Query 047826
Match_columns 746
No_of_seqs 238 out of 1843
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:30:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 9E-145 2E-149 1284.3 75.7 722 4-744 18-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 1E-118 2E-123 1045.6 52.5 717 11-745 4-767 (769)
3 PRK10669 putative cation:proto 100.0 2E-44 4.4E-49 416.3 38.6 354 38-408 7-389 (558)
4 PRK03562 glutathione-regulated 100.0 3.5E-44 7.6E-49 415.7 39.0 355 36-408 4-380 (621)
5 PRK03659 glutathione-regulated 100.0 5.1E-43 1.1E-47 405.5 39.1 355 37-409 5-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 2.6E-42 5.7E-47 379.7 37.8 361 35-410 4-387 (397)
7 PRK05326 potassium/proton anti 100.0 2.6E-36 5.7E-41 348.6 32.0 364 34-409 3-389 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.1E-32 2.4E-37 290.9 25.4 250 47-310 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 3.8E-36 8.2E-41 332.7 -3.1 351 44-407 3-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 8.5E-31 1.8E-35 261.2 28.0 348 41-405 10-386 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 1.7E-22 3.8E-27 231.3 34.0 333 37-379 13-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 3.7E-22 8.1E-27 227.9 31.2 348 44-407 5-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 4.9E-19 1.1E-23 196.9 33.1 359 37-408 6-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.8 1.3E-19 2.8E-24 190.0 23.2 361 33-407 3-385 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.8 2.3E-17 4.9E-22 188.6 30.7 347 49-408 21-417 (559)
16 PRK11175 universal stress prot 99.8 1.2E-17 2.7E-22 179.1 18.5 272 430-741 4-299 (305)
17 PRK14853 nhaA pH-dependent sod 99.7 5.7E-15 1.2E-19 160.2 29.7 290 98-409 64-397 (423)
18 TIGR00773 NhaA Na+/H+ antiport 99.4 8.3E-12 1.8E-16 133.2 22.1 256 98-376 54-344 (373)
19 cd01988 Na_H_Antiporter_C The 99.4 8.6E-13 1.9E-17 122.8 11.6 131 431-581 1-131 (132)
20 KOG4505 Na+/H+ antiporter [Ino 99.4 2.1E-11 4.6E-16 124.5 20.5 322 43-375 20-382 (467)
21 KOG1965 Sodium/hydrogen exchan 99.2 2.2E-10 4.7E-15 126.8 17.2 359 39-407 37-454 (575)
22 PRK14856 nhaA pH-dependent sod 99.2 1.4E-09 3E-14 118.1 21.3 286 97-406 69-430 (438)
23 PRK09560 nhaA pH-dependent sod 99.2 3.6E-09 7.8E-14 113.3 22.3 283 100-405 63-383 (389)
24 PRK15456 universal stress prot 99.1 3.2E-10 7E-15 107.4 10.2 136 430-581 3-141 (142)
25 PRK15005 universal stress prot 99.1 4.4E-10 9.6E-15 106.5 11.0 138 430-581 3-143 (144)
26 PRK09561 nhaA pH-dependent sod 99.1 9.4E-09 2E-13 109.9 21.3 255 99-376 62-351 (388)
27 PRK14855 nhaA pH-dependent sod 99.1 2.5E-08 5.4E-13 108.0 23.5 278 100-404 67-411 (423)
28 cd01989 STK_N The N-terminal d 99.1 9.5E-10 2.1E-14 104.5 10.7 140 431-583 1-145 (146)
29 PRK14854 nhaA pH-dependent sod 99.0 3.2E-08 7E-13 105.5 22.4 283 100-404 60-376 (383)
30 cd01987 USP_OKCHK USP domain i 99.0 2.2E-09 4.8E-14 99.0 9.4 122 431-581 1-123 (124)
31 PRK15118 universal stress glob 98.9 3.1E-09 6.8E-14 100.8 9.4 135 430-582 4-138 (144)
32 PRK09982 universal stress prot 98.9 2.3E-09 5E-14 101.7 8.3 134 430-581 4-137 (142)
33 PF06965 Na_H_antiport_1: Na+/ 98.9 2.1E-09 4.6E-14 114.8 7.4 265 97-384 56-359 (378)
34 PF00582 Usp: Universal stress 98.9 2.4E-09 5.2E-14 99.4 5.7 134 430-581 3-139 (140)
35 COG3004 NhaA Na+/H+ antiporter 98.9 3.9E-07 8.4E-12 93.7 21.8 275 106-405 72-384 (390)
36 PRK10116 universal stress prot 98.8 3.7E-08 8.1E-13 93.1 9.8 137 430-584 4-140 (142)
37 PRK11175 universal stress prot 98.7 5.1E-08 1.1E-12 104.7 9.7 143 429-585 152-302 (305)
38 cd00293 USP_Like Usp: Universa 98.6 1.2E-07 2.7E-12 86.8 9.5 129 431-580 1-129 (130)
39 cd01989 STK_N The N-terminal d 98.5 1.1E-06 2.4E-11 83.3 12.3 124 604-742 1-145 (146)
40 cd01988 Na_H_Antiporter_C The 98.5 1.7E-06 3.6E-11 80.2 12.0 123 604-741 1-132 (132)
41 PRK15005 universal stress prot 98.4 3.1E-06 6.8E-11 80.0 11.1 123 602-741 2-144 (144)
42 PRK09982 universal stress prot 98.4 1.4E-06 3.1E-11 82.4 8.7 121 602-741 3-138 (142)
43 cd01987 USP_OKCHK USP domain i 98.3 1.8E-06 4E-11 79.4 8.5 122 604-740 1-123 (124)
44 PF00582 Usp: Universal stress 98.2 5.3E-06 1.1E-10 76.7 9.0 125 602-741 2-140 (140)
45 PRK15118 universal stress glob 98.2 5E-06 1.1E-10 78.7 8.8 124 602-743 3-140 (144)
46 COG0589 UspA Universal stress 98.2 1.6E-05 3.5E-10 75.3 11.7 141 429-582 5-151 (154)
47 cd00293 USP_Like Usp: Universa 98.2 2E-05 4.3E-10 72.0 11.3 122 604-740 1-130 (130)
48 PRK10116 universal stress prot 98.1 8.5E-06 1.8E-10 76.9 8.8 123 602-741 3-138 (142)
49 PRK15456 universal stress prot 98.1 2.8E-05 6E-10 73.5 12.1 122 602-741 2-142 (142)
50 PRK12460 2-keto-3-deoxyglucona 98.1 0.00024 5.2E-09 74.5 19.0 250 105-411 51-308 (312)
51 PF03812 KdgT: 2-keto-3-deoxyg 97.7 0.0012 2.7E-08 68.9 16.6 246 105-409 51-312 (314)
52 PF05684 DUF819: Protein of un 97.5 0.097 2.1E-06 57.7 28.6 284 60-376 24-346 (378)
53 TIGR00793 kdgT 2-keto-3-deoxyg 97.3 0.0041 9E-08 64.6 13.9 250 105-409 51-312 (314)
54 KOG1966 Sodium/hydrogen exchan 97.3 7.9E-05 1.7E-09 83.1 1.4 347 49-407 54-448 (670)
55 PRK12652 putative monovalent c 97.1 0.0016 3.5E-08 70.8 8.8 110 430-549 6-124 (357)
56 TIGR00841 bass bile acid trans 97.0 0.19 4.1E-06 53.5 23.1 99 103-208 12-116 (286)
57 PRK12652 putative monovalent c 97.0 0.007 1.5E-07 65.9 12.3 99 601-701 4-124 (357)
58 COG0385 Predicted Na+-dependen 97.0 0.23 4.9E-06 52.9 23.0 259 97-408 36-306 (319)
59 TIGR00832 acr3 arsenical-resis 96.8 0.41 8.8E-06 52.0 23.8 99 102-207 46-151 (328)
60 COG3180 AbrB Putative ammonia 96.8 0.8 1.7E-05 49.3 25.1 322 39-409 8-349 (352)
61 PF03616 Glt_symporter: Sodium 96.7 0.38 8.3E-06 52.9 23.6 291 38-361 8-345 (368)
62 TIGR00698 conserved hypothetic 96.7 0.79 1.7E-05 49.6 25.2 137 56-206 26-169 (335)
63 PF03601 Cons_hypoth698: Conse 96.6 0.3 6.5E-06 52.2 21.0 238 58-317 23-297 (305)
64 PRK05274 2-keto-3-deoxyglucona 96.5 0.073 1.6E-06 57.3 15.6 248 107-411 55-316 (326)
65 COG0798 ACR3 Arsenite efflux p 96.5 0.68 1.5E-05 49.3 22.2 262 63-363 19-288 (342)
66 COG0589 UspA Universal stress 96.4 0.022 4.7E-07 53.6 10.1 127 602-743 5-153 (154)
67 PF03390 2HCT: 2-hydroxycarbox 96.4 0.72 1.6E-05 50.9 22.7 249 114-381 109-394 (414)
68 PF13593 DUF4137: SBF-like CPA 96.2 0.6 1.3E-05 50.3 20.7 266 98-406 30-311 (313)
69 TIGR00930 2a30 K-Cl cotranspor 96.0 5.4 0.00012 49.6 30.2 109 424-554 570-683 (953)
70 TIGR00210 gltS sodium--glutama 96.0 2.5 5.5E-05 46.9 24.7 294 38-360 8-342 (398)
71 COG0786 GltS Na+/glutamate sym 96.0 0.79 1.7E-05 49.7 19.8 293 37-355 9-341 (404)
72 PRK10490 sensor protein KdpD; 95.8 0.033 7.2E-07 68.7 10.1 124 428-582 249-373 (895)
73 COG3493 CitS Na+/citrate sympo 95.1 1.4 3E-05 47.4 17.3 86 294-382 326-414 (438)
74 PRK03562 glutathione-regulated 94.3 1 2.2E-05 53.4 16.1 104 50-166 229-335 (621)
75 PF06826 Asp-Al_Ex: Predicted 94.2 0.24 5.3E-06 48.1 8.8 112 57-178 19-136 (169)
76 PRK03818 putative transporter; 94.2 0.27 5.8E-06 57.2 10.8 130 39-179 8-143 (552)
77 TIGR00783 ccs citrate carrier 94.1 2 4.3E-05 46.5 16.2 249 114-381 40-327 (347)
78 PF03616 Glt_symporter: Sodium 94.1 0.71 1.5E-05 50.9 13.3 118 293-410 65-186 (368)
79 PRK03659 glutathione-regulated 94.0 1.3 2.9E-05 52.2 16.2 68 51-128 227-294 (601)
80 PF03956 DUF340: Membrane prot 93.8 0.23 5E-06 49.3 8.0 124 65-207 2-133 (191)
81 TIGR00932 2a37 transporter, mo 93.6 2.1 4.6E-05 45.0 15.5 131 261-398 15-147 (273)
82 PF03601 Cons_hypoth698: Conse 93.4 1.1 2.3E-05 48.0 12.7 146 259-409 23-172 (305)
83 PRK10669 putative cation:proto 92.8 5.5 0.00012 46.7 18.6 117 261-384 29-146 (558)
84 PRK05326 potassium/proton anti 92.7 2.3 5E-05 49.8 15.3 102 261-366 29-133 (562)
85 COG2855 Predicted membrane pro 92.3 0.84 1.8E-05 48.7 9.8 132 258-395 33-164 (334)
86 COG2205 KdpD Osmosensitive K+ 92.2 0.6 1.3E-05 55.0 9.4 127 427-582 246-373 (890)
87 PF01758 SBF: Sodium Bile acid 92.2 0.94 2E-05 44.9 9.7 102 103-210 2-109 (187)
88 cd01984 AANH_like Adenine nucl 91.9 0.39 8.4E-06 40.8 5.8 49 525-579 35-84 (86)
89 PRK10490 sensor protein KdpD; 91.5 0.57 1.2E-05 58.0 8.8 122 602-740 250-372 (895)
90 TIGR03802 Asp_Ala_antiprt aspa 91.0 0.94 2E-05 52.9 9.5 113 58-179 412-531 (562)
91 PLN03159 cation/H(+) antiporte 90.5 4.6 9.9E-05 49.6 15.1 43 426-470 627-669 (832)
92 COG0475 KefB Kef-type K+ trans 90.1 6.7 0.00015 43.8 14.9 79 43-130 225-304 (397)
93 COG2855 Predicted membrane pro 89.9 32 0.00068 37.1 25.4 100 55-166 31-133 (334)
94 PRK04972 putative transporter; 89.5 0.73 1.6E-05 53.7 6.9 116 44-177 19-140 (558)
95 COG0786 GltS Na+/glutamate sym 89.4 3.4 7.3E-05 45.1 11.2 122 288-410 62-187 (404)
96 PF05145 AmoA: Putative ammoni 89.4 35 0.00076 36.9 23.1 103 300-408 212-315 (318)
97 TIGR03802 Asp_Ala_antiprt aspa 89.1 0.81 1.8E-05 53.4 6.9 109 48-175 17-136 (562)
98 TIGR00698 conserved hypothetic 89.1 6.8 0.00015 42.5 13.4 142 259-406 28-175 (335)
99 TIGR00210 gltS sodium--glutama 87.7 8.4 0.00018 42.9 13.4 159 40-207 222-392 (398)
100 TIGR01625 YidE_YbjL_dupl AspT/ 86.6 3.1 6.8E-05 39.8 8.1 111 61-179 21-138 (154)
101 TIGR03082 Gneg_AbrB_dup membra 86.3 16 0.00035 35.0 12.9 106 263-375 22-127 (156)
102 PF03956 DUF340: Membrane prot 84.8 8.4 0.00018 38.3 10.4 102 266-372 2-106 (191)
103 TIGR02432 lysidine_TilS_N tRNA 83.2 5.8 0.00012 39.1 8.6 38 604-641 1-38 (189)
104 COG2205 KdpD Osmosensitive K+ 82.4 4.9 0.00011 47.8 8.6 113 602-729 248-363 (890)
105 TIGR03136 malonate_biotin Na+- 82.1 2.8 6.1E-05 45.1 6.0 113 291-412 101-216 (399)
106 COG2985 Predicted permease [Ge 82.1 2.4 5.1E-05 47.3 5.6 77 102-181 62-146 (544)
107 PF03977 OAD_beta: Na+-transpo 82.0 3.4 7.3E-05 44.0 6.5 110 292-412 66-179 (360)
108 TIGR00946 2a69 he Auxin Efflux 81.7 16 0.00034 39.5 12.0 130 59-206 180-314 (321)
109 PRK04972 putative transporter; 81.1 5.4 0.00012 46.6 8.6 128 43-178 387-525 (558)
110 TIGR00831 a_cpa1 Na+/H+ antipo 79.8 15 0.00032 42.8 11.6 102 261-368 21-124 (525)
111 TIGR00844 c_cpa1 na(+)/h(+) an 79.8 41 0.00089 40.6 15.2 71 293-366 74-146 (810)
112 PF01171 ATP_bind_3: PP-loop f 77.7 12 0.00026 36.7 8.8 38 604-641 1-38 (182)
113 TIGR03082 Gneg_AbrB_dup membra 76.8 19 0.00041 34.5 9.5 72 45-128 3-76 (156)
114 TIGR00808 malonate_madM malona 76.0 13 0.00029 36.7 8.0 108 37-153 16-131 (254)
115 KOG2310 DNA repair exonuclease 76.0 5.2 0.00011 45.1 6.0 81 527-615 41-131 (646)
116 cd01984 AANH_like Adenine nucl 75.9 6 0.00013 33.3 5.3 34 605-639 1-34 (86)
117 PF03547 Mem_trans: Membrane t 74.5 17 0.00037 40.1 9.9 108 265-376 9-119 (385)
118 PRK05253 sulfate adenylyltrans 74.2 9.8 0.00021 40.7 7.4 42 603-644 28-69 (301)
119 PRK15475 oxaloacetate decarbox 74.1 3.4 7.4E-05 44.4 3.8 114 291-412 130-250 (433)
120 COG1346 LrgB Putative effector 73.8 1.1E+02 0.0024 31.2 15.5 111 283-407 62-172 (230)
121 PF05145 AmoA: Putative ammoni 73.7 32 0.00069 37.2 11.3 134 265-408 2-136 (318)
122 PRK15476 oxaloacetate decarbox 73.6 3.5 7.6E-05 44.3 3.8 114 291-412 130-250 (433)
123 PRK15477 oxaloacetate decarbox 73.6 3.5 7.6E-05 44.3 3.8 114 291-412 130-250 (433)
124 cd01992 PP-ATPase N-terminal d 72.4 14 0.00031 36.0 7.7 38 604-641 1-38 (185)
125 TIGR02039 CysD sulfate adenyly 71.9 13 0.00027 39.7 7.5 41 604-644 21-61 (294)
126 COG3329 Predicted permease [Ge 71.1 57 0.0012 34.5 11.6 123 262-391 16-141 (372)
127 cd01993 Alpha_ANH_like_II This 69.5 35 0.00075 33.1 9.8 38 604-641 1-40 (185)
128 PRK12460 2-keto-3-deoxyglucona 67.3 21 0.00045 38.1 7.9 67 64-142 169-235 (312)
129 PRK03818 putative transporter; 64.0 12 0.00027 43.5 6.1 105 64-176 403-514 (552)
130 COG1646 Predicted phosphate-bi 63.2 38 0.00082 34.5 8.4 84 514-615 16-100 (240)
131 TIGR01625 YidE_YbjL_dupl AspT/ 62.3 29 0.00063 33.2 7.2 95 261-358 20-120 (154)
132 PRK09903 putative transporter 62.2 86 0.0019 33.7 11.8 105 59-178 171-279 (314)
133 PF05684 DUF819: Protein of un 60.7 2E+02 0.0044 31.8 14.5 125 261-391 24-152 (378)
134 PRK06806 fructose-bisphosphate 60.3 2E+02 0.0043 30.5 13.8 115 512-638 18-138 (281)
135 COG2431 Predicted membrane pro 60.3 2.3E+02 0.0049 29.8 16.5 46 327-372 168-213 (297)
136 PRK12342 hypothetical protein; 60.2 19 0.00041 37.5 6.0 102 607-724 29-145 (254)
137 COG0037 MesJ tRNA(Ile)-lysidin 58.7 52 0.0011 34.8 9.4 37 603-641 22-58 (298)
138 TIGR01109 Na_pump_decarbB sodi 57.6 7.2 0.00016 41.4 2.4 113 291-412 59-179 (354)
139 PRK12563 sulfate adenylyltrans 56.4 22 0.00048 38.1 5.8 43 603-645 38-80 (312)
140 PRK03359 putative electron tra 55.7 28 0.0006 36.4 6.3 107 607-725 30-149 (256)
141 COG3180 AbrB Putative ammonia 54.4 70 0.0015 34.8 9.2 91 27-129 174-267 (352)
142 COG0679 Predicted permeases [G 52.1 2.7E+02 0.0059 29.8 13.5 104 265-372 12-117 (311)
143 COG3969 Predicted phosphoadeno 51.7 19 0.00042 38.5 4.3 37 602-638 27-64 (407)
144 COG1883 OadB Na+-transporting 51.0 7.1 0.00015 40.6 1.0 128 293-436 82-214 (375)
145 PF03547 Mem_trans: Membrane t 49.7 1.4E+02 0.003 32.9 11.2 86 264-351 245-335 (385)
146 cd01713 PAPS_reductase This do 49.5 58 0.0013 30.7 7.2 37 604-641 1-37 (173)
147 COG1346 LrgB Putative effector 49.5 3.1E+02 0.0066 28.1 16.5 118 50-180 19-143 (230)
148 COG3371 Predicted membrane pro 48.1 83 0.0018 30.8 7.7 74 58-142 73-146 (181)
149 PRK10660 tilS tRNA(Ile)-lysidi 47.3 88 0.0019 35.4 9.2 58 602-664 15-73 (436)
150 TIGR00783 ccs citrate carrier 47.2 1.2E+02 0.0026 33.0 9.7 105 53-165 195-306 (347)
151 COG2985 Predicted permease [Ge 47.2 37 0.00081 38.2 5.8 106 61-174 395-506 (544)
152 COG0679 Predicted permeases [G 46.6 4E+02 0.0086 28.6 23.8 137 262-405 167-306 (311)
153 COG3199 Predicted inorganic po 45.9 71 0.0015 34.5 7.5 93 618-721 34-129 (355)
154 PRK04288 antiholin-like protei 45.4 3.4E+02 0.0073 27.9 12.0 47 94-142 64-110 (232)
155 PF00999 Na_H_Exchanger: Sodiu 45.3 7.1 0.00015 43.1 0.0 70 43-122 216-286 (380)
156 PRK10711 hypothetical protein; 44.1 2.1E+02 0.0047 29.3 10.4 79 325-407 92-170 (231)
157 PF13593 DUF4137: SBF-like CPA 43.1 2.9E+02 0.0062 29.8 11.9 139 264-407 6-147 (313)
158 KOG1288 Amino acid transporter 41.6 4E+02 0.0086 31.8 12.9 99 429-549 560-663 (945)
159 PF03652 UPF0081: Uncharacteri 40.8 87 0.0019 29.2 6.6 60 523-585 36-96 (135)
160 COG3263 NhaP-type Na+/H+ and K 39.3 5.2E+02 0.011 29.3 12.8 102 261-367 30-135 (574)
161 TIGR00840 b_cpa1 sodium/hydrog 39.0 7E+02 0.015 29.3 15.1 74 293-369 68-150 (559)
162 PF01012 ETF: Electron transfe 38.7 67 0.0014 30.7 5.7 27 613-639 15-41 (164)
163 PF04172 LrgB: LrgB-like famil 38.2 3E+02 0.0064 28.0 10.3 79 324-406 80-158 (215)
164 PRK04288 antiholin-like protei 36.0 5E+02 0.011 26.7 16.6 80 324-407 96-175 (232)
165 KOG1965 Sodium/hydrogen exchan 35.2 97 0.0021 35.9 6.9 70 294-368 102-180 (575)
166 TIGR03136 malonate_biotin Na+- 34.3 6.7E+02 0.014 27.6 18.2 80 261-344 249-328 (399)
167 PRK11103 PTS system mannose-sp 34.1 1.3E+02 0.0028 31.8 7.3 39 238-276 45-88 (282)
168 PRK08185 hypothetical protein; 33.5 5E+02 0.011 27.6 11.6 109 513-634 14-126 (283)
169 PF03390 2HCT: 2-hydroxycarbox 33.4 7.4E+02 0.016 27.8 15.4 160 241-410 42-216 (414)
170 COG2431 Predicted membrane pro 33.0 3.2E+02 0.007 28.7 9.6 43 63-117 108-150 (297)
171 PF02844 GARS_N: Phosphoribosy 32.2 16 0.00035 32.2 0.2 42 674-721 48-92 (100)
172 COG0025 NhaP NhaP-type Na+/H+ 31.3 8E+02 0.017 27.6 15.6 72 295-369 64-137 (429)
173 COG2086 FixA Electron transfer 31.0 1.4E+02 0.003 31.3 6.8 108 607-726 31-149 (260)
174 PF02601 Exonuc_VII_L: Exonucl 30.4 64 0.0014 34.7 4.5 69 601-702 13-87 (319)
175 PF07905 PucR: Purine cataboli 30.2 4.2E+02 0.009 24.0 10.1 93 453-549 16-110 (123)
176 PF06939 DUF1286: Protein of u 29.9 1.1E+02 0.0023 27.5 4.8 50 27-77 60-110 (114)
177 PRK06801 hypothetical protein; 29.6 6.2E+02 0.013 26.9 11.5 110 512-633 18-131 (286)
178 TIGR00828 EIID-AGA PTS system, 29.2 2.2E+02 0.0047 30.0 7.9 73 238-310 35-131 (271)
179 cd01994 Alpha_ANH_like_IV This 29.2 2E+02 0.0043 28.6 7.4 34 604-641 1-34 (194)
180 COG2035 Predicted membrane pro 27.7 7.4E+02 0.016 26.1 11.7 40 35-76 59-98 (276)
181 PF03977 OAD_beta: Na+-transpo 27.7 8.2E+02 0.018 26.6 19.8 87 41-129 4-96 (360)
182 PRK10696 tRNA 2-thiocytidine b 27.5 3.2E+02 0.0069 28.4 9.0 39 602-640 29-69 (258)
183 COG0239 CrcB Integral membrane 26.8 3.2E+02 0.007 25.2 7.7 109 230-345 9-121 (126)
184 PRK00109 Holliday junction res 26.8 1.5E+02 0.0033 27.7 5.7 57 526-585 42-98 (138)
185 TIGR02057 PAPS_reductase phosp 26.8 2.7E+02 0.0059 28.3 8.1 40 602-644 25-64 (226)
186 TIGR01109 Na_pump_decarbB sodi 26.5 8.5E+02 0.018 26.4 15.1 58 261-319 211-268 (354)
187 PF01507 PAPS_reduct: Phosphoa 26.2 91 0.002 29.7 4.3 34 604-641 1-34 (174)
188 PF05982 DUF897: Domain of unk 26.2 6.4E+02 0.014 27.3 10.8 84 324-407 57-141 (327)
189 COG2117 Predicted subunit of t 25.9 62 0.0013 31.0 2.8 32 604-639 2-33 (198)
190 cd00946 FBP_aldolase_IIA Class 25.6 6.4E+02 0.014 27.6 10.9 72 514-587 18-99 (345)
191 PRK04125 murein hydrolase regu 25.1 5.9E+02 0.013 24.0 9.2 94 37-140 8-106 (141)
192 PF08659 KR: KR domain; Inter 24.5 4.6E+02 0.01 25.3 9.1 84 608-700 4-91 (181)
193 PRK12737 gatY tagatose-bisphos 24.4 2.5E+02 0.0054 29.8 7.4 115 512-638 18-138 (284)
194 PRK14561 hypothetical protein; 24.0 1.3E+02 0.0028 29.9 5.0 22 604-625 2-23 (194)
195 TIGR00659 conserved hypothetic 24.0 7.9E+02 0.017 25.1 16.4 78 325-406 91-168 (226)
196 PRK12857 fructose-1,6-bisphosp 23.8 2.6E+02 0.0055 29.7 7.4 110 513-634 19-132 (284)
197 COG4651 RosB Kef-type K+ trans 23.1 9.6E+02 0.021 25.8 12.3 20 106-125 283-302 (408)
198 COG0175 CysH 3'-phosphoadenosi 22.9 1.7E+02 0.0038 30.5 5.9 21 680-702 132-152 (261)
199 PRK14461 ribosomal RNA large s 22.4 1E+03 0.022 26.4 11.7 79 610-691 279-365 (371)
200 PRK14226 camphor resistance pr 22.3 5.1E+02 0.011 24.0 8.2 46 229-276 8-53 (130)
201 TIGR00946 2a69 he Auxin Efflux 22.3 9.6E+02 0.021 25.5 21.2 133 262-403 181-316 (321)
202 PRK04169 geranylgeranylglycery 22.1 5.8E+02 0.013 26.2 9.4 86 515-619 9-94 (232)
203 PF05982 DUF897: Domain of unk 21.7 1E+03 0.023 25.7 19.5 95 261-361 179-275 (327)
204 cd04734 OYE_like_3_FMN Old yel 21.6 5.4E+02 0.012 28.0 9.7 129 553-703 184-321 (343)
205 COG3763 Uncharacterized protei 21.5 2.4E+02 0.0052 23.1 5.0 29 224-252 10-38 (71)
206 cd01995 ExsB ExsB is a transcr 21.5 2.4E+02 0.0051 27.0 6.2 86 604-702 1-88 (169)
207 PLN00200 argininosuccinate syn 21.3 1.9E+02 0.0041 32.4 6.0 38 602-642 5-42 (404)
208 PF04172 LrgB: LrgB-like famil 20.8 8.9E+02 0.019 24.5 14.2 74 104-180 56-130 (215)
209 PF03613 EIID-AGA: PTS system 20.8 1.1E+02 0.0025 32.0 4.0 39 237-276 34-77 (264)
210 PRK09765 PTS system 2-O-a-mann 20.7 9.2E+02 0.02 28.8 12.0 53 223-277 417-469 (631)
211 KOG1278 Endosomal membrane pro 20.6 1.3E+03 0.029 26.9 12.2 113 294-423 342-465 (628)
212 PRK15475 oxaloacetate decarbox 20.4 6.2E+02 0.013 27.9 9.2 81 261-344 282-362 (433)
213 PRK14212 camphor resistance pr 20.2 2.4E+02 0.0052 26.0 5.6 46 229-276 7-53 (128)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=8.6e-145 Score=1284.33 Aligned_cols=722 Identities=33% Similarity=0.581 Sum_probs=654.3
Q ss_pred cccCCCCccccccccccccCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCcccccccc
Q 047826 4 ACINLPPEVNSAGLLTQFEGGVKDYKWLDYTTPRIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIK 83 (746)
Q Consensus 4 ~c~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~ 83 (746)
+|++ +++.+|+|+|+ |+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||++||+++
T Consensus 18 ~c~~-~~~~~s~g~~~-------g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~ 89 (832)
T PLN03159 18 VCYA-PMMITTNGIWQ-------GDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSE 89 (832)
T ss_pred cccc-CCCccCCcccc-------cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcCh
Confidence 4984 43569999999 999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCcc-cHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--------
Q 047826 84 VADKIITPE-HVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG-------- 153 (746)
Q Consensus 84 ~~~~~lfp~-~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g-------- 153 (746)
.+.+.+||. +.+.++.++++|++|+||++|+|+|++.+|+++|+++.+|+.++++|+++ |+++++ ++
T Consensus 90 ~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~l---g~~~~~~l~~~~~~~~~ 166 (832)
T PLN03159 90 VFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCI---GLAFSFIFHQVSRNVHQ 166 (832)
T ss_pred hhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHH---HHHHHHHHhhcccccch
Confidence 888889998 77789999999999999999999999999999999999999999999998 776554 21
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 047826 154 GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIV 233 (746)
Q Consensus 154 ~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (746)
....+++|+++|.||+||++++|+|+|+++++.||+++++++++|+++|++++++.+....+.+....+|.++..++|++
T Consensus 167 ~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~ 246 (832)
T PLN03159 167 GTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVL 246 (832)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence 14578999999999999999999999999999999999999999999999998887665433333456677777888888
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccc------------------ccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHH
Q 047826 234 IVMVVVRPAMLLIARMTPEGKEVSR------------------TGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISG 295 (746)
Q Consensus 234 ~~~~v~r~~~~~~~~~~~~~~~~~~------------------~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~ 295 (746)
++.+++||++.|+.||++++++..+ .+|+|+++|||++|+++|+. |+++++.+|+++++++
T Consensus 247 ~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~ 325 (832)
T PLN03159 247 FCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSG 325 (832)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHH
Confidence 8999999999999999987765443 23999999999999999984 7899999999999999
Q ss_pred hhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047826 296 FFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFAS 375 (746)
Q Consensus 296 ~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~ 375 (746)
+|+|+||+++|+++|+..+.+...| ..+++++++++++|+++++++++++|+|++|++.+|++|++||+++++++++++
T Consensus 326 lflPlFFv~vGl~idl~~l~~~~~~-~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~ 404 (832)
T PLN03159 326 LLLPLFFAISGLKTNVTKIQGPATW-GLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGR 404 (832)
T ss_pred HHHHHHHHHhhheeeHHHhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999999888655445 445667778899999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcccccccccccccccCCCCCcceeEEEecCCCChhhHHHHHHhhCCC
Q 047826 376 DGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRKYAGYQIKKLVDCKPESELQIVSCIHVPSNIISAINLLSISSPT 455 (746)
Q Consensus 376 ~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~~~~~~~r~i~~~~~~~e~riLv~i~~~~~~~~li~l~~~~~~~ 455 (746)
+.|+++++.|++++++++++|.+.+|++.++|||+|||..|++|++|+.++++|+|||+|+|++++++++++|++.++++
T Consensus 405 ~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t 484 (832)
T PLN03159 405 DQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT 484 (832)
T ss_pred hcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeeccCCCcceeeecccccccc----cccccchHHHHHHHHhccccCcceEEEEEEEEcCCCChHHHHH
Q 047826 456 NESPMVVNVLHLIKLNGQATSIFVSHQSKNKNI----YTYCYSENVILSFKKFGGLHWGAASINAFTAISPPDLMHDDIC 531 (746)
Q Consensus 456 ~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~----~~~~~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~ 531 (746)
+++|+++|++||+|+++|++|.++.|+.+++.. ....++++++++|+.|++++ ++|+++++|++||+++||+|||
T Consensus 485 ~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc 563 (832)
T PLN03159 485 KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVC 563 (832)
T ss_pred CCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHH
Confidence 999999999999999999999999997643211 12345799999999999754 5799999999999999999999
Q ss_pred HHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCC-CCccccCCCCcCCcceEEEEec
Q 047826 532 TLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLK-RPVTHTDSSSADSLSNVAMLFI 610 (746)
Q Consensus 532 ~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~-~~~~~~~~~~~~~~~~I~~~f~ 610 (746)
+.|+|+++++||+||||+|+.||.++++++.+|.+|+||+++|||||||+||||.+. ++... ....+||+++|+
T Consensus 564 ~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~-----~~~~~~v~~~F~ 638 (832)
T PLN03159 564 NLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLAS-----NQVSHHVAVLFF 638 (832)
T ss_pred HHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccc-----cccceeEEEEec
Confidence 999999999999999999999999999999999999999999999999999999631 11111 344679999999
Q ss_pred cCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCC--------------------CchhhhhHHHHHHhcccC---C-C
Q 047826 611 GGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGD--------------------VDWETILDSEVLRGVKNS---E-Y 666 (746)
Q Consensus 611 gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~--------------------~~~~~~~d~~~i~~~~~~---~-~ 666 (746)
||+||||||+||+|||+||++++||+||++++...+ ++.|+++||++++||+.+ + +
T Consensus 639 GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~ 718 (832)
T PLN03159 639 GGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNES 718 (832)
T ss_pred CCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999986533221 345788999999999986 3 8
Q ss_pred eEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEEEee
Q 047826 667 IRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQQQR 744 (746)
Q Consensus 667 v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvqq~~ 744 (746)
+.|.|++|+||+|+++.+|++.++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||++++||||||||+
T Consensus 719 v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 719 IVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred eEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 999999999999999999999989999999999987899999999999999999999999999999999999999996
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-118 Score=1045.57 Aligned_cols=717 Identities=39% Similarity=0.641 Sum_probs=651.9
Q ss_pred ccccccccccccCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccC
Q 047826 11 EVNSAGLLTQFEGGVKDYKWLDYTTPRIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIIT 90 (746)
Q Consensus 11 ~~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lf 90 (746)
+.++.|+|+ |+||++|++|++++|++++++++++++.++||+|||++++||++||++||+.+|.++.+.+.+|
T Consensus 4 ~~~~~g~~~-------~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f 76 (769)
T KOG1650|consen 4 KATSNGVFP-------GVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIF 76 (769)
T ss_pred ccccCCccc-------CCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhccc
Confidence 458899999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-C-C-------h-----h
Q 047826 91 PE-HVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-G-G-------G-----P 155 (746)
Q Consensus 91 p~-~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~-g-------~-----~ 155 (746)
|. ....+++++.+|+.+++|+.|+|+|.+.+|+.+|++..+|+.++++|+.. |..+.. . + . .
T Consensus 77 ~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~---g~~~~~~~~~~~~~~~~~~~~~~~ 153 (769)
T KOG1650|consen 77 PKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGL---GFGLAFLLSDTKADKEDGALFLPF 153 (769)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHh---hhhhhhhccccccccccccccccH
Confidence 98 89999999999999999999999999999999999999999999999987 666555 1 1 1 2
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 047826 156 TGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYS-SPPKAIQLCVYILTFIVI 234 (746)
Q Consensus 156 ~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 234 (746)
+..++..+.+.||||+++++|.|+|++++++||+++++++++|+.+|.++++..+..+... +.....|.+...++++++
T Consensus 154 ~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (769)
T KOG1650|consen 154 EILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLF 233 (769)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHh
Confidence 6788889999999999999999999999999999999999999999998887777665432 355678888888999999
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccc-------------------chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHH
Q 047826 235 VMVVVRPAMLLIARMTPEGKEVSRTG-------------------FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISG 295 (746)
Q Consensus 235 ~~~v~r~~~~~~~~~~~~~~~~~~~~-------------------G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~ 295 (746)
+.+++||.+.|+.||+|+++++++.| ++|+++|||+.|+++|+++|+++.+.||+|++.++
T Consensus 234 ~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~ 313 (769)
T KOG1650|consen 234 LFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSG 313 (769)
T ss_pred eeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHH
Confidence 99999999999999999998877654 58999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047826 296 FFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFAS 375 (746)
Q Consensus 296 ~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~ 375 (746)
+|+|+||+.+|+++|+..+.. | ......+...+++|++++..++.++|+|+||++.+|++|++||.+++.+++.+.
T Consensus 314 ~llPl~~~~~G~k~di~~i~~---~-~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~ 389 (769)
T KOG1650|consen 314 LLLPLYFAISGLKTDISRINK---W-GALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGL 389 (769)
T ss_pred HHHHHHHHhhccceeHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 999999999999999998875 5 456777778889999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcccccccccccccccCCCCCcceeEEEecCCCChhhHHHHHHhhCCC
Q 047826 376 DGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRKYAGYQIKKLVDCKPESELQIVSCIHVPSNIISAINLLSISSPT 455 (746)
Q Consensus 376 ~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~~~~~~~r~i~~~~~~~e~riLv~i~~~~~~~~li~l~~~~~~~ 455 (746)
+.|+++++.|++++++++++|.++||++..+|||+++|.+|++|++|+.++++++|++.|+|+++++++++++++++.++
T Consensus 390 ~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~ 469 (769)
T KOG1650|consen 390 DRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGS 469 (769)
T ss_pred hcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcEEEEEEeeeccCCCcceeeecccccc-ccc-ccccchHHHHHHHHhccccCcceEEEEEEEEcCCCChHHHHHHH
Q 047826 456 NESPMVVNVLHLIKLNGQATSIFVSHQSKNK-NIY-TYCYSENVILSFKKFGGLHWGAASINAFTAISPPDLMHDDICTL 533 (746)
Q Consensus 456 ~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~-~~~-~~~~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~ 533 (746)
+++|++++++|++|+.+|+.|+++.|+.+++ ... ....++++.++|+.|++.+.++|+++++|+++|..+||+|||..
T Consensus 470 ~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~l 549 (769)
T KOG1650|consen 470 LESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTL 549 (769)
T ss_pred CCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHH
Confidence 8789999999999999999999899976544 222 23345688999999998544679999999999999999999999
Q ss_pred HhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCccccCCCCcCCcceEEEEeccCc
Q 047826 534 ALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPVTHTDSSSADSLSNVAMLFIGGN 613 (746)
Q Consensus 534 a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~~~~~~~~~~~~~~I~~~f~gg~ 613 (746)
|.++++++|++|||++|+.++.+++++..+|.+|++|+++|||||||++||| .++...++. ....++|++.|+||+
T Consensus 550 a~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~~~~~---~~~~~~v~~lF~GG~ 625 (769)
T KOG1650|consen 550 ALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSGVTQK---RGSSYKVVVLFLGGK 625 (769)
T ss_pred HHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecC-cccccceec---ccceeEEEEEecCCh
Confidence 9999999999999999996668999999999999999999999999999997 222211111 224679999999999
Q ss_pred ChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCC----CchhhhhHHHHHHhc-ccC---C-CeEEE-EEEecChhHHHHH
Q 047826 614 DDREALTFAKRMVRDNKVRLTVVHFIAESDDGD----VDWETILDSEVLRGV-KNS---E-YIRYV-KHVVKDGAETVKI 683 (746)
Q Consensus 614 ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~----~~~~~~~d~~~i~~~-~~~---~-~v~y~-e~~v~~g~~~~~~ 683 (746)
|||||++++.||++|+++++||+|+..+++..+ +++++..|++..+++ +.. + +..|. |+.++++.||.+.
