.2 6.1 48 25-95 12-59 (190)
82 PRK05498 rplF 50S ribosomal pr 61.0 51 0.0011 22.6 6.4 44 26-95 12-55 (178)
83 TIGR03653 arch_L6P archaeal ri 60.9 50 0.0011 22.5 6.9 45 26-95 7-51 (170)
84 cd02175 GH16_lichenase lichena 57.8 46 0.00099 23.1 5.7 48 25-75 30-80 (212)
85 PF09985 DUF2223: Domain of un 50.3 92 0.002 22.3 6.3 95 5-99 35-144 (228)
86 TIGR00251 conserved hypothetic 49.9 41 0.0009 20.4 3.9 38 8-47 1-41 (87)
87 CHL00140 rpl6 ribosomal protei 48.4 85 0.0018 21.5 5.7 44 26-95 12-55 (178)
88 PRK11198 LysM domain/BON super 47.9 34 0.00073 22.6 3.6 26 22-48 38-63 (147)
89 cd00503 Frataxin Frataxin is a 46.5 25 0.00053 22.1 2.6 17 79-95 28-44 (105)
90 COG4004 Uncharacterized protei 46.0 68 0.0015 19.8 4.3 34 6-44 26-59 (96)
91 cd02178 GH16_beta_agarase Beta 45.7 1.1E+02 0.0024 21.9 6.7 44 31-75 60-110 (258)
92 cd00413 Glyco_hydrolase_16 gly 44.5 97 0.0021 21.0 5.6 48 25-75 28-79 (210)
93 PF01491 Frataxin_Cyay: Fratax 43.9 32 0.00069 21.6 2.9 18 79-96 30-47 (109)
94 PF03983 SHD1: SLA1 homology d 43.4 33 0.00071 20.0 2.6 30 7-36 14-43 (70)
95 PRK00446 cyaY frataxin-like pr 43.0 26 0.00057 22.0 2.4 17 81-97 29-45 (105)
96 TIGR03421 FeS_CyaY iron donor 42.9 25 0.00055 21.9 2.3 17 80-96 26-42 (102)
97 PTZ00179 60S ribosomal protein 42.8 1.1E+02 0.0025 21.2 6.0 47 26-95 12-58 (189)
98 PRK13726 conjugal transfer pil 42.2 70 0.0015 22.2 4.6 49 26-93 130-178 (188)
99 PF12080 GldM_C: GldM C-termin 41.1 56 0.0012 22.5 3.9 42 2-44 3-44 (181)
100 KOG3413 Mitochondrial matrix p 40.8 14 0.00031 24.8 0.9 21 75-95 68-88 (156)
101 PF03681 UPF0150: Uncharacteri 40.7 38 0.00083 17.6 2.5 18 7-24 5-24 (48)
102 PRK05090 hypothetical protein; 40.0 87 0.0019 19.3 4.3 38 8-47 4-42 (95)
103 PF07873 YabP: YabP family; I 37.4 34 0.00074 19.3 2.1 22 24-46 23-44 (66)
104 cd02179 GH16_beta_GRP beta-1,3 34.8 2E+02 0.0043 21.7 8.2 33 14-47 16-56 (321)
105 PF13620 CarboxypepD_reg: Carb 34.7 82 0.0018 17.7 3.5 28 13-40 48-76 (82)
106 cd08023 GH16_laminarinase_like 34.3 1.6E+02 0.0035 20.5 7.0 50 23-75 34-91 (235)
107 cd02182 GH16_Strep_laminarinas 33.7 1.2E+02 0.0026 21.7 4.9 43 31-74 48-98 (259)
108 PF05309 TraE: TraE protein; 33.6 1.1E+02 0.0023 20.9 4.5 22 25-47 129-150 (187)
109 cd08024 GH16_CCF Coelomic cyto 33.5 2.1E+02 0.0045 21.6 7.7 34 13-47 13-54 (330)
110 TIGR03422 mito_frataxin fratax 33.2 31 0.00067 21.3 1.5 16 82-97 30-45 (97)
111 PF05455 GvpH: GvpH; InterPro 32.2 1.7E+02 0.0038 20.2 6.3 39 11-50 134-172 (177)
112 cd02180 GH16_fungal_KRE6_gluca 30.8 1.8E+02 0.0038 21.7 5.4 46 26-74 40-90 (295)
113 PF15631 Imm-NTF2-2: NTF2 fold 30.1 1.2E+02 0.0025 17.5 5.5 40 3-42 21-63 (66)
114 cd06495 p23_NUDCD3_like p23-li 29.9 1.4E+02 0.0031 18.5 5.9 38 58-95 8-46 (102)
115 TIGR02856 spore_yqfC sporulati 29.4 50 0.0011 19.9 1.9 22 23-45 40-61 (85)
116 smart00237 Calx_beta Domains i 29.2 1.3E+02 0.0028 17.8 4.7 34 1-34 6-39 (90)
117 KOG4379 Uncharacterized conser 28.5 1.7E+02 0.0037 23.6 5.1 41 3-43 289-330 (596)
118 COG4070 Predicted peptidyl-pro 28.1 1.7E+02 0.0037 23.2 5.0 22 14-35 116-137 (512)
119 PF06045 Rhamnogal_lyase: Rham 27.2 77 0.0017 22.4 2.8 21 78-98 13-33 (203)
120 PF12624 Chorein_N: N-terminal 27.1 1.3E+02 0.0028 18.8 3.7 20 22-42 18-37 (118)
121 TIGR02892 spore_yabP sporulati 26.9 60 0.0013 19.6 2.0 22 23-45 21-42 (85)
122 PF11741 AMIN: AMIN domain; I 26.3 1.4E+02 0.003 17.3 9.0 18 6-23 1-18 (95)
123 TIGR02934 nifT_nitrog probable 26.2 76 0.0016 18.4 2.2 17 86-102 9-25 (67)
124 smart00675 DM11 Domains in hyp 25.8 2.2E+02 0.0048 19.3 5.6 25 22-47 28-52 (164)
125 PF05258 DUF721: Protein of un 25.4 74 0.0016 18.2 2.2 23 73-95 34-56 (89)
126 PF03368 Dicer_dimer: Dicer di 24.9 1.2E+02 0.0025 18.2 3.1 23 2-24 20-42 (90)
127 PF07122 VLPT: Variable length 24.3 24 0.00053 17.0 -0.1 18 15-32 12-29 (30)
128 PRK00647 hypothetical protein; 23.7 1.6E+02 0.0035 18.2 3.5 34 12-47 3-37 (96)
129 TIGR02761 TraE_TIGR type IV co 23.6 2.5E+02 0.0053 19.1 5.1 22 25-47 129-150 (181)
130 cd06407 PB1_NLP A PB1 domain i 23.5 79 0.0017 18.8 2.1 18 80-97 2-19 (82)
131 KOG4356 Uncharacterized conser 23.1 14 0.00031 27.8 -1.5 69 10-97 237-308 (310)
132 COG1965 CyaY Protein implicate 22.9 72 0.0016 20.2 1.9 17 81-97 30-46 (106)
133 PF13014 KH_3: KH domain 22.8 1.2E+02 0.0025 15.2 2.7 21 91-113 23-43 (43)
134 PLN02711 Probable galactinol-- 22.3 2.9E+02 0.0064 23.7 5.7 42 58-99 723-767 (777)
135 PF02107 FlgH: Flagellar L-rin 22.2 1.5E+02 0.0034 20.2 3.6 32 81-114 100-131 (179)
136 cd02177 GH16_kappa_carrageenas 22.2 3.2E+02 0.007 20.0 7.0 44 30-74 45-103 (269)
137 PF14651 Lipocalin_7: Lipocali 21.9 1.5E+02 0.0032 19.3 3.2 22 3-24 36-57 (128)
138 COG0097 RplF Ribosomal protein 21.8 2.8E+02 0.0061 19.2 6.4 48 22-94 8-55 (178)
139 PRK14646 hypothetical protein; 21.5 77 0.0017 21.2 1.9 16 12-27 73-88 (155)
140 cd03863 M14_CPD_II The second 21.2 1.6E+02 0.0035 22.7 3.8 29 12-40 340-368 (375)
141 PF03041 Baculo_LEF-2: lef-2; 21.1 83 0.0018 21.5 2.0 45 1-45 3-50 (163)
142 PF13600 DUF4140: N-terminal d 20.5 1.4E+02 0.0031 18.0 2.9 26 71-96 30-57 (104)
143 COG2880 Uncharacterized protei 20.4 8.4 0.00018 22.3 -2.5 13 80-92 6-18 (67)
144 PRK14630 hypothetical protein; 20.1 93 0.002 20.5 2.1 16 12-27 70-85 (143)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=2.3e-29 Score=166.79 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=91.4
Q ss_pred cceeeEEe-CCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCce
Q 047819 3 PTRIDWDD-TPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRI 81 (114)
Q Consensus 3 ~p~~dv~e-~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 81 (114)
.|++||+| ++++|+|+++|||++++||+|.+++| .|+|+|++.. ..++..|+++|+++|.|+|+|.||+++|.+
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~--~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQ--PEKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEcc--ccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 58999998 57799999999999999999999986 9999999764 235678999999999999999999999998
Q ss_pred eEEEeCCEEEEEEeeeCCCCCCCCceEEEEee
Q 047819 82 TAHIANSTLTVTIRKKDIKKHHGHSRSIKIIG 113 (114)
Q Consensus 82 ~a~~~~GvL~I~ipK~~~~~~~~~~~~I~I~~ 113 (114)
+|+|+||+|+|+|||..+... .+++|+|+.
T Consensus 107 ~A~~~nGVL~I~lPK~~~~~~--~~rkI~I~~ 136 (142)
T PRK11597 107 GATFVNGLLHIDLIRNEPEAI--APQRIAISE 136 (142)
T ss_pred cCEEcCCEEEEEEeccCcccc--CCcEEEECC
Confidence 799999999999999854433 459999863
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-29 Score=166.57 Aligned_cols=108 Identities=30% Similarity=0.419 Sum_probs=100.2
Q ss_pred CcceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCce
Q 047819 2 IPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRI 81 (114)
Q Consensus 2 ~~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 81 (114)
..|++||++++++|.|.++|||++++||+|+++++ .|+|+|++..+...+...++++++.+|.|+|+|.||..++++.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 47999999999999999999999999999999987 99999999987777788999999999999999999999999999
Q ss_pred eEEEeCCEEEEEEeeeCCCCCCCCceEEEEe
Q 047819 82 TAHIANSTLTVTIRKKDIKKHHGHSRSIKII 112 (114)
Q Consensus 82 ~a~~~~GvL~I~ipK~~~~~~~~~~~~I~I~ 112 (114)
+|+|+||+|+|+|||..++.. ..++|+|+
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~--~~~~i~I~ 146 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEK--KPKRIEIE 146 (146)
T ss_pred eeEeeCcEEEEEEeccccccc--cCceeecC
Confidence 999999999999999998754 45788774
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=5.2e-29 Score=164.51 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=90.4
Q ss_pred ceeeEEe-CCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCcee
Q 047819 4 TRIDWDD-TPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRIT 82 (114)
Q Consensus 4 p~~dv~e-~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 82 (114)
|++||.+ ++++|.|+++|||++++||+|++++| .|+|+|++... .+...|+++|+++|+|.|+|.||+++|.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADE--QKERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECcc--ccCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8999994 89999999999999999999999987 99999997654 34567999999999999999999999999 4
Q ss_pred EEEeCCEEEEEEeeeCCCCCCCCceEEEEe
Q 047819 83 AHIANSTLTVTIRKKDIKKHHGHSRSIKII 112 (114)
Q Consensus 83 a~~~~GvL~I~ipK~~~~~~~~~~~~I~I~ 112 (114)
|+|+||+|+|++||..+... .+|+|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~--~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAK--KPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCcccc--CCeEEeeC
Confidence 99999999999999754443 55899885
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.96 E-value=8.2e-29 Score=153.61 Aligned_cols=92 Identities=57% Similarity=0.885 Sum_probs=86.1
Q ss_pred eeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEE
Q 047819 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAH 84 (114)
Q Consensus 5 ~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~ 84 (114)
++||+|++++|.|.++|||+++++|+|.+.+++.|+|+|++..+....++.++.+|+.+|.|.|+|.||.+++.+.++|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999865589999999876666688899999999999999999999999999999
Q ss_pred EeCCEEEEEEee
Q 047819 85 IANSTLTVTIRK 96 (114)
Q Consensus 85 ~~~GvL~I~ipK 96 (114)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.95 E-value=5.7e-27 Score=147.34 Aligned_cols=102 Identities=35% Similarity=0.529 Sum_probs=84.6
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA 86 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~ 86 (114)
||.+++++|.|.++|||+++++|+|.+.++ .|.|+|++. ....+..++..+++++.|.|+|.||.++|.++++|.|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 799999999999999999999999999987 999999998 44456777888999999999999999999999999999
Q ss_pred CCEEEEEEeeeCCCCCCCCceEEEEe
Q 047819 87 NSTLTVTIRKKDIKKHHGHSRSIKII 112 (114)
Q Consensus 87 ~GvL~I~ipK~~~~~~~~~~~~I~I~ 112 (114)
||+|+|++||...... ...++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~-~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEED-SQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTT-SSSCEE-ET
T ss_pred CCEEEEEEEccccccC-CCCeEEEeC
Confidence 9999999999998643 256899885
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.95 E-value=5.9e-27 Score=145.37 Aligned_cols=91 Identities=33% Similarity=0.492 Sum_probs=83.1
Q ss_pred ceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccc--cCcccEEEeeeeeeEEEEEEECCCCcccCce
Q 047819 4 TRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKE--ERTDEGHCLEVVVGKFSRRFQLLENAMVDRI 81 (114)
Q Consensus 4 p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 81 (114)
|++||.|++++|+|.++|||+++++|+|++.++ .|.|+|++..... ..++.++++|+.+|+|.|+|.|| +++.+.+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 579999999999999999999999999999986 9999999986433 23457999999999999999999 7999999
Q ss_pred eEEEeCCEEEEEEee
Q 047819 82 TAHIANSTLTVTIRK 96 (114)
Q Consensus 82 ~a~~~~GvL~I~ipK 96 (114)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.94 E-value=3.2e-26 Score=141.52 Aligned_cols=89 Identities=22% Similarity=0.383 Sum_probs=82.1
Q ss_pred ceeeEEeCC-CeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCcee
Q 047819 4 TRIDWDDTP-EFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRIT 82 (114)
Q Consensus 4 p~~dv~e~~-~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 82 (114)
|++||++++ ++|.+.++|||+++++|+|.+.++ .|+|+|++..... .+..|+++|+.+|.|.|+|.||.+++.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 789999975 999999999999999999999986 9999999987755 6778999999999999999999999875 8
Q ss_pred EEEeCCEEEEEEee
Q 047819 83 AHIANSTLTVTIRK 96 (114)
Q Consensus 83 a~~~~GvL~I~ipK 96 (114)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.92 E-value=1.1e-24 Score=133.60 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=72.3
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEE-
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHI- 85 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~- 85 (114)
+|.+++++|.|.++|||+++++|+|++.++ .|+|+|++.... ....|.++ .|.|+|.||+++|.++++|.|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQ--DDHGYISR-----EFHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHeEEEeC
Confidence 789999999999999999999999999987 999999875432 23345443 499999999999999999999
Q ss_pred eCCEEEEEEee
Q 047819 86 ANSTLTVTIRK 96 (114)
Q Consensus 86 ~~GvL~I~ipK 96 (114)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.92 E-value=6e-24 Score=129.59 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=71.1
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEE-
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHI- 85 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~- 85 (114)
++.+++++|.|.++||||++++|+|++.++ .|.|+|++.... ....++++ .|.|+|.||.++|.++++|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQ--DEHGFISR-----EFHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEc--CCCCEEEE-----EEEEEEECCCCcChHHeEEEEC
Confidence 478999999999999999999999999986 999999875432 23334443 499999999999999999999
Q ss_pred eCCEEEEEEee
Q 047819 86 ANSTLTVTIRK 96 (114)
