BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047826
         (746 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MFH|A Chain A, Dna Polymerase Eta In Complex With Undamaged Dna
 pdb|3MFI|A Chain A, Dna Polymerase Eta In Complex With A Cis-Syn Thymidine
           Dimer
 pdb|3OHA|A Chain A, Yeast Dna Polymerase Eta Inserting Dctp Opposite An 8oxog
           Lesion
 pdb|3OHB|A Chain A, Yeast Dna Polymerase Eta Extending From An 8-Oxog Lesion
          Length = 520

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 600 DSLSNVAMLFIGGNDD-REALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETI---LDS 655
           D+LSN+   FIGGN D    L      ++  K    V  F  E  D   DW+ +   L S
Sbjct: 192 DALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDV--FNPEGRDLITDWDDVILALGS 249

Query: 656 EVLRGVKNS 664
           +V +G+++S
Sbjct: 250 QVCKGIRDS 258


>pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
           With 1,2- D(gpg)-cisplatin Containing Dna
 pdb|2R8J|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
           With 1,2- D(gpg)-cisplatin Containing Dna
 pdb|2R8K|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
           With 1,2- D(gpg)-cisplatin Containing Dna
 pdb|2R8K|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
           With 1,2- D(gpg)-cisplatin Containing Dna
          Length = 554

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 600 DSLSNVAMLFIGGNDD-REALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETI---LDS 655
           D+LSN+   FIGGN D    L      ++  K    V  F  E  D   DW+ +   L S
Sbjct: 208 DALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDV--FNPEGRDLITDWDDVILALGS 265

Query: 656 EVLRGVKNS 664
           +V +G+++S
Sbjct: 266 QVCKGIRDS 274


>pdb|2WTF|A Chain A, Dna Polymerase Eta In Complex With The
           Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
 pdb|2WTF|B Chain B, Dna Polymerase Eta In Complex With The
           Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
 pdb|2XGP|A Chain A, Yeast Dna Polymerase Eta In Complex With C8-2-
           Acetylaminofluorene Containing Dna
 pdb|2XGP|B Chain B, Yeast Dna Polymerase Eta In Complex With C8-2-
           Acetylaminofluorene Containing Dna
 pdb|2XGQ|A Chain A, Structure Of Yeast Dna Polymerase Eta In Complex With
           C8-N- Acetyl-2-Aminoanthracene Containing Dna
 pdb|2XGQ|B Chain B, Structure Of Yeast Dna Polymerase Eta In Complex With
           C8-N- Acetyl-2-Aminoanthracene Containing Dna
          Length = 536

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 600 DSLSNVAMLFIGGNDD-REALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETI---LDS 655
           D+LSN+   FIGGN D    L      ++  K    V  F  E  D   DW+ +   L S
Sbjct: 208 DALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDV--FNPEGRDLITDWDDVILALGS 265

Query: 656 EVLRGVKNS 664
           +V +G+++S
Sbjct: 266 QVCKGIRDS 274


>pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta
 pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta
          Length = 513

 Score = 30.0 bits (66), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 600 DSLSNVAMLFIGGNDD-REALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETI---LDS 655
           D+LSN+   FIGGN D    L      ++  K    V  F  E  D   DW+ +   L S
Sbjct: 185 DALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDV--FNPEGRDLITDWDDVILALGS 242

Query: 656 EVLRGVKNS 664
           +V +G+++S
Sbjct: 243 QVCKGIRDS 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,601,008
Number of Sequences: 62578
Number of extensions: 816885
Number of successful extensions: 2077
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2077
Number of HSP's gapped (non-prelim): 4
length of query: 746
length of database: 14,973,337
effective HSP length: 106
effective length of query: 640
effective length of database: 8,340,069
effective search space: 5337644160
effective search space used: 5337644160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)