RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 047819
         (114 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 77.9 bits (191), Expect = 3e-20
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 2/113 (1%)

Query: 1   MIPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLE 60
               R+DW +TPE HVFKADL G  K +VKVE+EDG VL +SGE+  EKE++ D+ H +E
Sbjct: 40  FANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVE 99

Query: 61  VVVGKFSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKKHHGHSRSIKIIG 113
              GKF RRF+LLE+A V+ + A + N  LTVT+ K ++KK     ++I+I G
Sbjct: 100 RSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP--EVKAIQISG 150


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 53.1 bits (127), Expect = 5e-11
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 6   IDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVGK 65
           I   +  +     A L G +K D+ +      +   +    +   E     +       +
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 66  FSRRFQLLENAMVDRITAHIANSTLTVTIRKKDIKKHHGHSRSIKI 111
             R  +L      +  +A   N  L+V + K +        + I I
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSI----KKGINI 114


>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 413

 Score = 30.0 bits (67), Expect = 0.051
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 17  FKADLSGFHKHDVKVEIEDGRVL---CISGEKKIEKEERTDEG------HCLEVVVGKFS 67
                +G      K+  +DG ++      GE  ++    TDEG        L       S
Sbjct: 269 LPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPIS 328

Query: 68  RRFQLLENAMVD-RITAHIA 86
            R  +  N + D     H+A
Sbjct: 329 NRNTIFYNTLFDENAACHLA 348


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 26.8 bits (59), Expect = 0.32
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 16/94 (17%)

Query: 5  RIDWDDTPEFHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHCLEVVVG 64
          + DW  T    V    +    K+DV VE  +  +  +           + E + L++   
Sbjct: 4  KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLP-------SGEDYNLKL--- 53

Query: 65 KFSRRFQLLENAMVDRITAHIANSTLTVTIRKKD 98
                +LL   + ++ T  + ++ + + ++K +
Sbjct: 54 ------ELLHPIIPEQSTFKVLSTKIEIKLKKPE 81


>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 346

 Score = 25.0 bits (54), Expect = 2.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 2   IPTRIDWDDTPEFHVFKADLSGFHKHDVKVEIE 34
                +  D   F+ FK  +  F K +VKVE +
Sbjct: 306 KYVGTNERDVMRFNPFKHAVPKFRKEEVKVEYK 338


>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 24.1 bits (52), Expect = 3.0
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 21 LSGFHKHDVKVEIEDGRVL--CISGEKKIE 48
          + G H   V    EDG VL  C +  K I 
Sbjct: 3  IKGNHLVKVYDYQEDGSVLLTCDAEAKNIT 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0481    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,219
Number of extensions: 20542
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 15
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)