Q Consensus 86 ~~GvL~I~ipK 96 (114)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 79999999997
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.91 E-value=5.6e-24 Score=129.05 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=71.6
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEE-
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHI- 85 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~- 85 (114)
||.|++++|.+.++|||++++||+|++.++ .|.|+|+++... + ..+|+|+|+|.||.++|+++++|.|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~----~------~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASD----G------TVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccC----C------CEEEEEEEEEECCCCcCHHHeEEEec
Confidence 689999999999999999999999999986 999999986432 1 2378999999999999999999997
Q ss_pred eCCEEEEEEee
Q 047819 86 ANSTLTVTIRK 96 (114)
Q Consensus 86 ~~GvL~I~ipK 96 (114)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.91 E-value=8.9e-24 Score=129.09 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=71.1
Q ss_pred EEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe-
Q 047819 8 WDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA- 86 (114)
Q Consensus 8 v~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~- 86 (114)
+++++++|.|.++||||++++|+|++.++ .|+|+|++.... ....+++ +.|.|+|.||.++|.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~-----~eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQ--DEHGFIS-----REFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccee--CCCCEEE-----EEEEEEEECCCCCChHHcEEEeCC
Confidence 67889999999999999999999999986 999999875433 2333443 35999999999999999999995
Q ss_pred CCEEEEEEeee
Q 047819 87 NSTLTVTIRKK 97 (114)
Q Consensus 87 ~GvL~I~ipK~ 97 (114)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.90 E-value=4.2e-23 Score=126.61 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=71.7
Q ss_pred eeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEE
Q 047819 6 IDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHI 85 (114)
Q Consensus 6 ~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~ 85 (114)
.+|+|++++|.|.++|||+++++|+|.+.++ .|+|+|++..... ...+ ..+.|+|+|.||.++|.++++|.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~-----~~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQD--EHGF-----VSRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcC--CCCE-----EEEEEEEEEECCCCCCHHHcEEEE
Confidence 5899999999999999999999999999986 9999999864322 2222 245899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 047819 86 A-NSTLTVTIR 95 (114)
Q Consensus 86 ~-~GvL~I~ip 95 (114)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 7 999999998
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.90 E-value=3.5e-23 Score=127.20 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=72.2
Q ss_pred eCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEE-eCC
Q 047819 10 DTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHI-ANS 88 (114)
Q Consensus 10 e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~-~~G 88 (114)
+..++|.|.++||||+++||+|.+.++ .|+|+|++..........|. +.+|.|.|+|.||+++|.++++|.| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 456799999999999999999999986 99999998765544444443 3479999999999999999999999 999
Q ss_pred EEEEEEee
Q 047819 89 TLTVTIRK 96 (114)
Q Consensus 89 vL~I~ipK 96 (114)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.90 E-value=6.8e-23 Score=124.88 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=69.3
Q ss_pred EEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe-
Q 047819 8 WDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA- 86 (114)
Q Consensus 8 v~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~- 86 (114)
+..++++|.|.++|||+++++|+|++.++ .|+|+|++.... ....+. .+.|+|+|.||.++|.++|+|.|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~-----~~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRM--DRHGFV-----SREFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccee--cCCCEE-----EEEEEEEEECCCCCChhhEEEEecC
Confidence 45688999999999999999999999987 999999985432 222233 346999999999999999999995
Q ss_pred CCEEEEEEee
Q 047819 87 NSTLTVTIRK 96 (114)
Q Consensus 87 ~GvL~I~ipK 96 (114)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.90 E-value=1.2e-22 Score=123.73 Aligned_cols=88 Identities=47% Similarity=0.639 Sum_probs=80.9
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA 86 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~ 86 (114)
++.+++++|.+.++|||+++++|+|.+.++ .|.|+|++........ .+...++..+.|.|+|.||.+++.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 578999999999999999999999999986 9999999987655444 77888999999999999999999999999999
Q ss_pred CCEEEEEEee
Q 047819 87 NSTLTVTIRK 96 (114)
Q Consensus 87 ~GvL~I~ipK 96 (114)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.89 E-value=2.8e-22 Score=123.02 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCC-E
Q 047819 11 TPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANS-T 89 (114)
Q Consensus 11 ~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~G-v 89 (114)
+++.|+|.++|||+++++|+|.+.+| .|+|+|++....+... ..++.+|.|.|+|.||.++|.++++|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 57899999999999999999999987 9999999976543222 2367899999999999999999999999777 9
Q ss_pred EEEEEe
Q 047819 90 LTVTIR 95 (114)
Q Consensus 90 L~I~ip 95 (114)
|+|.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999876
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.88 E-value=3.7e-22 Score=121.56 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=68.1
Q ss_pred CCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeC-CE
Q 047819 11 TPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIAN-ST 89 (114)
Q Consensus 11 ~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~-Gv 89 (114)
++++|.+.++||||++++|+|.+.++ .|.|+|++..... .. ++.++.|.|+|.||.++|.++++|.|.| |+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~Gv 76 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGV 76 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcE
Confidence 34699999999999999999999986 9999999876432 11 2346899999999999999999999998 99
Q ss_pred EEEEEee
Q 047819 90 LTVTIRK 96 (114)
Q Consensus 90 L~I~ipK 96 (114)
|+|++||
T Consensus 77 L~I~~Pk 83 (83)
T cd06526 77 LTIEAPK 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.88 E-value=1.2e-21 Score=119.29 Aligned_cols=79 Identities=18% Similarity=0.343 Sum_probs=68.1
Q ss_pred EeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEE-eC
Q 047819 9 DDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHI-AN 87 (114)
Q Consensus 9 ~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~-~~ 87 (114)
.+++++|.|+++|||+++++|+|++.++ .|+|+|++..... ...+. .+.|.|+|.||.+++.++++|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 4678999999999999999999999987 9999999876432 22232 34899999999999999999998 89
Q ss_pred CEEEEEEe
Q 047819 88 STLTVTIR 95 (114)
Q Consensus 88 GvL~I~ip 95 (114)
|+|+|..|
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999865
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.1e-20 Score=130.09 Aligned_cols=110 Identities=45% Similarity=0.649 Sum_probs=98.8
Q ss_pred CcceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccc--CcccEEEeeeeeeEEEEEEECCCCcccC
Q 047819 2 IPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEE--RTDEGHCLEVVVGKFSRRFQLLENAMVD 79 (114)
Q Consensus 2 ~~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~~~f~r~~~lP~~vd~~ 79 (114)
+.++.++.+..+.|.+.++|||+++++++++++++++|.|+|++..+... ....++..++..|.|.|.|.||+.++.+
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVD 162 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHH
Confidence 56778899999999999999999999999999987689999999987654 5677888899999999999999999999
Q ss_pred ceeEEEeCCEEEEEEeeeCC--CCCCCCceEEEEee
Q 047819 80 RITAHIANSTLTVTIRKKDI--KKHHGHSRSIKIIG 113 (114)
Q Consensus 80 ~i~a~~~~GvL~I~ipK~~~--~~~~~~~~~I~I~~ 113 (114)
.|+|.|+||+|.|++||..+ ..+ ..+.|.|++
T Consensus 163 ~ikA~~~nGVL~VvvpK~~~~~~~~--~v~~i~i~~ 196 (196)
T KOG0710|consen 163 EIKAEMENGVLTVVVPKLEPLLKKP--KVRQIAISG 196 (196)
T ss_pred HHHHHhhCCeEEEEEecccccccCC--ccceeeccC
Confidence 99999999999999999998 455 677787764
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.80 E-value=8.6e-19 Score=108.27 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=70.7
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA 86 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~ 86 (114)
-+.+.+++|.|.+++.||+++||+|++.++ .|+|+|++.....+ .+ +. .+.|.|+|.||+++|.+.|+|.|.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e-~g-~~-----~r~F~R~~~LP~~Vd~~~v~s~l~ 80 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKE-GG-IV-----SKNFTKKIQLPPEVDPVTVFASLS 80 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCC-CC-EE-----EEEEEEEEECCCCCCchhEEEEeC
Confidence 356788999999999999999999999986 99999998865432 22 22 478999999999999999999997
Q ss_pred -CCEEEEEEee
Q 047819 87 -NSTLTVTIRK 96 (114)
Q Consensus 87 -~GvL~I~ipK 96 (114)
||+|+|.+|.
T Consensus 81 ~dGvL~IeaP~ 91 (91)
T cd06480 81 PEGLLIIEAPQ 91 (91)
T ss_pred CCCeEEEEcCC
Confidence 9999999883
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.5e-16 Score=106.86 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=85.3
Q ss_pred ceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeE
Q 047819 4 TRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITA 83 (114)
Q Consensus 4 p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a 83 (114)
...++..++++|.+.+|+..|.+++|.|.+.++ .|.|.|++..... +.+ +. ...|.|.|.||+++|+++|++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d-~~G-~v-----~R~F~R~y~LP~~vdp~~V~S 134 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKED-EHG-YV-----SRSFVRKYLLPEDVDPTSVTS 134 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCC-EEEEEeeeccccC-CCC-eE-----EEEEEEEecCCCCCChhheEE
Confidence 356788899999999999999999999999986 9999999876542 222 22 356999999999999999999
Q ss_pred EE-eCCEEEEEEeeeCCCCCCCCceEEEEee
Q 047819 84 HI-ANSTLTVTIRKKDIKKHHGHSRSIKIIG 113 (114)
Q Consensus 84 ~~-~~GvL~I~ipK~~~~~~~~~~~~I~I~~ 113 (114)
.+ .||+|+|..||...... ..|.|+|+.
T Consensus 135 ~LS~dGvLtI~ap~~~~~~~--~er~ipI~~ 163 (173)
T KOG3591|consen 135 TLSSDGVLTIEAPKPPPKQD--NERSIPIEQ 163 (173)
T ss_pred eeCCCceEEEEccCCCCcCc--cceEEeEee
Confidence 99 79999999999998765 558888864
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.67 E-value=1.4e-15 Score=89.51 Aligned_cols=80 Identities=40% Similarity=0.628 Sum_probs=70.8
Q ss_pred EEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeC
Q 047819 8 WDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIAN 87 (114)
Q Consensus 8 v~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~ 87 (114)
|.++++.|.|++++||+.+++++|.+.++ .|.|+|....... .+...+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 46888999999999999999999999986 9999998765432 33446789999999999999999999999
Q ss_pred CEEEEEEee
Q 047819 88 STLTVTIRK 96 (114)
Q Consensus 88 GvL~I~ipK 96 (114)
|.|.|.+||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.45 E-value=1.1e-12 Score=78.38 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=64.3
Q ss_pred EEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeC
Q 047819 8 WDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIAN 87 (114)
Q Consensus 8 v~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~ 87 (114)
+.++++.+.|.+.+||+++++++|.++++ .|.|++ ..|.+.+.||..++++..++++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~--------------------~~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNF--------------------PPYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcC--------------------CCEEEEEeCcccccccccEEEEeC
Confidence 46889999999999999999999999986 899886 137888999999999999999999
Q ss_pred CEEEEEEeeeCC
Q 047819 88 STLTVTIRKKDI 99 (114)
Q Consensus 88 GvL~I~ipK~~~ 99 (114)
|.|.|+|+|..+
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999764
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.20 E-value=2.8e-10 Score=77.54 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=62.8
Q ss_pred cceeeEEeCCC-eEEEEEEcCCCCCCC-EEEEEeCC-cEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccC
Q 047819 3 PTRIDWDDTPE-FHVFKADLSGFHKHD-VKVEIEDG-RVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVD 79 (114)
Q Consensus 3 ~p~~dv~e~~~-~~~i~~~lPG~~~~d-i~v~~~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~ 79 (114)
.+.+++.+.++ .+++.++|||+++++ |+|.+..+ ..|+|+. -+.|.+++.||.. +++
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-------------------~~~~~krv~L~~~-~~e 150 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-------------------GEKYLKRVALPWP-DPE 150 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-------------------CCceEeeEecCCC-ccc
Confidence 46678898788 699999999998888 99999843 2455542 1236778999976 688
Q ss_pred ceeEEEeCCEEEEEEeeeCCCC
Q 047819 80 RITAHIANSTLTVTIRKKDIKK 101 (114)
Q Consensus 80 ~i~a~~~~GvL~I~ipK~~~~~ 101 (114)
.+++.|+||+|.|++-+.....