T Consensus 626 DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~ 705 (769)
T KOG1650|consen 626 DDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTAL 705 (769)
T ss_pred hhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHH
Confidence 999999999999999999999999997654332 366777788777777 432 3 67788 6999999999999
Q ss_pred HHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEEEeec
Q 047826 684 VHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQQQRK 745 (746)
Q Consensus 684 i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvqq~~~ 745 (746)
++++.++|||++|||+++++++.+.|++||+||||||+|||.|+|+||.++.||||+|||+.
T Consensus 706 ~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 706 LRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred HHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2e-44 Score=416.34 Aligned_cols=354 Identities=16% Similarity=0.184 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccC
Q 047826 38 IMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMD 117 (746)
Q Consensus 38 ~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d 117 (746)
++..+.++++++.+++.++||+|+|.++|||++|+++||+++|.++ ..+.++.++++|++++||.+|+|+|
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~---------~~~~~~~la~lGli~llF~~Gle~d 77 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA---------DTKLAPELAELGVILLMFGVGLHFS 77 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc---------chHHHHHHHHHHHHHHHHHhHhcCC
Confidence 4567788899999999999999999999999999999999999865 4567899999999999999999999
Q ss_pred hHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHH
Q 047826 118 ISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSA 194 (746)
Q Consensus 118 ~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a 194 (746)
++.+|+.++.+...++.++++|+++ ++++++ +| ...++++|++++.||+++++++++|+|+++++.||++++++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~ 154 (558)
T PRK10669 78 LKDLMAVKSIAIPGAIAQIAVATLL---GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWL 154 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHH
Confidence 9999999888877788888888888 776665 55 47889999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHhhc----CCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cc--------
Q 047826 195 IVADFLSYATILFLTLSQVA----YSSPP----KAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGK--EV-------- 256 (746)
Q Consensus 195 ~i~D~~~~~ll~i~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~--~~-------- 256 (746)
+++|+.+++++++...+... ..+.. ...+.++..+++++++.++.|++++|+.++.++.+ ..
T Consensus 155 ~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~ 234 (558)
T PRK10669 155 IVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLAL 234 (558)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 99999999998876554321 11111 22345556667777788888999999988865432 10
Q ss_pred --------ccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHH
Q 047826 257 --------SRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALA 328 (746)
Q Consensus 257 --------~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~ 328 (746)
.+..|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+.+|+++|+..+.+. | .....++
T Consensus 235 ~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~--~-~~~~~~~ 309 (558)
T PRK10669 235 ALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ--P-LAVLATL 309 (558)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH--H-HHHHHHH
Confidence 1234999999999999999986 5777777766665 789999999999999999877543 2 2344566
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcC
Q 047826 329 GLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYD 408 (746)
Q Consensus 329 ~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~ 408 (746)
++.+++|++++++.++++|+++|+++.+|++|++||+++++++.++++.|+++++.|+++++++++|++++|++.++..|
T Consensus 310 ~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~ 389 (558)
T PRK10669 310 AIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLER 389 (558)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999888764
No 4
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=3.5e-44 Score=415.75 Aligned_cols=355 Identities=16% Similarity=0.178 Sum_probs=296.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcc
Q 047826 36 PRIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVK 115 (746)
Q Consensus 36 ~~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle 115 (746)
..++.++.+++.++.++..++||+|+|+++|||++|+++||+++|+++ ..+.++.++++|++++||.+|+|
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~---------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT---------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC---------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 458999999999999999999999999999999999999999999876 45678999999999999999999
Q ss_pred cChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHH
Q 047826 116 MDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQS 192 (746)
Q Consensus 116 ~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls 192 (746)
+|++.+|+.+|+++.+|..++++|+++ ++.+++ +| +..++++|.+++.||++++.++++|+|+++++.||.+++
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~---~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~ 151 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGL---LGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFA 151 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHH
Confidence 999999999999999999999999988 666555 55 588999999999999999999999999999999999999
Q ss_pred HHhHHhHHHHHHHHHHHHHhhcCCC-chHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-----------
Q 047826 193 SAIVADFLSYATILFLTLSQVAYSS-PPKA-IQLC----VYILTFIVIVMVVVRPAMLLIARMTPEGKE----------- 255 (746)
Q Consensus 193 ~a~i~D~~~~~ll~i~~~~~~~~~~-~~~~-~~~~----~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~----------- 255 (746)
+++++|+.++++++++..+...+.+ .... .+.+ +..++++++..++.||+++|+.|+..++-.
T Consensus 152 ~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~ 231 (621)
T PRK03562 152 ILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGF 231 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999887655432111 1111 1122 222222333445667777777655322211
Q ss_pred --cccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHH
Q 047826 256 --VSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAAL 333 (746)
Q Consensus 256 --~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~ 333 (746)
+.+.+|+|+++|||++|+++++. ++++++.++++++ +++|+|+||+.+|+++|+..+... | +.++.++++.++
T Consensus 232 a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~--~-~~il~~~~~~~~ 306 (621)
T PRK03562 232 GLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN--P-LRILILLLGFLA 306 (621)
T ss_pred HHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH--H-HHHHHHHHHHHH
Confidence 11345999999999999999986 6889999999998 799999999999999999887543 2 234455566889
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcC
Q 047826 334 VKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYD 408 (746)
Q Consensus 334 ~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~ 408 (746)
+|++++++.++++|+++++++.+|++|+++|+++++++.++.+.|+++++.|+.+++++++|++++|++.+. |+
T Consensus 307 ~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~-~~ 380 (621)
T PRK03562 307 IKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVL-LD 380 (621)
T ss_pred HHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 999999999999999999999999999999999999999999999999999999999888888887766654 44
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=5.1e-43 Score=405.51 Aligned_cols=355 Identities=17% Similarity=0.194 Sum_probs=291.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhccc
Q 047826 37 RIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKM 116 (746)
Q Consensus 37 ~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~ 116 (746)
.++.++.+++.++.+...+++|+|+|+++|||++|+++||+++|+++ +.+.+..++++|++++||.+|+|+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~---------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS---------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC---------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678888999999999999999999999999999999999999876 456688999999999999999999
Q ss_pred ChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHH
Q 047826 117 DISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSS 193 (746)
Q Consensus 117 d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~ 193 (746)
|++.+|+.+|+++.+|..++++|+++ ++++.+ +| +..++++|.+++.||++++.++++|+|.++++.||+++++
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~---~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~v 152 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAV---LAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSV 152 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHH
Confidence 99999999999999999999999877 444444 45 5788999999999999999999999999999999999999
Q ss_pred HhHHhHHHHHHHHHHHHHhhcCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-------------cc
Q 047826 194 AIVADFLSYATILFLTLSQVAYSSPPKA---IQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKE-------------VS 257 (746)
Q Consensus 194 a~i~D~~~~~ll~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~-------------~~ 257 (746)
.+++|+.++++++++..+.....+...+ .+.++..++++++..++.||+++|+.+....+-. +.
T Consensus 153 ll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~l~ 232 (601)
T PRK03659 153 LLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFM 232 (601)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999988776554322211111 1222222222333345566777666544221111 11
Q ss_pred cccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHH
Q 047826 258 RTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFG 337 (746)
Q Consensus 258 ~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~ 337 (746)
+..|+|+++|||++|+++++. +.++++.++++++ .++|+|+||+.+|+++|+..+... | +.++.++++.+++|++
T Consensus 233 ~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~--~-~~il~~~~~~l~~K~~ 307 (601)
T PRK03659 233 DALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH--L-LWVLISVVVLVAVKGL 307 (601)
T ss_pred HHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh--H-HHHHHHHHHHHHHHHH
Confidence 345999999999999999996 6888999999997 799999999999999999887643 3 3355566777899999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCc
Q 047826 338 ACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDP 409 (746)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p 409 (746)
++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++++|.+.+ +|+|
T Consensus 308 ~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~-~~~~ 378 (601)
T PRK03659 308 VLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMK-LIDK 378 (601)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HhHH
Confidence 9999999999999999999999999999999999999999999999999999999998877665555 4444
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=379.67 Aligned_cols=361 Identities=19% Similarity=0.304 Sum_probs=303.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhc
Q 047826 35 TPRIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGV 114 (746)
Q Consensus 35 ~~~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gl 114 (746)
....+.++.++++++.+.+.+++|+|+|.++||+++|+++||..++.+.. .++.++.++++|++++||.+|+
T Consensus 4 ~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~--------~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 4 LSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIE--------SSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCC--------chHHHHHHHHHhHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999955544321 6789999999999999999999
Q ss_pred ccChHHHHhchhh-HHHHHHHHHHHHHHhhhcceeee---c-CChhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHH
Q 047826 115 KMDISMVAKVGRK-AWYIGILSVIAPLVALIPGSMVP---S-GGGPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRL 189 (746)
Q Consensus 115 e~d~~~l~~~~~~-~~~i~~~~~~~p~~l~~~~~~~~---~-~g~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l 189 (746)
|+|++++|+.+|+ +...+..++..|+.+ +.... + +++..++++|.+++.||+++++++++|+|..+++.|+.
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~ 152 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLL---GLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQL 152 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHH---HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999999999 888888999999888 64332 2 33588999999999999999999999999999999999
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----Ccc---------
Q 047826 190 AQSSAIVADFLSYATILFLTLSQVAYSSP-PKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPE----GKE--------- 255 (746)
Q Consensus 190 ~ls~a~i~D~~~~~ll~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~----~~~--------- 255 (746)
++++++++|+.++++++++....+++... ..+++.+....+|.++..+..|++.+++.|+... +..
T Consensus 153 ~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l 232 (397)
T COG0475 153 ILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVL 232 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999998877653322 2245555566666666555556666666665332 111
Q ss_pred ----cccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHH
Q 047826 256 ----VSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLA 331 (746)
Q Consensus 256 ----~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 331 (746)
..+..|+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|+.+|++.+... | ..+.+++.+.
T Consensus 233 ~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~--~-~~~l~~~~~~ 309 (397)
T COG0475 233 GAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN--L-LLILLLVALA 309 (397)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc--H-HHHHHHHHHH
Confidence 12344999999999999999998544379999999998889999999999999999998765 2 3367778888
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcc
Q 047826 332 ALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPS 410 (746)
Q Consensus 332 ~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~ 410 (746)
+++|.+++++.+|..|.+++++...|..+.++|+++++.++.+.+ +.++++.+...+.+++++|.+.+.+.+.+++..
T Consensus 310 i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~ 387 (397)
T COG0475 310 ILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKRL 387 (397)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877 678899999999999999999888888888543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=2.6e-36 Score=348.61 Aligned_cols=364 Identities=15% Similarity=0.133 Sum_probs=295.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhh
Q 047826 34 TTPRIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSG 113 (746)
Q Consensus 34 ~~~~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~G 113 (746)
++..++++++++++++.+++.+++|+++|.++++|++|+++||+++|.++ |+ +.+..+.++++|+++++|..|
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~------~~-~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ------FD-NYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc------cC-cHHHHHHHHHHHHHHHHHcCc
Confidence 34467889999999999999999999999999999999999999999754 11 456789999999999999999
Q ss_pred cccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhhccHHHHHHHHhhccc-cCCchhHH
Q 047826 114 VKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPVIFCLLTHLKI-LNSELGRL 189 (746)
Q Consensus 114 le~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l-~~s~~g~l 189 (746)
+|+|++.+|+++++++.+++.++++|++++ +.++.+ +| +..++++|++++.||++++.++++|.|+ ++++.+++
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~--g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~ 153 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLT--GLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVAST 153 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhH
Confidence 999999999999999999999999998882 333333 55 5889999999999999999999999995 79999999
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---Cc-cc-------
Q 047826 190 AQSSAIVADFLSYATILFLTLSQVAYS--SPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPE---GK-EV------- 256 (746)
Q Consensus 190 ~ls~a~i~D~~~~~ll~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~---~~-~~------- 256 (746)
+.+++.+||.++++++.+......++. ..+..++.++..+++.++.++++++++.|+.+|... +. ++
T Consensus 154 l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~~~l 233 (562)
T PRK05326 154 LEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAGAL 233 (562)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 999999999999988876655443322 112233444555566667777888888888888632 11 11
Q ss_pred -----ccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHH
Q 047826 257 -----SRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLA 331 (746)
Q Consensus 257 -----~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 331 (746)
.+.+|.|+++|+|++|+++++.++..+.-.+++.+...+++.|+||+.+|+.+|++.+.+. .| ..+++.+++.
T Consensus 234 ~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~-~~l~i~~~l~ 311 (562)
T PRK05326 234 LIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-AL-PALLLALFLI 311 (562)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH-HHHHHHHHHH
Confidence 1234999999999999999987644444455566656789999999999999999887643 22 2233344567
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCC-hhhHHHHHHHHHHHHhhhHHHHHhhcCc
Q 047826 332 ALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVS-PNMFRFMLGVVIVTGSVVPILVRKLYDP 409 (746)
Q Consensus 332 ~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~-~~~~~~lv~~~lltt~i~~~l~~~~~~p 409 (746)
+++|++++++..+.++++|||++.+|+. ++||+++++++.++...|+.+ +..|+++.+++++|+++.++.++.+.|.
T Consensus 312 ~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 312 LVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred HHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHH
Confidence 7899999999999999999999999994 899999999999999999886 5667888888999998888777777653
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.1e-32 Score=290.90 Aligned_cols=250 Identities=18% Similarity=0.339 Sum_probs=210.2
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchh
Q 047826 47 IISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGR 126 (746)
Q Consensus 47 ~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~ 126 (746)
+++.+.+.++||+|+|.+++||++|+++||+++|.++ +.+.++.++++|+++++|.+|+|+|++.+||++|
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~---------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~ 72 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS---------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLRK 72 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC---------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4677789999999999999999999999999999876 4578999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-HHhhhcceeeec-CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHHhHHHH
Q 047826 127 KAWYIGILSVIAP-LVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVADFLSY 202 (746)
Q Consensus 127 ~~~~i~~~~~~~p-~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~ 202 (746)
++..+++.++++| +.+ ++.+.+ ++ ...++++|++++.||++++.++++|+|+.+++.|+++++++++||++++
T Consensus 73 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 73 AAFGVGVLQVLVPGVLL---GLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 9999999999999 555 554555 55 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-----------------ccccchhh
Q 047826 203 ATILFLTLSQVAY-SSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEV-----------------SRTGFEFT 264 (746)
Q Consensus 203 ~ll~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~-----------------~~~~G~~~ 264 (746)
+++++.....++. .+.....+.+...+++.++.+.+.|+..+|+.|+.++.+.- .+.+|+|+
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s~ 229 (273)
T TIGR00932 150 PLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLSM 229 (273)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 9998887665432 12223344444555555566677788888888876543211 13349999
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccC
Q 047826 265 VLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLH 310 (746)
Q Consensus 265 ~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d 310 (746)
++|||++|+++++. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 230 ~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 230 ALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 99999999999997 45788999999998 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.8e-36 Score=332.72 Aligned_cols=351 Identities=22% Similarity=0.359 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccH-HHHHHHHHHHHHHHHHHhhcccChHHHH
Q 047826 44 TMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHV-QLIGSMGNIGIAFFIFQSGVKMDISMVA 122 (746)
Q Consensus 44 ~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~-~~l~~la~lgl~~llF~~Gle~d~~~l~ 122 (746)
++++.+.+.+.++||+++|.+++|+++|+++||.+++.++ .+ ...+.++++|+.+++|.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~---------~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE---------PDNPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc---------chhhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3455566777789999999999999999999999888654 23 7788999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHhhhcceeeec----CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhH
Q 047826 123 KVGRKAWYIGILSVIAPLVALIPGSMVPS----GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIV 196 (746)
Q Consensus 123 ~~~~~~~~i~~~~~~~p~~l~~~~~~~~~----~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i 196 (746)
+++|+++.+++.++++|++++ ++.+.+ +| ...++++|.+++.||++++.++++|.+..+++.++++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i 151 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILV--GFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVI 151 (380)
T ss_dssp ------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTT
T ss_pred cccccccccccceeeehhhHH--HHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchh
Confidence 999999999999999998873 333331 23 4889999999999999999999999888999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcc--------------cccc
Q 047826 197 ADFLSYATILFLTLSQVA--YSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMT-PEGKE--------------VSRT 259 (746)
Q Consensus 197 ~D~~~~~ll~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~-~~~~~--------------~~~~ 259 (746)
||+++++++.+.....+. ..+.......++..+...++.+++.+++..|+.|+. +..+. ..+.
T Consensus 152 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 231 (380)
T PF00999_consen 152 NDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEI 231 (380)
T ss_dssp TTTTTTTTT-----------------------------------------------------------------------
T ss_pred hccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccc
Confidence 999999998776655421 111122222333333344444455555555555553 21111 1234
Q ss_pred cchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCccccc-chhhhHHHHHHHHHHHHHHHHHH
Q 047826 260 GFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLH-TFNSLIWHNIALAGLAALVKFGA 338 (746)
Q Consensus 260 ~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~-~~~~~~~~~~~~~~~~~~~K~~~ 338 (746)
+|.++++|+|++|+++++. +.++++.++++++.+++|.|+||+++|+++|++.+. +...| ...+++.+..+++|+++
T Consensus 232 ~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~k~~~ 309 (380)
T PF00999_consen 232 LGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVI-ILVLLLLIAILLGKFIG 309 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhh-hhHHHHHHHHHHhhhce
Confidence 4999999999999999955 567779999999988999999999999999998874 22233 44566666677899999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhc
Q 047826 339 CALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLY 407 (746)
Q Consensus 339 ~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~ 407 (746)
+++.+++.|.+++|+..+|+.+++||+++++++..+.+.|.++++.+++++.++++|+++.|+.++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 310 VYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp -------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred eehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998887765
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-31 Score=261.24 Aligned_cols=348 Identities=15% Similarity=0.156 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHH
Q 047826 41 LIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISM 120 (746)
Q Consensus 41 ~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~ 120 (746)
.+..-+.++++++.+..|+++|+.|||+++|++.||.--|... +......++++|++++||-+|++.++++
T Consensus 10 tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva---------d~~La~~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 10 TIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA---------DQTLAPELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc---------chhHHHHHHHhhHHHHHHhcchheeHHH
Confidence 3445567888999999999999999999999999998766544 4455569999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHhhhcceeeec-CCh--hHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHH
Q 047826 121 VAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GGG--PTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVA 197 (746)
Q Consensus 121 l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~--~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~ 197 (746)
+.....-++--++..+.+-..+ |..+.+ .|+ ...+.+|.++|..|+.++.|-++|.++.+++.||++++--++.
T Consensus 81 LLavk~iAipgAl~qia~at~l---g~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLive 157 (408)
T COG4651 81 LLAVKAIAIPGALAQIALATLL---GMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVE 157 (408)
T ss_pred HhhHHHHhcchHHHHHHHHHHH---HhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHH
Confidence 8776655544455555555555 666555 552 6788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhc----CCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCccc----------
Q 047826 198 DFLSYATILFLTLSQVA----YSSP----PKAIQLCVYILTFIVIVMVVVRPAMLLIARMTP---EGKEV---------- 256 (746)
Q Consensus 198 D~~~~~ll~i~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~~---------- 256 (746)
|+..++.+.+..+.++- +... ....+++.+...|..++.++.|++..|+..+.. .++..
T Consensus 158 Dl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALg 237 (408)
T COG4651 158 DLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALG 237 (408)
T ss_pred HHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99998888777655431 1111 123356668889999999999999999988742 22211
Q ss_pred -----ccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHH
Q 047826 257 -----SRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLA 331 (746)
Q Consensus 257 -----~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 331 (746)
.+.+|+++.+|||++|+++.+. ..+++..|..-+ .++.|.-+||+.+||.+|+..+.+. .| .+.....+.
T Consensus 238 Va~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slp-LrdaFaVlFFvsVGmlf~P~~l~~~-pl--~vlatllii 312 (408)
T COG4651 238 VAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLP-LRDAFAVLFFVSVGMLFDPMILIQQ-PL--AVLATLLII 312 (408)
T ss_pred HhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccC-HHHHHHHHHHHHhhhhcCcHHhhcc-hH--HHHHHHHHH
Confidence 1345999999999999999987 466666655555 4899999999999999999887654 32 244455556
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHh
Q 047826 332 ALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRK 405 (746)
Q Consensus 332 ~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~ 405 (746)
..+|-+.++...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++.--..++...+++.++-|.+...
T Consensus 313 ~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~ 386 (408)
T COG4651 313 LFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFAL 386 (408)
T ss_pred HhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999666666655555555544444443
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.92 E-value=1.7e-22 Score=231.34 Aligned_cols=333 Identities=11% Similarity=0.019 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhCCChHHHHHHHHHhcCccccccccccccccCcc-cHHHHHHHHHHHHHHHHHHhhc
Q 047826 37 RIMFLIATMLIISQAFHSVLK-RFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPE-HVQLIGSMGNIGIAFFIFQSGV 114 (746)
Q Consensus 37 ~~l~~i~~il~~a~~~~~l~~-rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~-~~~~l~~la~lgl~~llF~~Gl 114 (746)
..++.++..+++..++..+++ |+.+|..+.++++|+++||+++|++++.. +.. ....++ ++++++++.+|.+|+
T Consensus 13 l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~le-IteIvL~I~LFa~Gl 88 (810)
T TIGR00844 13 VAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLE-ISRILLCLQVFAVSV 88 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHH-HHHHHHHHHHHHHHH
Confidence 444555555555555555555 99999999999999999999988765210 000 123344 999999999999999
Q ss_pred ccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec---CC--hhHHHHHHHHHhhccHHHHHHHHh---hccccCCch
Q 047826 115 KMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS---GG--GPTGLFITPLYYMTAYPVIFCLLT---HLKILNSEL 186 (746)
Q Consensus 115 e~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~---~g--~~~~l~ig~~ls~Ts~~vv~~il~---el~l~~s~~ 186 (746)
+++.+.+++.++..+.+.+.++.+.+++ +.++++ +| +..++++|+++++|++.....+++ ..+ ++.++
T Consensus 89 ~L~~~~Lrr~wrsV~rLl~~~M~lT~li---vAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rL 164 (810)
T TIGR00844 89 ELPRKYMLKHWVSVTMLLVPVMTSGWLV---IALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHL 164 (810)
T ss_pred hCCHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHH
Confidence 9999999999999999998888888887 555544 35 589999999999999766666665 223 56788
Q ss_pred hHHHHHHHhHHhHHHHHHHHHHHHHhh--c-CCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--c
Q 047826 187 GRLAQSSAIVADFLSYATILFLTLSQV--A-YSSP------PKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGK--E 255 (746)
Q Consensus 187 g~l~ls~a~i~D~~~~~ll~i~~~~~~--~-~~~~------~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~--~ 255 (746)
..++.+.+.+||.++++++.+...+.. + +... ..++|.++..++++++++++.++++.|+.+|..... .
T Consensus 165 R~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esf 244 (810)
T TIGR00844 165 RNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESF 244 (810)
T ss_pred HhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 999999999999999887755443321 1 1111 123344555555666666666666666655532221 1
Q ss_pred cc-------------cccchhhHHHHHHHHhhcCCCCchhhH-HHHHhhHhHHHhhHHHHHHHHhhccCcccccc----h
Q 047826 256 VS-------------RTGFEFTVLGLYILGLAVPHGPPLGSA-LVNKFDTMISGFFLPIFVTTSAMRLHDLSLHT----F 317 (746)
Q Consensus 256 ~~-------------~~~G~~~~lgafiaGl~i~~~~~~~~~-l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~----~ 317 (746)
+. +.+|.+.++++|++|+++.+..+..++ -...+......++..++|+++|+.+.+..+.. .
T Consensus 245 la~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~ 324 (810)
T TIGR00844 245 LAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGL 324 (810)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhH
Confidence 11 223889999999999999986433222 12335556677889999999999998776643 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCC
Q 047826 318 NSLIWHNIALAGLAALVKFGACALLLLYW--KMHRNDAMALALIMNIKGIVEMAFYTFASDGRY 379 (746)
Q Consensus 318 ~~~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~ 379 (746)
..| ..+++.+++.++.|+.++++...+. ..+|+|.+++|+ .++||..++.++.++.+.+.
T Consensus 325 ~~w-~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 325 DVW-RLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 245 3345555666788988888754443 468999999999 89999999999999987764
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.91 E-value=3.7e-22 Score=227.93 Aligned_cols=348 Identities=13% Similarity=0.113 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCcccccc-ccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHH
Q 047826 44 TMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQV-IKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVA 122 (746)
Q Consensus 44 ~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~-~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~ 122 (746)
.+++++.....+++|+++|.+++++++|+++||..++. ++ + +.+ .+..+++..++|..|+++|++.+|
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~------~--~~~---~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVP------L--DRE---IVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCC------C--CHH---HHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34445556678999999999999999999999864432 11 1 222 234478899999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHhhhcceeeec--CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHHh
Q 047826 123 KVGRKAWYIGILSVIAPLVALIPGSMVPS--GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVAD 198 (746)
Q Consensus 123 ~~~~~~~~i~~~~~~~p~~l~~~~~~~~~--~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D 198 (746)
++++....+++.++++|+++ +..+.+ +| ...++++|++++.|+++++.+++++.++ +++..+++.+++.+||
T Consensus 74 ~~~~~i~~la~~~vlit~~~---v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~~-p~rl~~il~gESllND 149 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVV---VGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGESLLND 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhhhhhcc
Confidence 99999999999999999888 443333 45 4899999999999999999999999885 7889999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc---------------ccccc
Q 047826 199 FLSYATILFLTLSQVA--YSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEV---------------SRTGF 261 (746)
Q Consensus 199 ~~~~~ll~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~---------------~~~~G 261 (746)
..+++++.++.....+ ..+.......++..++.+++.++++..+..|+.|+..+.... .+..|
T Consensus 150 ~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lAe~lg 229 (525)
T TIGR00831 150 GAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLAERFH 229 (525)
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999877665542 222222333333333333444444555555555443322111 13349
Q ss_pred hhhHHHHHHHHhhcCCCCch------hhHHHHHhhHhHHHhhHHHHHHHHhhccCccccc--c-hh-hh--HHH-----H
Q 047826 262 EFTVLGLYILGLAVPHGPPL------GSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLH--T-FN-SL--IWH-----N 324 (746)
Q Consensus 262 ~~~~lgafiaGl~i~~~~~~------~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~--~-~~-~~--~~~-----~ 324 (746)
.|+++++|++|+++++..+. .+.-.+.+......++.+++|+.+|+.+...... . .. .| ... .
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA 309 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999975432 1122334445567889999999999998631110 0 00 00 000 1
Q ss_pred HHHHHHHHHHHHHHHHHH--HHH-----hCCChHHHHHHHHHHHhHHHHHHHHHHhhhc---CC--CCCh-----hhHHH
Q 047826 325 IALAGLAALVKFGACALL--LLY-----WKMHRNDAMALALIMNIKGIVEMAFYTFASD---GR--YVSP-----NMFRF 387 (746)
Q Consensus 325 ~~~~~~~~~~K~~~~~~~--~~~-----~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~---~~--~i~~-----~~~~~ 387 (746)
+++.......|++..+.. .++ .+++||+.+.+++ .+.||.++++++..... .| .-.. -++.+
T Consensus 310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~v 388 (525)
T TIGR00831 310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGV 388 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHH
Confidence 112222334455443322 111 2478999999998 79999999998764321 11 1111 22444
Q ss_pred HHHHHHHHHhhhHHHHHhhc
Q 047826 388 MLGVVIVTGSVVPILVRKLY 407 (746)
Q Consensus 388 lv~~~lltt~i~~~l~~~~~ 407 (746)
++++.++.....||+++++-
T Consensus 389 Vl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 389 ILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHhhHHHHHHhcC
Confidence 55555555555667776654
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.9e-19 Score=196.90 Aligned_cols=359 Identities=13% Similarity=0.122 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhccc
Q 047826 37 RIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKM 116 (746)
Q Consensus 37 ~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~ 116 (746)
..++++.++++++.+...+.+|+..|.+..+++.|++.||.+++..... ....-+.+-.+.+..++|..|+|+
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~-------~~~~~el~~~l~l~ilLf~~g~~l 78 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD-------LELDPELFLVLFLAILLFAGGLEL 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc-------ccCChHHHHHHHHHHHHHHhHhcC
Confidence 4567788888899999999999999999999999999999988876521 011112223899999999999999
Q ss_pred ChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-C-C--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHH
Q 047826 117 DISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-G-G--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQS 192 (746)
Q Consensus 117 d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~-g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls 192 (746)
|.+.+||+++....+++.+++++.+.. |+++.+ + + ...++++|+++++|++.++.+++++.+ .+.++.+++.+
T Consensus 79 ~~~~l~~~~~~I~~La~~~v~it~~~~--g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~g 155 (429)
T COG0025 79 DLRELRRVWRSILVLALPLVLITALGI--GLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEG 155 (429)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHH
Confidence 999999999999999999999888772 344333 3 4 379999999999999999999999877 58899999999
Q ss_pred HHhHHhHHHHHHHHHHHHHhhcCCC--chH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc----------
Q 047826 193 SAIVADFLSYATILFLTLSQVAYSS--PPK----AIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEV---------- 256 (746)
Q Consensus 193 ~a~i~D~~~~~ll~i~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~---------- 256 (746)
++.+||..+++++.+......++.. ... .++..+..++.+++.+++.+++++++.+|.-.....
T Consensus 156 ESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~ 235 (429)
T COG0025 156 ESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF 235 (429)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 9999999999999877665543222 122 233444445556666666666666666653111111
Q ss_pred -----ccccchhhHHHHHHHHhhcC-----CCCchh-hHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHH
Q 047826 257 -----SRTGFEFTVLGLYILGLAVP-----HGPPLG-SALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNI 325 (746)
Q Consensus 257 -----~~~~G~~~~lgafiaGl~i~-----~~~~~~-~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~ 325 (746)
.+..|.+.+++..++|+... +..+.. +...+.+......++.-+.|+..|++++....... .| ..++
T Consensus 236 ~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-~~-~~~l 313 (429)
T COG0025 236 AAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-GL-LGLL 313 (429)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hH-HHHH
Confidence 12238899999999998774 111222 33444566667788889999999999998877654 33 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHHhHHHHHHHHHHhhhcCC------CCChhhHHHHHHHHH
Q 047826 326 ALAGLAALVKFGACALLLLYW------KMHRNDAMALALIMNIKGIVEMAFYTFASDGR------YVSPNMFRFMLGVVI 393 (746)
Q Consensus 326 ~~~~~~~~~K~~~~~~~~~~~------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~------~i~~~~~~~lv~~~l 393 (746)
+.++..+++|+++++...+.. ..++++.+.+++ -++||.++++++......- .+-.-++..++.+++
T Consensus 314 ~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~ 392 (429)
T COG0025 314 VALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLL 392 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHH
Confidence 777788899999999998874 379999999998 7999999999888765321 122234555566666
Q ss_pred HHHhhhHHHHHhhcC
Q 047826 394 VTGSVVPILVRKLYD 408 (746)
Q Consensus 394 ltt~i~~~l~~~~~~ 408 (746)
+.+...+|+.++...
T Consensus 393 v~g~t~~~l~~~~~~ 407 (429)
T COG0025 393 VQGLTLPPLAKKLEV 407 (429)
T ss_pred HHhhhHHHHHHHhcc
Confidence 666667777777654
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.3e-19 Score=190.05 Aligned_cols=361 Identities=15% Similarity=0.153 Sum_probs=280.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHh
Q 047826 33 YTTPRIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQS 112 (746)
Q Consensus 33 ~~~~~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~ 112 (746)
++...+++.-.++++.+.+.+.+..|+|.|..+-.+..|++.|.-++|.++ |. +...-..++++++++++|..
T Consensus 3 ~t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~------fd-Ny~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 3 HTINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE------FD-NYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc------cC-ccHHHHHHHHHHHHHHhhcC
Confidence 345556666667888899999999999999999999999999999998776 22 45667788999999999999
Q ss_pred hcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHH
Q 047826 113 GVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRL 189 (746)
Q Consensus 113 Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l 189 (746)
|+.++++.+|...++++.++.+|++++-.++ |.+..| ++ +.+++++|++...|+.+.+..+|.+.++ |.+.+.+
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Lt--g~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl-~erv~st 152 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLT--GVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNL-NERVAST 152 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCCh-hhhhhhh
Confidence 9999999999999999999999999988873 555555 66 6999999999999999999999988885 8899999
Q ss_pred HHHHHhHHhHHHHHHHH-HHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---cc--------
Q 047826 190 AQSSAIVADFLSYATIL-FLTLSQVAYSSP-PKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGK---EV-------- 256 (746)
Q Consensus 190 ~ls~a~i~D~~~~~ll~-i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~---~~-------- 256 (746)
.--.+.-||..++++.. ++.....++.+. +..+..++.-.++.++.++...++..|+++|+.-++ |+
T Consensus 153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~Ll 232 (574)
T COG3263 153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGGLL 232 (574)
T ss_pred EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 99999999999988864 444444432221 222223456667778888888899999999874332 11
Q ss_pred ----ccccchhhHHHHHHHHhhcCCCCch-hhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHH
Q 047826 257 ----SRTGFEFTVLGLYILGLAVPHGPPL-GSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLA 331 (746)
Q Consensus 257 ----~~~~G~~~~lgafiaGl~i~~~~~~-~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 331 (746)
++..|-+.++..+++|+.+.|.+-. .+.+.+..+.+ .++.--+.|...|+..+++++... . ++.+++.+.+.
T Consensus 233 ~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~i-a-vPailL~l~mi 309 (574)
T COG3263 233 IFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPI-A-IPAILLSLWMI 309 (574)
T ss_pred HHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHh-h-HHHHHHHHHHH
Confidence 1234999999999999999998533 34566666665 566666778889999999987654 3 35566777778
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhh-HHHHHHHHHHHHhhhHHHHHhhc
Q 047826 332 ALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNM-FRFMLGVVIVTGSVVPILVRKLY 407 (746)
Q Consensus 332 ~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~-~~~lv~~~lltt~i~~~l~~~~~ 407 (746)
+++|++++|+...-+|++++|.+.+++ -+-||.++++++..-.-.|.-+.+. |++.-+.++++.++.+..+.+..
T Consensus 310 fvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~~a 385 (574)
T COG3263 310 FVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAA 385 (574)
T ss_pred HHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchHHH
Confidence 899999999999889999999999999 7999999999999988777644433 44444445555444443333333
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.80 E-value=2.3e-17 Score=188.63 Aligned_cols=347 Identities=12% Similarity=0.092 Sum_probs=227.6
Q ss_pred HHHHHHHH-hhh-CCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchh
Q 047826 49 SQAFHSVL-KRF-GIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGR 126 (746)
Q Consensus 49 a~~~~~l~-~rl-~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~ 126 (746)
+.+...+. ++. ++|..+..|+.|+++|+...+... ....-+ +. +.+-.+.+-.++|..|+++|.+.++++.+
T Consensus 21 ~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~-~~~~~l--~~---~lf~~~~LPpIlFe~g~~l~~~~f~~n~~ 94 (559)
T TIGR00840 21 AKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH-IDPPTL--DS---SYFFLYLLPPIVLDAGYFMPQRNFFENLG 94 (559)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC-CccCCc--CH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33333444 344 499999999999999986433211 000001 22 33344567789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcceeeec------C---C--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHh
Q 047826 127 KAWYIGILSVIAPLVALIPGSMVPS------G---G--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAI 195 (746)
Q Consensus 127 ~~~~i~~~~~~~p~~l~~~~~~~~~------~---g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~ 195 (746)
..+.+|+.|+++..+++ |..+.+ + + ...++++|+++|+|++..+..++++.+. +.++-.++.++++
T Consensus 95 ~Il~lAv~Gvlit~~~i--g~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v-~~~L~~ll~gESl 171 (559)
T TIGR00840 95 SILIFAVVGTLINAFVI--GLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHV-NEKLYIIIFGESL 171 (559)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCC-Ccchhhheehhhh
Confidence 99999999999988773 333221 1 2 3889999999999999999999999984 8899999999999
Q ss_pred HHhHHHHHHHHHHHHHhhc---CCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--------------
Q 047826 196 VADFLSYATILFLTLSQVA---YSSPPKAI---QLCVYILTFIVIVMVVVRPAMLLIARMTPEGKE-------------- 255 (746)
Q Consensus 196 i~D~~~~~ll~i~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~-------------- 255 (746)
+||.++++++.++..+... ..+..... ..++...+..+++++++..+..++.|+....+.
T Consensus 172 lNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~Y 251 (559)
T TIGR00840 172 LNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSY 251 (559)
T ss_pred hhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 9999999998777655431 11111111 111111112344455555556666666533221
Q ss_pred -cccccchhhHHHHHHHHhhcCCC-----CchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHH
Q 047826 256 -VSRTGFEFTVLGLYILGLAVPHG-----PPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAG 329 (746)
Q Consensus 256 -~~~~~G~~~~lgafiaGl~i~~~-----~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~ 329 (746)
+.|.+|.+++++.+++|+++.+. ++..+.-.+.+......+...+.|+++|+.+-... ... .| ...++.++
T Consensus 252 ~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~~~-~~-~~i~~~l~ 328 (559)
T TIGR00840 252 LFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-HEW-NW-AFVVATLS 328 (559)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhH-HH-HHHHHHHH
Confidence 12344999999999999998642 22222223344455567888999999999763221 112 33 33344445
Q ss_pred HHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhh-----HHHHHHHHHHHHhh
Q 047826 330 LAALVKFGACALLLLY------WKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNM-----FRFMLGVVIVTGSV 398 (746)
Q Consensus 330 ~~~~~K~~~~~~~~~~------~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~-----~~~lv~~~lltt~i 398 (746)
+.+++|+++++...+. .+.+++|.+.+++ .+.||.++++++....+.+.-..+. +.++++++++....
