RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047819
(114 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 112 bits (283), Expect = 2e-33
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Query: 1 MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLE 60
R+DW +TPE HVFKADL G K +VKVE+EDG VL +SGE+ EKE++ D+ H +E
Sbjct: 41 FANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVE 100
Query: 61 VVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKKHHGHSRSIKIIG 113
GKF RRF+LLE+A V+ + A + N LTVT+ K ++KK ++I+I G
Sbjct: 101 RSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP--EVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 95.2 bits (238), Expect = 4e-27
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVG 64
R+D + V ADL G ++V+++ G +L I GE+K E T+ +E G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKK 97
F RRF L ++A D ITA N L + I K+
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKR 97
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 84.6 bits (210), Expect = 1e-22
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 1 MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLE 60
++ +D + + V ADL+GF+K +K + L I E++I + L
Sbjct: 22 LVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGV----KYLT 77
Query: 61 VVVGKFSRRFQLLENAMVD-RITAHIANSTLTVTIRKKDIKK 101
+ +L N D I+ N LT+ I
Sbjct: 78 QRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSV 119
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 84.8 bits (210), Expect = 2e-22
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEV-VV 63
I + + A L G +K D+ + L I ++ ++ E+
Sbjct: 58 PISIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEE 116
Query: 64 GKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKKHHGHSRSIKI 111
+ R +L + +A N L+V + K + + I I
Sbjct: 117 EEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSI----KKGINI 160
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 57.3 bits (138), Expect = 1e-11
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 6 IDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGK 65
+ + D+ F ++KV++ + + G + EER DE + +
Sbjct: 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHG----KHEERQDEHGF---ISRE 117
Query: 66 FSRRFQLLENAMVDRITAHI-ANSTLTVTIRKKDIKKHHGHSRSIKI 111
F R++++ + IT+ + ++ LTV +K + R+I I
Sbjct: 118 FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE---RTIPI 161
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 52.9 bits (127), Expect = 1e-10
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 10 DTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRR 69
P + D+ F ++ V++ + + EER DE + +F RR
Sbjct: 8 TDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHA----RHEERPDEHGF---IAREFHRR 59
Query: 70 FQLLENAMVDRITAHI-ANSTLTVTIRKKDIKK 101
++L +T+ + L++ +
Sbjct: 60 YRLPPGVDPAAVTSALSPEGVLSIQATPASAQA 92
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 52.1 bits (125), Expect = 2e-10
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 16 VFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLEN 75
D+ F ++KV++ V+ + G + EER DE + +F R++++ +
Sbjct: 9 SVNLDVKHFSPEELKVKVLG-DVIEVHG----KHEERQDEHGF---ISREFHRKYRIPAD 60
Query: 76 AMVDRITAHI-ANSTLTVTIRKKDIKK 101
IT+ + ++ LTV +K +
Sbjct: 61 VDPLTITSSMSSDGVLTVNGPRKQVSG 87
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 50.0 bits (120), Expect = 1e-09
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 10 DTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRR 69
T + D++ F ++ V+ +DG + I+G + R DE + F+R+
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGV-VEITG----KHAARQDEHGY---ISRCFTRK 55
Query: 70 FQLLENAMVDRITAHI-ANSTLTVTIRKK 97
+ L ++++ + TLTV
Sbjct: 56 YTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 49.1 bits (117), Expect = 4e-09
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 10 DTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRR 69
+ V D+ F D+ V++++ V I G + ER D+ + +F RR
Sbjct: 9 SDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHG----KHNERQDDHGY---ISREFHRR 60
Query: 70 FQLLENAMVDRITAHI-ANSTLTVTIRKKDIKKHHGHS-RSIKI 111
++L N ++ + A+ LT + K GHS R+I +
Sbjct: 61 YRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPV 104
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 50.2 bits (119), Expect = 1e-08
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 7 DWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKF 66
D + + H+ F DVKV + +V + G KEE+T+ +F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKV-YVHGVTG--KEEKTENAS--HSEHREF 282
Query: 67 SRRFQLLENAMVDRITAHIANSTLTVTI 94
+ F E + A I + + V
Sbjct: 283 YKAFVTPEVVDASKTQAEIVDGLMVVEA 310
Score = 45.2 bits (106), Expect = 8e-07
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 11/98 (11%)
Query: 9 DDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSR 68
D F V ++ F ++ ++ + L + +K + + R
Sbjct: 109 DGRLHFKV-YFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSES--------VGR 158
Query: 69 RFQLLENAMVDRITAHI-ANSTLTVTIRKKDIKKHHGH 105
L + + I A I + L + +
Sbjct: 159 SIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIK 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.004
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 25/122 (20%)
Query: 2 IPTRIDWDDTPEFHV------FKADLS----GFHKHD---VKVEIEDGRVLC-ISGEKKI 47