T Consensus 151 ~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 151 ITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred eeeEEEeCceEEEEEeecCCCC
Confidence 8999999999999998877654
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.19 E-value=3.8e-10 Score=67.34 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=66.7
Q ss_pred EEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeC
Q 047819 8 WDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIAN 87 (114)
Q Consensus 8 v~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~ 87 (114)
+.++++.+.|.+.+||..+++++|.+.++ .|.|++.... .+.|...+.|+..++++...+++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence 46788999999999999999999999986 8999986430 2357888999999999999999999
Q ss_pred CEEEEEEeeeCC
Q 047819 88 STLTVTIRKKDI 99 (114)
Q Consensus 88 GvL~I~ipK~~~ 99 (114)
|.|.|+|+|..+
T Consensus 65 ~~l~i~L~K~~~ 76 (84)
T cd06463 65 RKIEITLKKKEP 76 (84)
T ss_pred CEEEEEEEECCC
Confidence 999999999876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.93 E-value=9.4e-09 Score=61.89 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=66.9
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA 86 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~ 86 (114)
|++++++.+.|.+.+||+.++++.|.+.++ .|.|++... ..+.|...+.|+..++++..++.+.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~---------------~~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP---------------GGSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC---------------CCCeEEEecccccccCchhcEEEEe
Confidence 678999999999999999999999999985 899986531 0235777889999999999999999
Q ss_pred CCEEEEEEeeeCC
Q 047819 87 NSTLTVTIRKKDI 99 (114)
Q Consensus 87 ~GvL~I~ipK~~~ 99 (114)
+|.|.|.|+|..+
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999865
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.75 E-value=5.9e-07 Score=52.91 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=63.6
Q ss_pred ceeeEEeCCCeEEEEEEcCCC--CCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCce
Q 047819 4 TRIDWDDTPEFHVFKADLSGF--HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRI 81 (114)
Q Consensus 4 p~~dv~e~~~~~~i~~~lPG~--~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 81 (114)
|+++|.++++...|.+.+++. +++++.|.+.+. .|.++...... ..|.-.+.|...++++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 789999999999999999655 599999999986 89999543221 246667889999999999
Q ss_pred eEEEeCCEEEEEEee
Q 047819 82 TAHIANSTLTVTIRK 96 (114)
Q Consensus 82 ~a~~~~GvL~I~ipK 96 (114)
.+.+.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.48 E-value=4.8e-06 Score=52.66 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=66.3
Q ss_pred ceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeE
Q 047819 4 TRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITA 83 (114)
Q Consensus 4 p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a 83 (114)
|+++++++.+...|.+.+||. ++++|.+..+ .|.|++.... + ...|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~-~l~v~~~~~~-----~---------~~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPT-SLSFKAKGGG-----G---------GKKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECC-EEEEEEEcCC-----C---------CeeEEEEeEhhhhccccccEE
Confidence 688999999999999999998 8899999986 8999974311 1 123666778999999999999
Q ss_pred EEeCCEEEEEEeeeC
Q 047819 84 HIANSTLTVTIRKKD 98 (114)
Q Consensus 84 ~~~~GvL~I~ipK~~ 98 (114)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.42 E-value=2.3e-06 Score=63.34 Aligned_cols=65 Identities=28% Similarity=0.377 Sum_probs=56.8
Q ss_pred CCeEEEEEEcCCC-CCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe--CC
Q 047819 12 PEFHVFKADLSGF-HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA--NS 88 (114)
Q Consensus 12 ~~~~~i~~~lPG~-~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~--~G 88 (114)
.+.+++++.|||+ +..+|+|.+.+. .|.|+.... .|.-.+.||..|+.+..+|.|. .+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 5789999999999 999999999986 899985421 3777899999999999999994 68
Q ss_pred EEEEEEe
Q 047819 89 TLTVTIR 95 (114)
Q Consensus 89 vL~I~ip 95 (114)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.32 E-value=9.4e-06 Score=48.97 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=64.1
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA 86 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~ 86 (114)
|++++++...|.+.++|+.++++.|++.++ .|.+++.... ...|.-.+.|...++++..+....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~~~---------------~~~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKLPS---------------GNDYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEECCC---------------CCcEEEeeecCceecchhcEEEEe
Confidence 678999999999999999999999999986 8999875311 113666678899999998888888
Q ss_pred CCEEEEEEeeeCC
Q 047819 87 NSTLTVTIRKKDI 99 (114)
Q Consensus 87 ~GvL~I~ipK~~~ 99 (114)
.+-+.|.|.|...
T Consensus 65 ~~kiei~L~K~~~ 77 (84)
T cd06489 65 STKIEIKLKKTEA 77 (84)
T ss_pred CcEEEEEEEcCCC
Confidence 9999999999753
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.16 E-value=4e-05 Score=46.06 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=60.8
Q ss_pred eeEEeCCCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEE
Q 047819 6 IDWDDTPEFHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAH 84 (114)
Q Consensus 6 ~dv~e~~~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~ 84 (114)
+.+.++++...|.+.+| ++.++++.+.+.++ .|.|+... + .+.-...|...++++....+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~--------~----------~~~l~~~L~~~I~~~~s~w~ 61 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKG--------G----------EPLLDGELYAKVKVDESTWT 61 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEECC--------C----------CceEcCcccCceeEcCCEEE
Confidence 36889999999999997 78999999999986 89998631 0 01122357889999998889
Q ss_pred EeC-CEEEEEEeeeCC
Q 047819 85 IAN-STLTVTIRKKDI 99 (114)
Q Consensus 85 ~~~-GvL~I~ipK~~~ 99 (114)
+.+ ..|.|+|+|..+
T Consensus 62 ~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 62 LEDGKLLEITLEKRNE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 999 999999999875
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.11 E-value=0.00012 Score=44.78 Aligned_cols=79 Identities=16% Similarity=0.358 Sum_probs=64.2
Q ss_pred eeeEEeCCCeEEEEEEcCCCCC---CCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEE-CCCCcccCc
Q 047819 5 RIDWDDTPEFHVFKADLSGFHK---HDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQ-LLENAMVDR 80 (114)
Q Consensus 5 ~~dv~e~~~~~~i~~~lPG~~~---~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~-lP~~vd~~~ 80 (114)
.++++++++...|.+.+|+... +++++.+.++ .|.|++... ++ ..|.-.+. |-..++++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~-----~~----------~~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDL-----NG----------KNYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECC-----CC----------cEEEEEehHhhCccCccc
Confidence 5789999999999999999876 9999999986 899987321 11 12444453 888999999
Q ss_pred eeEEEeCCEEEEEEeeeCC
Q 047819 81 ITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 81 i~a~~~~GvL~I~ipK~~~ 99 (114)
.+..+..+-+.|.|.|..+
T Consensus 67 s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cEEEEeCCEEEEEEEeCCC
Confidence 9999999999999999875
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.08 E-value=0.00012 Score=44.55 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=66.0
Q ss_pred eeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEE
Q 047819 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAH 84 (114)
Q Consensus 5 ~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~ 84 (114)
+.|++++++...|.+.+.|+.++++++.++++ .|.++..... ...|.-.+.|-..++++..+..
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~~---------------~~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFEG---------------NKEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECCC---------------CceEEEEeeccceEChhHcEEE
Confidence 57999999999999999999999999999875 8888754221 1136677888899999998888
Q ss_pred EeCCEEEEEEeeeCC
Q 047819 85 IANSTLTVTIRKKDI 99 (114)
Q Consensus 85 ~~~GvL~I~ipK~~~ 99 (114)
...+-+.|.|.|..+
T Consensus 66 v~~~kvei~L~K~~~ 80 (87)
T cd06488 66 MLPTKVEIKLRKAEP 80 (87)
T ss_pred ecCcEEEEEEEeCCC
Confidence 899999999999864
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.99 E-value=0.00018 Score=43.51 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=59.6
Q ss_pred eeEEeCCCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEE
Q 047819 6 IDWDDTPEFHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAH 84 (114)
Q Consensus 6 ~dv~e~~~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~ 84 (114)
++++++.+...|.+.+| |+.+++++|.+..+ .|.+... . +. .+ -.-.|...++++...-.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~--~-----~~----------~~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALK--D-----QA----------PL-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeC--C-----CC----------eE-EeCcccCcccccCcEEE
Confidence 46889999999999996 99999999999986 8888641 0 00 01 12367889999998888
Q ss_pred EeCC-EEEEEEeeeCCC
Q 047819 85 IANS-TLTVTIRKKDIK 100 (114)
Q Consensus 85 ~~~G-vL~I~ipK~~~~ 100 (114)
+++| .|.|.|.|..+.
T Consensus 62 i~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 62 IKENKSLEVSLIKKDEG 78 (85)
T ss_pred EeCCCEEEEEEEECCCC
Confidence 8777 699999998653
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.79 E-value=0.0007 Score=41.90 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=60.8
Q ss_pred ceeeEEeCCCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCcee
Q 047819 4 TRIDWDDTPEFHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRIT 82 (114)
Q Consensus 4 p~~dv~e~~~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 82 (114)
+.++++++.+...|++.+| |....|++|.+..+ .|.|... +..+ -.| .|...++++.-.
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~--------g~~~-----l~G------~L~~~I~~dest 65 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVK--------GQEV-----LKG------KLFDSVVADECT 65 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEEC--------CEEE-----EcC------cccCccCcccCE
Confidence 5678999999999999997 99999999999986 8888741 1101 012 578889999989
Q ss_pred EEEeCCE-EEEEEeeeCC
Q 047819 83 AHIANST-LTVTIRKKDI 99 (114)
Q Consensus 83 a~~~~Gv-L~I~ipK~~~ 99 (114)
-++++|- |.|.|.|...
T Consensus 66 Wtled~k~l~I~L~K~~~ 83 (93)
T cd06494 66 WTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred EEEECCcEEEEEEEeCCC
Confidence 9998885 8999999764
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.67 E-value=0.002 Score=40.82 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=61.6
Q ss_pred cceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCcee
Q 047819 3 PTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRIT 82 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 82 (114)
.|++++.++.+...|++.+|+ .++++|.++++ .|.++|... ++. .|.-.+.|=..++++..+
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~-~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk 62 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVED--SKDVKVDFEKS-KLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSK 62 (106)
T ss_pred CCcceeeECCCEEEEEEEeCC--CCCcEEEEecC-EEEEEEECC-----CCc----------EEEEEEEeecccCcccCe
Confidence 488999999999999999999 57999999986 899998321 111 244456777889998777
Q ss_pred EEEeCCEEEEEEeeeCC
Q 047819 83 AHIANSTLTVTIRKKDI 99 (114)
Q Consensus 83 a~~~~GvL~I~ipK~~~ 99 (114)
.....--+.+.+.|..+
T Consensus 63 ~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 63 HKRTDRSILCCLRKGKE 79 (106)
T ss_pred EEeCCceEEEEEEeCCC
Confidence 77777778888988864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.25 E-value=0.0031 Score=47.59 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=65.4
Q ss_pred ceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeE
Q 047819 4 TRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITA 83 (114)
Q Consensus 4 p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a 83 (114)
++.||++++++..|.+.+.|+.+++++|++.++ .|.|+..... + ..|...+.|-..|+++..+.
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~~~------~---------~~y~~~~~L~~~I~p~~s~~ 220 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEVPG------E---------DAYHLQPRLFGKIIPDKCKY 220 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEecCC------C---------cceeecccccccccccccEE
Confidence 568999999999999999999999999999986 8888854311 1 12555578888999999888
Q ss_pred EEeCCEEEEEEeeeCC
Q 047819 84 HIANSTLTVTIRKKDI 99 (114)
Q Consensus 84 ~~~~GvL~I~ipK~~~ 99 (114)
.....-+.|+|.|..+
T Consensus 221 ~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 221 EVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEecceEEEEEecCCC
Confidence 8888899999988753
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.95 E-value=0.0054 Score=42.26 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=58.4
Q ss_pred cceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCcee
Q 047819 3 PTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRIT 82 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 82 (114)
.++.|++++.+..+|.+-.+++.++|++|.+.++ .|.+..+.+.. ..|.-...|-.++.++..+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~~~g---------------~~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQLPSG---------------SEYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEecCCc---------------hhhhhhHHhccccccccee
Confidence 4688999999999999999999999999999975 88888665421 1133334455666676666
Q ss_pred EEEeCCEEEEEEeee
Q 047819 83 AHIANSTLTVTIRKK 97 (114)
Q Consensus 83 a~~~~GvL~I~ipK~ 97 (114)
-+.----+.|+|+|.
T Consensus 67 ~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKA 81 (196)
T ss_pred eEeeeeeEEEEeccc
Confidence 666666677777774
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.72 E-value=0.047 Score=33.19 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred eEEeCCCeEEEEEEcC-C--CCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeE
Q 047819 7 DWDDTPEFHVFKADLS-G--FHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITA 83 (114)
Q Consensus 7 dv~e~~~~~~i~~~lP-G--~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a 83 (114)
.+.++.+...+++.+| | .+..+++|.+..+ .|.|.-.. ... -+. =.|...++++.-.-
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g--------~~~--------~i~--G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKG--------QPP--------IID--GELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECC--------Cce--------EEe--CcccCcccccccEE
Confidence 4678889999999996 4 7899999999986 88886421 000 011 24678899988888
Q ss_pred EEeCC-EEEEEEeeeCC
Q 047819 84 HIANS-TLTVTIRKKDI 99 (114)
Q Consensus 84 ~~~~G-vL~I~ipK~~~ 99 (114)
.+++| .|.|.|-|...