T Consensus 329 ~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T 407 (559)
T TIGR00840 329 FCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGT 407 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhh
Confidence 5668899888776543 3579999999998 7899999999887654433322232 23333344444445
Q ss_pred hHHHHHhhcC
Q 047826 399 VPILVRKLYD 408 (746)
Q Consensus 399 ~~~l~~~~~~ 408 (746)
.+|+++++.-
T Consensus 408 ~~pl~~~L~l 417 (559)
T TIGR00840 408 IKPLVEVLKV 417 (559)
T ss_pred HHHHHHHhCC
Confidence 6788887753
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.76 E-value=1.2e-17 Score=179.14 Aligned_cols=272 Identities=11% Similarity=0.082 Sum_probs=170.5
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhcccc-
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLH- 508 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~- 508 (746)
-|||+|++.++....+++.+..++ ++...+++++|+++-.....+...... ..........++..+.++++.+..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPD--EREAMRQGVISQRTAWIREQAKPYL 79 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchh--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 369999999999999999999988 445578999998753322111110000 000000000111112222222111
Q ss_pred CcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCC
Q 047826 509 WGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLK 588 (746)
Q Consensus 509 ~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~ 588 (746)
..+++++..+.. ..+.++.|++.|+++++||||+|+|++.+..+. .+|+..+++++++||||.++.++. +
T Consensus 80 ~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~~~~--~ 149 (305)
T PRK11175 80 DAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVKDQD--W 149 (305)
T ss_pred hcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEecccc--c
Confidence 134666654442 268899999999999999999999987654443 378999999999999998886532 1
Q ss_pred CCccccCCCCcCCcceEEEEeccCcCh-------HHHHHHHHHhhhCC-CeEEEEEEeeecCCC---------CCCchhh
Q 047826 589 RPVTHTDSSSADSLSNVAMLFIGGNDD-------REALTFAKRMVRDN-KVRLTVVHFIAESDD---------GDVDWET 651 (746)
Q Consensus 589 ~~~~~~~~~~~~~~~~I~~~f~gg~dd-------reAl~~a~rma~~~-~v~ltv~~~~~~~~~---------~~~~~~~ 651 (746)
...++|+++..++++. ..|+++|.++|+.. +++++++|+...... ..++.++
T Consensus 150 -----------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~ 218 (305)
T PRK11175 150 -----------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYND 218 (305)
T ss_pred -----------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHH
Confidence 1256899999998643 67999999999998 999999998753211 0111111
Q ss_pred hhH---HHHHHhcccCCCeEEEEEEecC---hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhh
Q 047826 652 ILD---SEVLRGVKNSEYIRYVKHVVKD---GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDL 725 (746)
Q Consensus 652 ~~d---~~~i~~~~~~~~v~y~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~ 725 (746)
+.. ++.++++.....+...+..+.+ .+++.+++++. +.||+++|+++. +++.+| -+|-..+-
T Consensus 219 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~~~------~~~~~~----llGS~a~~ 286 (305)
T PRK11175 219 AIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHL--DAELVILGTVGR------TGLSAA----FLGNTAEH 286 (305)
T ss_pred HHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHh--CCCEEEECCCcc------CCCcce----eecchHHH
Confidence 111 1223333221111111112222 23355666654 899999999864 233333 68999999
Q ss_pred hhcCCCCCcccEEEEE
Q 047826 726 LASKDLGGKCSVLVMQ 741 (746)
Q Consensus 726 las~~~~~~~svLvvq 741 (746)
++.+ .+|+||||.
T Consensus 287 v~~~---~~~pVLvv~ 299 (305)
T PRK11175 287 VIDH---LNCDLLAIK 299 (305)
T ss_pred HHhc---CCCCEEEEc
Confidence 9987 899999996
No 17
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.71 E-value=5.7e-15 Score=160.21 Aligned_cols=290 Identities=15% Similarity=0.098 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHhhcccChHH----HHhchhh--HHHHHHHHHHHHHHhhhcceeeecCChhHHHHHHHH-HhhccHH
Q 047826 98 GSMGNIGIAFFIFQSGVKMDISM----VAKVGRK--AWYIGILSVIAPLVALIPGSMVPSGGGPTGLFITPL-YYMTAYP 170 (746)
Q Consensus 98 ~~la~lgl~~llF~~Gle~d~~~----l~~~~~~--~~~i~~~~~~~p~~l~~~~~~~~~~g~~~~l~ig~~-ls~Ts~~ 170 (746)
..+.+--+.+|.|.+|+|+.-+. +++..|. ...-++.|+++|.++ -.++. .+... ..-|.. -+.|+.+
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPali---y~~~n-~~~~~-~~~GW~Ip~ATDIA 138 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALI---YVAVN-LAGGG-ALRGWAIPTATDIA 138 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHH---HHHHh-CCchh-hhhhhhhhhhhHHH
Confidence 33444445689999999996543 3222222 345688899999887 22221 12111 112222 2568888
Q ss_pred HHHHHHhhccc-cCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 171 VIFCLLTHLKI-LNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARM 249 (746)
Q Consensus 171 vv~~il~el~l-~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~ 249 (746)
....++..+|. .++..+..+++.|++||+.++++++++.+ ++ ....+.......+.++ |+.+|
T Consensus 139 FalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~---i~~~~L~~a~~~~~~l----------~~l~~ 202 (423)
T PRK14853 139 FALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SE---LNLEALLLALVPLALF----------WLLVQ 202 (423)
T ss_pred HHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CC---CCHHHHHHHHHHHHHH----------HHHHH
Confidence 88999999875 48889999999999999999999998872 12 2222322222222111 11122
Q ss_pred cCCCccc------------ccccchhhHHHHHHHHhhcCCCC-----------chhhHHHHHhhHhHHHhhHHHH-HHHH
Q 047826 250 TPEGKEV------------SRTGFEFTVLGLYILGLAVPHGP-----------PLGSALVNKFDTMISGFFLPIF-VTTS 305 (746)
Q Consensus 250 ~~~~~~~------------~~~~G~~~~lgafiaGl~i~~~~-----------~~~~~l~~kl~~~~~~~f~PiF-F~~~ 305 (746)
.+-.+.. ....|+|+.+|+|++|+++|..+ +..+++++++++++..+++|+| |+..
T Consensus 203 ~~V~~~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANa 282 (423)
T PRK14853 203 KRVRKWWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSA 282 (423)
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111110 11239999999999999999521 2357899999999999999999 9999
Q ss_pred hhccCc-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhh
Q 047826 306 AMRLHD-LSLHTFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFA 374 (746)
Q Consensus 306 G~~~d~-~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~ 374 (746)
|.++|. ..+.+...- .....+++..+++|++|.+..++.. +++|++-+.+|++-+.-=++++.+++++
T Consensus 283 GV~l~~~~~~~~~~~~-pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmSlFI~~LA 361 (423)
T PRK14853 283 GVAIGGLSGLGAALTD-PIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVSLLIGELA 361 (423)
T ss_pred hheecCchhHHHHhhc-hHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999986 434111010 2355677778899999988877653 4789999999997777778999999999
Q ss_pred hc-CCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCc
Q 047826 375 SD-GRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDP 409 (746)
Q Consensus 375 ~~-~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p 409 (746)
++ .....++.=..+++.++++.+++-.+.+...++
T Consensus 362 f~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~~ 397 (423)
T PRK14853 362 FGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNRK 397 (423)
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 94 222233444445555666666666666655443
No 18
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.45 E-value=8.3e-12 Score=133.23 Aligned_cols=256 Identities=14% Similarity=0.085 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHhhcccChHHHHh---chhh---HHHHHHHHHHHHHHhhhcceeeecCC-hhHHHHHHHHHh-hccH
Q 047826 98 GSMGNIGIAFFIFQSGVKMDISMVAK---VGRK---AWYIGILSVIAPLVALIPGSMVPSGG-GPTGLFITPLYY-MTAY 169 (746)
Q Consensus 98 ~~la~lgl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g-~~~~l~ig~~ls-~Ts~ 169 (746)
..+.+--+.+|.|.+|+|++-+.+.. +.|| ...-++.|+++|.++ =..+.. | +...--+|+-++ -++|
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~i---y~~~n~-~~~~~~~GW~IP~ATDiAF 129 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALI---YLAFNA-NDPITREGWAIPAATDIAF 129 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH---Hhheec-CCCcccCccccccHHHHHH
Confidence 33444445689999999998776532 3333 345678899999887 222222 1 100111111111 1222
Q ss_pred HHHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 170 PVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARM 249 (746)
Q Consensus 170 ~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~ 249 (746)
.+-...+--.+ .+..+....++-|++||+.++++++++++- ..+..+......++.++ ++.+|
T Consensus 130 algvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~------~i~~~~L~~a~~~~~~l----------~~~~~ 192 (373)
T TIGR00773 130 ALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYTN------DLSMAALLVAAVAIAVL----------AVLNR 192 (373)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecCC------CCCHHHHHHHHHHHHHH----------HHHHH
Confidence 22222222222 566778899999999999999999887631 12333333333322211 11222
Q ss_pred cCCCcccc------------cccchhhHHHHHHHHhhcCCCCch----hhHHHHHhhHhHHHhhHHHH-HHHHhhccCcc
Q 047826 250 TPEGKEVS------------RTGFEFTVLGLYILGLAVPHGPPL----GSALVNKFDTMISGFFLPIF-VTTSAMRLHDL 312 (746)
Q Consensus 250 ~~~~~~~~------------~~~G~~~~lgafiaGl~i~~~~~~----~~~l~~kl~~~~~~~f~PiF-F~~~G~~~d~~ 312 (746)
..-.+... ...|+|+.+|++++|+++|+..+. .+++++.+++.+..+++|+| |+..|.++|..
T Consensus 193 ~~v~~~~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFanAGv~l~~~ 272 (373)
T TIGR00773 193 CGVRRLGPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGV 272 (373)
T ss_pred cCCchhhHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeecC
Confidence 22111110 122999999999999999986433 34566666666888999999 99999999875
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 047826 313 SLHTFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFASD 376 (746)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~ 376 (746)
.+.....+ ....+++..+++|++|++..++.. +++|++-..+|++-+.-=++++.+++.+++
T Consensus 273 ~~~~~~~~--v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 273 SLNGLTSM--LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred cchhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55433233 356777788899999999888753 478999999998777777899999999985
No 19
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.43 E-value=8.6e-13 Score=122.84 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=99.6
Q ss_pred eeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccCc
Q 047826 431 QIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHWG 510 (746)
Q Consensus 431 riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 510 (746)
|||+|++++++...+++.+..+++ ..+.+++++|+++.+...... .. .......++.++.+.+...+ .
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~--~~~~~v~ll~v~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~--~ 68 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALAR--AQNGEIIPLNVIEVPNHSSPS---QL-----EVNVQRARKLLRQAERIAAS--L 68 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhh--cCCCeEEEEEEEecCCCCCcc---hh-----HHHHHHHHHHHHHHHHHhhh--c
Confidence 699999999999999999999984 456799999999976543221 00 01112345566666666544 3
Q ss_pred ceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 511 AASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 511 ~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
++.+++.+..+ .++.++||+.|+++++|+||||+|++++..+. .+|+++++|++++||||+|+
T Consensus 69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 45677766655 57999999999999999999999998765333 48999999999999999886
No 20
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.1e-11 Score=124.49 Aligned_cols=322 Identities=8% Similarity=0.036 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCcccccccccc--ccccCcccHHHHHHHHHHHHHHHHHHhhcccChHH
Q 047826 43 ATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVA--DKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISM 120 (746)
Q Consensus 43 ~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~--~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~ 120 (746)
+.+.+++..--.+-+++-+..-+---+.|+++||+++++.++. .+ .+.....++.+-+-.=.|.+++|+.-..
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn-----~d~it~ei~RvvLcvqvfava~eLPr~Y 94 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGN-----KDYITYEISRVVLCVQVFAVAMELPRAY 94 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccC-----cchhhhhhhhhhHhHHHHHHHHhccHHH
Confidence 3444444444445555666666666789999999999986531 11 2234445666777777899999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHhhhcceeeec---CC--hhHHHHHHHHHhhccHHHHHHHHhhccc---cCCchhHHHHH
Q 047826 121 VAKVGRKAWYIGILSVIAPLVALIPGSMVPS---GG--GPTGLFITPLYYMTAYPVIFCLLTHLKI---LNSELGRLAQS 192 (746)
Q Consensus 121 l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~---~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l---~~s~~g~l~ls 192 (746)
+.++++..+..-+--.++-+++ .+.+.| ++ ...+++++.+++.|++.....++.+-+. .+.++..++.+
T Consensus 95 ~l~~w~Si~vlllpVmi~gwlv---s~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~A 171 (467)
T KOG4505|consen 95 MLEHWRSIFVLLLPVMIIGWLV---SFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAA 171 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHH
Confidence 9999988765433323333333 222222 23 5889999999999996666666665443 45567888999
Q ss_pred HHhHHhHHHHHHHHHHHHHhhcCC-----Cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-ccc------
Q 047826 193 SAIVADFLSYATILFLTLSQVAYS-----SP---PKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGK-EVS------ 257 (746)
Q Consensus 193 ~a~i~D~~~~~ll~i~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~-~~~------ 257 (746)
.+..||..++.++.+..-+..... .. ...++-....+.++.+++++.|..+++..++.--++ ..-
T Consensus 172 ESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl 251 (467)
T KOG4505|consen 172 ESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVL 251 (467)
T ss_pred hcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999988866544322111 11 133445555566777788888888777666643331 110
Q ss_pred --------cccchhhHHHHHHHHhhcCCCCchhhHH-HHHhhHhHHHhhHHHHHHHHhhccCcccccch----hhhHHHH
Q 047826 258 --------RTGFEFTVLGLYILGLAVPHGPPLGSAL-VNKFDTMISGFFLPIFVTTSAMRLHDLSLHTF----NSLIWHN 324 (746)
Q Consensus 258 --------~~~G~~~~lgafiaGl~i~~~~~~~~~l-~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~----~~~~~~~ 324 (746)
...|++..+-.|.||.+++.+..+.++. ..++..++..++--.||++.|..++++.++.. ..| -.
T Consensus 252 ~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw--rl 329 (467)
T KOG4505|consen 252 ALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW--RL 329 (467)
T ss_pred HHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH--HH
Confidence 1238999999999999999886665544 34667777777778899999999998876532 345 34
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHh--CCChHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047826 325 IALAGLAALV-KFGACALLLLYW--KMHRNDAMALALIMNIKGIVEMAFYTFAS 375 (746)
Q Consensus 325 ~~~~~~~~~~-K~~~~~~~~~~~--~~~~~~~~~lg~~m~~kG~v~l~~~~~~~ 375 (746)
+++.+..++. |+-.+++.-.+- =.+|||++.+|. .+|.|.-++..+.++.
T Consensus 330 vilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 330 VILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 4444444444 343343322211 137999999998 8999988888777764
No 21
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.2e-10 Score=126.84 Aligned_cols=359 Identities=13% Similarity=0.098 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC---CChHHHHHHHHHhcCcccccccccccc-----ccCcccHHHHHHHHHHHHHHHHH
Q 047826 39 MFLIATMLIISQAFHSVLKRFG---IPIFISQIFAGLLLSRPVLQVIKVADK-----IITPEHVQLIGSMGNIGIAFFIF 110 (746)
Q Consensus 39 l~~i~~il~~a~~~~~l~~rl~---~P~iv~~Il~GiilGP~~Lg~~~~~~~-----~lfp~~~~~l~~la~lgl~~llF 110 (746)
++-...++.++.+..+++++.| +|.-+.-++.|+++|-..........+ ..|. .+.+ -.+-+--+.|
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~--~~~f---f~vLLPpiif 111 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFS--PDLF---FLVLLPPIIF 111 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEec--ccHH---HHHhhchhhh
Confidence 3344556667788899999988 999999999999999643222111111 1121 1111 2222445789
Q ss_pred HhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec--C-----C--hhHHHHHHHHHhhccHHHHHHHHhhccc
Q 047826 111 QSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS--G-----G--GPTGLFITPLYYMTAYPVIFCLLTHLKI 181 (746)
Q Consensus 111 ~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~--~-----g--~~~~l~ig~~ls~Ts~~vv~~il~el~l 181 (746)
..|.+++.+.++++.......++.|..+...++ |.++.+ + + +..++.+|+++|+|++..+..+++|++-
T Consensus 112 ~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~i--g~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v 189 (575)
T KOG1965|consen 112 NSGYSLKKKQFFRNIGSILLFAIFGTFISAVII--GAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV 189 (575)
T ss_pred cccceechhhhhhhhHHHHHhhhcceeeehhHH--hhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC
Confidence 999999999999999999999998877665442 444333 1 2 3899999999999999999999999984
Q ss_pred cCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC
Q 047826 182 LNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKA-------IQLCVYILTFIVIVMVVVRPAMLLI-ARMTPEG 253 (746)
Q Consensus 182 ~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~r~~~~~~-~~~~~~~ 253 (746)
...+=.++-+++++||.++++++..+......+.+.+.. ++.+....+.++..+++.-.+++.+ .||+|.-
T Consensus 190 -d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~l 268 (575)
T KOG1965|consen 190 -DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSL 268 (575)
T ss_pred -CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 667888999999999999999998877665443322222 2233333334444444443333333 2333332
Q ss_pred cc------------cccccchhhHHHHHHHHhhcCCC-----CchhhHHHHHhhHhHHHhhHHHHHHHHhh-ccCccccc
Q 047826 254 KE------------VSRTGFEFTVLGLYILGLAVPHG-----PPLGSALVNKFDTMISGFFLPIFVTTSAM-RLHDLSLH 315 (746)
Q Consensus 254 ~~------------~~~~~G~~~~lgafiaGl~i~~~-----~~~~~~l~~kl~~~~~~~f~PiFF~~~G~-~~d~~~l~ 315 (746)
+. ++|..|+++++..+.-|+.+++. .+..+.-.+++-....-+..-+-|.++|+ -++.....
T Consensus 269 E~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~ 348 (575)
T KOG1965|consen 269 ESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHV 348 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccee
Confidence 21 12345999999999999999864 23333344445555567777888999995 33544433
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CChHHHHHHHHHHHhHHHHHHHHHHhhh-cCC-CCChh
Q 047826 316 TFNSLIWHNIALAGLAALVKFGACALLLLYWK----------MHRNDAMALALIMNIKGIVEMAFYTFAS-DGR-YVSPN 383 (746)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~----------~~~~~~~~lg~~m~~kG~v~l~~~~~~~-~~~-~i~~~ 383 (746)
.... .++....+..+++|..-.+-.+.+.+ .+.++-..+++.-.-||.++++++.--. +.+ -.++.
T Consensus 349 ~~~~--~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~ 426 (575)
T KOG1965|consen 349 YKSL--QFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQT 426 (575)
T ss_pred eech--HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccE
Confidence 2211 23444555556677666554444432 3444455566544479999998776432 111 01223
Q ss_pred hHHHHH----HHHHHHHhhhHHHHHhhc
Q 047826 384 MFRFML----GVVIVTGSVVPILVRKLY 407 (746)
Q Consensus 384 ~~~~lv----~~~lltt~i~~~l~~~~~ 407 (746)
+++..+ +.+++-...+.|+++++-
T Consensus 427 i~tttl~vVlfT~lv~Gg~T~pml~~L~ 454 (575)
T KOG1965|consen 427 IFTTTLVVVLFTVLVFGGSTKPMLSYLM 454 (575)
T ss_pred EEEeeeeeeeeeeeeeCCccHHHHHHhc
Confidence 333333 444444445889999885
No 22
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.20 E-value=1.4e-09 Score=118.12 Aligned_cols=286 Identities=12% Similarity=0.067 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHhhcccChHHHHh---chhh---HHHHHHHHHHHHHHhhhcceeeecCChhHHHHHHHHHhhccHH
Q 047826 97 IGSMGNIGIAFFIFQSGVKMDISMVAK---VGRK---AWYIGILSVIAPLVALIPGSMVPSGGGPTGLFITPLYYMTAYP 170 (746)
Q Consensus 97 l~~la~lgl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g~~~~l~ig~~ls~Ts~~ 170 (746)
...+.+.-+.+|.|.+|+|+.-+.+.. +.|| ...-++.|+++|.++ =..+.. +....--+|+-+ .|+.+
T Consensus 69 ~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI---Y~~~n~-~~~~~~GWgIPm-ATDIA 143 (438)
T PRK14856 69 HNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI---YFFLNA-DTPSQHGFGIPM-ATDIA 143 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH---Hhheec-CCCccCcccccc-HHHHH
Confidence 334445555689999999998766432 2233 345678899999887 222222 111111111111 12222
Q ss_pred HHHHHHhhcc-ccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 171 VIFCLLTHLK-ILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARM 249 (746)
Q Consensus 171 vv~~il~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~ 249 (746)
-...++.=+| ..+..+...+++-|++||+.++++++++++- .....+..++..++.++ ++.+|
T Consensus 144 FAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~------~i~~~~L~~a~~~~~~l----------~~ln~ 207 (438)
T PRK14856 144 FALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTT------NLKFAWLLGALGVVLVL----------AVLNR 207 (438)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC------CCcHHHHHHHHHHHHHH----------HHHHH
Confidence 2222222222 2466778889999999999999999887631 13344444443333222 11222
Q ss_pred cCCCcccc-------cc-----cchhhHHHHHHHHhhcCCCCch------------------------------------
Q 047826 250 TPEGKEVS-------RT-----GFEFTVLGLYILGLAVPHGPPL------------------------------------ 281 (746)
Q Consensus 250 ~~~~~~~~-------~~-----~G~~~~lgafiaGl~i~~~~~~------------------------------------ 281 (746)
..-.+... -+ -|+|+.+.+.+.|+++|..++.
T Consensus 208 ~~v~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (438)
T PRK14856 208 LNVRSLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQQEILHSIEE 287 (438)
T ss_pred cCCccccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccchhhhhhhhhh
Confidence 21111110 01 1999999999999999964322
Q ss_pred --------hhHHHHHhhHhHHHhhHHHH-HHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 047826 282 --------GSALVNKFDTMISGFFLPIF-VTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYW------ 346 (746)
Q Consensus 282 --------~~~l~~kl~~~~~~~f~PiF-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~------ 346 (746)
.+++++.+.+.+..+.+|+| |...|..++....... . .....+++..+++|.+|.+..++..
T Consensus 288 ~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~-~--pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a 364 (438)
T PRK14856 288 KASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEV-D--KVLLGVILGLCLGKPLGIFLITFISEKLKIT 364 (438)
T ss_pred cccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhcc-C--cHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Confidence 13466677777888999999 7888999985432211 1 2245566667789999988887753
Q ss_pred ----CCChHHHHHHHHHHHhHHHHHHHHHHhhhcC--CCCChhhHHHHHHHHHHHHhhhHHHHHhh
Q 047826 347 ----KMHRNDAMALALIMNIKGIVEMAFYTFASDG--RYVSPNMFRFMLGVVIVTGSVVPILVRKL 406 (746)
Q Consensus 347 ----~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~--~~i~~~~~~~lv~~~lltt~i~~~l~~~~ 406 (746)
+++|++-+.+|++-+.-=++++.+++.+++. .-.-++.=..+++.++++.+++..+.++.
T Consensus 365 ~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~~ 430 (438)
T PRK14856 365 ARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFAL 430 (438)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999987777778999999999843 32233344444555556666665555543
No 23
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.17 E-value=3.6e-09 Score=113.28 Aligned_cols=283 Identities=13% Similarity=0.057 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhhcccChHHHHh---chhh---HHHHHHHHHHHHHHhhhcceeeecCC-hhHHHHHHHHHhhccHHHH
Q 047826 100 MGNIGIAFFIFQSGVKMDISMVAK---VGRK---AWYIGILSVIAPLVALIPGSMVPSGG-GPTGLFITPLYYMTAYPVI 172 (746)
Q Consensus 100 la~lgl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g-~~~~l~ig~~ls~Ts~~vv 172 (746)
+.+-=+.+|.|.+|+|+.-+.+.. +.|| ...-++.|+++|.++ =.++.. | +...--+|+-+ .|+.+-.
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlI---y~~~n~-g~~~~~~GWgIPm-ATDIAFA 137 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALI---YAAFNY-NNPETLRGWAIPA-ATDIAFA 137 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH---Hheeec-CCCcccCcccccc-HHHHHHH
Confidence 344445588999999998766532 2233 345678899999887 333222 1 10011111111 1222222
Q ss_pred HHHHhhcc-ccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047826 173 FCLLTHLK-ILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTP 251 (746)
Q Consensus 173 ~~il~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 251 (746)
.-++.=+| ..+..+....++-|++||+.++++++++++- .....+...+..++.++ ++.+|..
T Consensus 138 lgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt~------~i~~~~L~~a~~~~~~l----------~~ln~~~ 201 (389)
T PRK09560 138 LGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYTS------DLSLPALALAAIAIAVL----------FLLNRLG 201 (389)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecCC------CCCHHHHHHHHHHHHHH----------HHHHHcC
Confidence 22222222 2466678889999999999999999887631 12334443333322222 1112221
Q ss_pred CCcccc-------cc-----cchhhHHHHHHHHhhcCCCCch------hhHHHHHhhHhHHHhhHHHH-HHHHhhccCcc
Q 047826 252 EGKEVS-------RT-----GFEFTVLGLYILGLAVPHGPPL------GSALVNKFDTMISGFFLPIF-VTTSAMRLHDL 312 (746)
Q Consensus 252 ~~~~~~-------~~-----~G~~~~lgafiaGl~i~~~~~~------~~~l~~kl~~~~~~~f~PiF-F~~~G~~~d~~ 312 (746)
-.+... -+ -|+|+.++..++|+++|..++. .+++++++++.+..+.+|+| |...|..++-.
T Consensus 202 v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaNAGV~l~~~ 281 (389)
T PRK09560 202 VTKLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFANAGVSLAGI 281 (389)
T ss_pred CccchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhcCCeeecCC
Confidence 111110 11 1999999999999999974322 35788899999888889999 77889888432
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhc-CCCCC
Q 047826 313 SLHTFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFASD-GRYVS 381 (746)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~-~~~i~ 381 (746)
.+..... .....+++..+++|++|.+..++.. +++|++-..+|.+-+.-=++++.+++.++. ..-..
T Consensus 282 ~~~~~~~--pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~~~~~~~ 359 (389)
T PRK09560 282 SLSSLTS--PVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLAFGASEELL 359 (389)
T ss_pred cHHhccC--cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhh
Confidence 2322111 2244566667789999988887753 478999999998777777899999999984 21122
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHh
Q 047826 382 PNMFRFMLGVVIVTGSVVPILVRK 405 (746)
Q Consensus 382 ~~~~~~lv~~~lltt~i~~~l~~~ 405 (746)
++.-..+++.++++.+++..+.+.
T Consensus 360 ~~aKigIL~~S~~aai~g~~~l~~ 383 (389)
T PRK09560 360 TEARLGILLGSLLSAILGYLLLRL 383 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233333334444444444444443
No 24
>PRK15456 universal stress protein UspG; Provisional
Probab=99.11 E-value=3.2e-10 Score=107.42 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=88.7
Q ss_pred ceeEEEecCCC--ChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccc
Q 047826 430 LQIVSCIHVPS--NIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGL 507 (746)
Q Consensus 430 ~riLv~i~~~~--~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 507 (746)
-|||+|++.++ +...+++.+..++. .. .+++++|+++-.... .. ...............++..+.++++.+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~--~~-~~l~llhv~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQ--DD-GVIHLLHVLPGSASL-SL--HRFAADVRRFEEHLQHEAEERLQTMVSH 76 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHh--cC-CeEEEEEEecCcccc-cc--cccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 37999999984 89999999888873 33 489999998743211 10 0000000000011112222333333322
Q ss_pred cC-cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 508 HW-GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 508 ~~-~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.. ..+.+++.+. ..+..+.|++.|+++++||||||.|++. ..+. .+||+.++|++++||||.|+
T Consensus 77 ~~~~~~~v~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 77 FTIDPSRIKQHVR---FGSVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred hCCCCcceEEEEc---CCChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEEe
Confidence 11 3456666554 4689999999999999999999999863 4333 38999999999999999875
No 25
>PRK15005 universal stress protein F; Provisional
Probab=99.11 E-value=4.4e-10 Score=106.50 Aligned_cols=138 Identities=15% Similarity=0.096 Sum_probs=87.5
Q ss_pred ceeEEEecCCCC--hhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccc
Q 047826 430 LQIVSCIHVPSN--IISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGL 507 (746)
Q Consensus 430 ~riLv~i~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 507 (746)
-|||+|++.+++ ...+++.+..++ +....+++++|+++............. ..........++..+.++++.+.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la--~~~~~~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~ 78 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEA--KIDDAEVHFLTVIPSLPYYASLGLAYS--AELPAMDDLKAEAKSQLEEIIKK 78 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHH--hccCCeEEEEEEEccCccccccccccc--ccchHHHHHHHHHHHHHHHHHHH
Confidence 369999999998 468888888777 445578999999985332111000000 00000001112222334443332
Q ss_pred cC-cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 508 HW-GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 508 ~~-~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.. .+++++..+. ..+..+.|++.|+++++||||||.|++ +..+. .+||+.++|++++||||.++
T Consensus 79 ~~~~~~~~~~~v~---~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~~~------llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 79 FKLPTDRVHVHVE---EGSPKDRILELAKKIPADMIIIASHRP-DITTY------LLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred hCCCCCceEEEEe---CCCHHHHHHHHHHHcCCCEEEEeCCCC-Cchhe------eecchHHHHHHhCCCCEEEe
Confidence 21 3345555444 478899999999999999999998843 33333 48999999999999999875
No 26
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.09 E-value=9.4e-09 Score=109.85 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHhhcccChHHHHh---chhh---HHHHHHHHHHHHHHhhhcceeeecCC-hhHHHHHHHHHhhccHHH
Q 047826 99 SMGNIGIAFFIFQSGVKMDISMVAK---VGRK---AWYIGILSVIAPLVALIPGSMVPSGG-GPTGLFITPLYYMTAYPV 171 (746)
Q Consensus 99 ~la~lgl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g-~~~~l~ig~~ls~Ts~~v 171 (746)
.+.+-=+.+|.|.+|+|+.-+.+.. +.|| ...-++.|+++|.++ =.++.. | +...--+|+-+ .|+.+-
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAli---y~~~n~-~~~~~~~GWaIP~-ATDIAF 136 (388)
T PRK09561 62 WINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALI---YLLFNY-ADPVTREGWAIPA-ATDIAF 136 (388)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHH---Hhheec-CCCcccCcccccc-HHHHHH
Confidence 3344445588999999998776532 2233 345678899999887 222221 1 00011111111 122222
Q ss_pred HHHHHhhcc-ccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047826 172 IFCLLTHLK-ILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMT 250 (746)
Q Consensus 172 v~~il~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~ 250 (746)
..-++.=+| ..+..+....++-|++||+.++++++++++- ...+.+......++.++ ++.+|.
T Consensus 137 algvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~------~i~~~~L~~a~~~~~~l----------~~ln~~ 200 (388)
T PRK09561 137 ALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYTS------DLSMVSLGVAAVAIAVL----------AVLNLC 200 (388)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC------CccHHHHHHHHHHHHHH----------HHHHHc
Confidence 222222222 2466678889999999999999999887631 12333333333222222 111222
Q ss_pred CCCcccc-------cc-----cchhhHHHHHHHHhhcCCCCch----hhHHHHHhhHhHHHhhHHHH-HHHHhhccCccc
Q 047826 251 PEGKEVS-------RT-----GFEFTVLGLYILGLAVPHGPPL----GSALVNKFDTMISGFFLPIF-VTTSAMRLHDLS 313 (746)
Q Consensus 251 ~~~~~~~-------~~-----~G~~~~lgafiaGl~i~~~~~~----~~~l~~kl~~~~~~~f~PiF-F~~~G~~~d~~~ 313 (746)
.-.+... -+ -|+|+.++..+.|+++|...+. -+++++++.+.+..+.+|+| |...|..++-..
T Consensus 201 ~v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~ 280 (388)
T PRK09561 201 GVRRTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANAGVSLQGVT 280 (388)
T ss_pred CCccchHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcCCeeeccCc
Confidence 1111110 01 1999999999999999974221 36788899999988899999 778888883222
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 047826 314 LHTFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFASD 376 (746)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~ 376 (746)
+..... .....+++..+++|.+|.+..++.. +++|++-..+|++-+.-=++++.+++.+++
T Consensus 281 ~~~~~~--pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 281 LDGLTS--PLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHhhcC--cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 221111 2234556667789999988887653 478999999998777777899999999985
No 27
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=2.5e-08 Score=107.99 Aligned_cols=278 Identities=14% Similarity=0.056 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhhcccChHHHHh---chhh---HHHHHHHHHHHHHHhhhcceeeecCChhHHHHHHHHHhhccHHHHH
Q 047826 100 MGNIGIAFFIFQSGVKMDISMVAK---VGRK---AWYIGILSVIAPLVALIPGSMVPSGGGPTGLFITPLYYMTAYPVIF 173 (746)
Q Consensus 100 la~lgl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g~~~~l~ig~~ls~Ts~~vv~ 173 (746)
+.+--+.+|.|.+|+|+.-+.+.. +.|| ...-++.|+++|.++ =.++.. |....--+|+-+ .|+.+-..
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI---y~~~n~-~~~~~~GWgIPm-ATDIAFAl 141 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL---YTALNA-GGPGASGWGVPM-ATDIAFAL 141 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH---Hheeec-CCCccCcccccc-HHHHHHHH
Confidence 344445588999999998776532 2233 345678899999887 333222 211111111111 12222222
Q ss_pred HHHhhcc-ccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047826 174 CLLTHLK-ILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPE 252 (746)
Q Consensus 174 ~il~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~ 252 (746)
.++.=+| ..+..+...+++-|++||+.++++++++++- + ....+..++.+++.++ ++.+|..-
T Consensus 142 gvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~---~---i~~~~L~~a~~~~~~l----------~~ln~~~v 205 (423)
T PRK14855 142 GVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTS---G---LNLLALLLAALTWALA----------LLAGRLGV 205 (423)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecCC---C---CCHHHHHHHHHHHHHH----------HHHHHcCC
Confidence 2222232 2455678889999999999999999887631 1 2333443333322221 11222111
Q ss_pred Ccccc-------cc-----cchhhHHHHHHHHhhcCCCCc-h------------------------------------hh
Q 047826 253 GKEVS-------RT-----GFEFTVLGLYILGLAVPHGPP-L------------------------------------GS 283 (746)
Q Consensus 253 ~~~~~-------~~-----~G~~~~lgafiaGl~i~~~~~-~------------------------------------~~ 283 (746)
.+..- -+ -|+|+.++..+.|+++|..++ . .+
T Consensus 206 ~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~ 285 (423)
T PRK14855 206 TSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPLH 285 (423)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhhhhccccCCHHH
Confidence 11100 01 199999999999999997411 1 24
Q ss_pred HHHHHhhHhHHHhhHHHH-HHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHH
Q 047826 284 ALVNKFDTMISGFFLPIF-VTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRND 352 (746)
Q Consensus 284 ~l~~kl~~~~~~~f~PiF-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~ 352 (746)
++++.+.+.+..+.+|+| |+..|..++-.. ... ....+++..+++|.+|.+..++.. +++|++
T Consensus 286 rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p-----v~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~ 359 (423)
T PRK14855 286 RLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT-----VSLGVFLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLH 359 (423)
T ss_pred HHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc-----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 567777888888899998 778899885333 222 234555667789999988887753 478999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHH
Q 047826 353 AMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVR 404 (746)
Q Consensus 353 ~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~ 404 (746)
-..+|++-+.-=++++.+++.+++..-.-++.=..+++.++++.+++..+.+
T Consensus 360 l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~ 411 (423)
T PRK14855 360 MLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLW 411 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997777778999999999953322233333444555555555544444
No 28
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.05 E-value=9.5e-10 Score=104.54 Aligned_cols=140 Identities=10% Similarity=0.109 Sum_probs=91.4
Q ss_pred eeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeec-ccccc-cccccccchHHHHHHHHhcccc
Q 047826 431 QIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSH-QSKNK-NIYTYCYSENVILSFKKFGGLH 508 (746)
Q Consensus 431 riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~-~~~~~-~~~~~~~~~~i~~~f~~~~~~~ 508 (746)
+||+|++.+++...+++.+..++. ....+++++|+++.+...... ... ...+. ........++.++.+.+..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~--~~~~~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLA--TKGQTIVLVHVHPPITSIPSS-SGKLEVASAYKQEEDKEAKELLLPYRCFCSR- 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhcc--CCCCcEEEEEeccCcccCCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 589999999999999999999884 345789999998754321100 000 00000 000011223333333332222
Q ss_pred CcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhH-HHHHHHhccCC--CceEEEec
Q 047826 509 WGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVR-NLNLCVLEKAP--CSVGILID 583 (746)
Q Consensus 509 ~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~-~~n~~Vl~~Ap--csVgilvd 583 (746)
.++.++..+... .+..+.|++.|++.++|+||||.|++.+....+ +| ++.++|++++| |||.|+.|
T Consensus 77 -~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 77 -KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred -cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEEEEeC
Confidence 345555554422 588999999999999999999999987654432 55 68999999999 99987643
No 29
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.04 E-value=3.2e-08 Score=105.46 Aligned_cols=283 Identities=11% Similarity=0.083 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhhcccChHHHHh---chhh---HHHHHHHHHHHHHHhhhcceeeecCChhHHHHHHHHHh-hccHHHH
Q 047826 100 MGNIGIAFFIFQSGVKMDISMVAK---VGRK---AWYIGILSVIAPLVALIPGSMVPSGGGPTGLFITPLYY-MTAYPVI 172 (746)
Q Consensus 100 la~lgl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g~~~~l~ig~~ls-~Ts~~vv 172 (746)
+.+-=+.+|.|.+|+|++-+.+.. +.|| ...-++.|+++|.++ =.++.. ++...--+|+-++ -++|.+-
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlI---y~~~n~-~~~~~~GW~IP~ATDIAFAlg 135 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLI---YLSINH-DIKVINGWAIPSATDIAFTLG 135 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH---HHhhcc-CCcccCccccccHHHHHHHHH
Confidence 344445588999999998765422 3333 345678889999887 222221 1000011111111 1222222
Q ss_pred HHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047826 173 FCLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPE 252 (746)
Q Consensus 173 ~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~ 252 (746)
...+-..+ .+..+.-..++-|++||+.++++++++++- + ..+.+......++.++ ... .|+..-
T Consensus 136 vLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt~---~---i~~~~L~~A~~~~~~l-~~~--------nr~~~v 199 (383)
T PRK14854 136 ILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYTK---S---LSLLSLSLGTLFILAM-IIC--------NRIFKI 199 (383)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecCC---C---ccHHHHHHHHHHHHHH-HHH--------HHhcCC
Confidence 22222222 466677888899999999999999887631 1 2233333322222111 111 111011
Q ss_pred Ccccc-------cc-----cchhhHHHHHHHHhhcCCCCc----hhhHHHHHhhHhHHHhhHHHH-HHHHhhccCccccc
Q 047826 253 GKEVS-------RT-----GFEFTVLGLYILGLAVPHGPP----LGSALVNKFDTMISGFFLPIF-VTTSAMRLHDLSLH 315 (746)
Q Consensus 253 ~~~~~-------~~-----~G~~~~lgafiaGl~i~~~~~----~~~~l~~kl~~~~~~~f~PiF-F~~~G~~~d~~~l~ 315 (746)
.+... -+ -|+|+.++..+.|+++|...+ -.+++++++++.+..+.+|+| |+..|..++-..+.
T Consensus 200 ~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~ 279 (383)
T PRK14854 200 NRSSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGISFSGISFS 279 (383)
T ss_pred ceehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCeeeccCcHH
Confidence 11000 01 199999999999999997421 135788888899999999999 77889888422222
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhH
Q 047826 316 TFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMF 385 (746)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~ 385 (746)
.... .....+++..+++|.+|.+..++.. +++|++-..+|++-+.-=++++.+++.+++..-..++.-
T Consensus 280 ~~~~--pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~~~~~~~~aK 357 (383)
T PRK14854 280 ILFE--PITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFNDTHLLNAIK 357 (383)
T ss_pred hhcC--cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHH
Confidence 1111 2244566667789999988887653 478999999998777777899999999995321222333
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 047826 386 RFMLGVVIVTGSVVPILVR 404 (746)
Q Consensus 386 ~~lv~~~lltt~i~~~l~~ 404 (746)
..+++.++++.+++..+.+
T Consensus 358 igIL~gS~~aai~G~~~l~ 376 (383)
T PRK14854 358 IGVVVGSVLSGFFGYIVLR 376 (383)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443443
No 30
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.97 E-value=2.2e-09 Score=98.98 Aligned_cols=122 Identities=14% Similarity=0.024 Sum_probs=88.6
Q ss_pred eeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccCc
Q 047826 431 QIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHWG 510 (746)
Q Consensus 431 riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 510 (746)
|||+|+++++....+++.+..++. +.+.+++++|+++-... . . ....++.++.+.+..++ .
