RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047819
(114 letters)
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
ScHsp26 is temperature-regulated, it switches from an
inactive to a chaperone-active form upon elevation in
temperature. It associates into large 24-mers storage
forms which upon heat shock disassociate into dimers.
These dimers initiate the interaction with non-native
substrate proteins and re-assemble into large globular
assemblies having one monomer of substrate bound per
dimer. This group also contains Arabidopsis thaliana
(Ath) Hsp15.7, a peroxisomal matrix protein which can
complement the morphological phenotype of S. cerevisiae
mutants deficient in Hsps26. AthHsp15.7 is minimally
expressed under normal conditions and is strongly
induced by heat and oxidative stress. Also belonging to
this group is wheat HSP16.9 which differs in quaternary
structure from the shell-type particles of ScHsp26, it
assembles as a dodecameric double disc, with each disc
organized as a trimer of dimers.
Length = 92
Score = 107 bits (269), Expect = 8e-32
Identities = 52/92 (56%), Positives = 67/92 (72%)
Query: 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVG 64
R+DW +TPE HVFKAD+ G K DVKVE+EDGRVL ISGE+K E+E++ D+ H +E G
Sbjct: 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60
Query: 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRK 96
+F RRF+L ENA D + A + N LTVT+ K
Sbjct: 61 RFVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 78.8 bits (195), Expect = 1e-20
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKF 66
D + + V K D+ GF ++KV++ED RVL EKEE D G E F
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKH---EKEEEDDHGLRSERSYRSF 57
Query: 67 SRRFQLLENAMVDRITAHIANSTLTVTIRKK 97
SR+F L ENA D++ A + + LTVT+ K
Sbjct: 58 SRKFVLPENADPDKVKASLKDGVLTVTVPKL 88
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 74.1 bits (183), Expect = 7e-19
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKF 66
D +T + +V +ADL GF K D+KVE+EDG VL ISGE++ E+EE + E G F
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEE-ENYLRRERSYGSF 58
Query: 67 SRRFQLLENAMVDRITAHIANSTLTVTIRK 96
SR F+L E+ D+I A + N LT+T+ K
Sbjct: 59 SRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of
human butyrate-induced transcript 1 (hB-ind1), NUD
(nuclear distribution) C, Melusin, and NAD(P)H
cytochrome b5 (NCB5) oxidoreductase (OR).
Length = 80
Score = 61.5 bits (150), Expect = 7e-14
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 8 WDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFS 67
W T + V DL G K D+KVE+ED L ISG+++ E+E E G+F
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNV-LTISGKREEEEER--------ERSYGEFE 51
Query: 68 RRFQLLENAMVDRITAHIANSTLTVTIRK 96
R F+L E+ ++ A + N L +T+ K
Sbjct: 52 RSFELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 59.7 bits (145), Expect = 1e-12
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 6 IDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGK 65
+D ++T + + A+L G K D+++ +E L I GE++ E+EE + E G+
Sbjct: 43 VDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGE 101
Query: 66 FSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKKHHGHSRSIK 110
F R F+L E + I A N LTVT+ K + ++ I+
Sbjct: 102 FERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing
an alpha crystallin domain (ACD) similar to
Lactobacillus plantarum (Lp) small heat shock proteins
(sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Transcription of the genes encoding Lp HSP
18.5, 18.55 and 19.3 is regulated by a variety of
stresses including heat, cold and ethanol. Early
growing L. plantarum cells contain elevated levels of
these mRNAs which rapidly fall of as the cells enter
stationary phase. Also belonging to this group is
Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis
(syn. Leuconostoc oenos) (Oo) HSP18. Transcription of
the gene encoding BbHSP20 is strongly induced following
heat or osmotic shock, and that of the gene encoding
OoHSP18 following heat, ethanol or acid shock. OoHSP18
is peripherally associated with the cytoplasmic
membrane.
Length = 93
Score = 54.4 bits (132), Expect = 4e-11
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 18 KADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCL--EVVVGKFSRRFQLLEN 75
+ADL GF K D+K++ +DG L IS ++ K+E+ +G+ + E G FSR F L N
Sbjct: 15 EADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSF-YLPN 72
Query: 76 AMVDRITAHIANSTLTVTIRK 96
+ I A N L +T+ K
Sbjct: 73 VDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 41.0 bits (97), Expect = 5e-06
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 9 DDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSR 68
DD +F V D+ GF ++KV++ D +++ + G + EER DE V +F+R
Sbjct: 4 DDDEKFQV-TLDVKGFKPEELKVKVSDNKLV-VEG----KHEEREDEHGY---VSREFTR 54
Query: 69 RFQLLENAMVDRITAHI-ANSTLTVTIRK 96
R+QL E D +T+ + ++ LT+ K
Sbjct: 55 RYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins
IbpA and IbpB, and similar proteins. IbpA and IbpB are
16 kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated
activity seen under heat shock conditions is retained
for an extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 35.6 bits (83), Expect = 7e-04
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 GFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRIT 82
GF + D+++E+E+ L ++G+K E+ E + H + F R F L ++ V
Sbjct: 21 GFSEDDLEIEVENN-QLTVTGKKADEENEEREYLH-RGIAKRAFERSFNLADHVKVKG-- 76
Query: 83 AHIANSTLTVTIRK 96
A + N LT+ + +
Sbjct: 77 AELENGLLTIDLER 90
>gnl|CDD|225191 COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid
transport and metabolism].