T Consensus 63 tled~~~l~i~L~K~~~ 79 (87)
T cd06492 63 LIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEeCCCEEEEEEEECCC
Confidence 89886 89999999753
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.50 E-value=0.069 Score=33.55 Aligned_cols=80 Identities=6% Similarity=0.086 Sum_probs=59.6
Q ss_pred cceeeEEeCCCeEEEEEEcC-CC-CCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCc
Q 047819 3 PTRIDWDDTPEFHVFKADLS-GF-HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDR 80 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~~lP-G~-~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 80 (114)
...+.+.++-+...+++.|| |. +..+++|.+... .|.|.-..... ...+ +.. .|+..++++.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~~~----~~~~---------i~G--~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDGGG----EKVL---------MEG--EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecCCC----CceE---------EeC--cccCcccCcc
Confidence 45688999999999999999 64 688999999986 88887531000 0001 111 4778899998
Q ss_pred eeEEEeCC-EEEEEEeeeC
Q 047819 81 ITAHIANS-TLTVTIRKKD 98 (114)
Q Consensus 81 i~a~~~~G-vL~I~ipK~~ 98 (114)
-.-.+++| .|.|+|-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 89999986 5899999975
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.03 E-value=0.16 Score=30.76 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=53.5
Q ss_pred eeEEeCCCeEEEEEEcCCC--CCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeE
Q 047819 6 IDWDDTPEFHVFKADLSGF--HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITA 83 (114)
Q Consensus 6 ~dv~e~~~~~~i~~~lPG~--~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a 83 (114)
.|+++++++..|.+...+. +..++.+....+ .|.|+-... + ..|...+.|=..++++. ..
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~-------~---------~~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG-------D---------KSYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC-------C---------ceEEEeeeccccCCCCc-EE
Confidence 4899999999999998854 555555555554 788874321 0 12666677878888774 55
Q ss_pred EEe--CCEEEEEEeeeCC
Q 047819 84 HIA--NSTLTVTIRKKDI 99 (114)
Q Consensus 84 ~~~--~GvL~I~ipK~~~ 99 (114)
++. -|-+.|+|.|..+
T Consensus 63 ~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETGKIELVLKKKEP 80 (87)
T ss_pred EEcccCceEEEEEEcCCC
Confidence 554 7899999999765
No 42
>PF14913 DPCD: DPCD protein family
Probab=95.45 E-value=0.22 Score=34.72 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=57.3
Q ss_pred cceeeEEeCCCeEEEEE-EcCCCCCCCEEEEEeCC-cEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCC-----
Q 047819 3 PTRIDWDDTPEFHVFKA-DLSGFHKHDVKVEIEDG-RVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLEN----- 75 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~-~lPG~~~~di~v~~~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~----- 75 (114)
+|.+-=.++...|..++ +||. .++-.+|+++++ +.++|+-.- ..|.+.|.+|+-
T Consensus 86 nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtN------------------KKYyKk~~IPDl~R~~l 146 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTN------------------KKYYKKFSIPDLDRCGL 146 (194)
T ss_pred CCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcC------------------ccceeEecCCcHHhhCC
Confidence 45555567788899999 6775 888888998843 468887431 347778889842
Q ss_pred -cccCceeEEEeCCEEEEEEeeeC
Q 047819 76 -AMVDRITAHIANSTLTVTIRKKD 98 (114)
Q Consensus 76 -vd~~~i~a~~~~GvL~I~ipK~~ 98 (114)
.+.+.++..+.|..|.|+..|..
T Consensus 147 ~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 147 PLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred CcchhhceeeeecCeEEEEecCcH
Confidence 36677999999999999998764
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=88.58 E-value=1.6 Score=26.57 Aligned_cols=34 Identities=6% Similarity=0.189 Sum_probs=29.6
Q ss_pred EEEEEEECCCCcccCceeEEEeCCEEEEEEeeeCC
Q 047819 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 65 ~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~~ 99 (114)
.|.-...|| +++.+.|+.++.+|.|+|+--+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 577788899 8899999999999999999987654
No 44
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=88.53 E-value=4.7 Score=27.83 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=54.4
Q ss_pred ceeeEEeCCCeEEEEEEcC-CC-CCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCce
Q 047819 4 TRIDWDDTPEFHVFKADLS-GF-HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRI 81 (114)
Q Consensus 4 p~~dv~e~~~~~~i~~~lP-G~-~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 81 (114)
+.+.|..+=....+.+.+| |+ +..++.|.+... .|.|.-..... +. -| .|...++.+..
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~-hI~V~~kg~~~-------il-----dG------~L~~~vk~des 79 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSK-HIKVGLKGQPP-------IL-----DG------ELSHSVKVDES 79 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeeee-EEEEecCCCCc-------ee-----cC------ccccccccccc
Confidence 4567777777888998885 88 899999999974 78777432211 00 12 35677889999
Q ss_pred eEEEeCCEEEEEEeeeC
Q 047819 82 TAHIANSTLTVTIRKKD 98 (114)
Q Consensus 82 ~a~~~~GvL~I~ipK~~ 98 (114)
...+++|.+.+.+-++.
T Consensus 80 ~WtiEd~k~i~i~l~K~ 96 (179)
T KOG2265|consen 80 TWTIEDGKMIVILLKKS 96 (179)
T ss_pred eEEecCCEEEEEEeecc
Confidence 99999997777665553
No 45
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=87.76 E-value=5.9 Score=25.98 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=47.2
Q ss_pred eeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEE
Q 047819 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAH 84 (114)
Q Consensus 5 ~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~ 84 (114)
.+.|...++ ..+++...| +.+++..+++ .|.|+.............+ ... ...-.-.+.||.+...+.++..
T Consensus 67 ~V~I~~~~~-~~i~v~~~~---k~~~~~~~~~-~L~I~~~~~~~~~~~~~~~--~~~-~~~~~i~I~lP~~~~l~~i~i~ 138 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEYNG---KKPEISVEGG-TLTIKSKDRESFFFKGFNF--NNS-DNKSKITIYLPKDYKLDKIDIK 138 (166)
T ss_pred eEEEEEcCC-ccEEEEEcC---cEEEEEEcCC-EEEEEEecccccccceEEE--ccc-CCCcEEEEEECCCCceeEEEEE
Confidence 344554333 444555521 2677888776 8999876222111111111 111 2345567899999888899999
Q ss_pred EeCCEEEEE
Q 047819 85 IANSTLTVT 93 (114)
Q Consensus 85 ~~~GvL~I~ 93 (114)
..+|-+.+.
T Consensus 139 ~~~G~i~i~ 147 (166)
T PF13349_consen 139 TSSGDITIE 147 (166)
T ss_pred eccccEEEE
Confidence 999987765
No 46
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=5 Score=27.67 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=58.6
Q ss_pred CCcceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCc
Q 047819 1 MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDR 80 (114)
Q Consensus 1 ~~~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 80 (114)
|..|.+.|.+..+-..+++.++-. .+..|.++.. .|+++|.-... ...+...|.|=..||+++
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~~-~l~fs~k~~~d--------------~~~~~~~ief~~eIdpe~ 67 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEPS-KLTFSCKSGAD--------------NHKYENEIEFFDEIDPEK 67 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccC--ccceeecccc-EEEEEeccCCC--------------ceeeEEeeehhhhcCHhh
Confidence 356888999999999999999865 4556666665 89999875421 123566688888899998
Q ss_pred eeEEEeCCEEEEEEeeeCCC
Q 047819 81 ITAHIANSTLTVTIRKKDIK 100 (114)
Q Consensus 81 i~a~~~~GvL~I~ipK~~~~ 100 (114)
.+-+-. +.+...++++...
T Consensus 68 sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 68 SKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred cccccc-ceEEEEEEEcccc
Confidence 776665 6666666665443
No 47
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=86.83 E-value=1.5 Score=26.34 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=29.2
Q ss_pred EEEEEEECCCCcccCceeEEEeCCEEEEEEeeeCC
Q 047819 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 65 ~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~~ 99 (114)
.|.-.+.|| +++++.|+.++++|.|+|+--+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~ 41 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVR 41 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 477788899 7889999999999999999876553
No 48
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=86.33 E-value=1.6 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=28.3
Q ss_pred eEEEEEEECCCCcccCceeEEEeCCEEEEEEeee
Q 047819 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKK 97 (114)
Q Consensus 64 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~ 97 (114)
..|.-.+.|| +++++.|+.+++||.|+|+--+.
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3577788999 78899999999999999988654
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=85.55 E-value=2.3 Score=25.35 Aligned_cols=33 Identities=6% Similarity=0.222 Sum_probs=28.6
Q ss_pred eEEEEEEECCCCcccCceeEEEeCCEEEEEEeee
Q 047819 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKK 97 (114)
Q Consensus 64 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~ 97 (114)
..|.-.+.|| +++++.|+.++.+|.|+|+--+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3588889999 89999999999999999998654
No 50
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=85.30 E-value=2.1 Score=25.79 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=28.3
Q ss_pred eEEEEEEECCCCcccCceeEEEeCCEEEEEEeee
Q 047819 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKK 97 (114)
Q Consensus 64 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~ 97 (114)
..|.-.+.|| +++++.|+.++.+|.|+|+--+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3578888999 88899999999999999998653
No 51
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=85.09 E-value=3.1 Score=25.05 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred eEEEEEEECCCCcccCceeEEEeCCEEEEEEeeeCCC
Q 047819 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIK 100 (114)
Q Consensus 64 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~~~ 100 (114)
..|.-.+.|| +++.+.|+..++++.|+|+-.+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3688889999 68999999999999999997766543
No 52
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=84.66 E-value=3.7 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=28.7
Q ss_pred EEEEEEECCCCcccCceeEEEeCCEEEEEEeeeC
Q 047819 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKD 98 (114)
Q Consensus 65 ~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~ 98 (114)
.|.-.+.|| +++++.|+.+.++|.|+|+--+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477788999 889999999999999999976653
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=83.60 E-value=3.2 Score=25.22 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=28.0
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEecccc
Q 047819 13 EFHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKE 50 (114)
Q Consensus 13 ~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~~~~~~~ 50 (114)
..|.-.+.|| +++.+.++-.+.+| .|.|+..+.....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~~ 92 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEEE 92 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSCT
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEcccccc
Confidence 4677789998 78999999999887 9999988776543
No 54
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=83.30 E-value=3.4 Score=23.96 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEE
Q 047819 11 TPEFHVFKADLS-GFHKHDVKVEIEDGRVLCISGE 44 (114)
Q Consensus 11 ~~~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~ 44 (114)
....|.-.+.|| +++.+.++..+.+| .|.|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 357899999999 77999999999997 9999853
No 55
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=82.78 E-value=3.9 Score=24.14 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=30.0
Q ss_pred EEEEEEECCCCcccCceeEEEeCCEEEEEEeeeCC
Q 047819 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 65 ~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~~ 99 (114)
.|.-.+.|| ++.++.|+..++++.|+|.-.+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 588889999 5999999999999999999877654
No 56
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=82.68 E-value=6.7 Score=22.19 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=29.9
Q ss_pred eeEE-eCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEe
Q 047819 6 IDWD-DTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKK 46 (114)
Q Consensus 6 ~dv~-e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~ 46 (114)
+.+. -..+.|.|++..||+....-.|.+..+....|+.+.+
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 3444 3466789999999998888888888666777776543
No 57
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=82.38 E-value=2.7 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCCCCCEEEEEeCCcEEEEEE
Q 047819 13 EFHVFKADLSGFHKHDVKVEIEDGRVLCISG 43 (114)
Q Consensus 13 ~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g 43 (114)
..|.-.+.||.+..+.++-.+.+| .|.|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 356667889999999999999988 999984
No 58
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=81.91 E-value=3.5 Score=24.69 Aligned_cols=33 Identities=9% Similarity=0.223 Sum_probs=28.1
Q ss_pred eEEEEEEECCCCcccCceeEEEeCCEEEEEEeee
Q 047819 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKK 97 (114)
Q Consensus 64 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~ 97 (114)
..|.-.+.+| +++++.|+.++.++.|+|.--+.
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3578888898 88999999999999999998543
No 59
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=81.48 E-value=13 Score=27.36 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=65.7
Q ss_pred CCcceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCc
Q 047819 1 MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDR 80 (114)
Q Consensus 1 ~~~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 80 (114)
|+..+.||..++...++.+.--|.-++.-.|..+. ..|.|+-.-.. + ...|...+.|=.-++++.
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~------g--------na~fd~d~kLwgvvnve~ 276 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGF------G--------NASFDLDYKLWGVVNVEE 276 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecC------C--------Cceeeccceeeeeechhh
Confidence 35667899999999999999999888887888775 47887743211 0 234777777777789999
Q ss_pred eeEEEeCCEEEEEEeeeCCC
Q 047819 81 ITAHIANSTLTVTIRKKDIK 100 (114)
Q Consensus 81 i~a~~~~GvL~I~ipK~~~~ 100 (114)
.++.+-.--+.|+|+|..+.