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~~--~----~---------~~~~~~~l~~~~~~~~~--~ 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLAD--RLKAPWYVVYVETPRLN--R----L---------SEAERRRLAEALRLAEE--L 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHH--HhCCCEEEEEEecCccc--c----C---------CHHHHHHHHHHHHHHHH--c
Confidence 699999999999999999999884 45678999999762211 0 0 11223444444444433 1
Q ss_pred ceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccC-CCceEEE
Q 047826 511 AASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKA-PCSVGIL 581 (746)
Q Consensus 511 ~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~A-pcsVgil 581 (746)
++.. .+..+ .+..+.|++.+++.++|+|+||+|++...... .+|+..++|+++| ||+|.|+
T Consensus 62 ~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~------~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 62 GAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL------FRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH------hcccHHHHHHHhCCCCeEEEe
Confidence 2332 22333 67899999999999999999999988665443 4899999999999 9998775
No 31
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.94 E-value=3.1e-09 Score=100.80 Aligned_cols=135 Identities=7% Similarity=0.005 Sum_probs=85.3
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.+++...+++.+..++ +....+++++|+.+-............ .........++..+.++++.+.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~-- 76 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMA--RPYNAKVSLIHVDVNYSDLYTGLIDVN---LGDMQKRISEETHHALTELSTN-- 76 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHH--HhhCCEEEEEEEccChhhhhhhhhhcc---hHHHHHHHHHHHHHHHHHHHHh--
Confidence 369999999999999999988887 334578999998421111100000000 0000011122333444555443
Q ss_pred cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEe
Q 047826 510 GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILI 582 (746)
Q Consensus 510 ~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilv 582 (746)
.++.+...... ..+.++.|++.|++.++||||||.|++. . . .++|+.++|+++|||||.|+.
T Consensus 77 ~~~~~~~~~~~--~G~p~~~I~~~a~~~~~DLIV~Gs~~~~-----~---~-~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 77 AGYPITETLSG--SGDLGQVLVDAIKKYDMDLVVCGHHQDF-----W---S-KLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCCCceEEEEE--ecCHHHHHHHHHHHhCCCEEEEeCcccH-----H---H-HHHHHHHHHHhhCCCCEEEec
Confidence 22333221111 3788999999999999999999999631 1 1 267999999999999998874
No 32
>PRK09982 universal stress protein UspD; Provisional
Probab=98.94 E-value=2.3e-09 Score=101.67 Aligned_cols=134 Identities=8% Similarity=-0.008 Sum_probs=84.3
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.+++...+++.+..++ ++.+.+++++|+++......+....... +. ......++..+.++++.+...
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~ 78 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGIYFPAT--ED-ILQLLKNKSDNKLYKLTKNIQ 78 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhhhccch--HH-HHHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999999888 5567899999998743211110000000 00 000111112223333332211
Q ss_pred cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 510 GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 510 ~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
...++..+. ..+..+.|++.|++.++||||||.| +.+.. ..+ ++.++|+++++|||.|+
T Consensus 79 -~~~~~~~v~---~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 79 -WPKTKLRIE---RGEMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLM-PAYRGMINKMSADLLIV 137 (142)
T ss_pred -CCcceEEEE---ecCHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHH-HHHHHHHhcCCCCEEEe
Confidence 122333333 3789999999999999999999965 43322 124 48999999999999886
No 33
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.90 E-value=2.1e-09 Score=114.77 Aligned_cols=265 Identities=14% Similarity=0.110 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhhcccChHHHHh---chhh---HHHHHHHHHHHHHHhhhcceeeecCC-hhHHHHHHHHHhhccH
Q 047826 97 IGSMGNIGIAFFIFQSGVKMDISMVAK---VGRK---AWYIGILSVIAPLVALIPGSMVPSGG-GPTGLFITPLYYMTAY 169 (746)
Q Consensus 97 l~~la~lgl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g-~~~~l~ig~~ls~Ts~ 169 (746)
...+.+-=+.+|.|.+|+|+.-+.+.. +.|| ...-++.|+++|.++ =.++. .| +...--+|+- ..|+.
T Consensus 56 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI---yl~~n-~~~~~~~~GW~IP-~ATDI 130 (378)
T PF06965_consen 56 HHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI---YLAFN-AGGPEAAHGWAIP-MATDI 130 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH---HGGG---SSTTHHHHTSSS-S---H
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH---Hheee-cCCCCcCceEEec-ccccH
Confidence 334444445689999999998776532 2233 344577888888877 11111 12 1111111111 12333
Q ss_pred HHHHHHHhhcc-ccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 170 PVIFCLLTHLK-ILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIAR 248 (746)
Q Consensus 170 ~vv~~il~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~ 248 (746)
+-..-++.=++ ..+..+....++-|++||+.++++++++++- + ....+......++.++ +..+
T Consensus 131 AFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~---~---i~~~~L~~a~~~~~~l----------~~l~ 194 (378)
T PF06965_consen 131 AFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD---G---ISLLWLLLAAAALLLL----------FVLN 194 (378)
T ss_dssp HHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC---C---CCHHHHHHHHHHHHHH----------HHHH
Confidence 33333443333 2456678899999999999999999988741 1 2233333332222211 1122
Q ss_pred HcCCCcccc-------c-----ccchhhHHHHHHHHhhcCCCCchh--------hHHHHHhhHhHHHhhHHHH-HHHHhh
Q 047826 249 MTPEGKEVS-------R-----TGFEFTVLGLYILGLAVPHGPPLG--------SALVNKFDTMISGFFLPIF-VTTSAM 307 (746)
Q Consensus 249 ~~~~~~~~~-------~-----~~G~~~~lgafiaGl~i~~~~~~~--------~~l~~kl~~~~~~~f~PiF-F~~~G~ 307 (746)
|....+..- - .-|+|+.++..+.|+++|..++.. +++++++++.+..+.+|+| |...|.
T Consensus 195 r~~v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV 274 (378)
T PF06965_consen 195 RLGVRSLWPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFALANAGV 274 (378)
T ss_dssp HTT---THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHHHHS--
T ss_pred HCCCceehHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhheeCce
Confidence 221111100 0 119999999999999999865442 4788888898888999999 788899
Q ss_pred ccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhcC
Q 047826 308 RLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFASDG 377 (746)
Q Consensus 308 ~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~ 377 (746)
.++-..+..... .....+++..+++|.+|.+..++.. +++|++-..+|++-+.-=++++.+++.+++.
T Consensus 275 ~l~~~~~~~~~~--pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 275 SLSGSSLGDLTS--PVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp --SSS---THHH--HSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHHHHHSTT
T ss_pred EEecCchHhhhC--hHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 998655432211 2234455566789999988776543 4788998889987777778999999999987
Q ss_pred CCCChhh
Q 047826 378 RYVSPNM 384 (746)
Q Consensus 378 ~~i~~~~ 384 (746)
....++.
T Consensus 353 ~~~~~~a 359 (378)
T PF06965_consen 353 PALQNAA 359 (378)
T ss_dssp -SSHHHH
T ss_pred hhhhhHH
Confidence 4333333
No 34
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.87 E-value=2.4e-09 Score=99.45 Aligned_cols=134 Identities=17% Similarity=0.144 Sum_probs=88.3
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHH---Hhcc
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFK---KFGG 506 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~---~~~~ 506 (746)
-|||+|++++++...+++.+..++ +....+++++|+++............. .. ....+....... ....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la--~~~~~~i~~l~v~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~ 74 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELA--KRSGAEITLLHVIPPPPQYSFSAAEDE--ES----EEEAEEEEQARQAEAEEAE 74 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEESCHCHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH--HhhCCeEEEEEeecccccccccccccc--cc----ccccchhhhhhhHHHHHHh
Confidence 379999999999999999988887 445689999999996654322110000 00 000000000000 1111
Q ss_pred ccCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 507 LHWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 507 ~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.. ........ ..+ .+..+.|++.+++.++|+||||.|++....+.+ +|++.+++++++||||.|+
T Consensus 75 ~~-~~~~~~~~-~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 75 AE-GGIVIEVV-IES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HH-TTSEEEEE-EEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred hh-ccceeEEE-EEe--eccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 10 12222222 223 799999999999999999999999965555443 8999999999999999886
No 35
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.87 E-value=3.9e-07 Score=93.66 Aligned_cols=275 Identities=15% Similarity=0.119 Sum_probs=163.2
Q ss_pred HHHHHHhhcccChHHHHhc---hhh---HHHHHHHHHHHHHHhhhcceeeecCChhHHHHHHHHH-hhccHHHHHHHHhh
Q 047826 106 AFFIFQSGVKMDISMVAKV---GRK---AWYIGILSVIAPLVALIPGSMVPSGGGPTGLFITPLY-YMTAYPVIFCLLTH 178 (746)
Q Consensus 106 ~~llF~~Gle~d~~~l~~~---~~~---~~~i~~~~~~~p~~l~~~~~~~~~~g~~~~l~ig~~l-s~Ts~~vv~~il~e 178 (746)
.+|.+.+|+|++-+.+..+ +++ ...-++.|++.|-++ =.++-. +.+ ...=|.+. +.|+.+-...++.=
T Consensus 72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli---y~~~n~-~~p-~~~~GWaIP~ATDiAFAlGvlaL 146 (390)
T COG3004 72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI---YLALNA-GDP-ATLEGWAIPMATDIAFALGVLAL 146 (390)
T ss_pred HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH---hheeec-CCh-hhhcCcCcccHHHHHHHHHHHHH
Confidence 4677899999988776433 333 344567788888777 222222 100 00001111 12333323333333
Q ss_pred cc-ccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q 047826 179 LK-ILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVM-----------VVVRPAMLLI 246 (746)
Q Consensus 179 l~-l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~r~~~~~~ 246 (746)
++ ..++.+.-..++-|++||+-+++++++..+- + .+..+...+.++..++.. |..--+..|+
T Consensus 147 LG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~---~---Ls~~al~~a~~~i~vL~~lN~~~v~~l~~Y~~~gviLW~ 220 (390)
T COG3004 147 LGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTT---D---LSMAALGIAALAIAVLAVLNRLGVRRLSPYLLVGVILWI 220 (390)
T ss_pred hcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcC---C---ccHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 32 3577788889999999999999998887631 1 222222222221111110 0000011121
Q ss_pred HHHcCCCcccccccchhhHHHHHHHHhhcCCCCc----hhhHHHHHhhHhHHHhhHHHH-HHHHhhccC---cccccchh
Q 047826 247 ARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPP----LGSALVNKFDTMISGFFLPIF-VTTSAMRLH---DLSLHTFN 318 (746)
Q Consensus 247 ~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~----~~~~l~~kl~~~~~~~f~PiF-F~~~G~~~d---~~~l~~~~ 318 (746)
.-. .-|+|..+...+.|+++|-... --+++++.+.+.+..+.+|+| |...|..++ .+.+.+.
T Consensus 221 ~vl---------kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s~- 290 (390)
T COG3004 221 AVL---------KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSP- 290 (390)
T ss_pred HHH---------HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCcccccccccccccc-
Confidence 111 1199999999999999996432 235677788888888999999 778888886 4444432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhcCC-CCChhhHHH
Q 047826 319 SLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFASDGR-YVSPNMFRF 387 (746)
Q Consensus 319 ~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~-~i~~~~~~~ 387 (746)
....++...+++|.+|.+..++.. +.+|++-..++++.+.-=++++.+...+++.. ......--.
T Consensus 291 ----l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~~~~~~~~~klg 366 (390)
T COG3004 291 ----LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSEDELQTAAKLG 366 (390)
T ss_pred ----hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 245566677899999988887753 57899999999877777788999999988663 232233333
Q ss_pred HHHHHHHHHhhhHHHHHh
Q 047826 388 MLGVVIVTGSVVPILVRK 405 (746)
Q Consensus 388 lv~~~lltt~i~~~l~~~ 405 (746)
+...+.++.+++-...+.
T Consensus 367 IL~gS~~Sai~G~~~L~~ 384 (390)
T COG3004 367 ILVGSFISAILGYSYLRL 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444433443
No 36
>PRK10116 universal stress protein UspC; Provisional
Probab=98.76 E-value=3.7e-08 Score=93.05 Aligned_cols=137 Identities=9% Similarity=-0.015 Sum_probs=88.2
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||++++.+++...+++.+..++ ++...+++++|+++.+...... ... ..........++..+.++++.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~~~~~~-- 75 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIA--RPVNGKISLITLASDPEMYNQF--AAP--MLEDLRSVMQEETQSFLDKLIQD-- 75 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHH--HHhCCEEEEEEEccCcccchhh--hHH--HHHHHHHHHHHHHHHHHHHHHHh--
Confidence 479999999999999999999887 4445789999998653211000 000 00000011112223344444443
Q ss_pred cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecC
Q 047826 510 GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDH 584 (746)
Q Consensus 510 ~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr 584 (746)
.++....... ...+..+.|++.|+++++||||+|.|++.+.+. +.+..++|++++||||.|+...
T Consensus 76 ~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~~~ 140 (142)
T PRK10116 76 ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVPLT 140 (142)
T ss_pred cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEeCC
Confidence 2333221111 258899999999999999999999998754332 2367899999999999888543
No 37
>PRK11175 universal stress protein UspE; Provisional
Probab=98.69 E-value=5.1e-08 Score=104.65 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=89.6
Q ss_pred cceeEEEecCCCCh-------hhHHHHHHhhCCCCCC-CcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHH
Q 047826 429 ELQIVSCIHVPSNI-------ISAINLLSISSPTNES-PMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILS 500 (746)
Q Consensus 429 e~riLv~i~~~~~~-------~~li~l~~~~~~~~~s-p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (746)
.-|||+|++.++.. ..+++.+..++. .. ..+++++|+.+.+........... ..........++..+.
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~--~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 227 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAE--QLNHAEVHLVNAYPVTPINIAIELPEF--DPSVYNDAIRGQHLLA 227 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHh--hCcCCceEEEEEecCcchhcccccccc--chhhHHHHHHHHHHHH
Confidence 35799999987654 457888877763 23 468999999875432110000000 0000000111223334
Q ss_pred HHHhccccCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEE
Q 047826 501 FKKFGGLHWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGI 580 (746)
Q Consensus 501 f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgi 580 (746)
++++.+.. ++........ ..+..+.|++.|+++++|+||||.|++.+..+.+ +|+..++|++++||||.+
T Consensus 228 l~~~~~~~--~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~~pVLv 297 (305)
T PRK11175 228 MKALRQKF--GIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLNCDLLA 297 (305)
T ss_pred HHHHHHHh--CCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCCCCEEE
Confidence 45554432 2222111112 3678899999999999999999999987766554 899999999999999998
Q ss_pred EecCC
Q 047826 581 LIDHG 585 (746)
Q Consensus 581 lvdr~ 585 (746)
++.++
T Consensus 298 v~~~~ 302 (305)
T PRK11175 298 IKPDG 302 (305)
T ss_pred EcCCC
Confidence 86654
No 38
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.65 E-value=1.2e-07 Score=86.81 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=88.5
Q ss_pred eeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccCc
Q 047826 431 QIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHWG 510 (746)
Q Consensus 431 riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 510 (746)
|||+|+++++....+++.+..++. ....+++++|+.+-.+.... ... .......++.++.+...... .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~--~~~~~i~~l~v~~~~~~~~~---~~~-----~~~~~~~~~~l~~~~~~~~~--~ 68 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLAR--RLGAELVLLHVVDPPPSSAA---ELA-----ELLEEEARALLEALREALAE--A 68 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCCCCcch---hHH-----HHHHHHHHHHHHHHHHHHhc--C
Confidence 689999999999999999999984 35688999999774433211 000 00111233444444443222 3
Q ss_pred ceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEE
Q 047826 511 AASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGI 580 (746)
Q Consensus 511 ~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgi 580 (746)
++.++..... .+..++|++.+++.++|++|+|++++....+. .+++..+++++++||||.+
T Consensus 69 ~~~~~~~~~~---~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 69 GVKVETVVLE---GDPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred CCceEEEEec---CCCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEe
Confidence 4566555443 34489999999999999999999887543222 3788899999999999865
No 39
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.52 E-value=1.1e-06 Score=83.35 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=83.3
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCC------------chhhhhHHHHHHhcccC---CCeE
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDV------------DWETILDSEVLRGVKNS---EYIR 668 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~------------~~~~~~d~~~i~~~~~~---~~v~ 668 (746)
+|++++.|.+..+.|+++|.++|+..+.+++++|++++...... +..++..++.++++... ..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQ 80 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 48999999999999999999999999999999999865322111 01112233344444321 1344
Q ss_pred EEEEEecC---hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccc-hhhhhhhcCCCCCc--ccEEEEEE
Q 047826 669 YVKHVVKD---GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELG-ILGDLLASKDLGGK--CSVLVMQQ 742 (746)
Q Consensus 669 y~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG-~igd~las~~~~~~--~svLvvqq 742 (746)
+....++. .+++++.+++. +.|+|++|+|+. .|+..+ -+| .+.+.+..+ ++ |+|||||.
T Consensus 81 ~~~~~~~g~~~~~~I~~~a~~~--~~dlIV~Gs~g~------~~l~~~----~~gssva~~Vi~~---a~~~c~Vlvv~~ 145 (146)
T cd01989 81 CEDVVLEDDDVAKAIVEYVADH--GITKLVMGASSD------NHFSMK----FKKSDVASSVLKE---APDFCTVYVVSK 145 (146)
T ss_pred EEEEEEeCCcHHHHHHHHHHHc--CCCEEEEeccCC------Cceeec----ccCCchhHHHHhc---CCCCceEEEEeC
Confidence 43333332 44566666665 799999999964 233222 456 699999887 77 99999984
No 40
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.47 E-value=1.7e-06 Score=80.25 Aligned_cols=123 Identities=14% Similarity=0.203 Sum_probs=81.6
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCC---CchhhhhHHHHHHhccc----CC-CeEEEEEEe-
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGD---VDWETILDSEVLRGVKN----SE-YIRYVKHVV- 674 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~---~~~~~~~d~~~i~~~~~----~~-~v~y~e~~v- 674 (746)
+|++|..|.++.+.++++|.+||+..+++++++|+.++..... .+.+++..++.++.... .+ .+.+....-
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDH 80 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecC
Confidence 5899999999999999999999999999999999987532211 11111122233333322 22 333222111
Q ss_pred cChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 675 KDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 675 ~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
+-.+++.+.+++. +.|++++|.++.. . | ...-+|...+-+... ++|+||||+
T Consensus 81 ~~~~~I~~~a~~~--~~dlIV~G~~~~~--~-------~-~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 81 DIASGILRTAKER--QADLIIMGWHGST--S-------L-RDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred CHHHHHHHHHHhc--CCCEEEEecCCCC--C-------c-cceecCchHHHHHhc---CCCCEEEeC
Confidence 1235577766654 7999999999742 1 1 234689999999987 889999985
No 41
>PRK15005 universal stress protein F; Provisional
Probab=98.36 E-value=3.1e-06 Score=80.00 Aligned_cols=123 Identities=13% Similarity=0.187 Sum_probs=78.2
Q ss_pred cceEEEEeccCcC--hHHHHHHHHHhhhCCCeEEEEEEeeecCCCC-------CCc-----hhhhhHHHHHHhcccC---
Q 047826 602 LSNVAMLFIGGND--DREALTFAKRMVRDNKVRLTVVHFIAESDDG-------DVD-----WETILDSEVLRGVKNS--- 664 (746)
Q Consensus 602 ~~~I~~~f~gg~d--dreAl~~a~rma~~~~v~ltv~~~~~~~~~~-------~~~-----~~~~~d~~~i~~~~~~--- 664 (746)
.++|++|.+|.++ .+.|+++|.++|+..+++++++|++++.... ..+ ..++..++.++++...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 3689999999987 4799999999999999999999998642110 000 0111111223322221
Q ss_pred CCeEEEEEEecCh---hHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 665 EYIRYVKHVVKDG---AETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 665 ~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
..+.+... +..| +++++.+++. ++|||++|+|++ |+.+| -+|...+-+..+ ++|+||||+
T Consensus 82 ~~~~~~~~-v~~G~p~~~I~~~a~~~--~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~---a~cpVlvVr 144 (144)
T PRK15005 82 PTDRVHVH-VEEGSPKDRILELAKKI--PADMIIIASHRP-------DITTY----LLGSNAAAVVRH---AECSVLVVR 144 (144)
T ss_pred CCCceEEE-EeCCCHHHHHHHHHHHc--CCCEEEEeCCCC-------Cchhe----eecchHHHHHHh---CCCCEEEeC
Confidence 12223222 2233 3344444443 899999998731 33333 579999999998 999999984
No 42
>PRK09982 universal stress protein UspD; Provisional
Probab=98.36 E-value=1.4e-06 Score=82.45 Aligned_cols=121 Identities=14% Similarity=0.216 Sum_probs=77.0
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC-------C-Cchh---hhhHHHHHHhcccC-CCeEE
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDG-------D-VDWE---TILDSEVLRGVKNS-EYIRY 669 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~-------~-~~~~---~~~d~~~i~~~~~~-~~v~y 669 (746)
.++|+++.+|.++.+.|++.|.++|+.++++++++|++++.... . ++.+ ++..++.+++.... ....+
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKT 82 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 46899999999999999999999999999999999998642110 0 0000 11122234333322 11111
Q ss_pred EEEEecC---hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 670 VKHVVKD---GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 670 ~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
+..+.. ++++++.+++. ++|||++|+|+ +|+++| +| +.+-+..+ ++++||||.
T Consensus 83 -~~~v~~G~p~~~I~~~A~~~--~aDLIVmG~~~-------~~~~~~-----~~-va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 83 -KLRIERGEMPETLLEIMQKE--QCDLLVCGHHH-------SFINRL-----MP-AYRGMINK---MSADLLIVP 138 (142)
T ss_pred -eEEEEecCHHHHHHHHHHHc--CCCEEEEeCCh-------hHHHHH-----HH-HHHHHHhc---CCCCEEEec
Confidence 122222 35677766665 89999999752 234443 24 66666665 899999985
No 43
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.33 E-value=1.8e-06 Score=79.38 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=80.0
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCCCeEEEEEEecC-hhHHHH
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSEYIRYVKHVVKD-GAETVK 682 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~v~y~e~~v~~-g~~~~~ 682 (746)
||+++..+.+..++++++|.++|+..+++++++++.+++.....+..++..+.+.+..+.. .+.+....-.+ .+.+.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~I~~ 79 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEEL-GAEVVTLPGDDVAEAIVE 79 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCcHHHHHHH
Confidence 5899999999999999999999999999999999987653221122222222333333221 23232211112 344666
Q ss_pred HHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEE
Q 047826 683 IVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVM 740 (746)
Q Consensus 683 ~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvv 740 (746)
++++. +.|++++|+|+. + ++++ --+|...+-+...- .+++|||+
T Consensus 80 ~~~~~--~~dllviG~~~~--~----~~~~----~~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 80 FAREH--NVTQIVVGKSRR--S----RWRE----LFRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred HHHHc--CCCEEEeCCCCC--c----hHHH----HhcccHHHHHHHhC--CCCeEEEe
Confidence 66655 799999999963 1 2222 26888888888871 38899986
No 44
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.22 E-value=5.3e-06 Score=76.74 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=82.8
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCc--hhh----hhHHHHHHh-----ccc-CC-CeE
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVD--WET----ILDSEVLRG-----VKN-SE-YIR 668 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~--~~~----~~d~~~i~~-----~~~-~~-~v~ 668 (746)
.+||++++.+.++.++|+++|.++|+..+++++++|+.+........ ... ...+..... ... .+ ...
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVI 81 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhcccee
Confidence 46899999999999999999999999999999999999764332100 000 000000000 000 11 333
Q ss_pred EEEEEecC-hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 669 YVKHVVKD-GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 669 y~e~~v~~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
+......+ .+++.+++++. ++|++++|+++.. ++.+ --+|...+-++.+ ++++||||.
T Consensus 82 ~~~~~~~~~~~~i~~~~~~~--~~dliv~G~~~~~------~~~~----~~~gs~~~~l~~~---~~~pVlvv~ 140 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAEEH--NADLIVMGSRGRS------GLER----LLFGSVAEKLLRH---APCPVLVVP 140 (140)
T ss_dssp EEEEEESSHHHHHHHHHHHT--TCSEEEEESSSTT------STTT----SSSHHHHHHHHHH---TSSEEEEEE
T ss_pred EEEEEeeccchhhhhccccc--cceeEEEeccCCC------CccC----CCcCCHHHHHHHc---CCCCEEEeC
Confidence 33333333 45577777765 8999999999731 1222 2589999999997 889999984
No 45
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.21 E-value=5e-06 Score=78.72 Aligned_cols=124 Identities=12% Similarity=0.158 Sum_probs=79.0
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC------C--Cchhhh---hHHHHHHhcccCCCeEEE
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDG------D--VDWETI---LDSEVLRGVKNSEYIRYV 670 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~------~--~~~~~~---~d~~~i~~~~~~~~v~y~ 670 (746)
.++|+++.+|.+..+.|+++|..+|+.++++++++++..+.... . ++.+++ ..++.++++.....+...
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPIT 82 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 56899999999999999999999999999999999985321110 0 000111 111223333221122222
Q ss_pred EEEecC---hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEEEe
Q 047826 671 KHVVKD---GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQQQ 743 (746)
Q Consensus 671 e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvqq~ 743 (746)
+..+.. .+++++.+++. ++||||+|+|++ ++ . .+|-..+-+..+ ++|+||||...
T Consensus 83 ~~~~~~G~p~~~I~~~a~~~--~~DLIV~Gs~~~-------~~---~---~lgSva~~v~~~---a~~pVLvv~~~ 140 (144)
T PRK15118 83 ETLSGSGDLGQVLVDAIKKY--DMDLVVCGHHQD-------FW---S---KLMSSARQLINT---VHVDMLIVPLR 140 (144)
T ss_pred EEEEEecCHHHHHHHHHHHh--CCCEEEEeCccc-------HH---H---HHHHHHHHHHhh---CCCCEEEecCC
Confidence 223322 35566666665 899999999942 11 1 267777778877 89999999753
No 46
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.6e-05 Score=75.33 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=90.9
Q ss_pred cceeEEEec-CCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeeccccc---ccccccccchHHHHHHHHh
Q 047826 429 ELQIVSCIH-VPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKN---KNIYTYCYSENVILSFKKF 504 (746)
Q Consensus 429 e~riLv~i~-~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~---~~~~~~~~~~~i~~~f~~~ 504 (746)
..+|+++++ .++......+.+...+.. ....++++++++-............... .........++..+..++.
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKR--LGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHh--cCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 357999999 999999999888887743 4456678888775543222111100000 0000112234455555554
Q ss_pred ccccCcceE-EEEEEEEcCCCCh-HHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEe
Q 047826 505 GGLHWGAAS-INAFTAISPPDLM-HDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILI 582 (746)
Q Consensus 505 ~~~~~~~v~-v~~~~~vs~~~~~-~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilv 582 (746)
.+.. .+. +..... ..+. .+.|+..|.+.++|+|+||.+++++.++. .+|++.++|++++||||.++.
T Consensus 83 ~~~~--~~~~~~~~~~---~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 83 AEAA--GVPVVETEVV---EGSPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHHc--CCCeeEEEEe---cCCCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEEc
Confidence 4432 222 233322 2455 69999999999999999999988876663 389999999999999997764
No 47
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.15 E-value=2e-05 Score=72.00 Aligned_cols=122 Identities=16% Similarity=0.275 Sum_probs=80.5
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCC---CchhhhhHHHHHHhccc----CC-CeEEEEEEec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGD---VDWETILDSEVLRGVKN----SE-YIRYVKHVVK 675 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~---~~~~~~~d~~~i~~~~~----~~-~v~y~e~~v~ 675 (746)
+|++++.+++..+.+++.|.+||+..+.+++++++..+..... .+.+.+..++.++.+.. .+ .+.+.-..-.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD 80 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 5789999999999999999999999999999999986543221 01111222334444442 22 3333322222
Q ss_pred ChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEE
Q 047826 676 DGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVM 740 (746)
Q Consensus 676 ~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvv 740 (746)
..+++.+.+++. ++|++++|+++.. .|.+ --.|...+-+... ++++||+|
T Consensus 81 ~~~~i~~~~~~~--~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 81 PAEAILEAAEEL--GADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CHHHHHHHHHHc--CCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 345677777765 7999999998642 1211 2578888888876 77888875
No 48
>PRK10116 universal stress protein UspC; Provisional
Probab=98.14 E-value=8.5e-06 Score=76.85 Aligned_cols=123 Identities=13% Similarity=0.198 Sum_probs=77.0
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC----CC---chh---hhhHHHHHHhcccCCCeEEEE
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDG----DV---DWE---TILDSEVLRGVKNSEYIRYVK 671 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~----~~---~~~---~~~d~~~i~~~~~~~~v~y~e 671 (746)
.++|+++..+.++.+.|+++|.++|+..++++|++++..+.... .. +.+ ++..++++++...+..+....
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPIEK 82 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 57899999999999999999999999999999999987432110 00 000 111223344433221221222
Q ss_pred EEecCh---hHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 672 HVVKDG---AETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 672 ~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
..+..| +++.+.+++. ++||+|+|+|+. ++++.| +..++-++.. ++|+||||.
T Consensus 83 ~~~~~G~~~~~I~~~a~~~--~~DLiV~g~~~~------~~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 83 TFIAYGELSEHILEVCRKH--HFDLVICGNHNH------SFFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred EEEecCCHHHHHHHHHHHh--CCCEEEEcCCcc------hHHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 233333 3455555544 899999999963 223222 2356677776 999999995
No 49
>PRK15456 universal stress protein UspG; Provisional
Probab=98.13 E-value=2.8e-05 Score=73.51 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=77.5
Q ss_pred cceEEEEeccCc--ChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC------C--Cchh---hhhHHHHHHhcccC---C
Q 047826 602 LSNVAMLFIGGN--DDREALTFAKRMVRDNKVRLTVVHFIAESDDG------D--VDWE---TILDSEVLRGVKNS---E 665 (746)
Q Consensus 602 ~~~I~~~f~gg~--ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~------~--~~~~---~~~d~~~i~~~~~~---~ 665 (746)
.++|++|.+|.+ ..+.|+++|.++|+.. .+++++|+.++.... . ++.+ ++..++.++++... .
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTID 80 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 468999999984 7999999999999885 589999998652210 0 0011 11122233333321 1
Q ss_pred CeEEEEEEecC---hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 666 YIRYVKHVVKD---GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 666 ~v~y~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
...+. ..+.. .+++.+.+++. +.||||+|+|+. + +.+ .-+|-..+-++.+ ++|+||||.
T Consensus 81 ~~~v~-~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~g~--~-----~~~----~llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIK-QHVRFGSVRDEVNELAEEL--GADVVVIGSRNP--S-----IST----HLLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CcceE-EEEcCCChHHHHHHHHhhc--CCCEEEEcCCCC--C-----ccc----eecCccHHHHHHc---CCCCEEEeC
Confidence 22222 22223 33455555544 899999999862 2 112 2589999999998 999999984
No 50
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.09 E-value=0.00024 Score=74.53 Aligned_cols=250 Identities=15% Similarity=0.098 Sum_probs=148.1
Q ss_pred HHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC-----hhHHHHHHHHHhhccHHHHHHHHhh
Q 047826 105 IAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG-----GPTGLFITPLYYMTAYPVIFCLLTH 178 (746)
Q Consensus 105 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g-----~~~~l~ig~~ls~Ts~~vv~~il~e 178 (746)
+..++|-.|-.+|++...+..||...+-+.-+.+++++ +..++. +| ..+.+.+-.+++.|.-..=..+..|
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~---g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVI---GLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHH---HHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34678999999999998888888777777778888887 777666 44 1566666677777777777777788
Q ss_pred ccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 047826 179 LKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEVSR 258 (746)
Q Consensus 179 l~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~ 258 (746)
++- ++|.|-..+ ..++|.=-+.++++..+.... .|..
T Consensus 128 yG~-~~d~gA~~~--~sl~~GPf~tm~aLga~gLA~-----------------------------------ip~~----- 164 (312)
T PRK12460 128 FGD-ERDVGAISI--LSLNDGPFFTMLALGAAGLAN-----------------------------------IPIM----- 164 (312)
T ss_pred cCC-HhhhhHHhh--hhhccCcHHHHHHHHHHHHhc-----------------------------------CChH-----
Confidence 873 555554433 334554333333332211110 0100
Q ss_pred ccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHH
Q 047826 259 TGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGA 338 (746)
Q Consensus 259 ~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~ 338 (746)
.+-..+=+++.|+++.|..+ ++.+.+++ ...+.+|+|-+..|.++|++++.+. ++ ..+++.++.++.-.+.
T Consensus 165 --~lv~lilpILiGmilGNld~---~~~~~l~~-Gi~f~I~f~~f~LG~~lnl~~I~~~-G~--~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 165 --ALVAALLPLVLGMILGNLDP---DMRKFLTK-GGPLLIPFFAFALGAGINLSMLLQA-GL--AGILLGVLVTIVTGFF 235 (312)
T ss_pred --HHHHHHHHHHHHHHHhccch---hhHHHHhc-cceEeHHHHHHHhcCCeeHHHHHHh-Ch--HHHHHHHHHHHHHHHH
Confidence 01113334555555555321 22233333 2345899999999999999988654 33 2334444444445556
Q ss_pred HHHHHHHhCCChHHHHHHH--HHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCccc
Q 047826 339 CALLLLYWKMHRNDAMALA--LIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSR 411 (746)
Q Consensus 339 ~~~~~~~~~~~~~~~~~lg--~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~ 411 (746)
++...|++|.+.+-+..+| ..-+.=|-..++-+. ...+-.-+..-..+..++++|.+++|.++.|++|+.+
T Consensus 236 ~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAad--P~~~~~~~~Ataqvaa~vivTail~P~~t~~~~k~~~ 308 (312)
T PRK12460 236 NIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAAD--PSLAPVAAAATAQVAASVIVTAILTPLLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666688898888877777 443333333333222 1222233333444566778888889999999986543
No 51
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.74 E-value=0.0012 Score=68.92 Aligned_cols=246 Identities=15% Similarity=0.084 Sum_probs=141.4
Q ss_pred HHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CCh----------hHHHHHHHHHhhccHHHHH
Q 047826 105 IAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GGG----------PTGLFITPLYYMTAYPVIF 173 (746)
Q Consensus 105 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~----------~~~l~ig~~ls~Ts~~vv~ 173 (746)
+..++|-.|-++|++...+..||...+-+.-+++..++ +..+.. +|. .+.+.+-.+++.+....-.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~l---gl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~ 127 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALL---GLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYL 127 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHH---HHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHH
Confidence 44678999999999999999999888878888888887 777666 431 4556666667777777777
Q ss_pred HHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 047826 174 CLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEG 253 (746)
Q Consensus 174 ~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~ 253 (746)
.+..|++- ++|.|-. +...++|.=.+.++++-.+ .. .+ . .+..
T Consensus 128 aL~~~yGd-~~D~gA~--~i~sl~~GPf~tMl~LG~s--G~-a~-i-p~~~----------------------------- 170 (314)
T PF03812_consen 128 ALMGQYGD-EEDVGAF--SILSLNDGPFFTMLALGAS--GL-AN-I-PWMS----------------------------- 170 (314)
T ss_pred HHHHHhCC-HHHhHHH--HHHHhhhhHHHHHHHHhhc--cc-cC-C-CHHH-----------------------------
Confidence 77788773 4555433 2233444333333222111 00 00 0 0001
Q ss_pred cccccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHH
Q 047826 254 KEVSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAAL 333 (746)
Q Consensus 254 ~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~ 333 (746)
+-..+=+++.|+++.|.. +++.+.+.+ ....++|+|-...|..+|+..+.+. +. ..+++-++.++
T Consensus 171 --------lv~~llP~iiG~iLGNLD---~~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i~~a-Gl--~GIlLgv~~~~ 235 (314)
T PF03812_consen 171 --------LVAALLPIIIGMILGNLD---PDFRKFLAP-GVPILIPFFGFALGAGINLSNIIKA-GL--SGILLGVIVVV 235 (314)
T ss_pred --------HHHHHHHHHHHHHHhcCC---HHHHHHHhc-CCCeeeehhhhhhcCCCCHHHHHHh-Cc--chHHHHHHHHH
Confidence 111223667777777754 344444444 4678999999999999999987654 21 12222222222
Q ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHHHhHHHHH----HHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcC
Q 047826 334 VKFGACALLLLYW-KMHRNDAMALALIMNIKGIVE----MAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYD 408 (746)
Q Consensus 334 ~K~~~~~~~~~~~-~~~~~~~~~lg~~m~~kG~v~----l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~ 408 (746)
.--...++.-|+. |-+-.- |+..++-+.-+ .+++..-.+..-.-+..-..+..++++|.+++|.+++|++|
T Consensus 236 vtg~~~~~~dr~i~~~~g~a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 236 VTGIPLYLADRLILKGNGVA----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred HHhHHHHHHHHHHcCCCCce----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333345555553 322222 33333333322 23333322333333444556677888889999999999885
Q ss_pred c
Q 047826 409 P 409 (746)
Q Consensus 409 p 409 (746)
+
T Consensus 312 r 312 (314)
T PF03812_consen 312 R 312 (314)
T ss_pred h
Confidence 3
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.52 E-value=0.097 Score=57.73 Aligned_cols=284 Identities=16% Similarity=0.158 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHH---HHHHHH
Q 047826 60 GIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWY---IGILSV 136 (746)
Q Consensus 60 ~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~---i~~~~~ 136 (746)
.+|.++--++.|+++.. +|.++. |...+..+.+.+..+-+-+++.=++.|++.++|.++|.+. ++..+.