Length = 385
Score = 31.5 bits (72), Expect = 0.071
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 23 GFHKHDVKVEIEDGRVLCISGEKK---IEKEERTDEG-HCL-EVVVGKFSRRFQLLENAM 77
G +++ EDG+V+ IS EK +++ TDEG L E+ +G S +L N +
Sbjct: 253 GTLIEGIRLTFEDGKVVEISAEKGEEVLKRLLDTDEGARRLGELALGPNSPIARLFYNIL 312
Query: 78 VD-RI--TAHIA 86
D + T HIA
Sbjct: 313 FDEKASGTVHIA 324
>gnl|CDD|234755 PRK00419, PRK00419, DNA primase small subunit; Reviewed.
Length = 376
Score = 30.0 bits (68), Expect = 0.22
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 1 MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEK 45
+I T +D + +F K + F ++KVE + + G
Sbjct: 303 LIVTELDRKNLEDFDPLKDAVPPFRGREIKVEYTKPGEVELLGRS 347
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed.
Length = 180
Score = 26.7 bits (60), Expect = 2.2
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 28 DVKVEIEDGRVLCISGEKKIEKE-------ERTDEGHCLEVVVGKFSRRFQLLENAMVDR 80
V VEIE V + ++ ++ ++G +VV+ R + AMV
Sbjct: 15 GVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVEDG---KVVIETEFARKK--TKAMVGT 69
Query: 81 ITAHIANSTLTVT 93
+HI N VT
Sbjct: 70 FASHIKNMIKGVT 82
>gnl|CDD|227232 COG4895, COG4895, Uncharacterized conserved protein [Function
unknown].
Length = 63
Score = 25.6 bits (56), Expect = 2.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 22 SGFHKHDVKVEIEDGRV 38
S H H +KV + DG+V
Sbjct: 40 SPSHPHGIKVRLTDGQV 56
>gnl|CDD|107237 cd06482, ACD_HspB10, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB10, also
known as sperm outer dense fiber protein (ODFP), and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB10
occurs exclusively in the axoneme of sperm cells and
may have a cytoskeletal role.
Length = 87
Score = 25.6 bits (56), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 20 DLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTD 54
D+ GF VKV+++DG+V +S E+E R D
Sbjct: 15 DVCGFEPDQVKVKVKDGKV-QVSA----ERENRYD 44
>gnl|CDD|219716 pfam08074, CHDCT2, CHDCT2 (NUC038) domain. The CHDCT2 C-terminal
domain is found in PHD/RING finger and chromo
domain-associated CHD-like helicases.
Length = 174
Score = 26.0 bits (57), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 49 KEERTDEGHCLEVVVGKFSRRFQLLENAMV 78
K G+ LE+ +RRF+LLE A+V
Sbjct: 43 KSVGAKPGNFLEMKNKFLARRFKLLEQALV 72
>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
Length = 315
Score = 25.7 bits (57), Expect = 6.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 3 PTRIDWDDTPEFHVFKADLSGFHKHDV 29
P R+ +D F +A + G+ H V
Sbjct: 86 PVRLHVEDEEAFDPNRAYVFGYEPHSV 112
>gnl|CDD|150616 pfam09962, DUF2196, Uncharacterized conserved protein (DUF2196).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 62
Score = 24.5 bits (54), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 22 SGFHKHDVKVEIEDGRV 38
S H H +KV +EDG+V
Sbjct: 40 SPTHPHGIKVRLEDGQV 56
>gnl|CDD|152643 pfam12208, DUF3601, Domain of unknown function (DUF3601). This
domain family is found in bacteria, and is
approximately 80 amino acids in length.
Length = 79
Score = 24.8 bits (54), Expect = 7.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 34 EDGRVLCISGEKKIEKEERTDE 55
EDG L IS EK I R DE
Sbjct: 42 EDGYTLYISKEKTIRLSGRVDE 63
>gnl|CDD|163545 TIGR03833, TIGR03833, conserved hypothetical protein. A pair of
adjacent genes, ablAB (acetyl-beta-lysine biosynthesis)
encodes lysine 2,3-aminomutase and beta-lysine
acetyltransferase in methanogenic archaea. Homologous
pairs, possibly with identical function, occur in a
wide range of species, including Bacillus subtilis.
This model describes a conserved hypothetical protein,
small in size, with a phylogenetic distribution
moderately well correlated to that of the
acetyltransferase family. This protein family is also
described as DUF2196 and COG4895. The function is
unknown [Hypothetical proteins, Conserved].
Length = 62
Score = 24.1 bits (53), Expect = 8.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 22 SGFHKHDVKVEIEDGRV 38
S H H +KV +EDG+V
Sbjct: 39 SPTHPHGIKVRLEDGQV 55
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB7, also
known as cardiovascular small heat shock protein
(cvHsp), and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
HspB7 is a 25-kDa protein, preferentially expressed in
heart and skeletal muscle. It binds the cytoskeleton
protein alpha-filamin (also known as actin-binding
protein 280). The expression of HspB7 is increased
during rat muscle aging. Its expression is also
modulated in obesity implicating this protein in this
and related metabolic disorders. As the human gene
encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it
is a positional candidate for several dystrophies and
myopathies.
Length = 81
Score = 24.5 bits (53), Expect = 8.7
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 17 FKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENA 76
F D+S F D+ V + ++ ++ E+ +G V+ F+ + QL E+
Sbjct: 12 FAVDVSDFSPEDIIVTTSNNQI-------EVHAEKLASDG----TVMNTFTHKCQLPEDV 60
Query: 77 MVDRITAHI-ANSTLTVTIRK 96
+++ + + TLT+ R+
Sbjct: 61 DPTSVSSSLGEDGTLTIKARR 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.408
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,909,162
Number of extensions: 510152
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 36
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)