T Consensus 277 s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 277 SSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred ceEEeecceEEEEEeccCCC
Confidence 99999888999999998763
No 60
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=80.98 E-value=6.1 Score=23.76 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcccCceeEEEeCCEEEEEEeeeCC
Q 047819 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 65 ~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~~ 99 (114)
.|.-.+.|| ++.++.|+.+++++.|+|+--+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 577788898 7889999999999999999876543
No 61
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=80.55 E-value=5.1 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=25.1
Q ss_pred eEEEEEEcC-CCCCCCEEEEEe-CCcEEEEEE
Q 047819 14 FHVFKADLS-GFHKHDVKVEIE-DGRVLCISG 43 (114)
Q Consensus 14 ~~~i~~~lP-G~~~~di~v~~~-~~~~L~I~g 43 (114)
.|.=.+.|| +++.++|+-.+. +| .|.|.+
T Consensus 59 ~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 59 NFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 567788998 999999999999 65 999986
No 62
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=80.15 E-value=4.5 Score=24.26 Aligned_cols=34 Identities=3% Similarity=0.204 Sum_probs=29.1
Q ss_pred eEEEEEEECCCCcccCceeEEEeCCEEEEEEeeeC
Q 047819 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKD 98 (114)
Q Consensus 64 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~ 98 (114)
..|.-.+.|| +++++.|+.++.++.|+|+--+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 3588889999 899999999999999999986643
No 63
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=79.50 E-value=4.9 Score=24.14 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEE
Q 047819 12 PEFHVFKADLS-GFHKHDVKVEIEDGRVLCISG 43 (114)
Q Consensus 12 ~~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g 43 (114)
...|.-.+.|| +++.+.++-.+.+| .|.|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 35788889999 78999999999998 999974
No 64
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=79.10 E-value=10 Score=23.48 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=29.3
Q ss_pred cceeeEEeCCCeEEEEEEcCCC-----CCCCEEEEEeCCcEEEEE
Q 047819 3 PTRIDWDDTPEFHVFKADLSGF-----HKHDVKVEIEDGRVLCIS 42 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~~lPG~-----~~~di~v~~~~~~~L~I~ 42 (114)
.|++.|+++++.|.|.+--+.- .++.-.|.-++| .+.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 5899999999999999866543 555666676666 66665
No 65
>PRK10743 heat shock protein IbpA; Provisional
Probab=78.34 E-value=7.3 Score=25.61 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=29.5
Q ss_pred eEEEEEEECCCCcccCceeEEEeCCEEEEEEeeeCC
Q 047819 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 64 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~~ 99 (114)
..|.-...|| +++.+.|..++++|.|+|+--+...
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECcc
Confidence 4577788899 8899999999999999999866543
No 66
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=74.83 E-value=8.8 Score=21.12 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=20.7
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEecc
Q 047819 22 SGFHKHDVKVEIEDGRVLCISGEKKIE 48 (114)
Q Consensus 22 PG~~~~di~v~~~~~~~L~I~g~~~~~ 48 (114)
++++..+|++.+.+| .+.++|..+..
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 467777999999987 99999998764
No 67
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=71.04 E-value=2.8 Score=31.26 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=54.8
Q ss_pred eeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEE
Q 047819 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAH 84 (114)
Q Consensus 5 ~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~ 84 (114)
++++.++.+...|-+.-|-+..+++++.++.+ .|.|+-+.+... .-|.-.+.|-..|+++..+-+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~~s~k 242 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRLR--------------LWNDITISLYKEVYPDIRSIK 242 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccccc--------------hHHHhhhhhhhhcCcchhhhh
Confidence 56778888888888888999999999999986 999996643311 113334556677777766555
Q ss_pred EeCCEEEEEEeeeC
Q 047819 85 IANSTLTVTIRKKD 98 (114)
Q Consensus 85 ~~~GvL~I~ipK~~ 98 (114)
.---.+.|.+.|..
T Consensus 243 ~fsK~~e~~l~KV~ 256 (368)
T COG5091 243 SFSKRVEVHLRKVE 256 (368)
T ss_pred hcchhheehhhhhh
Confidence 54456666665543
No 68
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=70.95 E-value=26 Score=24.55 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=52.7
Q ss_pred eeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEE-ECCCCcccCceeEE
Q 047819 6 IDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRF-QLLENAMVDRITAH 84 (114)
Q Consensus 6 ~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~-~lP~~vd~~~i~a~ 84 (114)
+-|-+.++..-+.+.|-|+..+++++++... .|-+.-.-- ++ .+|.-.+ .|-.++++++-.-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~dl-----qG----------K~y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHDL-----QG----------KNYRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeeec-----CC----------cceeeehhhhccccChhhcccc
Confidence 4566778888999999999999999999975 776663211 11 1232222 23466788877777
Q ss_pred EeCCEEEEEEeeeC
Q 047819 85 IANSTLTVTIRKKD 98 (114)
Q Consensus 85 ~~~GvL~I~ipK~~ 98 (114)
.+-....|.+.|..
T Consensus 141 vKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 141 VKTDTVLILCKKVE 154 (224)
T ss_pred cccceEEEeehhhh
Confidence 88777778875544
No 69
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=70.39 E-value=19 Score=23.64 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=29.5
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEeccc
Q 047819 13 EFHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEK 49 (114)
Q Consensus 13 ~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~~~~~~ 49 (114)
..|.-.+.|| +++.+.++-++.+| .|.|+-.+..+.
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~~ 136 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEPE 136 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEeccccc
Confidence 5688889999 66888899999998 999997776543
No 70
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=70.03 E-value=14 Score=24.50 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=28.7
Q ss_pred EEEEEEECCCCcccCceeEEEeCCEEEEEEeeeC
Q 047819 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKD 98 (114)
Q Consensus 65 ~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ipK~~ 98 (114)
.|.-...|| +++.+.|...+++|.|+|+--+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 578888999 889999999999999999987553
No 71
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=69.63 E-value=20 Score=21.40 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=25.7
Q ss_pred CcccEEEeeeeeeEEEEEEECCCCcccCc-eeEEEeCCEEE
Q 047819 52 RTDEGHCLEVVVGKFSRRFQLLENAMVDR-ITAHIANSTLT 91 (114)
Q Consensus 52 ~~~~~~~~e~~~~~f~r~~~lP~~vd~~~-i~a~~~~GvL~ 91 (114)
..+.|....-.+--|.|.|.+|+...+.. +.-.|.+|-+.
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~ 69 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVS 69 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEE
Confidence 44555555555667999999999977754 88889888443
No 72
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=68.25 E-value=20 Score=20.40 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=27.0
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEe
Q 047819 13 EFHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKK 46 (114)
Q Consensus 13 ~~~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~~~ 46 (114)
+.|.+.++|| .+++++.+..+.++ .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 5588888998 45999999999986 899996654
No 73
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=67.28 E-value=38 Score=23.35 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=31.4
Q ss_pred CCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
+++++++++++ .+.|+|.+ |...+.|.-| .+....++|.|.+...
T Consensus 13 P~~V~v~i~~~-~v~VkGp~------------------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGL-VVTVKGPK------------------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECC-EEEEECCC------------------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 67889999875 99999863 5566555322 3566678888877754
No 74
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=66.74 E-value=11 Score=25.89 Aligned_cols=35 Identities=26% Similarity=0.197 Sum_probs=28.3
Q ss_pred EEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEeccc
Q 047819 15 HVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEK 49 (114)
Q Consensus 15 ~~i~~~lP-G~~~~di~v~~~~~~~L~I~g~~~~~~ 49 (114)
|.=+..|| |++++.|.-.+..++.|+|+|.+....
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 44456788 999999999999656999999876644
No 75
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.37 E-value=3.2 Score=32.43 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCcceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCccc-C
Q 047819 1 MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMV-D 79 (114)
Q Consensus 1 ~~~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~-~ 79 (114)
|..|.+.++.+++...|.+..|-.+...+.+..-++ ....+ .+.|.-++.+|..+.. .
T Consensus 1 Mltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~n-m~~f~--------------------~~pyflrl~~p~~~~~d~ 59 (466)
T KOG3247|consen 1 MLTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAAN-MASFS--------------------AGPYFLRLAGPGMVEDDA 59 (466)
T ss_pred CCCceeeeeecCceEEEEeeccccchhccchhhHhh-hhhhc--------------------cchhHHhhcCcchhhhhc
Confidence 788999999999999999999977777777776654 55555 2345555666755422 2
Q ss_pred ceeEE--EeCCEEEEEEeeeCCCCC
Q 047819 80 RITAH--IANSTLTVTIRKKDIKKH 102 (114)
Q Consensus 80 ~i~a~--~~~GvL~I~ipK~~~~~~ 102 (114)
.-.|+ .++|...|.+||..+.+.
T Consensus 60 ~~n~s~d~kd~~~~vK~~K~~~~e~ 84 (466)
T KOG3247|consen 60 RPNASYDAKDGYAHVKVPKFHPGEH 84 (466)
T ss_pred cccCccccccceeEEeecCCCcccc
Confidence 23333 367999999998766543
No 76
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=65.74 E-value=6.8 Score=22.15 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=11.5
Q ss_pred CceeEEEeCCEEEEE
Q 047819 79 DRITAHIANSTLTVT 93 (114)
Q Consensus 79 ~~i~a~~~~GvL~I~ 93 (114)
..|.|.|+||+|+-.
T Consensus 3 ~~I~aiYe~GvlkPl 17 (60)
T PF01954_consen 3 KVIEAIYENGVLKPL 17 (60)
T ss_dssp --EEEEEETTEEEEC
T ss_pred ceEEEEEECCEEEEC
Confidence 458999999998765
No 77
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=64.63 E-value=25 Score=20.31 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=26.3
Q ss_pred EEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 65 ~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
...-.|.+|..++.+.+...+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 4556678999999999999999998999886
No 78
>PRK10568 periplasmic protein; Provisional
Probab=64.26 E-value=20 Score=24.98 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEec
Q 047819 22 SGFHKHDVKVEIEDGRVLCISGEKKI 47 (114)
Q Consensus 22 PG~~~~di~v~~~~~~~L~I~g~~~~ 47 (114)
|+++..+|+|.+.+| .+.++|....
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 677788999999987 9999999985
No 79
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=62.66 E-value=47 Score=22.70 Aligned_cols=44 Identities=27% Similarity=0.476 Sum_probs=30.8
Q ss_pred CCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
+++++|+++++ .+.|+|. .|...+.| |.. +....+++.|.+...
T Consensus 11 P~~V~v~~~~~-~v~v~Gp------------------~G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVKGP------------------KGELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCC-EEEEEcC------------------CeEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 57889999875 9999986 35566555 533 455568888777754
No 80
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=62.48 E-value=33 Score=20.91 Aligned_cols=35 Identities=0% Similarity=0.112 Sum_probs=29.2
Q ss_pred eeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEE
Q 047819 60 EVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTI 94 (114)
Q Consensus 60 e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~i 94 (114)
........-.|++|.++....+...+...-|.|.+
T Consensus 11 ~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 11 YQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 33345567778999999999999999999999987
No 81
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=61.70 E-value=45 Score=23.20 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 25 HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 25 ~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
=+++++|+++++ .+.|+|. .|...+.|.=|. ..+....++|.|.|.-+
T Consensus 12 IP~~V~V~i~~~-~v~VkGp------------------~G~L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKSR-KVTVTGK------------------YGELTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEECC-EEEEECC------------------CceEEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 367899999975 9999986 355665553221 24666678888777744
No 82
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=61.05 E-value=51 Score=22.57 Aligned_cols=44 Identities=27% Similarity=0.469 Sum_probs=30.6
Q ss_pred CCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
+++++|+++++ .+.|+|. .|...+.| |.. +....+++.|.+...
T Consensus 12 P~~V~v~~~~~-~v~vkGp------------------~G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGN-VVTVKGP------------------KGELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECC-EEEEECC------------------CEEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 57889999875 9999986 35666666 433 344568887777643
No 83
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=60.92 E-value=50 Score=22.52 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
++++++++.++ .+.|+|.+ |...+.|. |. .+....+++.|.+..+
T Consensus 7 P~~V~v~i~~~-~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGN-IVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCC-EEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 46788999875 99999863 55555553 22 3555678888888754
No 84
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=57.83 E-value=46 Score=23.08 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=28.0
Q ss_pred CCCCEEEEEeCCcEEEEEEEEeccc--ccCcccEE-EeeeeeeEEEEEEECCCC
Q 047819 25 HKHDVKVEIEDGRVLCISGEKKIEK--EERTDEGH-CLEVVVGKFSRRFQLLEN 75 (114)
Q Consensus 25 ~~~di~v~~~~~~~L~I~g~~~~~~--~~~~~~~~-~~e~~~~~f~r~~~lP~~ 75 (114)
+++++++ ++| .|+|++.+.... .-..+.+. .....+|.|+-++++|..
T Consensus 30 ~~~nv~v--~~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEF--SDG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEE--ECC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 3555554 476 899998765421 01122222 223467899999999853
No 85
>PF09985 DUF2223: Domain of unknown function (DUF2223); InterPro: IPR019248 This entry represents various prokaryotic membrane-anchored proteins predicted to be involved in the regulation of amylopullulanase. ; PDB: 1UG9_A 1ULV_A.
Probab=50.30 E-value=92 Score=22.29 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=49.9
Q ss_pred eeeEEeCCCeEEEEEEcC----------CCCCCCEEEEEeCCcEEEEEEEEecc-c-ccCcccEEEeeeeeeEEEEEEEC
Q 047819 5 RIDWDDTPEFHVFKADLS----------GFHKHDVKVEIEDGRVLCISGEKKIE-K-EERTDEGHCLEVVVGKFSRRFQL 72 (114)
Q Consensus 5 ~~dv~e~~~~~~i~~~lP----------G~~~~di~v~~~~~~~L~I~g~~~~~-~-~~~~~~~~~~e~~~~~f~r~~~l 72 (114)
.+.|++.++.|++++.+. ||+..-|.|.++....-.-+.-..-. . -...+.+...--.+++....+..