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~------p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~ 95 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDS------PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGT 95 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCC------CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHH
Confidence 47888888889999886 466520 1134556666666666666666678999999998888543 344443
Q ss_pred HHHHHhhhcceeeec--CChhHHHHHHHHHhhc------cHHHHHHHHhhccccCCchhHHHHHHHhHHh-HHHHHHHHH
Q 047826 137 IAPLVALIPGSMVPS--GGGPTGLFITPLYYMT------AYPVIFCLLTHLKILNSELGRLAQSSAIVAD-FLSYATILF 207 (746)
Q Consensus 137 ~~p~~l~~~~~~~~~--~g~~~~l~ig~~ls~T------s~~vv~~il~el~l~~s~~g~l~ls~a~i~D-~~~~~ll~i 207 (746)
.+-..+ ++.+.. +| ++..-++.+++.| .+..+... ++ .+ .. ..++++.-| ++.-+.+.+
T Consensus 96 viG~~v---a~~l~~~~l~-~~~wk~ag~l~gsyiGGs~N~~Av~~a---l~---~~-~~-~~~a~~aaDnv~~~~~~~~ 163 (378)
T PF05684_consen 96 VIGAVV---AFLLFGGFLG-PEGWKIAGMLAGSYIGGSVNFVAVAEA---LG---VS-DS-LFAAALAADNVVMALWFAF 163 (378)
T ss_pred HHHHHH---HHHHHhhccc-chHHHHHHHHHhcccCchhHHHHHHHH---HC---CC-HH-HHHHHHHHHHHHHHHHHHH
Confidence 333333 322222 23 2222233333322 23333332 23 22 23 444444444 444344433
Q ss_pred HHHHhh---------c-CCC----------c-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Q 047826 208 LTLSQV---------A-YSS----------P-------PKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEVSRTG 260 (746)
Q Consensus 208 ~~~~~~---------~-~~~----------~-------~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~ 260 (746)
...... . +.+ . ....+.+...+.....+..+...+..|+....... .-
T Consensus 164 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~-----~~ 238 (378)
T PF05684_consen 164 LLALPPFARKFDRWTKADTSSIEALEEEIEAEEAEWARKPISQDLAFLLAVAFAVVALSHALAAWLPPLFAGI-----SS 238 (378)
T ss_pred HHHHhhhhHHhhhccCCCccccchhhhhhhhhhhccccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cc
Confidence 322211 0 000 0 00112222222222222233333334442111110 01
Q ss_pred chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACA 340 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~ 340 (746)
+.-.++-....|++.... |..+.+ .--+. ...+++=+||+.+|+..|+..+.+. . ..+++.++.+....+..+
T Consensus 239 ~~~~il~~tt~~l~~~~~-~~~~~l-~g~~~-lg~~lly~ffa~IGa~a~i~~l~~a-p---~~~l~~~i~l~iH~~l~l 311 (378)
T PF05684_consen 239 STWLILTVTTLGLATSFP-PFRKLL-RGASE-LGTFLLYLFFAVIGASADISELLDA-P---SLFLFGFIILAIHLLLML 311 (378)
T ss_pred cHHHHHHHHHHHHHHhcc-chhhcC-CchHH-HHHHHHHHHHHHHccccCHHHHHHh-H---HHHHHHHHHHHHHHHHHH
Confidence 233455555566665433 444433 22233 4577888899999999999988763 2 234455555677888889
Q ss_pred HHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 047826 341 LLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASD 376 (746)
Q Consensus 341 ~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~ 376 (746)
..+|++|.+..+...-+ .=|.-|.........++.
T Consensus 312 ~~~kl~k~~l~~~~vAS-~AnIGGpaTA~a~A~a~~ 346 (378)
T PF05684_consen 312 ILGKLFKIDLFELLVAS-NANIGGPATAPAVAAAKG 346 (378)
T ss_pred HHHHHHCCCHHHHHHHh-hcccCCcchHHHHHHhcC
Confidence 99999999997665444 345555555544444444
No 53
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.33 E-value=0.0041 Score=64.63 Aligned_cols=250 Identities=15% Similarity=0.111 Sum_probs=132.6
Q ss_pred HHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC----------hhHHHHHHHHHhhccHHHHH
Q 047826 105 IAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG----------GPTGLFITPLYYMTAYPVIF 173 (746)
Q Consensus 105 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g----------~~~~l~ig~~ls~Ts~~vv~ 173 (746)
+..++|-.|-.+|++...+..||...+-+.-+++++++ +..++. +| ..+.+.+-.+++.|.-..=.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~---g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~ 127 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVV---AAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYA 127 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHH---HHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHH
Confidence 34678999999999998777777666656666666666 665555 33 14455555666666666666
Q ss_pred HHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 047826 174 CLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEG 253 (746)
Q Consensus 174 ~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~ 253 (746)
.+..|++- ++|.|-..+ ..++|.=-+.++++-.+ +-.+ ...+
T Consensus 128 aL~~qyGd-~~D~gA~~i--~sl~~GPf~TMi~LG~s---GlA~--ip~~------------------------------ 169 (314)
T TIGR00793 128 SIMQQYGT-KEEAGAFVL--MSLESGPLMTMVILGTA---GIAS--FEPH------------------------------ 169 (314)
T ss_pred HHHHHcCC-Hhhhhhhhh--hhhccCcHHHHHHHhhc---cCCC--CCHH------------------------------
Confidence 67777773 455554332 23444322222222110 0000 0001
Q ss_pred cccccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHH
Q 047826 254 KEVSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAAL 333 (746)
Q Consensus 254 ~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~ 333 (746)
-+-..+=+++.|+++.|-. +++.+-+.+ .....+|+|-...|..+|++.+.+. +. ..+++-+...+
T Consensus 170 -------~lv~~ilPlliG~ilGNLD---~~~r~fl~~-~~~~lIpFf~FaLGaginl~~i~~a-Gl--~GIlLGl~v~~ 235 (314)
T TIGR00793 170 -------VFVGAVLPFLVGFALGNLD---PELRDFFSK-AVQTLIPFFAFALGNTIDLGVIIQT-GL--LGILLGVSVII 235 (314)
T ss_pred -------HHHHHHHHHHHHHHHhcCC---HHHHHHhcc-CCCeeeehhhhhhcCCCCHHHHHHh-Cc--chHHHHHHHHH
Confidence 1112233667777777754 344444444 4578899999999999999887543 21 12222222222
Q ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCc
Q 047826 334 VKFGACALLLLYWK-MHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDP 409 (746)
Q Consensus 334 ~K~~~~~~~~~~~~-~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p 409 (746)
.--...++.-|+.+ -+..-....+-.-..--....+++..-.+..-.-+..-..+..++++|.+++|.++.|++|+
T Consensus 236 vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr 312 (314)
T TIGR00793 236 LTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKK 312 (314)
T ss_pred HHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23344555556553 22222222222111111122233333222222333334445567788888899999998854
No 54
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=97.31 E-value=7.9e-05 Score=83.12 Aligned_cols=347 Identities=11% Similarity=0.103 Sum_probs=198.9
Q ss_pred HHHHHHHHhhhC--CChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchh
Q 047826 49 SQAFHSVLKRFG--IPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGR 126 (746)
Q Consensus 49 a~~~~~l~~rl~--~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~ 126 (746)
+.+...+-.+++ .|--...|+.|+++|-.+.+.-......+ ..+.+- -.-+--++|-+|.-|.-+.+..+..
T Consensus 54 aKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L---~s~vFF---lyLLPPIvlDAGYfMp~r~Ff~Nlg 127 (670)
T KOG1966|consen 54 AKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFL---ESDVFF---LYLLPPIVLDAGYFMPNRAFFENLG 127 (670)
T ss_pred HHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccc---cccchh---hhhcCHHHhcccccCccHHHHhccc
Confidence 333333444443 78888889999998865433211000001 111110 0111236789999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhccee--eec---CC----hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHH
Q 047826 127 KAWYIGILSVIAPLVALIPGSM--VPS---GG----GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVA 197 (746)
Q Consensus 127 ~~~~i~~~~~~~p~~l~~~~~~--~~~---~g----~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~ 197 (746)
..+..|..|.+.-.+.++ +.+ +.+ +| ....+++|..+|..++..+..+.+|... |.-+=-++-+.+++|
T Consensus 128 tILlfAVvGTi~Na~~~g-~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlN 205 (670)
T KOG1966|consen 128 TILLFAVVGTIWNAFTIG-ASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLN 205 (670)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhc
Confidence 999999998887555421 111 111 34 2678899999999998888899999984 766777788999999
Q ss_pred hHHHHHHHHHHHHHhhc---CCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---ccc------------
Q 047826 198 DFLSYATILFLTLSQVA---YSSPPK---AIQLCVYILTFIVIVMVVVRPAMLLIARMTPEG---KEV------------ 256 (746)
Q Consensus 198 D~~~~~ll~i~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~---~~~------------ 256 (746)
|.+.+++.=+..+...- +..... ....++...+.+++++.++..+.....|.+..- +|+
T Consensus 206 DaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYlaYL~ 285 (670)
T KOG1966|consen 206 DAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLAYLT 285 (670)
T ss_pred CceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHHHHH
Confidence 99999887655443321 111110 011111111112222333333333333333322 222
Q ss_pred ccccchhhHHHHHHHHhhcCCCC-----chhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHH
Q 047826 257 SRTGFEFTVLGLYILGLAVPHGP-----PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLA 331 (746)
Q Consensus 257 ~~~~G~~~~lgafiaGl~i~~~~-----~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 331 (746)
.|.++++++++--+-|+++...- .....-++.+-...+..--++.|++.|..+-=.. ..+ .| .++.+-++..
T Consensus 286 aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~-h~w-d~-~Fi~~T~~fc 362 (670)
T KOG1966|consen 286 AEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSN-HHW-DF-AFICLTLVFC 362 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCc-cee-eh-hhhhhHHHHH
Confidence 23459999999999999987531 1111112222333455666778888888764221 112 33 3344444455
Q ss_pred HHHHHHHHHHHHHHh------CCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCh-----hhHHHHHHHHHHHHhhhH
Q 047826 332 ALVKFGACALLLLYW------KMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSP-----NMFRFMLGVVIVTGSVVP 400 (746)
Q Consensus 332 ~~~K~~~~~~~~~~~------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~-----~~~~~lv~~~lltt~i~~ 400 (746)
.+.|.+++..-+++. +++..|-+.++.+ +-||.++..+...--...+-.. ....++.+++.+..+..-
T Consensus 363 ~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQGiTIk 441 (670)
T KOG1966|consen 363 LIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQGITIK 441 (670)
T ss_pred HHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeeecccchH
Confidence 667888877777665 4677788776653 6788777665443322222222 233334444555555567
Q ss_pred HHHHhhc
Q 047826 401 ILVRKLY 407 (746)
Q Consensus 401 ~l~~~~~ 407 (746)
|+++++-
T Consensus 442 plvk~L~ 448 (670)
T KOG1966|consen 442 PLVKFLK 448 (670)
T ss_pred HHHHHHc
Confidence 8888875
No 55
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.11 E-value=0.0016 Score=70.85 Aligned_cols=110 Identities=8% Similarity=0.015 Sum_probs=72.0
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccc--
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGL-- 507 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~-- 507 (746)
-|||+|++.+++...+++-+..++.......+++++|+++...... ..+ ......+++++..++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~~~------~~~~~~eelle~~~~~~~~~l 75 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----EGQ------DELAAAEELLERVEVWATEDL 75 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----chh------HHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999988883311257999999988422110 000 0011223444444443322
Q ss_pred --cCcceEEEEEEEEc-----CCCChHHHHHHHHhhcCCcEEEecCccc
Q 047826 508 --HWGAASINAFTAIS-----PPDLMHDDICTLALDKLASLVILPFHRT 549 (746)
Q Consensus 508 --~~~~v~v~~~~~vs-----~~~~~~~~I~~~a~e~~a~lII~p~h~~ 549 (746)
...+++++..+... ...+.++.|++.|++.++|+|||+-..+
T Consensus 76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCC
Confidence 11357777665542 1268999999999999999999995443
No 56
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.99 E-value=0.19 Score=53.45 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhcccChHHHHhchhh--HHHHHHH-HH-HHHHHhhhcceeeec-CChhHHHHHHHHHh-hccHHHHHHHH
Q 047826 103 IGIAFFIFQSGVKMDISMVAKVGRK--AWYIGIL-SV-IAPLVALIPGSMVPS-GGGPTGLFITPLYY-MTAYPVIFCLL 176 (746)
Q Consensus 103 lgl~~llF~~Gle~d~~~l~~~~~~--~~~i~~~-~~-~~p~~l~~~~~~~~~-~g~~~~l~ig~~ls-~Ts~~vv~~il 176 (746)
..+.+.||..|+.++.+++++..++ ....+.+ .+ +.|.+. +.++. ++.......|..+. .+..++...++
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla----~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG----FLLAKVFKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH----HHHHHHhCCCHHHHHHHHheeeCCCchHHHHH
Confidence 3478899999999999999887763 3433433 33 345443 33333 44223333444442 22222333334
Q ss_pred hhccccCCchhHHHHHHHhHHhHHHHHHHHHH
Q 047826 177 THLKILNSELGRLAQSSAIVADFLSYATILFL 208 (746)
Q Consensus 177 ~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~ 208 (746)
.+.- +. -..++.+...++-+++.+.+.+.
T Consensus 88 t~~~--~g-n~~la~~~~~~stlls~vt~Pl~ 116 (286)
T TIGR00841 88 TYLL--KG-DMALSISMTTCSTLLALGMMPLL 116 (286)
T ss_pred HHHh--CC-CHhhhhHHHHHHHHHHHHHHHHH
Confidence 3322 22 24555555666666666665433
No 57
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.98 E-value=0.007 Score=65.91 Aligned_cols=99 Identities=8% Similarity=0.072 Sum_probs=65.2
Q ss_pred CcceEEEEeccCcChHHHHHHHHHhhhCC--CeEEEEEEeeecCCCCCC-----chhhhhHHHHHHhccc----CC-CeE
Q 047826 601 SLSNVAMLFIGGNDDREALTFAKRMVRDN--KVRLTVVHFIAESDDGDV-----DWETILDSEVLRGVKN----SE-YIR 668 (746)
Q Consensus 601 ~~~~I~~~f~gg~ddreAl~~a~rma~~~--~v~ltv~~~~~~~~~~~~-----~~~~~~d~~~i~~~~~----~~-~v~ 668 (746)
..+||++|++|.+..+.|+++|..+|+.. ++++|++|++++...... +..++..++.-++.+. ++ .+.
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ 83 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVT 83 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Confidence 36799999999999999999999999985 699999999875332211 1111222222332222 11 344
Q ss_pred EEEEEec---------C-hhHHHHHHHhhccCCcEEEEcccCC
Q 047826 669 YVKHVVK---------D-GAETVKIVHSIVSEFELIIVGRRYN 701 (746)
Q Consensus 669 y~e~~v~---------~-g~~~~~~i~~~~~~~DLiiVG~~~~ 701 (746)
+....+. + .++|++++++. ++|||++|....
T Consensus 84 ve~~vv~~~~~~~~~G~pae~Iv~~Aee~--~aDLIVm~~~~~ 124 (357)
T PRK12652 84 IETALLGTDEYLFGPGDYAEVLIAYAEEH--GIDRVVLDPEYN 124 (357)
T ss_pred eEEEEEeccccccCCCCHHHHHHHHHHHc--CCCEEEECCCCC
Confidence 4444332 2 55677777765 899999999864
No 58
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.97 E-value=0.23 Score=52.86 Aligned_cols=259 Identities=11% Similarity=0.007 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHhhcccChHHHHhchhh---HHHHHHHHHHHHHHhhhcceeeec-CChhHHHHHHHHHhhccHH--
Q 047826 97 IGSMGNIGIAFFIFQSGVKMDISMVAKVGRK---AWYIGILSVIAPLVALIPGSMVPS-GGGPTGLFITPLYYMTAYP-- 170 (746)
Q Consensus 97 l~~la~lgl~~llF~~Gle~d~~~l~~~~~~---~~~i~~~~~~~p~~l~~~~~~~~~-~g~~~~l~ig~~ls~Ts~~-- 170 (746)
++..-.+.+.++||..|+.+..+++++..|+ ........+++--++ ++++++ +.-+.-+..|..+-.+.+.
T Consensus 36 ~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPll---a~~~~~~~~l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 36 LGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLL---ALLLAKLFPLPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHH---HHHHHHHcCCCHHHHHhHHheeeCCCch
Confidence 3334478889999999999999998876654 333333333332233 444444 2223445555555322221
Q ss_pred --HHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHH-hhc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 171 --VIFCLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLS-QVA--YSSPPKAIQLCVYILTFIVIVMVVVRPAMLL 245 (746)
Q Consensus 171 --vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~ 245 (746)
.+...+. +.+ .-+.++.+.++.+++.++.-+...+ .++ +.+.+..++.++..++.-++.+.+.|+....
T Consensus 113 ~S~~~t~lA-----kGn-ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~ 186 (319)
T COG0385 113 ASNAMTYLA-----KGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPK 186 (319)
T ss_pred hHHHHHHHh-----cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3232232 222 3345666778888888776544333 222 2244566677766666666677777777665
Q ss_pred HHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHH
Q 047826 246 IARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNI 325 (746)
Q Consensus 246 ~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~ 325 (746)
..++..+- ...+... .+++-++-...+..-+... . . ..+.
T Consensus 187 ~~~~~~~~--------------------------------l~~vs~~--~illIv~~~~s~~~~~~~~---~-~--~~v~ 226 (319)
T COG0385 187 WVERLKKA--------------------------------LPPVSVL--SILLIVYAAFSAAVENGIW---S-G--LLIF 226 (319)
T ss_pred HHHHHhhh--------------------------------cchhhHH--HHHHHHHHHHHHHHHhhhH---H-H--HHHH
Confidence 54443221 1111111 2222223333322222111 1 1 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhH-HHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHH
Q 047826 326 ALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIK-GIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVR 404 (746)
Q Consensus 326 ~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~k-G~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~ 404 (746)
+..++--..-+..+|..+|.+|++..|...+.+--+.| +..+..+++....+ +..--..++..++..+..+.+.+
T Consensus 227 ~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~----~~~alP~aif~~~q~~~~a~la~ 302 (319)
T COG0385 227 VAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGN----PLMALPLAIFSVWQNMSGAVLAG 302 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCC----chhHhHHHHHHHHHHHHHHHHHH
Confidence 11112222346778888999999999988877644444 34445555542222 44444445556666666776777
Q ss_pred hhcC
Q 047826 405 KLYD 408 (746)
Q Consensus 405 ~~~~ 408 (746)
++.|
T Consensus 303 ~~~~ 306 (319)
T COG0385 303 LYAR 306 (319)
T ss_pred HHHh
Confidence 6654
No 59
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.77 E-value=0.41 Score=51.96 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcccChHHHHhchhhHHH--HHH-HHH-HHHHHhhhcceeeec-C-ChhHHHHHHHHHhhccHH-HHHH
Q 047826 102 NIGIAFFIFQSGVKMDISMVAKVGRKAWY--IGI-LSV-IAPLVALIPGSMVPS-G-GGPTGLFITPLYYMTAYP-VIFC 174 (746)
Q Consensus 102 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~--i~~-~~~-~~p~~l~~~~~~~~~-~-g~~~~l~ig~~ls~Ts~~-vv~~ 174 (746)
.++++++||-.|++++++++++..|+... ++. ..+ +.|++ ++++++ + +....+.+|..+....+. +.+.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pll----a~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFL----MFLLAWLFLRDLFEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHH----HHHHHHHHcCCCHHHHHHHHHHHhcchHHHHH
Confidence 35666899999999999998887765332 222 223 23443 344444 2 433336666666433322 2333
Q ss_pred HHhhccccCCchhHHHHHHHhHHhHHHHHHHHH
Q 047826 175 LLTHLKILNSELGRLAQSSAIVADFLSYATILF 207 (746)
Q Consensus 175 il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i 207 (746)
++..+- +.+. .++++.+.++-+++.++...
T Consensus 122 v~T~lA--kGnv-alsv~lt~~stLl~~~~~P~ 151 (328)
T TIGR00832 122 VWNQLA--KGDP-EYTLVLVAVNSLFQVFLYAP 151 (328)
T ss_pred HHHHHc--CCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 344332 3332 25555667777777666643
No 60
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.76 E-value=0.8 Score=49.30 Aligned_cols=322 Identities=16% Similarity=0.118 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCh--HHH-HHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcc
Q 047826 39 MFLIATMLIISQAFHSVLKRFGIPI--FIS-QIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVK 115 (746)
Q Consensus 39 l~~i~~il~~a~~~~~l~~rl~~P~--iv~-~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle 115 (746)
..+.++.++++.+.++++..+++|. ..| -+++|++.+-.... ++ -. ..+...|...+=-.+|..
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~---------~P---~~l~~~~q~ilG~~ig~~ 74 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LP---------LP---RGLFKAGQVILGIMIGAS 74 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-cc---------CC---hHHHHHHHHHHHHHHhhh
Confidence 5667778888889999999999874 344 55556665522111 11 11 334455556566688998
Q ss_pred cChHHH---HhchhhHHHHHHHHHHHHHHhhhcceeeecCC--h-hHHHHHHHHHhhccHHHHHHHHhhccccCCchhHH
Q 047826 116 MDISMV---AKVGRKAWYIGILSVIAPLVALIPGSMVPSGG--G-PTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRL 189 (746)
Q Consensus 116 ~d~~~l---~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~~g--~-~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l 189 (746)
+..+.+ ++++.....+.+........+ |+.+..++ + .++++-..--..+..++++ +|+|. +.+..-+
T Consensus 75 ~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~---g~ll~r~~~~~~~Ta~~gs~PGgas~m~~iA---~d~gA-d~~~VAl 147 (352)
T COG3180 75 LTPSVLDTLKSNWPIVLVVLLLTLLSSILL---GWLLKRFSILPGNTAFLGSSPGGASAMVSIA---QDYGA-DLRLVAL 147 (352)
T ss_pred cCHHHHHHHHHcccHHHHHHHHHHHHHHHH---HHHHHHhcCCCcchhhHhcCCchHHHHHHHH---HHhCC-ChhHHHH
Confidence 887765 444444444444444444444 44443333 2 4444333222333333333 56663 4333222
Q ss_pred HHHHHhHHhHHHHHHHH-HHHHHhh--c-CCCchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCcccccc
Q 047826 190 AQSSAIVADFLSYATIL-FLTLSQV--A-YSSPPKAIQ----LCVYILTFIVIVMVVVRPAMLLIAR--MTPEGKEVSRT 259 (746)
Q Consensus 190 ~ls~a~i~D~~~~~ll~-i~~~~~~--~-~~~~~~~~~----~~~~~~~~~~~~~~v~r~~~~~~~~--~~~~~~~~~~~ 259 (746)
.-+.= ++.+++++ ++.-... + +.+....+| .... .++......+. .++.+ |.|.+
T Consensus 148 ~Q~lR----vl~Vvl~vplv~~~~~~~~a~~~~~~~i~~~~~~~~~-~~~l~~~~~~~----g~l~~~lr~Pa~------ 212 (352)
T COG3180 148 MQYLR----VLFVVLLAPLVSRLFVGDGANGSGTPEIWLPPVDWLI-LLLLILAALLG----GLLGKLLRFPAP------ 212 (352)
T ss_pred HHHHH----HHHHHHHHHHHHHHhcCCCCCCCCCccccCchhhHHH-HHHHHHHHHHH----HHHHHHHcCCcH------
Confidence 22211 11122221 1111111 1 111100111 0000 11111111111 12222 23443
Q ss_pred cchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHH
Q 047826 260 GFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGAC 339 (746)
Q Consensus 260 ~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~ 339 (746)
..+|+++.|..+.-.....-++-+-+. .+---+.-..+|.++|-..+....-.....++.++..++.-...+
T Consensus 213 ----~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a 284 (352)
T COG3180 213 ----TLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMA 284 (352)
T ss_pred ----HHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHH
Confidence 578888888877765311111111111 111223445789999866554322112334455555556667777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHH-HHHHHHHHhhhHHHHHhhcCc
Q 047826 340 ALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFM-LGVVIVTGSVVPILVRKLYDP 409 (746)
Q Consensus 340 ~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~l-v~~~lltt~i~~~l~~~~~~p 409 (746)
++..++.+.++.+++. ..+|-|.-+++....+.+.. ...-..+ ++=.++...+.|++.|++.|.
T Consensus 285 ~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ad---~a~V~a~q~lRll~il~i~p~l~r~l~~~ 349 (352)
T COG3180 285 GLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGAD---PAFVMALQVLRLLFILLLGPALARFLSKR 349 (352)
T ss_pred HHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999988764 56888888888776665432 2111111 112222333458888887643
No 61
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=96.74 E-value=0.38 Score=52.94 Aligned_cols=291 Identities=16% Similarity=0.150 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHhhhCCChHHHHHHHHHh---cCccccccccccccccCcccHHHHHHHHHHHHHHHHHH
Q 047826 38 IMFLIATMLIISQAFHS---VLKRFGIPIFISQIFAGLL---LSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQ 111 (746)
Q Consensus 38 ~l~~i~~il~~a~~~~~---l~~rl~~P~iv~~Il~Gii---lGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~ 111 (746)
.+.-+++++++++++-. +++|+.+|.-+ ++|++ +.+ .++....+ +.-| +.. +.+.-++.++=.
T Consensus 8 tl~la~ilLliG~~Lr~ki~~lqk~~IPasv---IgGli~~il~~-~l~~~~~~-~~~f--~~~----l~~~lm~~fF~~ 76 (368)
T PF03616_consen 8 TLALASILLLIGKFLRAKIPFLQKLFIPASV---IGGLIFAILPL-ILGGFGGI-SISF--DTS----LQDFLMIIFFTT 76 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHccCCchH---HHHHHHHHHHH-HHHhcCce-EEEe--chh----HHHHHHHHHHHH
Confidence 34444556666665544 78888899755 44443 222 12211110 0001 111 233333334446
Q ss_pred hhcccChHHHHhchhhHHHHHHHHHH---HHHHhhhcceeeec-CC--hhHHHHHHHHHhhc----cHHHHHHHHhhc-c
Q 047826 112 SGVKMDISMVAKVGRKAWYIGILSVI---APLVALIPGSMVPS-GG--GPTGLFITPLYYMT----AYPVIFCLLTHL-K 180 (746)
Q Consensus 112 ~Gle~d~~~l~~~~~~~~~i~~~~~~---~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~T----s~~vv~~il~el-~ 180 (746)
+|+..+++.+||.+|+.......... +..++ |..++. +| +...++.|. .+.+ ......+.++|+ +
T Consensus 77 igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~v---G~~la~l~gl~p~~Gll~Gs-i~f~GGhGTAaa~g~~fe~~~G 152 (368)
T PF03616_consen 77 IGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIV---GLGLAKLLGLDPLFGLLAGS-IGFTGGHGTAAAFGPTFEELYG 152 (368)
T ss_pred HhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCchHHHHhcc-ccccCCccHHHHHHHHHHHhcC
Confidence 78888999999988876654433322 22223 333333 33 233333321 2221 124455677776 6
Q ss_pred ccCCchhHHHHHHHhHHhHHHHHHHH-HHHH-HhhcC----C--C-c---------------hHHHHHHHHHHHHHHHHH
Q 047826 181 ILNSELGRLAQSSAIVADFLSYATIL-FLTL-SQVAY----S--S-P---------------PKAIQLCVYILTFIVIVM 236 (746)
Q Consensus 181 l~~s~~g~l~ls~a~i~D~~~~~ll~-i~~~-~~~~~----~--~-~---------------~~~~~~~~~~~~~~~~~~ 236 (746)
..+ -..+++++|.+.=+.+.++=. +..- ..++. . + . ......++..++++.++.
T Consensus 153 ~~~--a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l~~i~i~~ 230 (368)
T PF03616_consen 153 WEG--ATSVGMAAATFGLVVGGLIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHLALILIAI 230 (368)
T ss_pred hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHHHHHHHHH
Confidence 522 345566666555554433322 2211 11110 0 0 0 001112222333333333
Q ss_pred HHHHHHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcCCCC------chhhHHHHHhhHhHHHhhHHHHHHHHhhccC
Q 047826 237 VVVRPAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGP------PLGSALVNKFDTMISGFFLPIFVTTSAMRLH 310 (746)
Q Consensus 237 ~v~r~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~------~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d 310 (746)
.+...+..|+.+ ....++...+|++.|+++.+.. ...++..++ +.++.+=+|.+..=+.++
T Consensus 231 ~~G~~i~~~l~~---------~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~----I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 231 GLGYIISALLKK---------IGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDR----ISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHH---------cCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 333333333332 1114667788999999887631 122333333 345566666677778888
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047826 311 DLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMN 361 (746)
Q Consensus 311 ~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~ 361 (746)
+..+.+. +.+.++++++-.++.-+...++..|..+-++ |+..++...+
T Consensus 298 l~~l~~~--a~Plliil~~q~i~~~~f~~fv~fr~~gkdy-daavm~~G~~ 345 (368)
T PF03616_consen 298 LWVLADY--ALPLLIILAVQTILMVLFAYFVTFRVMGKDY-DAAVMSAGFC 345 (368)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh-hHHHHhhhhh
Confidence 8888765 2343444444444445556666777888776 6666554443
No 62
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.72 E-value=0.79 Score=49.62 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=78.5
Q ss_pred HhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHH
Q 047826 56 LKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILS 135 (746)
Q Consensus 56 ~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~ 135 (746)
+++.+++..+--|+.|+++|+......+. ..-|...-.-+.+=.+|++ +.|.+++++++.+.+.+.+.+....
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~ 98 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKRGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLI 98 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccchHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHH
Confidence 34568999999999999999854221111 0111012234466678887 7899999999999999988777666
Q ss_pred HHHHHHhhhcceeee-c-CC--hhHHHHHHHHHhh---ccHHHHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHH
Q 047826 136 VIAPLVALIPGSMVP-S-GG--GPTGLFITPLYYM---TAYPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATIL 206 (746)
Q Consensus 136 ~~~p~~l~~~~~~~~-~-~g--~~~~l~ig~~ls~---Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~ 206 (746)
+...+.+ ++.++ . ++ +..+++++.-.+. ++...+.+.++. +.+.-..+++.-.+=+.++.+++-
T Consensus 99 v~~~~~~---~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A----~~~~~a~ava~V~lfgt~am~l~P 169 (335)
T TIGR00698 99 LTSTFFL---TVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKA----EKEKVSVAIAIVVIFGTTGIFLYP 169 (335)
T ss_pred HHHHHHH---HHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCC----CccceeeeehHHHHHHHHHHHHHH
Confidence 6666666 55555 2 44 3444554433322 222333333321 222233444444444555555543
No 63
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.61 E-value=0.3 Score=52.23 Aligned_cols=238 Identities=13% Similarity=0.107 Sum_probs=130.6
Q ss_pred hhCCChHHHHHHHHHhcCccccccccccccccCcccHH-HHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHH
Q 047826 58 RFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQ-LIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSV 136 (746)
Q Consensus 58 rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~-~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~ 136 (746)
..+++..+--|+.|+++|+..++..+.+. | ... .-+.+-.+|++ +.|.++++.++.+.+.+...+....+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~----~-Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v 93 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFK----P-GIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVV 93 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHH----h-HHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHH
Confidence 46899999999999999973334322110 1 122 23466778887 78999999999999999888888888
Q ss_pred HHHHHhhhcceeee-c-CC--hhHHHHHHHHHhh---ccHHHHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHH
Q 047826 137 IAPLVALIPGSMVP-S-GG--GPTGLFITPLYYM---TAYPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATILFLT 209 (746)
Q Consensus 137 ~~p~~l~~~~~~~~-~-~g--~~~~l~ig~~ls~---Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~ 209 (746)
...+.+ ++.++ . ++ ...+.+++.-.+. ++...+.++++. +.+.-..+++.-.+=+.++.+++-.+.
T Consensus 94 ~~~~~~---~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a----~~~~~a~ava~V~lfg~vam~~~P~l~ 166 (305)
T PF03601_consen 94 ILTFLL---TYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA----KEEDVAYAVATVFLFGTVAMFLYPLLG 166 (305)
T ss_pred HHHHHH---HHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC----CCCceeeeehHHHHHHHHHHHHHHHHH
Confidence 888888 77777 4 55 3555555544443 334444444432 222233344444445555555554332
Q ss_pred HHhhcC---------CC---ch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc-ccc
Q 047826 210 LSQVAY---------SS---PP----------------KAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEVS-RTG 260 (746)
Q Consensus 210 ~~~~~~---------~~---~~----------------~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~-~~~ 260 (746)
....-+ .+ .. ..+..+.-.+....++ .++.++.+|..+++.-+ ...
T Consensus 167 ~~l~l~~~~~G~w~G~sIh~~aqVvaAg~~~g~~a~~~A~ivKl~Rv~lL~pv~-----~~l~~~~~~~~~~~~~~~~~~ 241 (305)
T PF03601_consen 167 HALGLSPQQFGAWAGGSIHDTAQVVAAGAIYGEEAGDVATIVKLTRVLLLGPVV-----LVLALFWARRQEKSSGKSKKV 241 (305)
T ss_pred HHhCCCHHHHHHHhhhhhcccchHhhhhhccChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhccccccccCcc
Confidence 221100 00 00 0000011111111111 11222223322221111 122
Q ss_pred chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccch
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTF 317 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~ 317 (746)
-++..+-.|++=.++.......+.+.+-+..+ +.+++-+=|+.+|+++|++.+.+.
T Consensus 242 ~~P~FvlgFl~~~~l~s~~~~~~~~~~~~~~~-s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 242 SFPWFVLGFLAASLLNSLGLLPAAVVSALKSL-SKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHhhcCcHHHHHhc
Confidence 35555556665555555445556777777765 566777788889999999988643
No 64
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.51 E-value=0.073 Score=57.26 Aligned_cols=248 Identities=14% Similarity=0.049 Sum_probs=124.4
Q ss_pred HHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CCh----------hHHHHHHHHHhhccHHHHHHH
Q 047826 107 FFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GGG----------PTGLFITPLYYMTAYPVIFCL 175 (746)
Q Consensus 107 ~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~----------~~~l~ig~~ls~Ts~~vv~~i 175 (746)
.++|-.|-.+|++...+..||...+.+.-+.+..++ +..+.. ++. ...+-...++..+...+-...
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~---~~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~ 131 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALV---GVIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAAL 131 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHH---HHHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 678999999999998888888877777777777777 666555 331 222222333333443433333
Q ss_pred HhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 047826 176 LTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKE 255 (746)
Q Consensus 176 l~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~ 255 (746)
+.+++- +.+.|..++-+ ++|.--..++.+.. .++.+ .|..
T Consensus 132 ~~~~g~-~~d~ga~i~ls--l~~Gp~~tM~lL~a----------------------------------agla~-~p~~-- 171 (326)
T PRK05274 132 MGQYGT-KEDAGAFVLMS--LEDGPFMTMLALGA----------------------------------AGLAS-FPPP-- 171 (326)
T ss_pred HHHhCC-CCCcchHHHHH--HhhhHHHHHHHHHh----------------------------------hCccc-CCCc--
Confidence 333332 22233222211 11111000000000 00000 1111
Q ss_pred cccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHH
Q 047826 256 VSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVK 335 (746)
Q Consensus 256 ~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K 335 (746)
-+-+.+.+++.|..+.+- .+.+.+... ..-.+++|++-...|.++|++.+... .+ . .+++.+..++..
T Consensus 172 -----~li~allplliG~~lgnl---~~~l~~~~~-~Gi~~lLp~~~~~lG~~l~lq~i~~~-G~-~-GilL~~~~~~~t 239 (326)
T PRK05274 172 -----ALVGAVLPLLVGFILGNL---DPELRQFLG-KAVPVLIPFFAFALGNGIDLGTIITA-GL-S-GILLGVAVVAVT 239 (326)
T ss_pred -----hhhHHHHHHHHHHHHHhH---HHhhHHHhc-CCcEEEHHHHHHHHhcceeHhHHHhc-CC-c-chhhhhhHhhcc
Confidence 112222677777777763 222333333 34456999999999999999887543 32 1 233333334444
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCccc
Q 047826 336 FGACALLLLYWKMHRN---DAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSR 411 (746)
Q Consensus 336 ~~~~~~~~~~~~~~~~---~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~ 411 (746)
....+...|+++.... -+...+..-+.-|-.. ++......+-..+..-..+..++++++++.|.+..+++|+.+
T Consensus 240 ~~~~~~~~Rl~~~~~g~~g~a~~ttaG~aic~pAA--vaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~ 316 (326)
T PRK05274 240 GIPLYLADRLIGGGNGVAGAAAGSTAGNAVATPAA--VAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVG 316 (326)
T ss_pred chhhHhHhheeecCCCcchHHHHHHHHHHHHHHHH--HHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5544555577753322 2222222222222222 222222233345555555666777888888988888885443
No 65
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.68 Score=49.32 Aligned_cols=262 Identities=13% Similarity=0.076 Sum_probs=127.5
Q ss_pred hHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHH--HH-HH-HHH
Q 047826 63 IFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYI--GI-LS-VIA 138 (746)
Q Consensus 63 ~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i--~~-~~-~~~ 138 (746)
-+.-.+++|+.+|-+.=+.....++. +...++.--.+|++..|+-.=+++|.+++++..|+.-.+ ++ .. ++-
T Consensus 19 wv~l~i~~Gi~lG~~~p~~~~~l~~~----~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~ 94 (342)
T COG0798 19 WVFLAIAIGILLGVHFPGLAQLLGKL----EFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIG 94 (342)
T ss_pred HHHHHHHHHHHHHhcccchhhhcccc----eeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34555667777775432211100000 223344445678888888888899999988877653222 11 12 223
Q ss_pred HHHhhhcceeeec--CChhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCC
Q 047826 139 PLVALIPGSMVPS--GGGPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLSQVAYS 216 (746)
Q Consensus 139 p~~l~~~~~~~~~--~g~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~ 216 (746)
|+++ +++++ +++......|.++-.-+ |.++.++-=-++.+.+. ..++..-.+||++.+++.+......-+..
T Consensus 95 P~lm----~~la~~fl~~~pey~~GlILlglA-pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~ 168 (342)
T COG0798 95 PLLM----FALAWFFLPDEPEYRAGLILLGLA-PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVI 168 (342)
T ss_pred HHHH----HHHHHHHhCCCHHHHHHHHHHHhh-hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5544 23333 33222344444443222 22222221123334443 34455567899999988865433222111
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhH-HH
Q 047826 217 SPPKAIQLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMI-SG 295 (746)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~-~~ 295 (746)
+..-..+.++..+...+...++...+.++...|....+ ...+++..+++.+. -+
T Consensus 169 ~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~-------------------------~~~~~f~p~ispi~lig 223 (342)
T COG0798 169 SISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGRE-------------------------WYESRFLPKISPIALIG 223 (342)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------------------------HHHHHHHhhcChHHHHH
Confidence 12223445555555555555555555555555533221 12233344444331 11
Q ss_pred hhHHHHHHHHhhccCcccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhH
Q 047826 296 FFLPIFVTTSAMRLHDLSL-HTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIK 363 (746)
Q Consensus 296 ~f~PiFF~~~G~~~d~~~l-~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~k 363 (746)
++.-+ ++..+.+-| .+ ..+.. +..+++-.+.-+...+..+++.++..|.|-+++..+++....+
T Consensus 224 Ll~Ti-vliF~~qg~--~Iv~~p~~-i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSN 288 (342)
T COG0798 224 LLLTI-VLIFAFQGE--QIVEQPLD-ILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASN 288 (342)
T ss_pred HHHHH-HHHHHHhHH--HHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccc
Confidence 11111 112222222 12 12212 2233344444556677888888999999999999888765554
No 66
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.44 E-value=0.022 Score=53.65 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=82.7
Q ss_pred cceEEEEec-cCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCC--------------chhhhhHHHHHHhcccC--
Q 047826 602 LSNVAMLFI-GGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDV--------------DWETILDSEVLRGVKNS-- 664 (746)
Q Consensus 602 ~~~I~~~f~-gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~--------------~~~~~~d~~~i~~~~~~-- 664 (746)
.++|+++.. |.+..+.|+..+..++...+..++++++......... ...++..++.+++.+..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 568999999 9999999999999999999999998888754332110 01122234444444432
Q ss_pred -CCeEEEEEEecC----hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEE
Q 047826 665 -EYIRYVKHVVKD----GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLV 739 (746)
Q Consensus 665 -~~v~y~e~~v~~----g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLv 739 (746)
..+...+..+.. ++++....++. ++|++++|.++. +.|.+ --||-..+-++.. ++++|||
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~~~--~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~---~~~pVlv 149 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAEEE--DADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH---APCPVLV 149 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHHHh--CCCEEEECCCCC---------ccccc-eeeehhHHHHHhc---CCCCEEE
Confidence 122211222222 24444455544 799999999832 22222 4799999999998 9999999
Q ss_pred EEEe
Q 047826 740 MQQQ 743 (746)
Q Consensus 740 vqq~ 743 (746)
++..