+PT + F F L GF D E+ G+ L +S +
Sbjct: 22 VPTAS-F-----FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-GKFLGYVS--SLV 72
Query: 48 EKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKKHHGHSR 107
E + L + + +F + LE + + A + T ++ K++ K++ +R
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 108 SI 109
+
Sbjct: 131 IM 132
Score = 26.6 bits (58), Expect = 2.3
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 26/76 (34%)
Query: 31 VEI----EDGRVLCISGEKKIEKEERTDEGHCLEVVVGKFSRRFQLLENAMVDRITAHIA 86
VEI + + +G+ + L+ V +L + +I
Sbjct: 1841 VEIVNYNVENQQYVAAGDLR-----------ALDTVT-------NVLNFIKLQKID---- 1878
Query: 87 NSTLTVTIRKKDIKKH 102
L ++ ++++ H
Sbjct: 1879 IIELQKSLSLEEVEGH 1894
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 26.4 bits (58), Expect = 1.3
Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVG 64
+ DW T V + K+DV VE EK++ + G
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFS---------EKELSALVKLPSGED------ 55
Query: 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKK 101
++ + +LL + ++ T + ++ + + ++K + +
Sbjct: 56 -YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVR 91
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A
{Staphylococcus aureus subsp} SCOP: e.60.1.1
Length = 418
Score = 27.1 bits (59), Expect = 1.4
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 21 LSGFHKHDVKVEIEDGRV---LCISGEKKIEKEERTDEGHC 58
+G K+ +DG + GE ++ TDEG
Sbjct: 278 YNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSR 318
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Length = 343
Score = 26.5 bits (59), Expect = 1.9
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 61 VVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKK 101
+ + +L +RI + L + D++K
Sbjct: 257 RMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKILDLQK 297
>2jmr_A FIMF; protein, cell adhesion; NMR {Escherichia coli}
Length = 179
Score = 26.3 bits (58), Expect = 2.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 79 DRITAHIANSTLTVTIRKKDIKKHHGHSRSIKIIGI 114
+TA N+T T T+ +D HH H ++ I I
Sbjct: 137 VPVTAGHINATATFTLEYQDNHHHHHHKQADSTITI 172
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte
tuberculosis, nicotinamide adenine dinucleotide
(NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis}
PDB: 3qbd_A
Length = 368
Score = 25.3 bits (56), Expect = 4.9
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 61 VVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDI 99
V + +R L++A R +++ L V+ +
Sbjct: 280 VFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDPDAL 318
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus
thermophilus} SCOP: e.60.1.1
Length = 408
Score = 25.5 bits (55), Expect = 5.0
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 21 LSGFHKHDVKVEIEDGRV---LCISGEKKIEKEERTDEGHC 58
L G + E G GE+ + + TDEG
Sbjct: 272 LGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGAR 312
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 25.0 bits (55), Expect = 6.0
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 61 VVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIRKK 97
+ K + R L+ V + I K
Sbjct: 271 IYAAKIANRMNLMPEHDVSAHYWLLNKIGALQDIPLK 307
>1lj8_A Mannitol dehydrogenase; oxidoreductase, NAD, long-chain
dehydrogenase; HET: NAD; 1.70A {Pseudomonas fluorescens}
SCOP: a.100.1.9 c.2.1.6 PDB: 1m2w_A*
Length = 493
Score = 24.9 bits (55), Expect = 6.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 75 NAMVDRIT 82
NAMVDRIT
Sbjct: 226 NAMVDRIT 233
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex,
pteridine tetrahydrobiopterin, structural genomics,
NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP:
d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Length = 220
Score = 25.0 bits (55), Expect = 7.3
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 62 VVGKFSRRFQLLENAMVDRITAHIANS 88
+V F+RR Q+ E R+ IA +
Sbjct: 138 IVDMFARRLQVQE-----RLAVQIAEA 159
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex,
hydrolase/protein binding complex; HET: PHE; 2.70A
{Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A*
1fb1_A
Length = 230
Score = 24.6 bits (54), Expect = 7.5
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 62 VVGKFSRRFQLLENAMVDRITAHIANS 88
+V +SRR Q+ E R+T IA +
Sbjct: 151 IVEIYSRRLQVQE-----RLTKQIAVA 172
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
acid biosynthesis, DHQS, O form J, domain movement,
cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Length = 393
Score = 25.0 bits (55), Expect = 7.6
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 61 VVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKK 101
V + +R +L+ V RI +A L +++ I+K
Sbjct: 296 VKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRK 336
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 24.0 bits (52), Expect = 7.6
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 5 RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRV 38
R ++ PE V G K +V ++ + +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.408
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,908,210
Number of extensions: 106765
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 34
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)