T Consensus 35 ~f~v~~~g~~~~f~~~~~~l~NpW~~P~GFS~q~i~IYid~~~gg~~~~~~pG~n~~~~~~Wd~ai~i~Gw~~~~~~~~~ 114 (228)
T PF09985_consen 35 SFKVYEDGDNLVFRFTFADLTNPWNGPNGFSLQIIQIYIDTPDGGGTSTLKPGLNVEFGHPWDYAIRISGWGSYGNAIYD 114 (228)
T ss_dssp EEEEEEETTEEEEEEEESS---TT---SS-SSEEEEEEEE-S-SS-EE-S-GGG-EEESS-ECEEEEEEST--T--EEE-
T ss_pred EEEEEEcCCEEEEEEEECCCCCCcccccCccceEEEEEEecCCCCcccccCCcccCCCCCCccEEEEEEeeecccceEEc
Confidence 578999999999999873 78888889998854111111100000 0 02222222211122223567777
Q ss_pred CCCcc-cC--ceeEEEeCCEEEEEEeeeCC
Q 047819 73 LENAM-VD--RITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 73 P~~vd-~~--~i~a~~~~GvL~I~ipK~~~ 99 (114)
|+.-. .. .+.+.-.++.+++.+||..-
T Consensus 115 ~~G~~~~~~~~v~~~~~~~~I~~~vpk~~L 144 (228)
T PF09985_consen 115 ADGTAISGAPQVSVDPSGNTIIVEVPKKYL 144 (228)
T ss_dssp TTS-E-EE--EEEEECCCTEEEEEEEGGGS
T ss_pred cCCccCCCcceEEeccCCCEEEEEcCHHHc
Confidence 87655 22 35555568999999999943
No 86
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=49.90 E-value=41 Score=20.40 Aligned_cols=38 Identities=3% Similarity=-0.060 Sum_probs=28.0
Q ss_pred EEeCCCeEEEEEEc-CCCCCCCEEEEEeC--CcEEEEEEEEec
Q 047819 8 WDDTPEFHVFKADL-SGFHKHDVKVEIED--GRVLCISGEKKI 47 (114)
Q Consensus 8 v~e~~~~~~i~~~l-PG~~~~di~v~~~~--~~~L~I~g~~~~ 47 (114)
+.++++++.|.+.+ ||-+++.|.- +.+ + .|.|+-..+.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~g-~~~~~~-~Lki~v~ApP 41 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIVG-YNEWRK-RVEVKIKAPP 41 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceecc-ccCCCC-eEEEEEecCC
Confidence 45788899999988 9998888843 455 4 7888765543
No 87
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=48.38 E-value=85 Score=21.51 Aligned_cols=44 Identities=32% Similarity=0.568 Sum_probs=29.2
Q ss_pred CCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
+++++|+++++ .+.|+|.+ |...+ .||.. +....+++.|.+..+
T Consensus 12 P~~V~v~i~~~-~v~vkGp~------------------G~l~~--~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQ-IIKVKGPK------------------GTLSR--KIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC------------------EEEEE--ECCCC-----eEEEEeCCEEEEEcC
Confidence 46788999874 99999863 44554 34543 455668887777644
No 88
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=47.92 E-value=34 Score=22.62 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=22.5
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEecc
Q 047819 22 SGFHKHDVKVEIEDGRVLCISGEKKIE 48 (114)
Q Consensus 22 PG~~~~di~v~~~~~~~L~I~g~~~~~ 48 (114)
.|+...+++|.+++| .++++|.....
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 477888899999987 99999998864
No 89
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=46.53 E-value=25 Score=22.07 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.7
Q ss_pred CceeEEEeCCEEEEEEe
Q 047819 79 DRITAHIANSTLTVTIR 95 (114)
Q Consensus 79 ~~i~a~~~~GvL~I~ip 95 (114)
..+.+.+.+|+|+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45788889999999997
No 90
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.96 E-value=68 Score=19.82 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=26.2
Q ss_pred eeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEE
Q 047819 6 IDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGE 44 (114)
Q Consensus 6 ~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~ 44 (114)
+++.+++| .|....||.+ .|.+..++. .|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~k-kL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENK-KLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccc-eEEEecc
Confidence 57788888 6777899986 477777765 8999873
No 91
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=45.71 E-value=1.1e+02 Score=21.90 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=27.3
Q ss_pred EEEeCCcEEEEEEEEeccccc-CcccEE------EeeeeeeEEEEEEECCCC
Q 047819 31 VEIEDGRVLCISGEKKIEKEE-RTDEGH------CLEVVVGKFSRRFQLLEN 75 (114)
Q Consensus 31 v~~~~~~~L~I~g~~~~~~~~-~~~~~~------~~e~~~~~f~r~~~lP~~ 75 (114)
+.+++| .|+|++.+...... ....+. .....+|.|+-++++|..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 566777 89999987653211 111121 223467899999999953
No 92
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=44.53 E-value=97 Score=20.97 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCCCEEEEEeC-CcEEEEEEEEecc-cccCcccE-E-EeeeeeeEEEEEEECCCC
Q 047819 25 HKHDVKVEIED-GRVLCISGEKKIE-KEERTDEG-H-CLEVVVGKFSRRFQLLEN 75 (114)
Q Consensus 25 ~~~di~v~~~~-~~~L~I~g~~~~~-~~~~~~~~-~-~~e~~~~~f~r~~~lP~~ 75 (114)
+++++ .+++ | .|.|++.+... ..-..+.+ . .....+|.|+-++++|..
T Consensus 28 ~~~nv--~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNNV--YVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccCE--EEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 45554 4454 6 89999887643 11111112 2 334567899999999965
No 93
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=43.91 E-value=32 Score=21.61 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.1
Q ss_pred CceeEEEeCCEEEEEEee
Q 047819 79 DRITAHIANSTLTVTIRK 96 (114)
Q Consensus 79 ~~i~a~~~~GvL~I~ipK 96 (114)
..+.+.+.+|+|+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 358899999999999953
No 94
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=43.38 E-value=33 Score=20.05 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=23.8
Q ss_pred eEEeCCCeEEEEEEcCCCCCCCEEEEEeCC
Q 047819 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDG 36 (114)
Q Consensus 7 dv~e~~~~~~i~~~lPG~~~~di~v~~~~~ 36 (114)
-|.+..+.|.+++.+=|+....|.+.-.+|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG 43 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNG 43 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCC
Confidence 577788899999999999999999998877
No 95
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=43.04 E-value=26 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.4
Q ss_pred eeEEEeCCEEEEEEeee
Q 047819 81 ITAHIANSTLTVTIRKK 97 (114)
Q Consensus 81 i~a~~~~GvL~I~ipK~ 97 (114)
+.+.+.+|+|+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999753
No 96
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=42.87 E-value=25 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.2
Q ss_pred ceeEEEeCCEEEEEEee
Q 047819 80 RITAHIANSTLTVTIRK 96 (114)
Q Consensus 80 ~i~a~~~~GvL~I~ipK 96 (114)
.+.+.+.+|+|+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 37788899999999974
No 97
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=42.85 E-value=1.1e+02 Score=21.20 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=30.3
Q ss_pred CCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEEe
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ip 95 (114)
+++++|+++++ .+.|+|.+ |...+. ||..- -.+....+++.|.+.-+
T Consensus 12 P~~V~V~i~~~-~ItVkGpk------------------G~Ls~~--~~~~~--~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDR-IVTVKGKR------------------GTLTKD--LRHLQ--LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCC-EEEEECCC------------------cEEEEE--cCCCC--cEEEEEecCCEEEEEeC
Confidence 57889999875 99999863 445543 34310 12455677888777743
No 98
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=42.22 E-value=70 Score=22.22 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=28.4
Q ss_pred CCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEE
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVT 93 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ 93 (114)
+..+.+...++ .+.|+|..+.-... =.+......-.+..+|++|.|.+.
T Consensus 130 ~~~i~v~~~~~-~V~V~Gtlkt~vg~------------------~~~~~~~k~Y~l~~~y~~G~l~L~ 178 (188)
T PRK13726 130 QTSVRVWPQYG-RVDIRGVLKTWIGD------------------SKPFTEIKHYILILKRENGVTWLD 178 (188)
T ss_pred eeeEEEccCCC-EEEEEEEEEEEECC------------------cccCchheEEEEEEEEcCCEEEEE
Confidence 35566665565 88888876542110 001222333457788899988885
No 99
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=41.15 E-value=56 Score=22.45 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=30.5
Q ss_pred CcceeeEEeCCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEE
Q 047819 2 IPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGE 44 (114)
Q Consensus 2 ~~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~ 44 (114)
+...|++...+=.=-|.+.+||+..+.+.+...++ .|.=+|.
T Consensus 3 sad~MNVLY~G~~NpisIsvpgv~~~~v~~s~~gg-sl~~~g~ 44 (181)
T PF12080_consen 3 SADKMNVLYRGVDNPISISVPGVPSNKVPASATGG-SLSKSGG 44 (181)
T ss_pred cccccceEecCCCCcEEEEeCCCCccccEEEeeCC-EEEecCC
Confidence 44567777777777789999999999999887754 4444433
No 100
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=40.75 E-value=14 Score=24.79 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.0
Q ss_pred CcccCceeEEEeCCEEEEEEe
Q 047819 75 NAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 75 ~vd~~~i~a~~~~GvL~I~ip 95 (114)
.+..+.--+.|.||+|+|.++
T Consensus 68 ~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 68 EVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred hcCccccccccccceEEEEec
Confidence 344455667799999999987
No 101
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=40.70 E-value=38 Score=17.55 Aligned_cols=18 Identities=22% Similarity=0.006 Sum_probs=12.8
Q ss_pred eEEe-CCCeEEEEE-EcCCC
Q 047819 7 DWDD-TPEFHVFKA-DLSGF 24 (114)
Q Consensus 7 dv~e-~~~~~~i~~-~lPG~ 24 (114)
-+.. .++.|..++ ++||+
T Consensus 5 ~i~~~~~~~y~~~~pdlpg~ 24 (48)
T PF03681_consen 5 IIEKDEDGGYVAYFPDLPGC 24 (48)
T ss_dssp EEEE-TSSSEEEEETTCCTC
T ss_pred EEEECCCCeEEEEeCCccCh
Confidence 3444 777888887 77876
No 102
>PRK05090 hypothetical protein; Validated
Probab=39.97 E-value=87 Score=19.32 Aligned_cols=38 Identities=5% Similarity=-0.079 Sum_probs=29.1
Q ss_pred EEeCCCeEEEEEEc-CCCCCCCEEEEEeCCcEEEEEEEEec
Q 047819 8 WDDTPEFHVFKADL-SGFHKHDVKVEIEDGRVLCISGEKKI 47 (114)
Q Consensus 8 v~e~~~~~~i~~~l-PG~~~~di~v~~~~~~~L~I~g~~~~ 47 (114)
+..+++++.|.+.+ ||-+++.|.- +.++ .|.|+-..+.
T Consensus 4 ~~~~~~~~~l~i~V~P~A~~~~i~~-~~~~-~lkv~v~ApP 42 (95)
T PRK05090 4 VTWDGDGLVLRLYIQPKASRDQIVG-LHGD-ELKVAITAPP 42 (95)
T ss_pred eEEeCCeEEEEEEEeeCCCcceecc-ccCC-EEEEEEecCC
Confidence 56788999999988 9999888764 3455 7888866554
No 103
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=37.43 E-value=34 Score=19.35 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=18.0
Q ss_pred CCCCCEEEEEeCCcEEEEEEEEe
Q 047819 24 FHKHDVKVEIEDGRVLCISGEKK 46 (114)
Q Consensus 24 ~~~~di~v~~~~~~~L~I~g~~~ 46 (114)
|+.+.|.+....| .|.|+|+.=
T Consensus 23 f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETTE-EEEEEEEEE
T ss_pred ECCCEEEEEeCCE-EEEEECceE
Confidence 5788889999887 999998753
No 104
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=34.83 E-value=2e+02 Score=21.66 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCCCEEE--------EEeCCcEEEEEEEEec
Q 047819 14 FHVFKADLSGFHKHDVKV--------EIEDGRVLCISGEKKI 47 (114)
Q Consensus 14 ~~~i~~~lPG~~~~di~v--------~~~~~~~L~I~g~~~~ 47 (114)
.+..++.++|....++++ .+++| .|.|++.+..
T Consensus 16 ~W~~e~~~~g~gn~Efq~Yt~~~~N~~v~dG-~L~I~p~~~~ 56 (321)
T cd02179 16 KWTIEVRFPGEPDYEFVVYDDAPENLFVKDG-NLVIEPTLLE 56 (321)
T ss_pred cCeeeccCCCCCcCceEEecCCCCceEEeCC-eEEEEEeecc
Confidence 455556666654444433 35666 8999998753
No 105
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=34.70 E-value=82 Score=17.74 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=18.4
Q ss_pred CeEEEEEEcCCCCCCCE-EEEEeCCcEEE
Q 047819 13 EFHVFKADLSGFHKHDV-KVEIEDGRVLC 40 (114)
Q Consensus 13 ~~~~i~~~lPG~~~~di-~v~~~~~~~L~ 40 (114)
+.|.|.+..||+..... .+.+..+....
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~ 76 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTT 76 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEE
Confidence 56888888888877776 47777543433
No 106
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=34.29 E-value=1.6e+02 Score=20.47 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEeCCcEEEEEEEEecccc-----cCcccEEE---eeeeeeEEEEEEECCCC
Q 047819 23 GFHKHDVKVEIEDGRVLCISGEKKIEKE-----ERTDEGHC---LEVVVGKFSRRFQLLEN 75 (114)
Q Consensus 23 G~~~~di~v~~~~~~~L~I~g~~~~~~~-----~~~~~~~~---~e~~~~~f~r~~~lP~~ 75 (114)
..+++++. +++| .|+|++.+..... -..+...+ ....+|.|+-++++|..
T Consensus 34 ~~~~~nv~--v~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAY--VEDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeE--EECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 34556655 4577 8999988765321 11222222 23456889999999854
No 107
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=33.70 E-value=1.2e+02 Score=21.70 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=22.3
Q ss_pred EEEe-CCcEEEEEEEEecccccCcccEEEee---ee----eeEEEEEEECCC
Q 047819 31 VEIE-DGRVLCISGEKKIEKEERTDEGHCLE---VV----VGKFSRRFQLLE 74 (114)
Q Consensus 31 v~~~-~~~~L~I~g~~~~~~~~~~~~~~~~e---~~----~~~f~r~~~lP~ 74 (114)
+.++ +| .|+|++.+.....-..+...... .. ++.|+-+++||.