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 9753
No 67
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.43 E-value=0.72 Score=50.87 Aligned_cols=249 Identities=10% Similarity=-0.031 Sum_probs=137.6
Q ss_pred cccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--h-hHHHHHHHHHh-----hccHHHHHHHHhh-ccccC
Q 047826 114 VKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG--G-PTGLFITPLYY-----MTAYPVIFCLLTH-LKILN 183 (746)
Q Consensus 114 le~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g--~-~~~l~ig~~ls-----~Ts~~vv~~il~e-l~l~~ 183 (746)
+.||-+.+.|...|-+..-+.+.+..+++ +.+++. +| + ...+.++.-+. .-+.|... +..+ ++.-.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~---g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~-~Ya~~~g~~~ 184 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLL---GGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQ-IYAEALGQDA 184 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHH-HHHHHhCCCH
Confidence 37888888888888777666776666666 555555 44 2 33333333222 12223222 2222 23333
Q ss_pred CchhHHHHHHHhHHhHHHHHHHHHHHHHhhc------CC------C---c------hHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 184 SELGRLAQSSAIVADFLSYATILFLTLSQVA------YS------S---P------PKAIQLCVYILTFIVIVMVVVRPA 242 (746)
Q Consensus 184 s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~------~~------~---~------~~~~~~~~~~~~~~~~~~~v~r~~ 242 (746)
.+.-..++.+.++.++++++.-++..-+.+. ++ + . ...-..-...-++..+.+|.+..+
T Consensus 185 ~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~l 264 (414)
T PF03390_consen 185 EEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVL 264 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455556777888888888887776544211 00 0 0 000011122223334445555544
Q ss_pred HHHHHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchhhHH---HHHhhHhHHHhhHHHHHHHHhhc-cCcccccchh
Q 047826 243 MLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLGSAL---VNKFDTMISGFFLPIFVTTSAMR-LHDLSLHTFN 318 (746)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l---~~kl~~~~~~~f~PiFF~~~G~~-~d~~~l~~~~ 318 (746)
+..+. ++|...-..++=.++.-..-..+++ .++...+...-+.+-..+.+|.. +|++++....
T Consensus 265 l~~~i-------------~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~ 331 (414)
T PF03390_consen 265 LSKLI-------------GIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAF 331 (414)
T ss_pred HHHhc-------------CCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHh
Confidence 44433 3444433333333332221111222 33555555566666677778988 9998877655
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHhH-HHHHHHHHHhhhcCCCCC
Q 047826 319 SLIWHNIALAGLAALVKFGACALLLLYWKMHRNDA-MALALIMNIK-GIVEMAFYTFASDGRYVS 381 (746)
Q Consensus 319 ~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~-~~lg~~m~~k-G~v~l~~~~~~~~~~~i~ 381 (746)
+| .-+++++..+++-.+++++.+|+.|+-+-|+ ...|+.|+.+ |.=++++.+.+...+++.
T Consensus 332 t~--~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 332 TP--QYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 54 3456666677888899999999999866555 4455466555 555677777776666655
No 68
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.22 E-value=0.6 Score=50.29 Aligned_cols=266 Identities=14% Similarity=0.087 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHhhcccChHHHHhchhhH---HHHHHHHHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhhccHHH
Q 047826 98 GSMGNIGIAFFIFQSGVKMDISMVAKVGRKA---WYIGILSVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPV 171 (746)
Q Consensus 98 ~~la~lgl~~llF~~Gle~d~~~l~~~~~~~---~~i~~~~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~v 171 (746)
+.....++..++|..|+.++.+++++..++. ...-...+++.-++ ++++.. ++ ....+..|..+...-++.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll---~~~~~~l~~~~~~~~l~~Gl~~~~~lPtT 106 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLL---GFGLSRLFPAFLPPELALGLLILACLPTT 106 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHH---HHHHHHHhhccCCHHHHHHHHHHhhCCch
Confidence 3556777888889999999999998866543 22222233332223 333333 22 133355555543322211
Q ss_pred -HHH-HHhhccccCCchhHHHHHHHhHHhHHHHHHHHHHHHH-hhc-C--CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 172 -IFC-LLTHLKILNSELGRLAQSSAIVADFLSYATILFLTLS-QVA-Y--SSPPKAIQLCVYILTFIVIVMVVVRPAMLL 245 (746)
Q Consensus 172 -v~~-il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~ 245 (746)
-.. .+.. ..+.+ -..++..+.++.+++.++.-+.... .++ + .+....+..++..++.-.+.+-+.|+...+
T Consensus 107 v~S~v~~T~--~AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~~~~ 183 (313)
T PF13593_consen 107 VSSSVVLTR--LAGGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRWVPK 183 (313)
T ss_pred hhHHHHHHH--HcCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222 12222 3455666788888888887544332 212 1 122334444444444444555555554443
Q ss_pred HHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhh-ccCc-ccccchhhhHHH
Q 047826 246 IARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAM-RLHD-LSLHTFNSLIWH 323 (746)
Q Consensus 246 ~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~-~~d~-~~l~~~~~~~~~ 323 (746)
..+|. ++...+++.. .+.+-+|-..++. .-+. ..+... .. ..
T Consensus 184 ~~~~~--------------------------------~~~~~~~~~~--~ll~iv~~~fs~~~~~~~~~~~~~~-~~-~~ 227 (313)
T PF13593_consen 184 WVARH--------------------------------KKPLSLLSQL--ALLLIVYSAFSSAFAQGAWHSVSAA-AL-AL 227 (313)
T ss_pred HHHHH--------------------------------HHHHHHHHHH--HHHHHHHHHHHHHHhhchhhhCCHH-HH-HH
Confidence 33331 1223344443 2233334433333 1111 122211 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHH-HHHHHHhhhcCC-CCChhhHHHHHHHHHHHHhhhHH
Q 047826 324 NIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIV-EMAFYTFASDGR-YVSPNMFRFMLGVVIVTGSVVPI 401 (746)
Q Consensus 324 ~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v-~l~~~~~~~~~~-~i~~~~~~~lv~~~lltt~i~~~ 401 (746)
...+.+...+.-+..++..++..+++.+|...+.+.-+.|... .+-+++..+... ..+ ..--.+++.-...-++.+.
T Consensus 228 ~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~-~~~lP~~iyh~~Ql~~~s~ 306 (313)
T PF13593_consen 228 IVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLG-LIVLPLMIYHPLQLFVGSF 306 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccc-hhhhHHHHHHHHHHHHHHH
Confidence 2222222333344566778888999999988877755666433 333444443321 111 1122223333444455556
Q ss_pred HHHhh
Q 047826 402 LVRKL 406 (746)
Q Consensus 402 l~~~~ 406 (746)
+.+++
T Consensus 307 la~~~ 311 (313)
T PF13593_consen 307 LASRL 311 (313)
T ss_pred HHHHH
Confidence 66554
No 69
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.04 E-value=5.4 Score=49.56 Aligned_cols=109 Identities=9% Similarity=0.072 Sum_probs=69.2
Q ss_pred CCCCCcceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHH
Q 047826 424 CKPESELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKK 503 (746)
Q Consensus 424 ~~~~~e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 503 (746)
+..|...++|+.+.+|++.+.+++++..+. |+.. -..+.|+++-+.+.. . ++.++..++.++
T Consensus 570 h~knwrPqiLvl~~~p~~~~~Ll~f~~~l~--~~~g-l~i~~~v~~~~~~~~-----~----------~~~~~~~~~~~~ 631 (953)
T TIGR00930 570 HVKNWRPQCLVLTGPPVCRPALLDFASQFT--KGKG-LMICGSVIQGPRLEC-----V----------KEAQAAEAKIQT 631 (953)
T ss_pred CccccCCeEEEEeCCCcCcHHHHHHHHHhc--cCCc-EEEEEEEecCchhhh-----H----------HHHHHHHHHHHH
Confidence 345667889999999999999999999997 3333 445568877432110 0 011122222222
Q ss_pred hccccCcceEEEEEEEEcCCCChHHHHHHHHhhc-----CCcEEEecCccccccCC
Q 047826 504 FGGLHWGAASINAFTAISPPDLMHDDICTLALDK-----LASLVILPFHRTWYIDG 554 (746)
Q Consensus 504 ~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~-----~a~lII~p~h~~~~~dg 554 (746)
+-+. . +++.|..+..-.++.+++.++.+.. +++.++|||...|+.+.
T Consensus 632 ~~~~--~--~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~ 683 (953)
T TIGR00930 632 WLEK--N--KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAE 683 (953)
T ss_pred HHHH--h--CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhcc
Confidence 2222 1 2233333333489999999998755 78999999999887544
No 70
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.01 E-value=2.5 Score=46.94 Aligned_cols=294 Identities=12% Similarity=0.049 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHhhhCCChHH-HHHHH--HHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHH
Q 047826 38 IMFLIATMLIISQAFHS---VLKRFGIPIFI-SQIFA--GLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQ 111 (746)
Q Consensus 38 ~l~~i~~il~~a~~~~~---l~~rl~~P~iv-~~Il~--GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~ 111 (746)
.+.-.++++++++.+-. +++|+.+|.-| |-+++ +..++|..++..- .|+ .+ + .+.-+.++.=.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~-----~fd--~~-l---~~~lm~~fFat 76 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEV-----NFD--FS-L---RDPLMLIFFTT 76 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEE-----EcC--hh-H---HHHHHHHHHHH
Confidence 34444555555555443 68899999755 33332 3445666555421 122 12 1 12224445556
Q ss_pred hhcccChHHHHhchhhHHHHHHHH---HHHHHHhhhcceeeec-CC--hhHHHHHH-HHHhh--ccHHHHHHHHhh-ccc
Q 047826 112 SGVKMDISMVAKVGRKAWYIGILS---VIAPLVALIPGSMVPS-GG--GPTGLFIT-PLYYM--TAYPVIFCLLTH-LKI 181 (746)
Q Consensus 112 ~Gle~d~~~l~~~~~~~~~i~~~~---~~~p~~l~~~~~~~~~-~g--~~~~l~ig-~~ls~--Ts~~vv~~il~e-l~l 181 (746)
+|+.-+++.+||-+|+.......+ ...-.++ |..++. +| +...+..| +.+.- -......+.++| +|.
T Consensus 77 igLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~v---Gv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~ 153 (398)
T TIGR00210 77 IGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAV---GIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPVFYDNYGF 153 (398)
T ss_pred hhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHHHHHHcCc
Confidence 788889999999888875554442 2233334 444333 44 23323221 11110 112334455644 564
Q ss_pred cCCchhHHHHHHHhHHhHHHHHHHHHHHH--HhhcCC-----C--------------ch-HHHHHHHHHHHHHHHHHHHH
Q 047826 182 LNSELGRLAQSSAIVADFLSYATILFLTL--SQVAYS-----S--------------PP-KAIQLCVYILTFIVIVMVVV 239 (746)
Q Consensus 182 ~~s~~g~l~ls~a~i~D~~~~~ll~i~~~--~~~~~~-----~--------------~~-~~~~~~~~~~~~~~~~~~v~ 239 (746)
. +--.+++++|.+.=+.+.++=..+.. ...+.. + .. ......+..+.++.++..+.
T Consensus 154 ~--~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~i~iai~iG 231 (398)
T TIGR00210 154 R--NATEIAIACATFGLVFGGIIGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETIALIAVCLLVG 231 (398)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 2 23455566655554444443221111 111000 0 00 00111222223333333333
Q ss_pred HHHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchh--hHHHHHhhHhHHHhhHHHHHHHHhhccCcccccch
Q 047826 240 RPAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLG--SALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTF 317 (746)
Q Consensus 240 r~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~--~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~ 317 (746)
. .+.+..+.. + ..++...+|++.|+++.+.-+.. .++.++.-+...++.+-+|.+..=+.+++..+.+.
T Consensus 232 ~-~i~~~l~~~--~------~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~ 302 (398)
T TIGR00210 232 Y-ELNDLVAKT--A------LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL 302 (398)
T ss_pred H-HHHHHHHHc--C------CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 2 233333332 1 25778889999999888742111 12333333445677777888888899999988764
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCCChHHHHHHHHHH
Q 047826 318 NSLIWHNIALAGLAALVKF-GACALLLLYWKMHRNDAMALALIM 360 (746)
Q Consensus 318 ~~~~~~~~~~~~~~~~~K~-~~~~~~~~~~~~~~~~~~~lg~~m 360 (746)
|.+ ++++.++..+.-. ...++.-|..+-+ .|+-.++...
T Consensus 303 --a~P-lliil~~q~i~~~l~~~fv~fr~mg~~-ydaaV~~ag~ 342 (398)
T TIGR00210 303 --AGP-IALILLVQVMFMALYAIFVTFRLMGKD-YDAAVLCAGH 342 (398)
T ss_pred --HHH-HHHHHHHHHHHHHHHHHHHhHHhccch-HHHHHHhccc
Confidence 334 3334334333333 4455666666655 6776644433
No 71
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.00 E-value=0.79 Score=49.74 Aligned_cols=293 Identities=14% Similarity=0.057 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhh
Q 047826 37 RIMFLIATMLIISQAFHS---VLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSG 113 (746)
Q Consensus 37 ~~l~~i~~il~~a~~~~~---l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~G 113 (746)
..+..+++++++++.+-. ++||+.+|..|.-=+...+++|.+.+.... +.=|+. .+ -+.=...+.-.+|
T Consensus 9 ~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~--~~~fd~---~l---~~~fmliFFttig 80 (404)
T COG0786 9 ETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGV--SLNFDT---SL---QDVFMLIFFATIG 80 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceE--EEeCCc---cc---ccHHHHHHHHHhc
Confidence 344455556666666554 788899998764434445556654433221 111111 01 1111233444679
Q ss_pred cccChHHHHhchhhHHHHHHHHHHHHH---Hhhhcceeeec-CC--hhHHHHHHHHHhh-----ccHHHHHHHHhhcccc
Q 047826 114 VKMDISMVAKVGRKAWYIGILSVIAPL---VALIPGSMVPS-GG--GPTGLFITPLYYM-----TAYPVIFCLLTHLKIL 182 (746)
Q Consensus 114 le~d~~~l~~~~~~~~~i~~~~~~~p~---~l~~~~~~~~~-~g--~~~~l~ig~~ls~-----Ts~~vv~~il~el~l~ 182 (746)
+..+++.+||-+|+..+.-.....+-. .+ |..++. +| +...+..|.+ +. |+ +...+.+.|++..
T Consensus 81 lsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~i---gi~la~~lgidpl~gllagsI-sl~GGHGta-AA~~~~f~~~G~~ 155 (404)
T COG0786 81 LSASFKLLKKGGKKLAIFLATAAGLAVLQNFI---GIGLAKLLGLDPLIGLLAGSI-SLVGGHGTA-AAWGPTFEDLGAE 155 (404)
T ss_pred cccchhHHHhcChhHHHHHHHHHHHHHHHHHH---HHHHHHHcCccHHHHHHhcce-eecCCCchH-HHHHHHHHhcCCc
Confidence 999999999999986543222221111 11 111111 22 2233332211 11 22 3445667777642
Q ss_pred CCchhHHHHHHHhHHhHHHHHHHHHHHHH-h-hc------CCCc----------------hHHHHHHHHHHHHHHHHHHH
Q 047826 183 NSELGRLAQSSAIVADFLSYATILFLTLS-Q-VA------YSSP----------------PKAIQLCVYILTFIVIVMVV 238 (746)
Q Consensus 183 ~s~~g~l~ls~a~i~D~~~~~ll~i~~~~-~-~~------~~~~----------------~~~~~~~~~~~~~~~~~~~v 238 (746)
.-..+++++|.+.=+.+.++=..+.-+ . .+ +... ....-.+...+.++.+|..+
T Consensus 156 --~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~v 233 (404)
T COG0786 156 --GATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAV 233 (404)
T ss_pred --chHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHH
Confidence 245666777666555554443222111 0 10 0000 00112334445555566655
Q ss_pred HHHHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchh--hHHHHHhhHhHHHhhHHHHHHHHhhccCcccccc
Q 047826 239 VRPAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLG--SALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHT 316 (746)
Q Consensus 239 ~r~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~--~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~ 316 (746)
...+-.|+-. -..-++...++++.|+++.+.-+.. .++.++.-+.+.++-+-+|....=|++.+..+.+
T Consensus 234 G~~i~~~l~~---------~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~ 304 (404)
T COG0786 234 GKIINQLLKS---------LGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD 304 (404)
T ss_pred HHHHHHHHhh---------ccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 5555555533 1225778899999999998742211 1123333334567778888888888999888875
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 047826 317 FNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMA 355 (746)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~ 355 (746)
. |++.++++.+-..+.-+...+...|..+-++..+..
T Consensus 305 l--~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 305 L--ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred c--cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 4 234455555555555666777777888866644443
No 72
>PRK10490 sensor protein KdpD; Provisional
Probab=95.84 E-value=0.033 Score=68.71 Aligned_cols=124 Identities=7% Similarity=0.003 Sum_probs=85.0
Q ss_pred CcceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccc
Q 047826 428 SELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGL 507 (746)
Q Consensus 428 ~e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 507 (746)
...|||||++.+.+...+++-+..++.. ...+.+++|+..-..+ .. . ....+++.+.++ ++++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~--~~--~----------~~~~~~l~~~~~-lA~~ 311 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLH--RL--P----------EKKRRAILSALR-LAQE 311 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcC--cC--C----------HHHHHHHHHHHH-HHHH
Confidence 5678999999999999999999998843 5578999997532111 10 0 112234444443 5554
Q ss_pred cCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCC-CceEEEe
Q 047826 508 HWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAP-CSVGILI 582 (746)
Q Consensus 508 ~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~Ap-csVgilv 582 (746)
..+ ++... . .+++.+.|.+.|++++++.||||-.++.+. + ..+|+.+++++.+| -+|-|+-
T Consensus 312 lGa--~~~~~---~-~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 312 LGA--ETATL---S-DPAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred cCC--EEEEE---e-CCCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEEe
Confidence 322 23322 1 389999999999999999999997655331 1 13578999999997 7776764
No 73
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=95.06 E-value=1.4 Score=47.44 Aligned_cols=86 Identities=14% Similarity=0.037 Sum_probs=58.1
Q ss_pred HHhhHHHHHHHHhhc-cCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHHHhHH-HHHHHH
Q 047826 294 SGFFLPIFVTTSAMR-LHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALA-LIMNIKG-IVEMAF 370 (746)
Q Consensus 294 ~~~f~PiFF~~~G~~-~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg-~~m~~kG-~v~l~~ 370 (746)
+.+.-|+.+ .+|.. +|+..+.+...| .-+++.+..+++-..+.++.+|+.|+-+-|+-..+ +.|+.+| .-++++
T Consensus 326 k~~t~~Lm~-giGv~ytdl~ev~~alt~--~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaV 402 (438)
T COG3493 326 KNLTWPLMA-GIGVAYTDLNEVAAALTW--QNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAV 402 (438)
T ss_pred HhhHHHHHH-hhhhccccHHHHHHHhch--hHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHH
Confidence 445555444 46666 898887666565 24455555667788899999999998666665555 8887775 456667
Q ss_pred HHhhhcCCCCCh
Q 047826 371 YTFASDGRYVSP 382 (746)
Q Consensus 371 ~~~~~~~~~i~~ 382 (746)
++.+-..++++-
T Consensus 403 LsAa~RM~LmpF 414 (438)
T COG3493 403 LSAADRMELMPF 414 (438)
T ss_pred hhhcchhccccH
Confidence 776666666653
No 74
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.34 E-value=1 Score=53.38 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=61.0
Q ss_pred HHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHH
Q 047826 50 QAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAW 129 (746)
Q Consensus 50 ~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~ 129 (746)
....++...+|++..+|-.++|++++.+-+.. . -...++.+..+-+.+|+..+|+.+|+..+...+...+
T Consensus 229 ~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~------~----le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il 298 (621)
T PRK03562 229 FGFGLLMEEVGLSMALGAFLAGVLLASSEYRH------A----LESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRIL 298 (621)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHhcCCccHH------H----HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 33456667788888888888888888532111 0 2344555666666677788899999998876654433
Q ss_pred HHHHHHHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhh
Q 047826 130 YIGILSVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYM 166 (746)
Q Consensus 130 ~i~~~~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~ 166 (746)
.+.+..++.=++. +++.+. +| ...++.+|..++.
T Consensus 299 ~~~~~~~~~K~~~---~~~~~~~~g~~~~~a~~~gl~L~~ 335 (621)
T PRK03562 299 ILLLGFLAIKIAM---LWLLARPLGVPRKQRRWFAVLLGQ 335 (621)
T ss_pred HHHHHHHHHHHHH---HHHHHHHhCCCHhHHHHHHHHHhc
Confidence 3222222222222 222222 34 3666777766654
No 75
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.22 E-value=0.24 Score=48.13 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=76.5
Q ss_pred hhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHH---HHhchhhHHHHHH
Q 047826 57 KRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISM---VAKVGRKAWYIGI 133 (746)
Q Consensus 57 ~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~---l~~~~~~~~~i~~ 133 (746)
+++++-...|-+++|+++|-. +...+. .. .....+.+.++|+.+|++.+|++--++. +|+.+.+...+++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~---~~--~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~ 91 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPI---FL--PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGV 91 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCC---CC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 556666777899999998853 221110 01 3456678899999999999999988764 6667777777777
Q ss_pred HHHHHHHHhhhcceeeec--CChhHHHHHHHH-HhhccHHHHHHHHhh
Q 047826 134 LSVIAPLVALIPGSMVPS--GGGPTGLFITPL-YYMTAYPVIFCLLTH 178 (746)
Q Consensus 134 ~~~~~p~~l~~~~~~~~~--~g~~~~l~ig~~-ls~Ts~~vv~~il~e 178 (746)
.-.++|.++ ++.+++ ++.......|.. =+.|++|.+....+.
T Consensus 92 ~i~~~~~~~---~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 92 IITLVPLLI---ALVIGRYLFKLNPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHccccCcHHHHHHHHh
Confidence 777777777 666655 453344444443 367888888776654
No 76
>PRK03818 putative transporter; Validated
Probab=94.22 E-value=0.27 Score=57.19 Aligned_cols=130 Identities=13% Similarity=0.255 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHH-HhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccC
Q 047826 39 MFLIATMLIISQAFHSV-LKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMD 117 (746)
Q Consensus 39 l~~i~~il~~a~~~~~l-~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d 117 (746)
++.+++.+.++.+++.+ ++.+++- +.|-+++|+++|-. + +.+. .-. .......+.++|+.+|+|.+|++.-
T Consensus 8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~--~--~~~~-~~~--~~~~~~~~~~~gl~lFv~~vGl~~G 79 (552)
T PRK03818 8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHF--V--SQFG-LTL--DSDMLHFIQEFGLILFVYTIGIQVG 79 (552)
T ss_pred HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcc--c--cccC-ccc--ChHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444455544444441 1123333 37888899988842 1 1110 001 3456777899999999999999998
Q ss_pred hHH---HHhchhhHHHHHHHHHHHHHHhhhcceeeec-CChhHHHHHHHH-HhhccHHHHHHHHhhc
Q 047826 118 ISM---VAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GGGPTGLFITPL-YYMTAYPVIFCLLTHL 179 (746)
Q Consensus 118 ~~~---l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~~~~l~ig~~-ls~Ts~~vv~~il~el 179 (746)
+.. +|+.+.+...+++.-.++|.++ ++++.+ ++.......|+. =+.|++|.+....+..
T Consensus 80 p~f~~~l~~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 80 PGFFSSLRKSGLRLNLFAVLIVILGGLV---TAILHKLFGIPLPVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHhhccccccHHHHHHHHHH
Confidence 875 5666666666777777777777 666555 563333444443 3678888877765433
No 77
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.13 E-value=2 Score=46.46 Aligned_cols=249 Identities=9% Similarity=-0.002 Sum_probs=138.2
Q ss_pred cccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC--h-hHHHHHHHHHh-----hccHHHHHHHHhh-ccccC
Q 047826 114 VKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG--G-PTGLFITPLYY-----MTAYPVIFCLLTH-LKILN 183 (746)
Q Consensus 114 le~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g--~-~~~l~ig~~ls-----~Ts~~vv~~il~e-l~l~~ 183 (746)
+.||-+.+.|...|-+..-+.+.+..+++ +.+++. +| + ...+.+..-+. .-+.|. ..+.++ ++...
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~---g~lvG~l~G~~~~~~~~~i~lPIm~GG~GaGavPL-S~~Y~~~~g~~~ 115 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIV---GILVGTLFGLGFDHSLMYIVMPIMAGGVGAGIVPL-SIIYSAITGRSS 115 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCHhHhhheeeehhcCCCcccchhhH-HHHHHHHhCCCH
Confidence 37888888888888666666666665555 544444 33 2 22222221111 112222 112221 23333
Q ss_pred CchhHHHHHHHhHHhHHHHHHHHHHHHHhh------cCCC--------c-----h--H--HHHHHHHHHHHHHHHHHHHH
Q 047826 184 SELGRLAQSSAIVADFLSYATILFLTLSQV------AYSS--------P-----P--K--AIQLCVYILTFIVIVMVVVR 240 (746)
Q Consensus 184 s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~------~~~~--------~-----~--~--~~~~~~~~~~~~~~~~~v~r 240 (746)
++.-..++.+.++.++++++.-++..-+.. +++. . . . .-......-++....+|.+.
T Consensus 116 ~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g 195 (347)
T TIGR00783 116 EEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMAG 195 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 344555677778888888888776643311 1000 0 0 0 00111222223334445544
Q ss_pred HHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhH---hHHHhhHHHHHHHHhhc-cCcccccc
Q 047826 241 PAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDT---MISGFFLPIFVTTSAMR-LHDLSLHT 316 (746)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~---~~~~~f~PiFF~~~G~~-~d~~~l~~ 316 (746)
.++. ..| ++|+..-+.++|.++....-..+++.++-.. +...-+.+..++.+|+. +|++.+.+
T Consensus 196 ~l~~----~~~---------~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~ 262 (347)
T TIGR00783 196 GLLK----SFP---------GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVA 262 (347)
T ss_pred HHHH----hcc---------cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHH
Confidence 3332 222 6788888899999887765455555554443 33333444445556766 78888765
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH-HHHHHhH-HHHHHHHHHhhhcCCCCC
Q 047826 317 FNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMAL-ALIMNIK-GIVEMAFYTFASDGRYVS 381 (746)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~l-g~~m~~k-G~v~l~~~~~~~~~~~i~ 381 (746)
..+| ..+++++..+++-.+++++.+|+.|+-+-|+-.. |+.|+.+ |.-++++++.+...+++.
T Consensus 263 a~t~--~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 263 ALSW--QFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred Hhch--hHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 5343 3556666677888999999999999866665555 5566665 455666777666666654
No 78
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=94.11 E-value=0.71 Score=50.87 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=64.1
Q ss_pred HHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHHHhHHHHHHHHH
Q 047826 293 ISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALA-LIMNIKGIVEMAFY 371 (746)
Q Consensus 293 ~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg-~~m~~kG~v~l~~~ 371 (746)
..++|+-.||+.+|+..++..+.+....+.....+.....+...+.....+..++.++.-.+..| ..+..-=..+.++.
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g 144 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH
Confidence 45667778999999999988775431111112222222334565555666677788776555443 22221112333444
Q ss_pred HhhhcC-CCCChhhH--HHHHHHHHHHHhhhHHHHHhhcCcc
Q 047826 372 TFASDG-RYVSPNMF--RFMLGVVIVTGSVVPILVRKLYDPS 410 (746)
Q Consensus 372 ~~~~~~-~~i~~~~~--~~lv~~~lltt~i~~~l~~~~~~p~ 410 (746)
....+. |+-+.... +.-.+..+...+++.|+.+++.|+.
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 555555 55333222 2222333445677889999998643
No 79
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.98 E-value=1.3 Score=52.19 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=48.0
Q ss_pred HHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhH
Q 047826 51 AFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKA 128 (746)
Q Consensus 51 ~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~ 128 (746)
...++.+.+|++.++|-.++|++++.+-+.. . -...++.+.++-+.+|+..+|+.+|+..+...+...
T Consensus 227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~------~----l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~i 294 (601)
T PRK03659 227 GSALFMDALGLSMALGTFIAGVLLAESEYRH------E----LEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWV 294 (601)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCCchHH------H----HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHH
Confidence 3445667889999999999999998642111 0 233455666666777888999999999887765543
No 80
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.83 E-value=0.23 Score=49.31 Aligned_cols=124 Identities=20% Similarity=0.355 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccCh-----HHHHhchhhHHHHHHHHHHHH
Q 047826 65 ISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDI-----SMVAKVGRKAWYIGILSVIAP 139 (746)
Q Consensus 65 v~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~i~~~~~~~p 139 (746)
++.+++|+++|-..... ....+...+..+..++|.+|+++-- +.+|+.++|++.+.+...+-.
T Consensus 2 l~~li~Gi~lG~~~~~~------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGS 69 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGS 69 (191)
T ss_pred eeeHHHHHHHHHHhccc------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34567888888543211 1122667888899999999998843 456777789888887777766
Q ss_pred HHhhhcceeeec-CC--hhHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHhHHhHHHHHHHHH
Q 047826 140 LVALIPGSMVPS-GG--GPTGLFITPLYYMTAYPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATILF 207 (746)
Q Consensus 140 ~~l~~~~~~~~~-~g--~~~~l~ig~~ls~Ts~~vv~~il~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i 207 (746)
++. +.+++. ++ ..+++.+++-+.- +.....++.|++ +.+.|.++.-+=++-+++++++.-+
T Consensus 70 llg---g~l~~~ll~~~~~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~ 133 (191)
T PF03956_consen 70 LLG---GLLASLLLGLSLKESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPL 133 (191)
T ss_pred HHH---HHHHHHHhcCCHHHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 555444 44 2444444433321 222222333332 4456666555555555555444433
No 81
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=93.60 E-value=2.1 Score=45.02 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=76.3
Q ss_pred chhhHHHHHHHHhhcCCCCchhh-HHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHH-HHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGS-ALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVK-FGA 338 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~-~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K-~~~ 338 (746)
+++..+|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|++.+.+... ....+.+..++.- ++.
T Consensus 15 ~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~~~---~~~~~~~~~~~~~~~~~ 89 (273)
T TIGR00932 15 GIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKLRK---AAFGVGVLQVLVPGVLL 89 (273)
T ss_pred CCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5667788888898886431 110 001234443 45566677788999999988765321 1222223333333 333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhh
Q 047826 339 CALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSV 398 (746)
Q Consensus 339 ~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i 398 (746)
++...++.+.++.+++.+|..+++-. .-++..+..+.+..+.+.-..++..+++.-.+
T Consensus 90 ~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 90 GLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence 44556778999999999999887553 33445555566666655544444444444333
No 82
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=93.39 E-value=1.1 Score=48.04 Aligned_cols=146 Identities=14% Similarity=-0.000 Sum_probs=93.7
Q ss_pred ccchhhHHHHHHHHhhcCC-CCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHH
Q 047826 259 TGFEFTVLGLYILGLAVPH-GPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFG 337 (746)
Q Consensus 259 ~~G~~~~lgafiaGl~i~~-~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~ 337 (746)
.+++++.+=|.+.|+++.| .....+.+.+-++. ....++.+=-+..|.++++.++.+. +| ......++..++.=.+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~~-G~-~~~~~~~~~v~~~~~~ 99 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILAL-GW-KGLLIIIIVVILTFLL 99 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHHh-Cc-cHHHHHHHHHHHHHHH
Confidence 4488899999999999998 54444555444443 3467888888999999999988754 43 2223333333333444
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhh---HHHHHHHHHHHHhhhHHHHHhhcCc
Q 047826 338 ACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNM---FRFMLGVVIVTGSVVPILVRKLYDP 409 (746)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~---~~~lv~~~lltt~i~~~l~~~~~~p 409 (746)
+.++..|.+|++++.+..++...+.=|.-+++...-..+.+ +++. ...+.+...+..++-|.+.+++.-+
T Consensus 100 ~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 100 TYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHALGLS 172 (305)
T ss_pred HHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44455599999999999999998888877776655444443 2222 2222333333444566666666544
No 83
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.77 E-value=5.5 Score=46.66 Aligned_cols=117 Identities=8% Similarity=-0.007 Sum_probs=66.8
Q ss_pred chhhHHHHHHHHhhcCCCC-chhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGP-PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGAC 339 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~-~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~ 339 (746)
|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++.+..|+++|++.+.+... .........++.=++.+
T Consensus 29 ~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~---~~~~~~~~~~~~~~~~~ 103 (558)
T PRK10669 29 RISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKS---IAIPGAIAQIAVATLLG 103 (558)
T ss_pred CCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhh---HHHHHHHHHHHHHHHHH
Confidence 5667888888888886431 11111 1223333 45556666778899999988753311 11111111222223334
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhh
Q 047826 340 ALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNM 384 (746)
Q Consensus 340 ~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~ 384 (746)
+...+..++++.+++.+|..++.-.. .++..+..+.|.++.+.
T Consensus 104 ~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 104 MALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 44556778999999999987766333 34555666777666533
No 84
>PRK05326 potassium/proton antiporter; Reviewed
Probab=92.68 E-value=2.3 Score=49.84 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHhhcCCCCch--hhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHH-HHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPL--GSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALV-KFG 337 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~--~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~-K~~ 337 (746)
|++.+++-.++|+++.....- ...-.+-.+ ....+.+++.....|+++|+..+.+. . .....+....++. =.+
T Consensus 29 ~~P~ll~~il~GillGp~~lg~i~~~~~~~~~-~i~~l~L~~iLF~~Gl~~~~~~l~~~-~--~~~~~la~~gv~~t~~~ 104 (562)
T PRK05326 29 GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAY-LVGNLALAVILFDGGLRTRWSSFRPA-L--GPALSLATLGVLITAGL 104 (562)
T ss_pred CCcHHHHHHHHHHHhCccccCCcccCcHHHHH-HHHHHHHHHHHHcCccCCCHHHHHHH-H--HHHHHHHHHHHHHHHHH
Confidence 667788888888888754211 000012233 34678888888899999999887643 2 2233333333332 233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhHHHH
Q 047826 338 ACALLLLYWKMHRNDAMALALIMNIKGIV 366 (746)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~lg~~m~~kG~v 366 (746)
.++.+.++.+++|.+++.+|..+++-...
T Consensus 105 ~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 105 TGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 34555567799999999999887766543
No 85
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.30 E-value=0.84 Score=48.75 Aligned_cols=132 Identities=12% Similarity=0.009 Sum_probs=89.9
Q ss_pred cccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHH
Q 047826 258 RTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFG 337 (746)
Q Consensus 258 ~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~ 337 (746)
..+|+++..=|.+.|+++...+..+.+...-++. ....++.+=.+..|++++++++.+. ++ -.+.+....+..-++
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~~-G~--~~v~~~~~~l~~t~~ 108 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIADV-GG--SGVLIIAITLSSTFL 108 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHHc-Cc--cHHHHHHHHHHHHHH
Confidence 3457889999999999998654444443333333 4567778778899999999988654 32 244555556666777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH
Q 047826 338 ACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVT 395 (746)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~llt 395 (746)
.++..++++|++++.++.+|...+.=|.-+++...-..+.. ++|+-..+...+++.
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~--~~eva~aIa~V~lfg 164 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAE--EEEVAVAIAVVVLFG 164 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCC--ccccceehhhHHHHH
Confidence 88888889999999999999998888877776555433322 334433333333443
No 86
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=92.25 E-value=0.6 Score=55.03 Aligned_cols=127 Identities=11% Similarity=-0.011 Sum_probs=81.2
Q ss_pred CCcceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhcc
Q 047826 427 ESELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGG 506 (746)
Q Consensus 427 ~~e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 506 (746)
....|||||++.......+++-+..++.. .....+++|+.- +++... .+...+-+..-.+.++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~~-~~~~~~--------------~~~~~~~l~~~~~Lae 308 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVET-PELHRL--------------SEKEARRLHENLRLAE 308 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEec-cccccc--------------cHHHHHHHHHHHHHHH
Confidence 34579999999999999999988888843 446788999743 221100 0011122223333444
Q ss_pred ccCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCC-CceEEEe
Q 047826 507 LHWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAP-CSVGILI 582 (746)
Q Consensus 507 ~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~Ap-csVgilv 582 (746)
+..+ .+.+ ..+ .++.+.|.+.|++.++.-||+|-+.+++.... ..+++.+++++++| -+|-|+-
T Consensus 309 ~lGa--e~~~--l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~------~~~~l~~~L~~~~~~idv~ii~ 373 (890)
T COG2205 309 ELGA--EIVT--LYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRL------FKGSLADRLAREAPGIDVHIVA 373 (890)
T ss_pred HhCC--eEEE--EeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHH------hcccHHHHHHhcCCCceEEEee
Confidence 3222 2222 233 89999999999999999999997665332111 24788899999986 5655543
No 87
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=92.16 E-value=0.94 Score=44.87 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcccChHHHHhchhhHHH--HHHH-HHHHHHHhhhcceeeec--CChhHHHHHHHHHhhcc-HHHHHHHH
Q 047826 103 IGIAFFIFQSGVKMDISMVAKVGRKAWY--IGIL-SVIAPLVALIPGSMVPS--GGGPTGLFITPLYYMTA-YPVIFCLL 176 (746)
Q Consensus 103 lgl~~llF~~Gle~d~~~l~~~~~~~~~--i~~~-~~~~p~~l~~~~~~~~~--~g~~~~l~ig~~ls~Ts-~~vv~~il 176 (746)
+.+.+.||..|++++++++++..|+... .++. .+++.-++ ++++++ ++.......|..+...+ -+..+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Pll---a~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLL---AFGLAWLLLPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHH---HHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 4577899999999999999887766433 2332 23332233 444442 33223334443332211 12223333
Q ss_pred hhccccCCchhHHHHHHHhHHhHHHHHHHHHHHH
Q 047826 177 THLKILNSELGRLAQSSAIVADFLSYATILFLTL 210 (746)
Q Consensus 177 ~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~ 210 (746)
.++ .+.+. .++++...++.+++.++.-+...
T Consensus 79 t~l--~~Gd~-~ls~~lt~istll~~~~~P~~~~ 109 (187)
T PF01758_consen 79 TYL--AGGDV-ALSVSLTLISTLLAPFLMPLLLY 109 (187)
T ss_dssp HHH--TT--H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--hCCCc-ccccceeeHHHHHHHHHHHHHHH
Confidence 332 23332 35566677777777776654433
No 88
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=91.90 E-value=0.39 Score=40.78 Aligned_cols=49 Identities=20% Similarity=0.066 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhH-HHHHHHhccCCCceE
Q 047826 525 LMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVR-NLNLCVLEKAPCSVG 579 (746)
Q Consensus 525 ~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~-~~n~~Vl~~ApcsVg 579 (746)
.+++.+.+.|++.++|.|++|.|.....+..+ .+ ++..++.+.++|+|.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCcee
Confidence 88999999999999999999998875433322 33 667899999999963
No 89
>PRK10490 sensor protein KdpD; Provisional
Probab=91.48 E-value=0.57 Score=57.97 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=75.5
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCCCeEEEEEEecC-hhHH
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSEYIRYVKHVVKD-GAET 680 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~v~y~e~~v~~-g~~~ 680 (746)
..+|+|...|+|..+..++.+.|||+..++.+++++|.+++....++.+++.-.+.++ +..+-...+....-.| .+.+
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~lGa~~~~~~~~dva~~i 328 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQELGAETATLSDPAEEKAV 328 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCCHHHHH
Confidence 5689999999999999999999999999999999999876432222222221112222 2211012221111111 3446
Q ss_pred HHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEE
Q 047826 681 VKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVM 740 (746)
Q Consensus 681 ~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvv 740 (746)
++++++. +.+-||+|++++. -| + --|.+.|-|.... .+.-|.||
T Consensus 329 ~~~A~~~--~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~--~~idi~iv 372 (895)
T PRK10490 329 LRYAREH--NLGKIIIGRRASR---------RW--W-RRESFADRLARLG--PDLDLVIV 372 (895)
T ss_pred HHHHHHh--CCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhC--CCCCEEEE
Confidence 7777765 8999999999753 14 1 1356677666652 34456666
No 90
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.03 E-value=0.94 Score=52.86 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=76.6
Q ss_pred hhCCChHHHHHHHHHhcCccccccccc-cccccCcccHHHHHHHHHHHHHHHHHHhhcccChHH---HHhchhhHHHHHH
Q 047826 58 RFGIPIFISQIFAGLLLSRPVLQVIKV-ADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISM---VAKVGRKAWYIGI 133 (746)
Q Consensus 58 rl~~P~iv~~Il~GiilGP~~Lg~~~~-~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~---l~~~~~~~~~i~~ 133 (746)
++.+-...|-+++|+++|- ++...+ +.. . .......+.++|+.+|++.+|+.--++. +++.+.+...+|.
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~--~--p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGN--I--PSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCccee--c--CHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3445566788999999885 332211 100 1 3456677899999999999999988764 6666777777777
Q ss_pred HHHHHHHHhhhcceeeec--CChhHHHHHHH-HHhhccHHHHHHHHhhc
Q 047826 134 LSVIAPLVALIPGSMVPS--GGGPTGLFITP-LYYMTAYPVIFCLLTHL 179 (746)
Q Consensus 134 ~~~~~p~~l~~~~~~~~~--~g~~~~l~ig~-~ls~Ts~~vv~~il~el 179 (746)
+-.++|.++ ++.+++ ++.......|. +-+.|++|.+....+..
T Consensus 486 ~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLII---TMLIGKYVLKYDPALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHH---HHHHHHHHhCCCHHHHHHHhhccCCCcHHHHHHHHhc
Confidence 777778777 666663 55334455554 45789999887766543
No 91
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=90.49 E-value=4.6 Score=49.56 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=33.4
Q ss_pred CCCcceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeec
Q 047826 426 PESELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKL 470 (746)
Q Consensus 426 ~~~e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel 470 (746)
.+...||.++.-.-.+=+.++.++..++ ++..+.++++|.+.-
T Consensus 627 ~~~~~~v~~~F~GG~DDREALa~a~rma--~~p~v~lTVirf~~~ 669 (832)
T PLN03159 627 NQVSHHVAVLFFGGPDDREALAYAWRMS--EHPGITLTVMRFIPG 669 (832)
T ss_pred cccceeEEEEecCCcchHHHHHHHHHHh--cCCCeEEEEEEEEcc
Confidence 3456799999877777788888988888 445589999999864
No 92
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=90.14 E-value=6.7 Score=43.79 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHH-HHHHHHHHHhhcccChHHH
Q 047826 43 ATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGN-IGIAFFIFQSGVKMDISMV 121 (746)
Q Consensus 43 ~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~-lgl~~llF~~Gle~d~~~l 121 (746)
..++.+.....++.+.+|++.++|--++|+++..+-....+ -.+.++.+++ +=+-+|...+|+++|++.+
T Consensus 225 ~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~---------l~~~i~~~~~~~fiplFFi~vG~~~dl~~l 295 (397)
T COG0475 225 LFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHE---------LEEKIEPFGDGLFIPLFFISVGMSLDLGVL 295 (397)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHH---------HHHHHHhHHhHHHHHHHHHHhhHHcCHHHH
Confidence 33444555567888899999999999999999875322111 3456777777 7777888999999999999
Q ss_pred HhchhhHHH
Q 047826 122 AKVGRKAWY 130 (746)
Q Consensus 122 ~~~~~~~~~ 130 (746)
..+...+..
T Consensus 296 ~~~~~~~l~ 304 (397)
T COG0475 296 LENLLLILL 304 (397)
T ss_pred hccHHHHHH
Confidence 888766443
No 93
>COG2855 Predicted membrane protein [Function unknown]
Probab=89.88 E-value=32 Score=37.08 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=67.7
Q ss_pred HHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHH
Q 047826 55 VLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGIL 134 (746)
Q Consensus 55 l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~ 134 (746)
.....++|..+--|+.|+++|.. ...+. ...+...-.-+.+=++|++ +.|.+++++++...+.+.+.+-..
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l--~~~~~---~~~~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGIL--PQIPA---QTSAGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhcc--ccchh---hhccchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 33446799999999999999942 22221 1111112334556677877 679999999999999998887777
Q ss_pred HHHHHHHhhhcceeeec-CC--hhHHHHHHHHHhh
Q 047826 135 SVIAPLVALIPGSMVPS-GG--GPTGLFITPLYYM 166 (746)
Q Consensus 135 ~~~~p~~l~~~~~~~~~-~g--~~~~l~ig~~ls~ 166 (746)
.+...+++ ++.++. +| ...++++|.--|.
T Consensus 102 ~l~~t~~~---~~~lg~~lgld~~~a~Lia~GssI 133 (334)
T COG2855 102 TLSSTFLF---AYFLGKLLGLDKKLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHH---HHHHHHHhCCCHHHHHHHHccchh
Confidence 77777777 666665 55 4666666654443
No 94
>PRK04972 putative transporter; Provisional
Probab=89.46 E-value=0.73 Score=53.67 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHH-HhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHH--
Q 047826 44 TMLIISQAFHSV-LKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISM-- 120 (746)
Q Consensus 44 ~il~~a~~~~~l-~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~-- 120 (746)
+.+.++.+++.+ ++.+++-...|-+++|+++|-. +.- .| ..+.++|+.+|+|.+|++.-+..
T Consensus 19 ~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~--~~~-------~~------~~~~~~gl~lF~~~vG~~~Gp~F~~ 83 (558)
T PRK04972 19 VVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQ--HFS-------IN------TDALNLGFMLFIFCVGVEAGPNFFS 83 (558)
T ss_pred HHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhC--CCC-------CC------hHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 333444444432 2446677778999999999953 321 11 12357999999999999998865
Q ss_pred -HHhchhhHHHHHHHHHHHHHHhhhcceeeec-CChhHHHHHHH-HHhhccHHHHHHHHh
Q 047826 121 -VAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GGGPTGLFITP-LYYMTAYPVIFCLLT 177 (746)
Q Consensus 121 -l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~~~~l~ig~-~ls~Ts~~vv~~il~ 177 (746)
+|+.+.+...+++.-.++++++ ++++.+ ++.......|+ +=+.|++|.+....+
T Consensus 84 ~l~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 84 IFFRDGKNYLMLALVMVGSALVI---ALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHhhccccCcHHHHHHHH
Confidence 5666666666676666667666 555555 55333333443 336788888776654
No 95
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=89.43 E-value=3.4 Score=45.06 Aligned_cols=122 Identities=17% Similarity=0.042 Sum_probs=68.1
Q ss_pred HhhHhHHHhhHHHHHHHHhhccCcccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH-HHHhHHH
Q 047826 288 KFDTMISGFFLPIFVTTSAMRLHDLSLHTFNS-LIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALAL-IMNIKGI 365 (746)
Q Consensus 288 kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~-~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~-~m~~kG~ 365 (746)
+++....+.|+-+||+.+|+..++..+.+..- ..+.......++..--+++ ...+++.+.++--++..|- .|..-=.
T Consensus 62 ~fd~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~ig-i~la~~lgidpl~gllagsIsl~GGHG 140 (404)
T COG0786 62 NFDTSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIG-IGLAKLLGLDPLIGLLAGSISLVGGHG 140 (404)
T ss_pred eCCcccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHH-HHHHHHcCccHHHHHHhcceeecCCCc
Confidence 45555678899999999999999988765311 0111222222222233444 4445666776654444422 1211112
Q ss_pred HHHHHHHhhhcCCCCChhh--HHHHHHHHHHHHhhhHHHHHhhcCcc
Q 047826 366 VEMAFYTFASDGRYVSPNM--FRFMLGVVIVTGSVVPILVRKLYDPS 410 (746)
Q Consensus 366 v~l~~~~~~~~~~~i~~~~--~~~lv~~~lltt~i~~~l~~~~~~p~ 410 (746)
.+.+.+....+.|.-+... ...-.+..+.-.++++|+.+|+.|+.
T Consensus 141 taAA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 141 TAAAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 3455666667776554322 23333344555667889999998544
No 96
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=89.38 E-value=35 Score=36.87 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=65.0
Q ss_pred HHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCC
Q 047826 300 IFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRY 379 (746)
Q Consensus 300 iFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~ 379 (746)
+.-..+|.+++...+.....++...++..++.+..-.+.+++..+++++++.+++. .+.|-|.-|+.+.....+.+
T Consensus 212 ~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d- 287 (318)
T PF05145_consen 212 LIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGAD- 287 (318)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCC-
Confidence 34467899999777654333234455556666677888888999999999988764 56899999988777665443
Q ss_pred CChhhHHHHHHHHHH-HHhhhHHHHHhhcC
Q 047826 380 VSPNMFRFMLGVVIV-TGSVVPILVRKLYD 408 (746)
Q Consensus 380 i~~~~~~~lv~~~ll-tt~i~~~l~~~~~~ 408 (746)
...-...-+.=++ ..++.|++.|++.|
T Consensus 288 --~~~V~~~q~~Rl~~v~~~~p~~~r~~~r 315 (318)
T PF05145_consen 288 --VAFVAAHQVVRLLFVLLLAPFIARWLRR 315 (318)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222122122 22346777777764
No 97
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=89.13 E-value=0.81 Score=53.39 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=62.3
Q ss_pred HHHHHHHHHhh-----hCCChHHHHHHHHHhcCcccccc-ccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHH
Q 047826 48 ISQAFHSVLKR-----FGIPIFISQIFAGLLLSRPVLQV-IKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMV 121 (746)
Q Consensus 48 ~a~~~~~l~~r-----l~~P~iv~~Il~GiilGP~~Lg~-~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l 121 (746)
++..+++++-| +++-.+.|-+++|+++|-. |. ++ +.+.++|+++|+|.+|++.-+..+
T Consensus 17 l~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~--g~~i~--------------~~v~~~gl~lFvy~vG~~~Gp~Ff 80 (562)
T TIGR03802 17 LSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQL--GIQID--------------PGVKAVFFALFIFAIGYEVGPQFF 80 (562)
T ss_pred HHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhc--CCCCC--------------hHHHHHHHHHHHHHhhhccCHHHH
Confidence 33344454444 5566788999999999954 32 11 125679999999999999999876
Q ss_pred Hhchh---hHHHHHHHHHHHHHHhhhcceeeec-CChhHHHHHHHHH-hhccHHHHHHH
Q 047826 122 AKVGR---KAWYIGILSVIAPLVALIPGSMVPS-GGGPTGLFITPLY-YMTAYPVIFCL 175 (746)
Q Consensus 122 ~~~~~---~~~~i~~~~~~~p~~l~~~~~~~~~-~g~~~~l~ig~~l-s~Ts~~vv~~i 175 (746)
+.-.| +-...++.-++..+++ .+++.+ +|-......|+.- +.|++|.+...
T Consensus 81 ~~l~~~g~~~~~~a~~~~~~~~~~---~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA 136 (562)
T TIGR03802 81 ASLKKDGLREIILALVFAVSGLIT---VYALAKIFGLDKGTAAGLAAGGLTQSAVIGTA 136 (562)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHHhchhhccHHHHHH
Confidence 54444 4333333333333333 444444 4522222333222 45666665543
No 98
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=89.07 E-value=6.8 Score=42.52 Aligned_cols=142 Identities=13% Similarity=0.008 Sum_probs=85.7
Q ss_pred ccchhhHHHHHHHHhhcCCCC--chhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHH
Q 047826 259 TGFEFTVLGLYILGLAVPHGP--PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKF 336 (746)
Q Consensus 259 ~~G~~~~lgafiaGl~i~~~~--~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~ 336 (746)
.+|+++.+=|.+.|+++.+.. +..+....-+ .+....++-+=-+..|.++++.++.+. ++ . .+++.++.+..-+
T Consensus 28 ~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi-~f~~k~lLr~gIVLlG~~l~~~~i~~~-G~-~-~l~~~~~~v~~~~ 103 (335)
T TIGR00698 28 DPALSALFLAILLGMVAGNTIYPQRDEEKKRGV-LFAKPFLLRIGITLYGFRLTFPYIADV-GP-N-EIVADTLILTSTF 103 (335)
T ss_pred cCCCcHHHHHHHHHHHHhccccccchhhccchH-HHHHHHHHHHHHHHHCccccHHHHHHh-hH-H-HHHHHHHHHHHHH
Confidence 358889999999999998842 1222222222 234556677777899999999988644 43 2 2333333333334
Q ss_pred H-HHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhH---HHHHHHHHHHHhhhHHHHHhh
Q 047826 337 G-ACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMF---RFMLGVVIVTGSVVPILVRKL 406 (746)
Q Consensus 337 ~-~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~---~~lv~~~lltt~i~~~l~~~~ 406 (746)
+ +.++..|.+|++++.+..++...+.=|.-+++...-..+.+ +++.- ..+++...+..++-|++.+++
T Consensus 104 ~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 104 FLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555589999999999999998888877776555443332 22222 222233333444556665544
No 99
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=87.74 E-value=8.4 Score=42.88 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHhh--hCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccC
Q 047826 40 FLIATMLIISQAFHSVLKR--FGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMD 117 (746)
Q Consensus 40 ~~i~~il~~a~~~~~l~~r--l~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d 117 (746)
..+.+.+.+++.+...++. +.+|..++-+++|+++... +..... .+ . .++.++.++++++-+++-.+=..++
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni-~~~~~~-~~--~--~~~~i~~I~~~sLdlfl~~AlmsL~ 295 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNP-LSFKKF-PW--V--AERAVSVIGNVSLSLFLAIALMSLQ 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-HHHhCc-cc--c--chHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455555667777777765 7799999999999999864 222211 00 1 3558999999999999988888999
Q ss_pred hHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec--CC--h----hHHHHHHHHHhhccHHH--HHHHHhhccccCCchh
Q 047826 118 ISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS--GG--G----PTGLFITPLYYMTAYPV--IFCLLTHLKILNSELG 187 (746)
Q Consensus 118 ~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~--~g--~----~~~l~ig~~ls~Ts~~v--v~~il~el~l~~s~~g 187 (746)
+..+....-..+.+.+.+++...+. ...+.+ +| . ..+-.+|..+.+|+.++ .-.+-+++|..+...=
T Consensus 296 L~~l~~~a~Plliil~~q~i~~~l~---~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ 372 (398)
T TIGR00210 296 LWELADLAGPIALILLVQVMFMALY---AIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFI 372 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCccee
Confidence 9999999988888888888887766 444444 45 2 22345556665554433 3334555665444443
Q ss_pred HHHHHHHhHHhHHHHHHHHH
Q 047826 188 RLAQSSAIVADFLSYATILF 207 (746)
Q Consensus 188 ~l~ls~a~i~D~~~~~ll~i 207 (746)
-+=+-.+.+-|+...+++..
T Consensus 373 ivPlvgaf~id~~n~~~i~~ 392 (398)
T TIGR00210 373 VVPLVGAFFIDIINALVIKQ 392 (398)
T ss_pred hhhhHHHHHHHHhhHHHHHH
Confidence 34445577777776665543
No 100
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=86.62 E-value=3.1 Score=39.79 Aligned_cols=111 Identities=15% Similarity=0.066 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHH---Hhch-hhHHHHHHHHH
Q 047826 61 IPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMV---AKVG-RKAWYIGILSV 136 (746)
Q Consensus 61 ~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l---~~~~-~~~~~i~~~~~ 136 (746)
+-...|-+++|+++|-. +...+..-. . .......+.++|+.+|++.+|++--++.+ |+.+ .....++.+-.
T Consensus 21 LG~~~G~L~vgL~~G~~--~~~~p~~~~-~--p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~ 95 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHF--GATGPLTWY-I--PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALIT 95 (154)
T ss_pred ecccHHHHHHHHHHHhc--cccCCccee-c--ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 33367889999999853 432111000 1 24567778999999999999999887654 4433 12233334444
Q ss_pred HHHHHhhhcceeeec--CChhHHHHHHHH-HhhccHHHHHHHHhhc
Q 047826 137 IAPLVALIPGSMVPS--GGGPTGLFITPL-YYMTAYPVIFCLLTHL 179 (746)
Q Consensus 137 ~~p~~l~~~~~~~~~--~g~~~~l~ig~~-ls~Ts~~vv~~il~el 179 (746)
++|.++ +..+.. ++.......|.. =+.|++|.+.-..+..
T Consensus 96 ~~~~~~---~~~~~~~~~~~~~~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 96 VVPTLL---VAVALIKLLRINYALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHH---HHHHHHHHhCCCHHHHHHHHhccccChHHHHHHHHHh
Confidence 444444 333332 453334455544 4689999987766544
No 101
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=86.27 E-value=16 Score=34.96 Aligned_cols=106 Identities=15% Similarity=-0.005 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047826 263 FTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALL 342 (746)
Q Consensus 263 ~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~ 342 (746)
..++|+.+++.++.-.....-++-+.+. .+-.-+.-..+|.+++...+.+...+....++..+..++.-++.+++.
T Consensus 22 ~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l 97 (156)
T TIGR03082 22 AWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLL 97 (156)
T ss_pred HHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888877766543211111111222 222223456889999987766543332445555566667778888889
Q ss_pred HHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047826 343 LLYWKMHRNDAMALALIMNIKGIVEMAFYTFAS 375 (746)
Q Consensus 343 ~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~ 375 (746)
.+.+++++.+++. ...|-|.-++.....-+
T Consensus 98 ~~~~~~~~~ta~L---a~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 98 ARLTGVDPLTAFL---ATSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHCCCHHHHHH---HhCCchHHHHHHHHHHh
Confidence 9999999988863 45788888887766433
No 102
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=84.83 E-value=8.4 Score=38.30 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCccc---ccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047826 266 LGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLS---LHTFNSLIWHNIALAGLAALVKFGACALL 342 (746)
Q Consensus 266 lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~---l~~~~~~~~~~~~~~~~~~~~K~~~~~~~ 342 (746)
++++++|+++....+...+..++..+ ..+.+=+|++-+.+.-|-.. +.+. .| ..+++-+..+++-++++++.
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~--~~L~lLLF~VGi~lG~~~~~l~~l~~~-g~--~~Llipl~tIlGSllgg~l~ 76 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKIST--YALYLLLFLVGIDLGSNREILRQLRSL-GK--RALLIPLATILGSLLGGLLA 76 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHh-hH--HHHHHHHHHHHHHHHHHHHH
Confidence 34566666665432211111233333 23334344444444444222 2212 33 35667777788999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhHHHHHHHHHH
Q 047826 343 LLYWKMHRNDAMALALIMNIKGIVEMAFYT 372 (746)
Q Consensus 343 ~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~ 372 (746)
+++.+++++|++.++.+++=-..-+..+..
T Consensus 77 ~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 77 SLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 999999999999999887766655555554
No 103
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=83.16 E-value=5.8 Score=39.08 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=33.6
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
+|++.+.||.|.--++.++.+.++..+.+++++++...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g 38 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHG 38 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 58999999999999999999998888888999998643
No 104
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=82.38 E-value=4.9 Score=47.76 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=73.4
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCC---CeEEEEEEecChh
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSE---YIRYVKHVVKDGA 678 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~---~v~y~e~~v~~g~ 678 (746)
..+|++...+++....-++.|.|+|+..+++.|++++.+++.....+.+++.-++.++--+.=. ...|.+ .+ ..
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~-dv--~~ 324 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG-DV--AK 324 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC-cH--HH
Confidence 4689999999999999999999999999999999999988765443333332222222111101 223322 12 33
Q ss_pred HHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcC
Q 047826 679 ETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASK 729 (746)
Q Consensus 679 ~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~ 729 (746)
++.+..+.. +.--|++|+++.. .|-+.-. |.+.|-|+..
T Consensus 325 ~i~~ya~~~--~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~ 363 (890)
T COG2205 325 AIARYAREH--NATKIVIGRSRRS---------RWRRLFK-GSLADRLARE 363 (890)
T ss_pred HHHHHHHHc--CCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc
Confidence 466666665 7889999999763 3532211 6777777665
No 105
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=82.10 E-value=2.8 Score=45.07 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=72.3
Q ss_pred HhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHH
Q 047826 291 TMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIAL-AGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMA 369 (746)
Q Consensus 291 ~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~-~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~ 369 (746)
.+.++++=|+-|..+|.-+|++-+...+ + ..++ -..+-++-+ .+++.+...|++.+|+-.+|.+=..-|-.++.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP-~---~~ll~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf 175 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARP-W---ASITVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLF 175 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhCh-H---HHHHHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHH
Confidence 3457889999999999999998875442 2 2222 233444443 34556667799999999999877777888887
Q ss_pred HHHhhhcC--CCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcccc
Q 047826 370 FYTFASDG--RYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRK 412 (746)
Q Consensus 370 ~~~~~~~~--~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~ 412 (746)
+.+..... |-|.-..|+-| + +.=++.||+.|.+--+++|
T Consensus 176 ~s~kLAp~Llg~IaVAAYsYM---a-LVPiiqPpimklLttkkER 216 (399)
T TIGR03136 176 ASLILAKDLFVPISIIAYLYL---S-LTYAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HHHhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhhcCHHHH
Confidence 77643211 12222223322 2 2345689999988754444
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=82.06 E-value=2.4 Score=47.26 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcccChHH---HHhchhhHHHHHHHHHHHHHHhhhcceeeec-CChhHHHHHHH-HHhhccHHHHHH--
Q 047826 102 NIGIAFFIFQSGVKMDISM---VAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GGGPTGLFITP-LYYMTAYPVIFC-- 174 (746)
Q Consensus 102 ~lgl~~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~~~~l~ig~-~ls~Ts~~vv~~-- 174 (746)
++|+++|.+.+|+|--+.. +|+.+++-..++++-++....+ .+++.. ++....+..|. .-+.||+|.+..
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~~~~~---a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~ 138 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIAALLL---AWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQ 138 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHhhcCCCHHHhhhhhcccccCCchhHHHH
Confidence 8999999999999998754 7888888777666543333222 222222 34233333332 225677666554
Q ss_pred -HHhhccc
Q 047826 175 -LLTHLKI 181 (746)
Q Consensus 175 -il~el~l 181 (746)
+++|++.
T Consensus 139 ~~L~~lg~ 146 (544)
T COG2985 139 DILRELGA 146 (544)
T ss_pred HHHHhhcc
Confidence 5666654
No 107
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=82.01 E-value=3.4 Score=43.98 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=71.9
Q ss_pred hHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHH
Q 047826 292 MISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFY 371 (746)
Q Consensus 292 ~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~ 371 (746)
+.++++=|+-|..+|..+|++-+... .| ..++-..+-++-+ .+++.+...|++.+|+-.+|.+=..-|-.++.+.
T Consensus 66 i~~~l~P~LIF~GIGAmtDFgpllan-P~---~~llGaaAQ~Gif-~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s 140 (360)
T PF03977_consen 66 ISNGLFPPLIFMGIGAMTDFGPLLAN-PK---TLLLGAAAQFGIF-ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVS 140 (360)
T ss_pred hhcchhhHHHHHHHhHHHhhHHHHhC-HH---HHHHHHHHHHhHH-HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHH
Confidence 34688889999999999999887544 22 2333333334433 4566677779999999999987777788887776
Q ss_pred HhhhcCCCCChhhHHHHHHHH----HHHHhhhHHHHHhhcCcccc
Q 047826 372 TFASDGRYVSPNMFRFMLGVV----IVTGSVVPILVRKLYDPSRK 412 (746)
Q Consensus 372 ~~~~~~~~i~~~~~~~lv~~~----lltt~i~~~l~~~~~~p~~~ 412 (746)
+.. .++.+..+.+++ -+.=++.||+.|.+-.+++|
T Consensus 141 ~~L------Ap~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR 179 (360)
T PF03977_consen 141 SKL------APHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKER 179 (360)
T ss_pred Hhh------hHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHH
Confidence 643 233333222221 23345689999988754444
No 108
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=81.72 E-value=16 Score=39.46 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=77.8
Q ss_pred hCCChHHHHHHHHHhcCccccccccccccccCcc-cHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHHH
Q 047826 59 FGIPIFISQIFAGLLLSRPVLQVIKVADKIITPE-HVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVI 137 (746)
Q Consensus 59 l~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~-~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~ 137 (746)
++.|.+++.++ |+++... |+- .|. -.+.++.+++...-+-||..|+.++.+.+++..|........-.+
T Consensus 180 ~~nP~iia~i~-Gl~~~~~--~i~-------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPLL-SVILSLV--GFK-------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHHH-HHHHHHH--hhc-------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 57888887754 5766643 321 243 678899999999999999999999988887776766655555543
Q ss_pred -HHHHhhhcceeeec-CC-hhHHHHHHHHHhhccHHHHHHHHhh-ccccCCchhHHHHHHHhHHhHHHHHHHH
Q 047826 138 -APLVALIPGSMVPS-GG-GPTGLFITPLYYMTAYPVIFCLLTH-LKILNSELGRLAQSSAIVADFLSYATIL 206 (746)
Q Consensus 138 -~p~~l~~~~~~~~~-~g-~~~~l~ig~~ls~Ts~~vv~~il~e-l~l~~s~~g~l~ls~a~i~D~~~~~ll~ 206 (746)
.|.+. +.+.. ++ +....-.....+.+.+++...++.+ +|. + .+.+-+...++-+++++.+.
T Consensus 250 l~P~i~----~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~-~---~~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 250 VQPAVM----AGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEV-D---VELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHH----HHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCC-C---HHHHHHHHHHHHHHHHHHHH
Confidence 45544 22222 34 2333444555555555555555544 332 2 24444444444444444443
No 109
>PRK04972 putative transporter; Provisional
Probab=81.14 E-value=5.4 Score=46.58 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhh-----hCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccC
Q 047826 43 ATMLIISQAFHSVLKR-----FGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMD 117 (746)
Q Consensus 43 ~~il~~a~~~~~l~~r-----l~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d 117 (746)
++-++++.+++.+-=+ +++-.--|.+++|+++|- ++...+.... . .......+.++|+.+|+..+|+.--
T Consensus 387 ~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~-~--p~~a~~~l~~~GL~lFla~vGl~aG 461 (558)
T PRK04972 387 CAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY-I--PQGALNMVKEFGLMVFMAGVGLSAG 461 (558)
T ss_pred HHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee-e--CHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 3344444444443333 344456689999999985 3433211111 1 3567788999999999999999877
Q ss_pred hHH---HHhchhhHHHHHHHHHHHHHHhhhcceeeec--CChhHHHHHH-HHHhhccHHHHHHHHhh
Q 047826 118 ISM---VAKVGRKAWYIGILSVIAPLVALIPGSMVPS--GGGPTGLFIT-PLYYMTAYPVIFCLLTH 178 (746)
Q Consensus 118 ~~~---l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~--~g~~~~l~ig-~~ls~Ts~~vv~~il~e 178 (746)
.+. +++.+.+.+.++.+-.++|.++ ++.+++ ++......+| ++-+.|++|.+.-..+.
T Consensus 462 ~~f~~~~~~~g~~~~~~g~~~t~~~~~~---~~~~~~~~~k~~~~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 462 SGINNGLGAVGGQMLIAGLIVSLVPVVI---CFLFGAYVLRMNRALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCHHHHHHHHhCCCCCcHHHHHHHhh
Confidence 654 5666777777777777888877 777764 5533344555 44578888887765543
No 110
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=79.84 E-value=15 Score=42.76 Aligned_cols=102 Identities=17% Similarity=0.072 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHhhcCCCCchh-hHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHH-HHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPLG-SALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAAL-VKFGA 338 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~-~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~-~K~~~ 338 (746)
++++.++-.++|+++...+... -.+.. .....+++|+.....|+++|...+.+. | .....+.+...+ .-.+.
T Consensus 21 ~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~--~-~~i~~la~~~vlit~~~v 94 (525)
T TIGR00831 21 RLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELREN--F-RPIALIAFLLVVVTTVVV 94 (525)
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHHHH--H-HHHHHHHHHHHHHHHHHH
Confidence 4455566666666665321110 00111 122357888888899999999987654 2 122333333333 23333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhHHHHHH
Q 047826 339 CALLLLYWKMHRNDAMALALIMNIKGIVEM 368 (746)
Q Consensus 339 ~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l 368 (746)
++...+..++||..++.+|..+++...+..
T Consensus 95 ~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 95 GFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 444444678999999999999988876654
No 111
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=79.82 E-value=41 Score=40.63 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=48.1
Q ss_pred HHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChHHHHHHHHHHHhHHHH
Q 047826 293 ISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLY--WKMHRNDAMALALIMNIKGIV 366 (746)
Q Consensus 293 ~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~--~~~~~~~~~~lg~~m~~kG~v 366 (746)
+..+.+++-.+..|++++...+... |.. +..+.+.++..-++++.+.+++ .+++|..++++|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~--wrs-V~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKH--WVS-VTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHh--HHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 3566777777789999999887643 422 3333333444444444445443 499999999999999987754
No 112
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=77.71 E-value=12 Score=36.68 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=32.5
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
+|++.+.||+|.--.+.+..++.+..+.+++++++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 58899999999999999999999999999999999754
No 113
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=76.78 E-value=19 Score=34.54 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhhCCC--hHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHH
Q 047826 45 MLIISQAFHSVLKRFGIP--IFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVA 122 (746)
Q Consensus 45 il~~a~~~~~l~~rl~~P--~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~ 122 (746)
.++++.+.+.+++++|+| ..+|-++++.++.- .+..+ .-+| . .+.+++.+++--.+|.+++.+.++
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~----~~~P---~---~~~~~~qviiG~~iG~~f~~~~l~ 70 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE----ITLP---P---WLLALAQVVIGILIGSRFTREVLA 70 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc----CCCC---H---HHHHHHHHHHHHHHHccCCHHHHH
Confidence 456777788999999999 55666666655542 12111 1112 2 345566677778999999999887
Q ss_pred hchhhH
Q 047826 123 KVGRKA 128 (746)
Q Consensus 123 ~~~~~~ 128 (746)
+..+-.
T Consensus 71 ~~~~~~ 76 (156)
T TIGR03082 71 ELKRLW 76 (156)
T ss_pred HHHHHH
Confidence 766543
No 114
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=76.01 E-value=13 Score=36.67 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHH-------HHH
Q 047826 37 RIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIA-------FFI 109 (746)
Q Consensus 37 ~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~-------~ll 109 (746)
.-+..+.++..++..+..-+-|=|++.----|+.|+++.... |.... .+. ....+..++.+|+. |-.
T Consensus 16 ~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg-G~k----GlaDi~lfsGiglmGGaMlRDfAI 89 (254)
T TIGR00808 16 TAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG-GEK----GLADIAIFGGFGLMGGAMLRDLAI 89 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC-Ccc----ccchhhhhcchhhhhhHHHHHHHH
Confidence 334444555555544444444446777777788888876432 22211 000 11223333333322 112
Q ss_pred HHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CC
Q 047826 110 FQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GG 153 (746)
Q Consensus 110 F~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g 153 (746)
---..|.|.+++||.+..-..--+++..+||+. |..+++ ||
T Consensus 90 vaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~---Ga~vA~afG 131 (254)
T TIGR00808 90 VATAFEVDVKEVKKAGKVGMVALLLGCVIPFVI---GAMVAWAFG 131 (254)
T ss_pred HHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHH---HHHHHHHHc
Confidence 255679999999999988766667888999999 887777 55
No 115
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=75.98 E-value=5.2 Score=45.07 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCCcEEEec---CccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCC-----ccccCCCC
Q 047826 527 HDDICTLALDKLASLVILP---FHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRP-----VTHTDSSS 598 (746)
Q Consensus 527 ~~~I~~~a~e~~a~lII~p---~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~-----~~~~~~~~ 598 (746)
+++||.+|+++++|+|++| ||.+......+ +..++.+-+.-+..-||..=++-|.+..|.. ++.+
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L---~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~---- 113 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTL---HRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYE---- 113 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHH---HHHHHHHHHHccCCCceeeEEecccceeccccccceeccc----
Confidence 6899999999999999999 77654322211 2335555566667789999999888764332 2221
Q ss_pred cCCcceEEEEecc--CcCh
Q 047826 599 ADSLSNVAMLFIG--GNDD 615 (746)
Q Consensus 599 ~~~~~~I~~~f~g--g~dd 615 (746)
+...+|.+|.++ |.+|
T Consensus 114 -DpNlNIsIPVFsIHGNHD 131 (646)
T KOG2310|consen 114 -DPNLNISIPVFSIHGNHD 131 (646)
T ss_pred -CCCcceeeeeEEeecCCC
Confidence 113467777665 6544
No 116
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=75.94 E-value=6 Score=33.34 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=28.2
Q ss_pred EEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEee
Q 047826 605 VAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFI 639 (746)
Q Consensus 605 I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~ 639 (746)
|++++.||+|+..++.++.+.+ ..+.+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5789999999999999999987 446677777754
No 117
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.51 E-value=17 Score=40.12 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhc-cCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 265 VLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMR-LHDLSLHTFNSLIWHNIALAGLAALVKFGACALLL 343 (746)
Q Consensus 265 ~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~-~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~ 343 (746)
++...++|....+..-+.++-.+.+..++..+++|.+.+..=.+ .+...+.+ .| .+.+...+..+.-++.+++..
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~ 84 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS--LW--FIPVFAFIIFILGLLLGFLLS 84 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh--hH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554445566677888889999999886544444 33433332 22 233333333444455556667
Q ss_pred HHhCCChHHHH--HHHHHHHhHHHHHHHHHHhhhc
Q 047826 344 LYWKMHRNDAM--ALALIMNIKGIVEMAFYTFASD 376 (746)
Q Consensus 344 ~~~~~~~~~~~--~lg~~m~~kG~v~l~~~~~~~~ 376 (746)
++++.+.++.- ..+...+.-|.+.+-+....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g 119 (385)
T PF03547_consen 85 RLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFG 119 (385)
T ss_pred HhcCCCcccceEEEecccCCcchhhHHHHHHHHhc
Confidence 76666654433 3333345556666666554443
No 118
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=74.25 E-value=9.8 Score=40.72 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=33.3
Q ss_pred ceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCC
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDD 644 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~ 644 (746)
.++++.|.||+|+--.|.++.+.-...+..+.++++.+..++
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F 69 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF 69 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC
Confidence 478999999999999999998865544667788888766543
No 119
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=74.13 E-value=3.4 Score=44.41 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=68.9
Q ss_pred HhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHHhHHH
Q 047826 291 TMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLY-----WKMHRNDAMALALIMNIKGI 365 (746)
Q Consensus 291 ~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~-----~~~~~~~~~~lg~~m~~kG~ 365 (746)
.+.++++=|+.|..+|.-+|+.-+...+. ..++-..+-++-|.....+..+ .+++.+|+-.+|.+=..-|-
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~----~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15475 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPR----TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHH----HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 34568888999999999999988654421 2333333334444333222222 27899999999987777777
Q ss_pred HHHHHHHhhhcC--CCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcccc
Q 047826 366 VEMAFYTFASDG--RYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRK 412 (746)
Q Consensus 366 v~l~~~~~~~~~--~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~ 412 (746)
.++.+.+..... |-|.-..|+-| + +.=++.||+.|.+--+++|
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER 250 (433)
T PRK15475 206 TAIYLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTETER 250 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHh
Confidence 777776643211 22222333333 2 2345689999988754433
No 120
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=73.82 E-value=1.1e+02 Score=31.19 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=74.7
Q ss_pred hHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047826 283 SALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNI 362 (746)
Q Consensus 283 ~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~ 362 (746)
+.+..-+++-+-.+-.|+|= +.+.+.+ .| ..+..-++++.+.-++.+++.+++++.+..- . ..+.|
T Consensus 62 ~~i~~lLgPAtVAlAvPLYk-------q~~~ik~--~w-~~I~~g~~vGs~~ai~s~~llak~~g~~~~~--~--~Sl~P 127 (230)
T COG1346 62 QWINFLLGPATVALAVPLYK-------QRHLIKR--HW-KPILAGVLVGSVVAIISGVLLAKLFGLSPEL--I--LSLLP 127 (230)
T ss_pred HHHHHHHHHHHHHHhhHHHH-------HHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--H--HHhcc
Confidence 34444444444455555542 2233433 35 3344445555666777788888998887642 2 35789
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhc
Q 047826 363 KGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLY 407 (746)
Q Consensus 363 kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~ 407 (746)
|....-+...+..+.|-+.+-.-..++++-++..++++++.+++-
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988887777777788888888888888773
No 121
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=73.74 E-value=32 Score=37.17 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 265 VLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLL 344 (746)
Q Consensus 265 ~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~ 344 (746)
++|+.+++.+.....+..-....++. .....+--+.+|.+++.+.+.....|.....+..+...+.-.++.++..|
T Consensus 2 llG~~ia~~~~~~~~~~~~~~p~~~r----~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r 77 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPLRVPRRLR----NAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR 77 (318)
T ss_pred chHHHHHHHHHHHhCCCccCCCHHHH----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666655533222222222222 23344556788999998877654444345566666667778888888899
Q ss_pred HhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHH-HHHHHhhhHHHHHhhcC
Q 047826 345 YWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGV-VIVTGSVVPILVRKLYD 408 (746)
Q Consensus 345 ~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~-~lltt~i~~~l~~~~~~ 408 (746)
..+++..+++. ...|-|..+++... .+.|. |...-..+-.. +++...+.|+++.+..+
T Consensus 78 ~~~~d~~TA~~---~~~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~ 136 (318)
T PF05145_consen 78 ISGLDRATAFF---ASMPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLVVLLVPFIASLLGG 136 (318)
T ss_pred HcCCChhHHHH---HcCCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999888875 45688888887655 45553 22221111111 12223346666766664
No 122
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=73.65 E-value=3.5 Score=44.29 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=68.9
Q ss_pred HhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHHhHHH
Q 047826 291 TMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLY-----WKMHRNDAMALALIMNIKGI 365 (746)
Q Consensus 291 ~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~-----~~~~~~~~~~lg~~m~~kG~ 365 (746)
.+.++++=|+.|..+|.-+|+.-+...+. ..++-..+-++-|.....+..+ .+++.+|+-.+|.+=..-|-
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~----~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15476 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPR----TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHH----HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 34568888999999999999988654421 2333333334444333222222 27899999999987777777
Q ss_pred HHHHHHHhhhcC--CCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcccc
Q 047826 366 VEMAFYTFASDG--RYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRK 412 (746)
Q Consensus 366 v~l~~~~~~~~~--~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~ 412 (746)
.++.+.+..... |-|.-..|+-| + +.=++.||+.|.+--+++|
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER 250 (433)
T PRK15476 206 TAIYLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTEKER 250 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHh
Confidence 777766643211 22222333333 2 2345689999988754433
No 123
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=73.63 E-value=3.5 Score=44.29 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=68.8
Q ss_pred HhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHHhHHH
Q 047826 291 TMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLY-----WKMHRNDAMALALIMNIKGI 365 (746)
Q Consensus 291 ~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~-----~~~~~~~~~~lg~~m~~kG~ 365 (746)
.+.++++=|+.|..+|.-+|+.-+...+. ..++-..+-++-|.....+..+ .+++.+|+-.+|.+=..-|-
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~----~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15477 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPR----TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHH----HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 34568888999999999999988654421 2333333334444333222222 27899999999987777777
Q ss_pred HHHHHHHhhhcC--CCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcccc
Q 047826 366 VEMAFYTFASDG--RYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRK 412 (746)
Q Consensus 366 v~l~~~~~~~~~--~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~ 412 (746)
.++.+.+..... |-|.-..|+-| + +.=++.||+.|.+--+++|
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER 250 (433)
T PRK15477 206 TAIYLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTEKER 250 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHh
Confidence 777766643211 22222333333 2 2345689999988754433
No 124
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=72.39 E-value=14 Score=36.02 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=33.3
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
+|++.+.||.|+--++.++.+...+.+.+++++++.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 58999999999999999999998877788999998654
No 125
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=71.87 E-value=13 Score=39.67 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=32.2
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCC
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDD 644 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~ 644 (746)
+.++.|.||+|+--.|.++.+.-...+..+.++++-+.-++
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F 61 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF 61 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC
Confidence 45788999999999999998876544677888988765443
No 126
>COG3329 Predicted permease [General function prediction only]
Probab=71.09 E-value=57 Score=34.51 Aligned_cols=123 Identities=16% Similarity=0.089 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHhhcCCCC---chhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHH
Q 047826 262 EFTVLGLYILGLAVPHGP---PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGA 338 (746)
Q Consensus 262 ~~~~lgafiaGl~i~~~~---~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~ 338 (746)
+++.+.-|+.|++++-.+ .+.+.+.+-+.. .+++- .-.--|+.+.-+.+... +..++.-+.+.++.-++.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lsl---yLL~a-IG~kGGveir~snl~a~---v~~~~~~~aL~~li~~ia 88 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALSL---YLLLA-IGFKGGVEIRNSNLTAM---VLPVALGVALGFLIVFIA 88 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHHH---HHHHH-HhcccceeeecCCcchh---HHHHHHHHHHHHHHHHHH
Confidence 466777788888777532 111222221111 11111 11223555554444432 123444455566667777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 047826 339 CALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGV 391 (746)
Q Consensus 339 ~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~ 391 (746)
.++..++.|++..|+...+..-+.-..+.++.+...++.--+..+-|...++.