T Consensus 48 ~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~ 98 (259)
T cd02182 48 VQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD 98 (259)
T ss_pred EEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCC
Confidence 3455 66 89999987531111111111111 11 126888888885
No 108
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=33.57 E-value=1.1e+02 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=14.9
Q ss_pred CCCCEEEEEeCCcEEEEEEEEec
Q 047819 25 HKHDVKVEIEDGRVLCISGEKKI 47 (114)
Q Consensus 25 ~~~di~v~~~~~~~L~I~g~~~~ 47 (114)
.++++.+...++ .+.|+|..+.
T Consensus 129 ~~~~i~~d~~~~-~V~V~G~l~t 150 (187)
T PF05309_consen 129 YPKSIEVDPETL-TVFVTGTLKT 150 (187)
T ss_pred EEeEEEEecCCC-EEEEEEEEEE
Confidence 345666666665 8888888654
No 109
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=33.52 E-value=2.1e+02 Score=21.57 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCCCCCEEEE--------EeCCcEEEEEEEEec
Q 047819 13 EFHVFKADLSGFHKHDVKVE--------IEDGRVLCISGEKKI 47 (114)
Q Consensus 13 ~~~~i~~~lPG~~~~di~v~--------~~~~~~L~I~g~~~~ 47 (114)
+.+..++.++|....++++. +++| .|.|+++...
T Consensus 13 ~~W~~e~~~~g~gn~E~q~Yt~~~~n~~v~dG-~L~I~~~~~~ 54 (330)
T cd08024 13 SKWQHEVTAGGGGNGEFQWYTNDRSNSYVRDG-KLYIKPTLTA 54 (330)
T ss_pred ccceEEeccCCCCccceEEEeCCCcceEEeCC-eEEEEEEEeh
Confidence 34455556666654444443 5666 8999987543
No 110
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=33.24 E-value=31 Score=21.35 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=12.8
Q ss_pred eEEEeCCEEEEEEeee
Q 047819 82 TAHIANSTLTVTIRKK 97 (114)
Q Consensus 82 ~a~~~~GvL~I~ipK~ 97 (114)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6678899999998643
No 111
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=32.21 E-value=1.7e+02 Score=20.23 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccc
Q 047819 11 TPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKE 50 (114)
Q Consensus 11 ~~~~~~i~~~lPG~~~~di~v~~~~~~~L~I~g~~~~~~~ 50 (114)
.++.|+=++.||--..+-.++++.+| .|.|+-.+..+..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 34446668888865677889999987 9999988776543
No 112
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=30.76 E-value=1.8e+02 Score=21.71 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=27.2
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccc--CcccEE---EeeeeeeEEEEEEECCC
Q 047819 26 KHDVKVEIEDGRVLCISGEKKIEKEE--RTDEGH---CLEVVVGKFSRRFQLLE 74 (114)
Q Consensus 26 ~~di~v~~~~~~~L~I~g~~~~~~~~--~~~~~~---~~e~~~~~f~r~~~lP~ 74 (114)
++++ .+.+| .|+|++.+...... ..+... .....+|.|+-+++||.
T Consensus 40 ~~nv--~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 40 PDAV--TTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred CcCe--EecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 3444 45677 89999987532111 111111 12345789999999995
No 113
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=30.06 E-value=1.2e+02 Score=17.54 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=25.3
Q ss_pred cceeeEEeCCCeEEEEEEcC-CCCCCCEEEEE--eCCcEEEEE
Q 047819 3 PTRIDWDDTPEFHVFKADLS-GFHKHDVKVEI--EDGRVLCIS 42 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~~lP-G~~~~di~v~~--~~~~~L~I~ 42 (114)
+-|+.+.+++|.+++.-.|| +..--...+.+ .|++.|.+.
T Consensus 21 ekP~~v~~~~~~WiV~Gtl~~~~~GGv~~I~I~K~dgkVl~v~ 63 (66)
T PF15631_consen 21 EKPYRVTLDGDSWIVEGTLPPGMLGGVFYIEIRKKDGKVLNVT 63 (66)
T ss_pred cCCeEEecCCCeEEEEeecCCCccCCeEEEEEEccCCeEEEEE
Confidence 45678888899999998886 53333333333 355555554
No 114
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=29.88 E-value=1.4e+02 Score=18.48 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=29.6
Q ss_pred EeeeeeeEEEEEEECCCC-cccCceeEEEeCCEEEEEEe
Q 047819 58 CLEVVVGKFSRRFQLLEN-AMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 58 ~~e~~~~~f~r~~~lP~~-vd~~~i~a~~~~GvL~I~ip 95 (114)
..........-.|+||.. .....+...+...-|.|.+.
T Consensus 8 ~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~ 46 (102)
T cd06495 8 TWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVR 46 (102)
T ss_pred EEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEe
Confidence 334445567778999988 46888999999999999884
No 115
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=29.36 E-value=50 Score=19.86 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.1
Q ss_pred CCCCCCEEEEEeCCcEEEEEEEE
Q 047819 23 GFHKHDVKVEIEDGRVLCISGEK 45 (114)
Q Consensus 23 G~~~~di~v~~~~~~~L~I~g~~ 45 (114)
-|+.+.|.+....| .|.|+|+.
T Consensus 40 ~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 40 VFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred EECCCEEEEEcCce-EEEEEccc
Confidence 45888899999887 99999864
No 116
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=29.21 E-value=1.3e+02 Score=17.80 Aligned_cols=34 Identities=9% Similarity=-0.106 Sum_probs=27.1
Q ss_pred CCcceeeEEeCCCeEEEEEEcCCCCCCCEEEEEe
Q 047819 1 MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIE 34 (114)
Q Consensus 1 ~~~p~~dv~e~~~~~~i~~~lPG~~~~di~v~~~ 34 (114)
|..+.+.+.|.+....+.+..-|-....++|.+.
T Consensus 6 F~~~~~~V~E~~g~~~v~V~R~g~~~~~~~V~~~ 39 (90)
T smart00237 6 FEQPVYTVSESDGEVEVCVVRTGGARGTVVVPYR 39 (90)
T ss_pred ECCCeEEEEECCeEEEEEEEecCCCCcEEEEEEE
Confidence 4678889999998888888888877777777765
No 117
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=28.52 E-value=1.7e+02 Score=23.63 Aligned_cols=41 Identities=10% Similarity=0.269 Sum_probs=33.4
Q ss_pred cceeeEEeCCCeEEEEEEcCCC-CCCCEEEEEeCCcEEEEEE
Q 047819 3 PTRIDWDDTPEFHVFKADLSGF-HKHDVKVEIEDGRVLCISG 43 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~~lPG~-~~~di~v~~~~~~~L~I~g 43 (114)
.|.+-+..++|...+++.+|-. +..+|.|+...+...++.+
T Consensus 289 ~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~ 330 (596)
T KOG4379|consen 289 PPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL 330 (596)
T ss_pred CccceeeeccCcceEEEecccccccceEEEEecCceEEEEee
Confidence 5788999999999999999965 8899999988873444443
No 118
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=28.09 E-value=1.7e+02 Score=23.16 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCCCCEEEEEeC
Q 047819 14 FHVFKADLSGFHKHDVKVEIED 35 (114)
Q Consensus 14 ~~~i~~~lPG~~~~di~v~~~~ 35 (114)
.|.+.+.|||+++++--+-+..
T Consensus 116 ~~dvvl~l~g~dpdethiiisk 137 (512)
T COG4070 116 AFDVVLSLSGFDPDETHIIISK 137 (512)
T ss_pred cceEEEEccCCCCCcceEEEEe
Confidence 5888999999999987666654
No 119
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=27.24 E-value=77 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=15.6
Q ss_pred cCceeEEEeCCEEEEEEeeeC
Q 047819 78 VDRITAHIANSTLTVTIRKKD 98 (114)
Q Consensus 78 ~~~i~a~~~~GvL~I~ipK~~ 98 (114)
.+.-.+.++||++.|+|-|..
T Consensus 13 ~~~~~VvldNGiVqVtls~p~ 33 (203)
T PF06045_consen 13 VQGRQVVLDNGIVQVTLSKPG 33 (203)
T ss_pred EcCCEEEEECCEEEEEEcCCC
Confidence 344567889999999987654
No 120
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=27.12 E-value=1.3e+02 Score=18.78 Aligned_cols=20 Identities=15% Similarity=0.332 Sum_probs=16.7
Q ss_pred CCCCCCCEEEEEeCCcEEEEE
Q 047819 22 SGFHKHDVKVEIEDGRVLCIS 42 (114)
Q Consensus 22 PG~~~~di~v~~~~~~~L~I~ 42 (114)
-|++++++++.+-+| .+.++
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~ 37 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELR 37 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEE
Confidence 578999999999887 77776
No 121
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=26.90 E-value=60 Score=19.62 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=16.9
Q ss_pred CCCCCCEEEEEeCCcEEEEEEEE
Q 047819 23 GFHKHDVKVEIEDGRVLCISGEK 45 (114)
Q Consensus 23 G~~~~di~v~~~~~~~L~I~g~~ 45 (114)
-|+++.|.+....| .|.|+|+.
T Consensus 21 sfd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcE-EEEEEcce
Confidence 35778888888876 88888864
No 122
>PF11741 AMIN: AMIN domain; InterPro: IPR021731 This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localises to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localisation of periplasmic protein complexes []. ; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity
Probab=26.27 E-value=1.4e+02 Score=17.27 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=12.2
Q ss_pred eeEEeCCCeEEEEEEcCC
Q 047819 6 IDWDDTPEFHVFKADLSG 23 (114)
Q Consensus 6 ~dv~e~~~~~~i~~~lPG 23 (114)
+++...+++..|.+++++
T Consensus 1 i~v~~~~~~~~v~i~~~~ 18 (95)
T PF11741_consen 1 IRVNPTDDGTRVVIDTDS 18 (95)
T ss_pred CEEeeCCCcEEEEEEeCC
Confidence 356677777777777773
No 123
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=26.17 E-value=76 Score=18.39 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=11.0
Q ss_pred eCCEEEEEEeeeCCCCC
Q 047819 86 ANSTLTVTIRKKDIKKH 102 (114)
Q Consensus 86 ~~GvL~I~ipK~~~~~~ 102 (114)
.+|.|.+.+||+.-.++
T Consensus 9 ~~g~l~~YvpKKDLEE~ 25 (67)
T TIGR02934 9 RAGELSAYVPKKDLEEV 25 (67)
T ss_pred CCCCEEEEEECCcchhh
Confidence 35667778877765443
No 124
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=25.82 E-value=2.2e+02 Score=19.35 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=20.3
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEec
Q 047819 22 SGFHKHDVKVEIEDGRVLCISGEKKI 47 (114)
Q Consensus 22 PG~~~~di~v~~~~~~~L~I~g~~~~ 47 (114)
+.++-+++++..+++ .+.|+|+...
T Consensus 28 ~~~D~S~l~~~~d~~-~i~vsGn~t~ 52 (164)
T smart00675 28 EAFDISNLVVDMDPD-GLHISGNITV 52 (164)
T ss_pred hccchhheEEEEcCC-eEEEeeeEEE
Confidence 346778999999776 8999999775
No 125
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=25.38 E-value=74 Score=18.21 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=13.9
Q ss_pred CCCcccCceeEEEeCCEEEEEEe
Q 047819 73 LENAMVDRITAHIANSTLTVTIR 95 (114)
Q Consensus 73 P~~vd~~~i~a~~~~GvL~I~ip 95 (114)
|+.+-...--..+++|+|.|.+.
T Consensus 34 g~~l~~~~~~~~i~~g~L~i~v~ 56 (89)
T PF05258_consen 34 GPELAQHTRPVSIKDGTLVIEVD 56 (89)
T ss_pred CHHHHccEEEEEEECCEEEEEEC
Confidence 43333333344568999999864
No 126
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=24.93 E-value=1.2e+02 Score=18.20 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=14.2
Q ss_pred CcceeeEEeCCCeEEEEEEcCCC
Q 047819 2 IPTRIDWDDTPEFHVFKADLSGF 24 (114)
Q Consensus 2 ~~p~~dv~e~~~~~~i~~~lPG~ 24 (114)
..|.+.+...++.|.-++.||.-
T Consensus 20 ~~P~~~~~~~~~~~~c~v~LP~~ 42 (90)
T PF03368_consen 20 LKPEFEIEKIGSGFICTVILPIN 42 (90)
T ss_dssp SS-EEEEEE--G-EEEEEE--TT
T ss_pred CCceEEEEEcCCcEEEEEECCCC
Confidence 46888999999999999999953
No 127
>PF07122 VLPT: Variable length PCR target protein (VLPT); InterPro: IPR009805 This entry represents a 29 residue repeated sequence which seem to be specific to the Ehrlichia chaffeensis variable length PCR target (VLPT) protein. E. chaffeensis is a tick-transmitted rickettsial agent and is responsible for human monocytic ehrlichiosis (HME). The function of this family is unknown [].
Probab=24.33 E-value=24 Score=16.97 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=13.6
Q ss_pred EEEEEEcCCCCCCCEEEE
Q 047819 15 HVFKADLSGFHKHDVKVE 32 (114)
Q Consensus 15 ~~i~~~lPG~~~~di~v~ 32 (114)
=...++||+..++.+++.
T Consensus 12 ~ss~vELp~pskE~vQLe 29 (30)
T PF07122_consen 12 GSSSVELPSPSKEEVQLE 29 (30)
T ss_pred CccceecCCchHhhhccc
Confidence 346788999998887753
No 128
>PRK00647 hypothetical protein; Validated
Probab=23.72 E-value=1.6e+02 Score=18.21 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCeEEEEEEc-CCCCCCCEEEEEeCCcEEEEEEEEec
Q 047819 12 PEFHVFKADL-SGFHKHDVKVEIEDGRVLCISGEKKI 47 (114)
Q Consensus 12 ~~~~~i~~~l-PG~~~~di~v~~~~~~~L~I~g~~~~ 47 (114)
++.|.|.+.+ ||-+++.|. -+.++ .|.|+-..+.
T Consensus 3 ~~~~~l~V~V~P~Ak~~~I~-g~~~~-~Lkvrv~ApP 37 (96)
T PRK00647 3 EGFWILEVKVTPKARENKIV-GFEGG-ILKVRVTEVP 37 (96)
T ss_pred CCcEEEEEEEeeCCCcceec-cccCC-EEEEEEecCC
Confidence 4568999988 999999884 44555 8888866554
No 129
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=23.60 E-value=2.5e+02 Score=19.15 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=14.7
Q ss_pred CCCCEEEEEeCCcEEEEEEEEec
Q 047819 25 HKHDVKVEIEDGRVLCISGEKKI 47 (114)
Q Consensus 25 ~~~di~v~~~~~~~L~I~g~~~~ 47 (114)
.+.++.+...++ .+.|+|..+.
T Consensus 129 ~~~~i~v~~~~~-~V~V~G~l~~ 150 (181)
T TIGR02761 129 YPKSVEWNPQEG-TVKVRGHLKR 150 (181)
T ss_pred EeeeEEEccCCC-EEEEEEEEEE
Confidence 345666666665 8888887653
No 130
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=23.48 E-value=79 Score=18.78 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=15.2
Q ss_pred ceeEEEeCCEEEEEEeee
Q 047819 80 RITAHIANSTLTVTIRKK 97 (114)
Q Consensus 80 ~i~a~~~~GvL~I~ipK~ 97 (114)
.++|.|.+.++++++|..
T Consensus 2 ~vK~~~~~d~~r~~l~~~ 19 (82)
T cd06407 2 RVKATYGEEKIRFRLPPS 19 (82)
T ss_pred EEEEEeCCeEEEEEcCCC
Confidence 478999999999999854
No 131
>KOG4356 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=14 Score=27.77 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=46.0
Q ss_pred eCCCeEEEEEEcCCCCC-CCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEe--
Q 047819 10 DTPEFHVFKADLSGFHK-HDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA-- 86 (114)
Q Consensus 10 e~~~~~~i~~~lPG~~~-~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~-- 86 (114)
+..+.....++||++.. ..+++.+.++ .|.+.+.+. .|.-...+|.-++.....|.|.
T Consensus 237 e~p~~i~~e~~lp~~n~~~~~sl~v~e~-ri~i~~~~~------------------~y~l~~~~~~~~~~~~~~a~Fd~~ 297 (310)
T KOG4356|consen 237 EAPDEIEAEIDLPNYNSMQEFSLLVGED-RIVIETRKQ------------------GYRLNLNIPYIIDQDRAPALFDKT 297 (310)
T ss_pred cCcchhhhhhhcccchhhhccccccCCc-ceEeccCcc------------------ceeeccccccccCcccchhhHHHH
Confidence 34456677788888844 4555666555 676665432 2555567888899998898884
Q ss_pred CCEEEEEEeee
Q 047819 87 NSTLTVTIRKK 97 (114)
Q Consensus 87 ~GvL~I~ipK~ 97 (114)
-..|.|+||-.
T Consensus 298 ~~al~i~~P~~ 308 (310)
T KOG4356|consen 298 TKALHITIPVV 308 (310)
T ss_pred HHhhheecccc
Confidence 34788887753
No 132
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=22.89 E-value=72 Score=20.20 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.3
Q ss_pred eeEEEeCCEEEEEEeee
Q 047819 81 ITAHIANSTLTVTIRKK 97 (114)
Q Consensus 81 i~a~~~~GvL~I~ipK~ 97 (114)
+-+.+++|||+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 56677899999988755
No 133
>PF13014 KH_3: KH domain
Probab=22.84 E-value=1.2e+02 Score=15.17 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=10.4
Q ss_pred EEEEeeeCCCCCCCCceEEEEee
Q 047819 91 TVTIRKKDIKKHHGHSRSIKIIG 113 (114)
Q Consensus 91 ~I~ipK~~~~~~~~~~~~I~I~~ 113 (114)
.|.+|+...... ..+.|.|.|
T Consensus 23 ~I~i~~~~~~~~--~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPENEPGS--NERVVTITG 43 (43)
T ss_pred EEEECCccCCCC--CceEEEEEC
Confidence 466666222222 446666654
No 134
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=22.30 E-value=2.9e+02 Score=23.69 Aligned_cols=42 Identities=5% Similarity=-0.095 Sum_probs=26.9
Q ss_pred EeeeeeeEEEE-EEECCCC--cccCceeEEEeCCEEEEEEeeeCC
Q 047819 58 CLEVVVGKFSR-RFQLLEN--AMVDRITAHIANSTLTVTIRKKDI 99 (114)
Q Consensus 58 ~~e~~~~~f~r-~~~lP~~--vd~~~i~a~~~~GvL~I~ipK~~~ 99 (114)
..-+..|.|.- +=..|.. +|-..+.-+|++|+|++.+|-..+
T Consensus 723 v~vkg~G~lg~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~ 767 (777)
T PLN02711 723 IGVKGSGEMRVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSGS 767 (777)
T ss_pred EEEEeeeEEEEEecCCCeEEEECCEEeeeEecCCEEEEEecCCCc
Confidence 33344455531 1256755 455567777899999999998763
No 135
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=22.23 E-value=1.5e+02 Score=20.21 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=23.5
Q ss_pred eeEEEeCCEEEEEEeeeCCCCCCCCceEEEEeeC
Q 047819 81 ITAHIANSTLTVTIRKKDIKKHHGHSRSIKIIGI 114 (114)
Q Consensus 81 i~a~~~~GvL~I~ipK~~~~~~~~~~~~I~I~~~ 114 (114)
+...+.||.|.|.=-|.-.-.. ..+.|.|.||
T Consensus 100 Vv~VlpNGnL~I~G~k~i~vn~--e~~~i~lsGi 131 (179)
T PF02107_consen 100 VVEVLPNGNLVIEGEKQIRVNG--EEQYIRLSGI 131 (179)
T ss_pred EEEECCCCcEEEEEEEEEEECC--CEEEEEEEEE
Confidence 4445789999998887766554 5678888775
No 136
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=22.16 E-value=3.2e+02 Score=20.00 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=26.0
Q ss_pred EEEEeCCcEEEEEEEEecccc---------cCcccEEE------eeeeeeEEEEEEECCC
Q 047819 30 KVEIEDGRVLCISGEKKIEKE---------ERTDEGHC------LEVVVGKFSRRFQLLE 74 (114)
Q Consensus 30 ~v~~~~~~~L~I~g~~~~~~~---------~~~~~~~~------~e~~~~~f~r~~~lP~ 74 (114)
.+.+.+| .|+|++.+..... .....|.+ ....+|.|+-++++|.
T Consensus 45 Nv~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 4567787 8999998764211 11111211 1236788999999753
No 137
>PF14651 Lipocalin_7: Lipocalin / cytosolic fatty-acid binding protein family; PDB: 2F73_A 3B2L_A 3B2J_A 3STN_A 3STK_A 3STM_X 3VG6_A 3VG4_A 3VG5_A 3B2K_A ....
Probab=21.89 E-value=1.5e+02 Score=19.32 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=17.7
Q ss_pred cceeeEEeCCCeEEEEEEcCCC
Q 047819 3 PTRIDWDDTPEFHVFKADLSGF 24 (114)
Q Consensus 3 ~p~~dv~e~~~~~~i~~~lPG~ 24 (114)
.|.++|.+++|.|.+...-||-
T Consensus 36 k~v~Ei~q~Gd~ft~t~~~~gg 57 (128)
T PF14651_consen 36 KPVTEISQNGDDFTWTTTTPGG 57 (128)
T ss_dssp -EEEEEEEETTEEEEEEEETTT
T ss_pred CceEEEEEeCCeEEEEEEecCC
Confidence 4678999999999998888864
No 138
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=21.79 E-value=2.8e+02 Score=19.19 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=30.8
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEecccccCcccEEEeeeeeeEEEEEEECCCCcccCceeEEEeCCEEEEEE
Q 047819 22 SGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTI 94 (114)
Q Consensus 22 PG~~~~di~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~i 94 (114)
|=.-+++++++++++ .+.++|.+ |...+.| +..+ +.-..+|+.+.+..
T Consensus 8 ~i~~P~gV~V~i~~~-~v~vkGpk------------------GeL~~~~--~~~~----v~v~~~~~~~vv~~ 55 (178)
T COG0097 8 PIVIPAGVTVSIEGQ-VVTVKGPK------------------GELTREF--HDNV----VKVEVEDNILVVRP 55 (178)
T ss_pred cEecCCCeEEEEecc-EEEEECCC------------------cEEEEEe--cCcc----eEEEecCCEEEEee
Confidence 333488999999965 89999863 4455444 3222 46667777666653
No 139
>PRK14646 hypothetical protein; Provisional
Probab=21.49 E-value=77 Score=21.24 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=13.6
Q ss_pred CCeEEEEEEcCCCCCC
Q 047819 12 PEFHVFKADLSGFHKH 27 (114)
Q Consensus 12 ~~~~~i~~~lPG~~~~ 27 (114)
+++|.|++.-||+++.
T Consensus 73 ~~~Y~LEVSSPGldRp 88 (155)
T PRK14646 73 NCSYVLEISSQGVSDE 88 (155)
T ss_pred CCCeEEEEcCCCCCCc
Confidence 4789999999999764
No 140
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=21.18 E-value=1.6e+02 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCCCCCEEEEEeCCcEEE
Q 047819 12 PEFHVFKADLSGFHKHDVKVEIEDGRVLC 40 (114)
Q Consensus 12 ~~~~~i~~~lPG~~~~di~v~~~~~~~L~ 40 (114)
...|.|++..+|++...++|.+..+....
T Consensus 340 pG~ytl~vs~~GY~~~~~~v~V~~~~~~~ 368 (375)
T cd03863 340 PGTYKVTASARGYDPVTKTVEVDSKGAVQ 368 (375)
T ss_pred CeeEEEEEEEcCcccEEEEEEEcCCCcEE
Confidence 45688899999998888888887553433
No 141
>PF03041 Baculo_LEF-2: lef-2; InterPro: IPR004283 The late expression factor 2 (lef-2) protein from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) is required for expression of late genes. The lef-2 protein has been shown to be specifically required for expression from the vp39 and polh promoters [].; GO: 0019083 viral transcription
Probab=21.07 E-value=83 Score=21.45 Aligned_cols=45 Identities=13% Similarity=-0.028 Sum_probs=32.0
Q ss_pred CCcceee--EEeCCCeEEEEEEc-CCCCCCCEEEEEeCCcEEEEEEEE
Q 047819 1 MIPTRID--WDDTPEFHVFKADL-SGFHKHDVKVEIEDGRVLCISGEK 45 (114)
Q Consensus 1 ~~~p~~d--v~e~~~~~~i~~~l-PG~~~~di~v~~~~~~~L~I~g~~ 45 (114)
.|.|.+. -.+++..|.|.+++ +++.-+-.++-..+|..+.|+|.+
T Consensus 3 ~w~Ps~~~~~IDk~~~Y~V~~~d~~~~~lspyT~F~~gG~~v~vsG~r 50 (163)
T PF03041_consen 3 VWNPSIKRSSIDKNATYLVDPFDFDWLELSPYTVFEPGGLYVRVSGLR 50 (163)
T ss_pred ccCccccccccCCCCeEEEcHHHcCCCcCCCCceEeCCCEEEEEECcc
Confidence 3667543 33455568888865 667788888888888788888865
No 142
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.49 E-value=1.4e+02 Score=18.01 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=19.9
Q ss_pred ECCCCcccCceeEEEeCC--EEEEEEee
Q 047819 71 QLLENAMVDRITAHIANS--TLTVTIRK 96 (114)
Q Consensus 71 ~lP~~vd~~~i~a~~~~G--vL~I~ipK 96 (114)
.||..+|++++..+..+| ++-|.+-.
T Consensus 30 ~Lp~~~d~~Sl~V~~~g~~~i~~v~~~~ 57 (104)
T PF13600_consen 30 GLPPSLDPDSLRVSGEGGVTILSVRFRR 57 (104)
T ss_pred CCCcccCCCcEEEEecCCEEEEEEEEEE
Confidence 589999999999998886 44454443
No 143
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.37 E-value=8.4 Score=22.34 Aligned_cols=13 Identities=31% Similarity=0.194 Sum_probs=10.1
Q ss_pred ceeEEEeCCEEEE
Q 047819 80 RITAHIANSTLTV 92 (114)
Q Consensus 80 ~i~a~~~~GvL~I 92 (114)
-|.|.|+||+|.=
T Consensus 6 IIEaiYEnGVfKP 18 (67)
T COG2880 6 IIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHhcccccc
Confidence 3678899998863
No 144
>PRK14630 hypothetical protein; Provisional
Probab=20.08 E-value=93 Score=20.55 Aligned_cols=16 Identities=6% Similarity=0.140 Sum_probs=13.7
Q ss_pred CCeEEEEEEcCCCCCC
Q 047819 12 PEFHVFKADLSGFHKH 27 (114)
Q Consensus 12 ~~~~~i~~~lPG~~~~ 27 (114)
++.|.|++.-||+++.
T Consensus 70 ~~~Y~LEVSSPGldRp 85 (143)
T PRK14630 70 KYNFSLEISTPGINRK 85 (143)
T ss_pred CCCeEEEEeCCCCCCc
Confidence 5789999999999764
Done!