T Consensus 89 ~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~la 141 (372)
T COG3329 89 YFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLA 141 (372)
T ss_pred HHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 78888888999999999999888888888887777776655666665544333
No 127
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=69.47 E-value=35 Score=33.11 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=32.1
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCC--CeEEEEEEeeec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDN--KVRLTVVHFIAE 641 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~--~v~ltv~~~~~~ 641 (746)
+|++.+.||.|.--.+.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999998887765 788888888754
No 128
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=67.32 E-value=21 Score=38.11 Aligned_cols=67 Identities=24% Similarity=0.381 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHh
Q 047826 64 FISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVA 142 (746)
Q Consensus 64 iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l 142 (746)
.+--|+.|+++|+.. +.+.+.+-| =-.+++.|+.|..|..+|++.+.+.+.+.+.+++..+.+.+.+
T Consensus 169 lilpILiGmilGNld----~~~~~~l~~--------Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLD----PDMRKFLTK--------GGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccc----hhhHHHHhc--------cceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 566677888888631 111111111 1223788999999999999999999999888888777766666
No 129
>PRK03818 putative transporter; Validated
Probab=63.96 E-value=12 Score=43.53 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHH---h-chhhHHHHHHHHHHHH
Q 047826 64 FISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVA---K-VGRKAWYIGILSVIAP 139 (746)
Q Consensus 64 iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~---~-~~~~~~~i~~~~~~~p 139 (746)
.-|-+++|+++|-. +...+.... . .......+.++|+.+|+..+|+.--.+.+. + .+.+...+|.+-.++|
T Consensus 403 ~~G~L~~gl~~g~~--~~~~~~~~~-~--p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGRI--GSIGKLYWF-M--PPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHhc--cCCCCceee-c--CHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 46789999999853 432211111 1 346677889999999999999988776543 3 4566667777777788
Q ss_pred HHhhhcceeeec--CChhHHHHHH-HHHhhccHHHHHHHH
Q 047826 140 LVALIPGSMVPS--GGGPTGLFIT-PLYYMTAYPVIFCLL 176 (746)
Q Consensus 140 ~~l~~~~~~~~~--~g~~~~l~ig-~~ls~Ts~~vv~~il 176 (746)
.++ ++.++. ++......+| .+-+.|++|.+.-..
T Consensus 478 ~~~---~~~~~~~~~~~~~~~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 478 LLI---VGILARMLAKMNYLTLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHH---HHHHHHHHHcCCHHHHHHHHhccCCCcHHHHHHh
Confidence 877 776654 5533445555 445788988876653
No 130
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=63.22 E-value=38 Score=34.51 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=59.6
Q ss_pred EEEEEEEcCCC-ChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCcc
Q 047826 514 INAFTAISPPD-LMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPVT 592 (746)
Q Consensus 514 v~~~~~vs~~~-~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~~ 592 (746)
..+++.++|.+ ...++|.+.+.+-.+|.|++|- .+|. +......+.+++-++.+-||-++.....+ +
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGG-----S~gv---t~~~~~~~v~~ik~~~~lPvilfP~~~~~---i- 83 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGG-----SDGV---TEENVDNVVEAIKERTDLPVILFPGSPSG---I- 83 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECC-----cccc---cHHHHHHHHHHHHhhcCCCEEEecCChhc---c-
Confidence 46788999999 9999999999999999999992 2232 22236777788888999998776544322 1
Q ss_pred ccCCCCcCCcceEEEEeccCcCh
Q 047826 593 HTDSSSADSLSNVAMLFIGGNDD 615 (746)
Q Consensus 593 ~~~~~~~~~~~~I~~~f~gg~dd 615 (746)
+.....+.++..-..+|
T Consensus 84 ------s~~aDavff~svLNS~n 100 (240)
T COG1646 84 ------SPYADAVFFPSVLNSDN 100 (240)
T ss_pred ------CccCCeEEEEEEecCCC
Confidence 12245777777665555
No 131
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=62.35 E-value=29 Score=33.23 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=57.1
Q ss_pred chhhHHHHHHHHhhcCCCC---chhhHHHHHhhHhHHHhhHHHHHHHHhhccCccc---ccchhhhHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGP---PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLS---LHTFNSLIWHNIALAGLAALV 334 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~---~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~---l~~~~~~~~~~~~~~~~~~~~ 334 (746)
.+...-|++++|+++.+.. |..-.+......+.+++.+-+|...+|++.-.+. +.+...| ....+..++.++.
T Consensus 20 ~LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~-~~~~~g~~v~~~~ 98 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGL-LRINGGALITVVP 98 (154)
T ss_pred EecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH-HHHHHHHHHHHHH
Confidence 3444557888888877643 2222333445556678888899999999997543 3333212 2223333444445
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHH
Q 047826 335 KFGACALLLLYWKMHRNDAMALAL 358 (746)
Q Consensus 335 K~~~~~~~~~~~~~~~~~~~~lg~ 358 (746)
-.+..++..+++|+++- ...|.
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~~G~ 120 (154)
T TIGR01625 99 TLLVAVALIKLLRINYA--LTAGM 120 (154)
T ss_pred HHHHHHHHHHHhCCCHH--HHHHH
Confidence 56667777788899874 34454
No 132
>PRK09903 putative transporter YfdV; Provisional
Probab=62.15 E-value=86 Score=33.67 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=62.1
Q ss_pred hCCChHHHHHHHHHhcCccccccccccccccCcc-cHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHHH
Q 047826 59 FGIPIFISQIFAGLLLSRPVLQVIKVADKIITPE-HVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVI 137 (746)
Q Consensus 59 l~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~-~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~ 137 (746)
++-|.+++.+++ +++.- +|.. .|. -.+.++.+++...-+-||.+|..+....++.. ++.+...+.-.+
T Consensus 171 ~~nP~iia~~~g-l~~~l--~~i~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVLA-TILVL--VGVK-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHHH-HHHHH--cCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 556888887654 55442 3431 244 68889999999999999999998876655433 333333333333
Q ss_pred -HHHHhhhcceeeec-CC-hhHHHHHHHHHhhccHHHHHHHHhh
Q 047826 138 -APLVALIPGSMVPS-GG-GPTGLFITPLYYMTAYPVIFCLLTH 178 (746)
Q Consensus 138 -~p~~l~~~~~~~~~-~g-~~~~l~ig~~ls~Ts~~vv~~il~e 178 (746)
.|++. +.+.+ ++ +....-.....+.+.+++...++.+
T Consensus 240 ~~P~i~----~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~ 279 (314)
T PRK09903 240 LMPLAL----LLVGMACHLNSEHLQMMVLAGALPPAFSGIIIAS 279 (314)
T ss_pred HHHHHH----HHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHH
Confidence 46544 11222 34 3344445556666666666666644
No 133
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=60.73 E-value=2e+02 Score=31.85 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=74.1
Q ss_pred chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACA 340 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~ 340 (746)
-+++.+=+++.|+++.+.+-....-...+.+.+...++|+=....=++.|++.+.+. + .-.++.++++.++-.+|+.
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g--~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRL-G--GRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHh-h--HHHHHHHHHHHHHHHHHHH
Confidence 355666667777766664322111123455566778888877777789999887654 3 2355566667777778887
Q ss_pred HHHHHhCCC-hHHHHHHHHHHH---hHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 047826 341 LLLLYWKMH-RNDAMALALIMN---IKGIVEMAFYTFASDGRYVSPNMFRFMLGV 391 (746)
Q Consensus 341 ~~~~~~~~~-~~~~~~lg~~m~---~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~ 391 (746)
++...++.. -.|...+.-.+. .-|.+-++....+++ .+++.+...+.+
T Consensus 101 va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~---~~~~~~~a~~aa 152 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALG---VSDSLFAAALAA 152 (378)
T ss_pred HHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHC---CCHHHHHHHHHH
Confidence 777776543 234444433332 236677766665554 356666655444
No 134
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=60.29 E-value=2e+02 Score=30.47 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=70.3
Q ss_pred eEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCc
Q 047826 512 ASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPV 591 (746)
Q Consensus 512 v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~ 591 (746)
.-|-.|...+ ..+.+.|++.|++.++..||.-..+.-...+ ...+.....+..+++++||++=-|++..+...
T Consensus 18 yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i 90 (281)
T PRK06806 18 YGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKI 90 (281)
T ss_pred ceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444555544 6788999999999999999987654432211 12366777788999999999988998532211
Q ss_pred cccCCCCcCCcceEEEEecc-CcChHHHHHHHHHh---hhCCCeEE--EEEEe
Q 047826 592 THTDSSSADSLSNVAMLFIG-GNDDREALTFAKRM---VRDNKVRL--TVVHF 638 (746)
Q Consensus 592 ~~~~~~~~~~~~~I~~~f~g-g~ddreAl~~a~rm---a~~~~v~l--tv~~~ 638 (746)
..- -...... +=+.+ ..+++|-++.++++ ++..|+.+ .+.|+
T Consensus 91 ~~A----l~~G~ts-Vm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 91 KEA----LEIGFTS-VMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHH----HHcCCCE-EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 000 0001122 22333 24677777776655 56666655 44554
No 135
>COG2431 Predicted membrane protein [Function unknown]
Probab=60.25 E-value=2.3e+02 Score=29.82 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHH
Q 047826 327 LAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYT 372 (746)
Q Consensus 327 ~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~ 372 (746)
.-++..++-.+|..+++.+.++|+.+++.++..++=-...+..+..
T Consensus 168 l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 168 LAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 3344556788899999999999999999998877666666665555
No 136
>PRK12342 hypothetical protein; Provisional
Probab=60.19 E-value=19 Score=37.51 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=59.2
Q ss_pred EEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC--C-CeEEEEEEecChhHHHHH
Q 047826 607 MLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS--E-YIRYVKHVVKDGAETVKI 683 (746)
Q Consensus 607 ~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~--~-~v~y~e~~v~~g~~~~~~ 683 (746)
+++.=.|.|+-|++.|.|+. ..+.++|++.+=+++. + ++..+++.-.. + .+...+... .|.|+...
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a------~---~~~l~r~alamGaD~avli~d~~~-~g~D~~at 97 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL------Q---NSKVRKDVLSRGPHSLYLVQDAQL-EHALPLDT 97 (254)
T ss_pred CCccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH------h---HHHHHHHHHHcCCCEEEEEecCcc-CCCCHHHH
Confidence 44555789999999999999 4689999999765431 0 11122332222 2 233332221 23444332
Q ss_pred -------HHhhccCCcEEEEcccCCCC-----CccccccccCCCCCccchhhh
Q 047826 684 -------VHSIVSEFELIIVGRRYNLE-----SPQTSCLKQWSEFPELGILGD 724 (746)
Q Consensus 684 -------i~~~~~~~DLiiVG~~~~~~-----~~~~~gl~~w~e~~eLG~igd 724 (746)
++.. +||||+-|+..... .|+++.+-+| |-+..+-+
T Consensus 98 a~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~---P~vt~v~~ 145 (254)
T PRK12342 98 AKALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQL---PVINAVSK 145 (254)
T ss_pred HHHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCC---CcEeeEEE
Confidence 3433 59999999986433 4555555555 55555544
No 137
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=58.68 E-value=52 Score=34.82 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=33.8
Q ss_pred ceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
++|++.+.||+|.--+|.+.+++.++ +++.+++|...
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 68999999999999999999999988 99999998754
No 138
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=57.62 E-value=7.2 Score=41.40 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=68.6
Q ss_pred HhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHhHH
Q 047826 291 TMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKM------HRNDAMALALIMNIKG 364 (746)
Q Consensus 291 ~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~------~~~~~~~lg~~m~~kG 364 (746)
.+.++++=|+-|..+|..+|++-+...+ + ..++-..+-++-+ .+++.+...++ +.+|+-.+|.+=..-|
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP-~---~~llGaaAQ~GiF-~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADG 133 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANP-R---TLLLGAAAQFGIF-ATVFGALTLNFFGIISFSLPQAAAIGIIGGADG 133 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhCh-H---HHHHHHHHHhhHH-HHHHHHHHhCCCcccccChhhceeeeeeccCCC
Confidence 3457889999999999999998865442 1 2333333334433 34555666677 6699999888766777
Q ss_pred HHHHHHHHhhhcC--CCCChhhHHHHHHHHHHHHhhhHHHHHhhcCcccc
Q 047826 365 IVEMAFYTFASDG--RYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRK 412 (746)
Q Consensus 365 ~v~l~~~~~~~~~--~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~ 412 (746)
-.++.+.+..... +-|.-..|+-| -+.=++.||+.|.+-.+++|
T Consensus 134 Pt~If~s~~lap~Llg~IaVAAYsYM----aLvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 134 PTAIYLSGKLAPELLAAIAVAAYSYM----ALVPIIQPPIMKALTSEKER 179 (354)
T ss_pred chhhhhHhhhhhHHHHHHHHHHHHHH----HHHhcccchHHHhhcChHHh
Confidence 7777666533211 11222223322 22345688999988754433
No 139
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=56.41 E-value=22 Score=38.10 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=33.2
Q ss_pred ceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDG 645 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~ 645 (746)
.++++.|.||+|+--.|.++.+.....+..+.++++-+.-++.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~Fp 80 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFR 80 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCH
Confidence 3568899999999999999988865555677888877665543
No 140
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=55.66 E-value=28 Score=36.36 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=59.9
Q ss_pred EEeccCcChHHHHHHHHHhhhCCC-eEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC--C-CeEEEEEEecChhHHHH
Q 047826 607 MLFIGGNDDREALTFAKRMVRDNK-VRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS--E-YIRYVKHVVKDGAETVK 682 (746)
Q Consensus 607 ~~f~gg~ddreAl~~a~rma~~~~-v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~--~-~v~y~e~~v~~g~~~~~ 682 (746)
+++.=.+.|+-|++.|.|+.++.+ .++|++.+=+++.. ++..+++.-.. + .+...+.. -.|.|+..
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------~~~~lr~aLAmGaD~avli~d~~-~~g~D~~~ 99 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------NAKGRKDVLSRGPDELIVVIDDQ-FEQALPQQ 99 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------hHHHHHHHHHcCCCEEEEEecCc-ccCcCHHH
Confidence 345557889999999999999864 89999997654320 11233333222 2 22222221 12333333
Q ss_pred H-------HHhhccCCcEEEEcccCC-CCCcccc-ccccCCCCCccchhhhh
Q 047826 683 I-------VHSIVSEFELIIVGRRYN-LESPQTS-CLKQWSEFPELGILGDL 725 (746)
Q Consensus 683 ~-------i~~~~~~~DLiiVG~~~~-~~~~~~~-gl~~w~e~~eLG~igd~ 725 (746)
. +++. +||||+-|++.- ..+-++- -+.+|-..|-+..+-++
T Consensus 100 tA~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 100 TASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred HHHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 3 3443 699999999863 2222221 22344444777766664
No 141
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=54.43 E-value=70 Score=34.82 Aligned_cols=91 Identities=16% Similarity=0.085 Sum_probs=53.2
Q ss_pred CCCCCccchHHHHHH-HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccc--cccccccccccCcccHHHHHHHHHH
Q 047826 27 DYKWLDYTTPRIMFL-IATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPV--LQVIKVADKIITPEHVQLIGSMGNI 103 (746)
Q Consensus 27 ~~~pl~~~~~~~l~~-i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~--Lg~~~~~~~~lfp~~~~~l~~la~l 103 (746)
++.|-+-+++..... +.+.+.++.+.+.+.+++|+|.- ++++.++++-.+ .+-++ .- -..++ ..+
T Consensus 174 ~~~~~~i~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v~~~~~~~----~~---lP~wl---~~v 241 (352)
T COG3180 174 GSGTPEIWLPPVDWLILLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIVHFGGGIT----IQ---LPAWL---LAV 241 (352)
T ss_pred CCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhhccccee----ee---CCHHH---HHH
Confidence 444333344444444 66677777788899999999863 333444433221 11011 00 12333 356
Q ss_pred HHHHHHHHhhcccChHHHHhchhhHH
Q 047826 104 GIAFFIFQSGVKMDISMVAKVGRKAW 129 (746)
Q Consensus 104 gl~~llF~~Gle~d~~~l~~~~~~~~ 129 (746)
+..++--.+|.++|-..+++..|-..
T Consensus 242 a~~~iG~~IG~~f~~~~l~~~~r~~~ 267 (352)
T COG3180 242 AQALIGALIGSRFDRSILREAKRLLP 267 (352)
T ss_pred HHHHHHHHHcccccHHHHHHhHhhcc
Confidence 67777889999999998877766543
No 142
>COG0679 Predicted permeases [General function prediction only]
Probab=52.12 E-value=2.7e+02 Score=29.84 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 265 VLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLL 344 (746)
Q Consensus 265 ~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~ 344 (746)
++.-...|....+.....++-.+-+.+++..+.+|..++..=.+.+.+... .+ ....+..+..++.=+++..+..+
T Consensus 12 i~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 12 IFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DL-GLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455554443444555557888899999999888777777766541 12 22344444444455555555566
Q ss_pred HhCCChHHHH--HHHHHHHhHHHHHHHHHH
Q 047826 345 YWKMHRNDAM--ALALIMNIKGIVEMAFYT 372 (746)
Q Consensus 345 ~~~~~~~~~~--~lg~~m~~kG~v~l~~~~ 372 (746)
..+.+.++.. ..+...+.-|-+.+-++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~ 117 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVAL 117 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHH
Confidence 6666666553 333334444555443333
No 143
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=51.73 E-value=19 Score=38.49 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=33.8
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCe-EEEEEEe
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKV-RLTVVHF 638 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v-~ltv~~~ 638 (746)
..+|++-|.||+|...-|+++.+.|+..+- +++|+++
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 569999999999999999999999988876 8999886
No 144
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=51.04 E-value=7.1 Score=40.58 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=76.1
Q ss_pred HHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHH
Q 047826 293 ISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYT 372 (746)
Q Consensus 293 ~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~ 372 (746)
.++++=++.|..+|..+|++-+...+- .+++-..+-++-| .+++.+...++..+|+-.+|.+=..-|-.++.+.+
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPk----tllLGaAAQ~GIF-~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~ 156 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPK----TLLLGAAAQFGIF-ATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN 156 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcH----HHHhhhHHHhchH-HHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc
Confidence 467888889999999999988654321 2223333333333 34556677789999999988765565655554443
Q ss_pred hhhcCCCCChhhHHHHHHHH----HHHHhhhHHHHHhhcCcccccccc-cccccccCCCCCcceeEEEe
Q 047826 373 FASDGRYVSPNMFRFMLGVV----IVTGSVVPILVRKLYDPSRKYAGY-QIKKLVDCKPESELQIVSCI 436 (746)
Q Consensus 373 ~~~~~~~i~~~~~~~lv~~~----lltt~i~~~l~~~~~~p~~~~~~~-~~r~i~~~~~~~e~riLv~i 436 (746)
.+.++....+.+++ .+.-++.||+.|.+--+++|..+- +.|++ ....||+.|+
T Consensus 157 ------~LAP~Ll~~iAvAAYSYMALVPiIQPpimkaLTt~~ERkIrM~qlR~V-----sk~EkIlFPi 214 (375)
T COG1883 157 ------KLAPELLGAIAVAAYSYMALVPIIQPPIMKALTTKEERKIRMTQLRTV-----SKREKILFPI 214 (375)
T ss_pred ------ccCHHHHHHHHHHHHHHHHHhhhcccHHHHHhcCHHHHHhhhhccccc-----cchhhhhhhH
Confidence 34444443333322 223456889999887665543322 22332 2345676665
No 145
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=49.67 E-value=1.4e+02 Score=32.86 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhcCCCCch-----hhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHH
Q 047826 264 TVLGLYILGLAVPHGPPL-----GSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGA 338 (746)
Q Consensus 264 ~~lgafiaGl~i~~~~~~-----~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~ 338 (746)
+.+=+.++|+++.-.++. .+.+.+-++.+ .....|+=.+.+|+.+..........+ ......+++.++.-++.
T Consensus 245 P~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~-~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 245 PPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGW-KPSIIAVLVRLIILPLI 322 (385)
T ss_pred cHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhh-HHHHHHHHHHHHHHHHH
Confidence 333345555555443222 24555555554 688899999999998875433222122 22333456666667777
Q ss_pred HHHHHHHhCCChH
Q 047826 339 CALLLLYWKMHRN 351 (746)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (746)
++...+..+++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777776543
No 146
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=49.49 E-value=58 Score=30.71 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=26.7
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
+|++.|.||+|.--.+.++.+...+. -+++++++.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 47889999999988888887765432 45667776554
No 147
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=49.45 E-value=3.1e+02 Score=28.06 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=64.9
Q ss_pred HHHHHHHhhhC----CChHHHHHHHHHhcCcccccc-ccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhc
Q 047826 50 QAFHSVLKRFG----IPIFISQIFAGLLLSRPVLQV-IKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKV 124 (746)
Q Consensus 50 ~~~~~l~~rl~----~P~iv~~Il~GiilGP~~Lg~-~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~ 124 (746)
.+.-++.||++ .|-+++.++...++=. +|. .++|.+ ..++++.+ +|-.-.-|-.-+--+++.+||+
T Consensus 19 ~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i~Y~~Y~~-----g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~ 89 (230)
T COG1346 19 FAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGISYEDYMK-----GGQWINFL--LGPATVALAVPLYKQRHLIKRH 89 (230)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCCCHHHHhc-----ccHHHHHH--HHHHHHHHhhHHHHHHHHHHHH
Confidence 33455667766 4556665555444432 222 122211 45556655 4445555667777788999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhcceeeec-CChhHHHHHHHH-HhhccHHHHHHHHhhcc
Q 047826 125 GRKAWYIGILSVIAPLVALIPGSMVPS-GGGPTGLFITPL-YYMTAYPVIFCLLTHLK 180 (746)
Q Consensus 125 ~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~~~~l~ig~~-ls~Ts~~vv~~il~el~ 180 (746)
++........|..+.+.. ++.++. +|....+....+ =|+|. |+...+=+++|
T Consensus 90 w~~I~~g~~vGs~~ai~s---~~llak~~g~~~~~~~Sl~PkSvTT-piAm~vs~~iG 143 (230)
T COG1346 90 WKPILAGVLVGSVVAIIS---GVLLAKLFGLSPELILSLLPKSVTT-PIAMEVSESIG 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHhccccccc-HHHHHHHHhcC
Confidence 998877666666666666 566555 552111221111 13333 66666666655
No 148
>COG3371 Predicted membrane protein [Function unknown]
Probab=48.05 E-value=83 Score=30.78 Aligned_cols=74 Identities=18% Similarity=0.029 Sum_probs=46.8
Q ss_pred hhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHHH
Q 047826 58 RFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVI 137 (746)
Q Consensus 58 rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~ 137 (746)
|.+-+.-.-++++|+.+.- .|..| + ...-..+..+.+.+++|.+.+-+.....+++.+....+.+.-.+
T Consensus 73 k~~~~g~~ll~is~lfLaL--VGVFp--------E-gt~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~~~i~i~~ 141 (181)
T COG3371 73 KIENYGGALLIISGLFLAL--VGVFP--------E-GTPPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLIAISIGI 141 (181)
T ss_pred HhhhcchHHHHHHHHHHHh--eeeCC--------C-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5666666677888887763 35433 2 22344556677788889888888888877766555444444444
Q ss_pred HHHHh
Q 047826 138 APLVA 142 (746)
Q Consensus 138 ~p~~l 142 (746)
.|..+
T Consensus 142 ~~l~l 146 (181)
T COG3371 142 FSLAL 146 (181)
T ss_pred HHHHH
Confidence 44444
No 149
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=47.25 E-value=88 Score=35.40 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=41.5
Q ss_pred cceEEEEeccCcChHHHHHHHHHhh-hCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMV-RDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS 664 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma-~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 664 (746)
..+|++.+.||+|.--.+.+..++. ..++.+++++|++..-..+ .+.+.++++++..+
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~-----s~~~~~~~~~~~~~ 73 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPN-----ADSWVKHCEQVCQQ 73 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcc-----hHHHHHHHHHHHHH
Confidence 4689999999999998888888876 4568899999997543211 12244566666543
No 150
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=47.22 E-value=1.2e+02 Score=33.04 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=56.0
Q ss_pred HHHHhhh-CCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcc-cChHHHHhch-hhHH
Q 047826 53 HSVLKRF-GIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVK-MDISMVAKVG-RKAW 129 (746)
Q Consensus 53 ~~l~~rl-~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle-~d~~~l~~~~-~~~~ 129 (746)
+.+++.+ ++|..+..|+.|+++-- +|.+|+..+.- ....-+++..--...+|+-+|+. +|++++.+.. ...+
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~---a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~v 269 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEG---AKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFV 269 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHh
Confidence 3344443 78999999999999873 57765210000 11112223222233445557885 8999988877 4444
Q ss_pred HHHHHHHHHHHHhhhcceeeec-CC--h-hHHHHHHHHHh
Q 047826 130 YIGILSVIAPLVALIPGSMVPS-GG--G-PTGLFITPLYY 165 (746)
Q Consensus 130 ~i~~~~~~~p~~l~~~~~~~~~-~g--~-~~~l~ig~~ls 165 (746)
.+.+.+++.-.+. ++.+++ +| + ..++.-|.+.+
T Consensus 270 viiv~~Vlg~ii~---s~lvGKllG~YPiE~aItagLC~~ 306 (347)
T TIGR00783 270 VICLSVVVAMILG---GAFLGKLMGMYPVESAITAGLCNS 306 (347)
T ss_pred hhHHHHHHHHHHH---HHHHHHHhCCChHHHHHHHhhhcc
Confidence 4444444333333 444455 55 3 44444454544
No 151
>COG2985 Predicted permease [General function prediction only]
Probab=47.15 E-value=37 Score=38.20 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccChHH---HHhchhhHHHHHHHHHH
Q 047826 61 IPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMDISM---VAKVGRKAWYIGILSVI 137 (746)
Q Consensus 61 ~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~~ 137 (746)
+-..-|.+++|++|| .+|.+.+..- ..| ......+.++|+.+||=-+|++---+. +-..+-.....|.+-.+
T Consensus 395 LG~aGGpLivaLiLG--~ig~iGpl~w-~mP--~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~ 469 (544)
T COG2985 395 LGNAGGPLIVALILG--FIGAIGPLTW-FMP--PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTL 469 (544)
T ss_pred ecccccHHHHHHHHH--HhcccCceEE-EcC--hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHH
Confidence 335567888888888 3565543211 122 466778899999987666666543222 33344444444555555
Q ss_pred HHHHhhhcceeeec--CChhHHHHHHHHH-hhccHHHHHH
Q 047826 138 APLVALIPGSMVPS--GGGPTGLFITPLY-YMTAYPVIFC 174 (746)
Q Consensus 138 ~p~~l~~~~~~~~~--~g~~~~l~ig~~l-s~Ts~~vv~~ 174 (746)
+|.+. ++.++. +...+..+.|.+. +.|++|.+.-
T Consensus 470 vp~i~---~~llg~~v~kmn~~~l~G~laGs~T~ppaLa~ 506 (544)
T COG2985 470 VPVII---VFLLGRYVLKMNWLLLCGALAGSMTDPPALAF 506 (544)
T ss_pred HHHHH---HHHHHHHHHhccHHHHhhHHhcCCCChHHHHH
Confidence 66666 555554 2235666666555 6788887654
No 152
>COG0679 Predicted permeases [General function prediction only]
Probab=46.57 E-value=4e+02 Score=28.55 Aligned_cols=137 Identities=12% Similarity=0.013 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHhhcCCCC-chhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 047826 262 EFTVLGLYILGLAVPHGP-PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACA 340 (746)
Q Consensus 262 ~~~~lgafiaGl~i~~~~-~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~ 340 (746)
.+|.+=|+++|+++...+ +..+.+.+-++.+ .+...|+=.+..|+.++....... .+ .........-.+..++..+
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~-~~-~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGS-KP-PIILIALSLKLLLAPLVAL 243 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccc-cc-hhHHHHHHHHHHHHHHHHH
Confidence 466677788888776421 3334555555554 688999999999999998555433 21 2233333334667788888
Q ss_pred HHHHHhCCChHHHHHHHHH--HHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHh
Q 047826 341 LLLLYWKMHRNDAMALALI--MNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRK 405 (746)
Q Consensus 341 ~~~~~~~~~~~~~~~lg~~--m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~ 405 (746)
...+.++++.-+. ....+ ..|.+....+++.. .+.-.+..-+.+.++++++.+..|.+...
T Consensus 244 ~~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 244 LVAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889988876544 22232 35666666655553 44434444555555555544444444333
No 153
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=45.87 E-value=71 Score=34.51 Aligned_cols=93 Identities=15% Similarity=0.264 Sum_probs=56.5
Q ss_pred HHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCCCeE-EEEEEe-cChhHHHHHHHhhcc-CCcEE
Q 047826 618 ALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSEYIR-YVKHVV-KDGAETVKIVHSIVS-EFELI 694 (746)
Q Consensus 618 Al~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~v~-y~e~~v-~~g~~~~~~i~~~~~-~~DLi 694 (746)
|....+|+-+..+.+ ...+|+++... .-+..++.+..+.++. |.|.+- ...+||..++++|.+ +.|||
T Consensus 34 a~~~v~rfL~~l~~~-~~~~flt~p~~--------mG~~~~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdlI 104 (355)
T COG3199 34 AIVRVKRFLKKLDAN-GDVEFLTPPGP--------MGESLAEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDLI 104 (355)
T ss_pred HHHHHHHHHHhcccc-CceEEEeCCcc--------cchhHHHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceEE
Confidence 455577777777722 24555555432 1223344444333444 888876 678999999999977 79999
Q ss_pred EEcccCCCCCccccccccCCCCCccch
Q 047826 695 IVGRRYNLESPQTSCLKQWSEFPELGI 721 (746)
Q Consensus 695 iVG~~~~~~~~~~~gl~~w~e~~eLG~ 721 (746)
++--+.|-..-..++.. .+-|-||+
T Consensus 105 vfaGGDGTarDVa~av~--~~vPvLGi 129 (355)
T COG3199 105 VFAGGDGTARDVAEAVG--ADVPVLGI 129 (355)
T ss_pred EEeCCCccHHHHHhhcc--CCCceEee
Confidence 88665543344444441 24577773
No 154
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=45.39 E-value=3.4e+02 Score=27.91 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHh
Q 047826 94 VQLIGSMGNIGIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVA 142 (746)
Q Consensus 94 ~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l 142 (746)
.+++..+ +|-.-.-|-.-+--+.+.+||+++..+.--..|.++.++.
T Consensus 64 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s 110 (232)
T PRK04288 64 GDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLI 110 (232)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 3444444555555667777777776555444444444444
No 155
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=45.25 E-value=7.1 Score=43.06 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHH-HHHHHHHHHHhhcccChHHH
Q 047826 43 ATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMG-NIGIAFFIFQSGVKMDISMV 121 (746)
Q Consensus 43 ~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la-~lgl~~llF~~Gle~d~~~l 121 (746)
...+.+....+.+.+.+|.+.+++-.++|++++..- .-+. -.+.++.+. .+-..+++...|+++|++.+
T Consensus 216 ~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~--~~~~--------~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l 285 (380)
T PF00999_consen 216 LLVLALILLLYGLAEILGLSGILGAFIAGLILSNSP--FAER--------LEEKLESFWYGFFIPLFFVFIGMSLDFSSL 285 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhccccccccccccceeeeeehcccccc--ccch--------hhhcccchhhHHHhhHHhhhhccccccccc
Confidence 334444444577888999999999999999998321 1111 122244444 56666788899999998887
Q ss_pred H
Q 047826 122 A 122 (746)
Q Consensus 122 ~ 122 (746)
.
T Consensus 286 ~ 286 (380)
T PF00999_consen 286 F 286 (380)
T ss_dssp -
T ss_pred c
Confidence 4
No 156
>PRK10711 hypothetical protein; Provisional
Probab=44.09 E-value=2.1e+02 Score=29.29 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHH
Q 047826 325 IALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVR 404 (746)
Q Consensus 325 ~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~ 404 (746)
.+-++++.+.-++++++.++.++.+..- ...|.||....=+...+..+.|-+..-.-..++++-++..++++++.|
T Consensus 92 ~~~~~vG~~v~i~s~~~l~~~lg~~~~~----~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk 167 (231)
T PRK10711 92 ISICFIGSVVAMVTGTAVALWMGATPEI----AASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLN 167 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555667777888888886642 235789999888888888888877655555566666666777777777
Q ss_pred hhc
Q 047826 405 KLY 407 (746)
Q Consensus 405 ~~~ 407 (746)
++-
T Consensus 168 ~~r 170 (231)
T PRK10711 168 AMR 170 (231)
T ss_pred HcC
Confidence 763
No 157
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=43.11 E-value=2.9e+02 Score=29.75 Aligned_cols=139 Identities=12% Similarity=0.051 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccch-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 047826 264 TVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTF-NSLIWHNIALAGLAALVKFGACALL 342 (746)
Q Consensus 264 ~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~-~~~~~~~~~~~~~~~~~K~~~~~~~ 342 (746)
.++.+.++|...|.-......+. .|.. ....+.+.|...|++++.+++.+. ..| ..........++.=++.++..
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~-~~~l~~~~~~fvl~Pll~~~~ 81 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNW-RLHLFVQAFNFVLFPLLGFGL 81 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888887543322221 1232 233366777789999998876542 234 223333333444444445555
Q ss_pred HHHhCCChHHHHHHHHHHHhH--HHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhc
Q 047826 343 LLYWKMHRNDAMALALIMNIK--GIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLY 407 (746)
Q Consensus 343 ~~~~~~~~~~~~~lg~~m~~k--G~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~ 407 (746)
.+.......+.+..|+...+- -.++-.+.-.....|-.... ....++..++..+++|.+...+.
T Consensus 82 ~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~A-l~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 82 SRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALA-LFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHH-HHHHHHHhhhhHhHHHHHHHHHh
Confidence 554432223446666543221 11222222222223333222 23333455555566776666554
No 158
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=41.60 E-value=4e+02 Score=31.84 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=59.5
Q ss_pred cceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhcccc
Q 047826 429 ELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLH 508 (746)
Q Consensus 429 e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 508 (746)
.-+||.-++||+..-+++++...++ ++ .+|++--|.+.+-.+... . + ..+.++.=-.|...
T Consensus 560 RPQILLlV~nPrss~~Lirf~N~LK---Kg--gLYilGHV~~gd~~~~~~--d----~----l~~q~~~W~s~vd~---- 620 (945)
T KOG1288|consen 560 RPQILLLVSNPRSSCNLIRFCNDLK---KG--GLYILGHVIVGDDFSASM--D----E----LQQQQRAWLSFVDD---- 620 (945)
T ss_pred cceEEEEecCCcccchHHHHHHhhc---cc--ceEEEEEEEecccccccc--c----h----hhHHHHHHHHHHHH----
Confidence 4579999999999999999999995 33 468887666655332110 0 0 00111111122222
Q ss_pred CcceEEEEEEEEcCCCChHHHHHHHHhh-----cCCcEEEecCccc
Q 047826 509 WGAASINAFTAISPPDLMHDDICTLALD-----KLASLVILPFHRT 549 (746)
Q Consensus 509 ~~~v~v~~~~~vs~~~~~~~~I~~~a~e-----~~a~lII~p~h~~ 549 (746)
..++.|+.+.--.++..+|-++..- -+.+.+|+|||..
T Consensus 621 ---~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 621 ---AGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred ---hhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 2334455544446777777777643 3779999999863
No 159
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=40.83 E-value=87 Score=29.22 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccC-CCceEEEecCC
Q 047826 523 PDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKA-PCSVGILIDHG 585 (746)
Q Consensus 523 ~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~A-pcsVgilvdr~ 585 (746)
.....+.+.+++++++++.||+|.-.+. ||..+......+.+.+++-++. +++| .++|..
T Consensus 36 ~~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr 96 (135)
T PF03652_consen 36 REKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDER 96 (135)
T ss_dssp CCCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECS
T ss_pred CchHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCC
Confidence 3688999999999999999999976543 5554444456788888888887 8998 556654
No 160
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=39.28 E-value=5.2e+02 Score=29.25 Aligned_cols=102 Identities=8% Similarity=-0.039 Sum_probs=62.9
Q ss_pred chhhHHHHHHHHhhcCCCC----chhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGP----PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKF 336 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~----~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~ 336 (746)
|.+..+=-...|++...++ ++.. -.+...+..+.+.+...-.|++++++.+... .| +.+.+-.+...+.-.
T Consensus 30 GvP~LllFl~iGm~aG~dGlg~I~fdN---y~~Ay~vg~lALaiILfdgG~~T~lss~r~a-~~-palsLATlGVl~Ts~ 104 (574)
T COG3263 30 GVPLLLLFLSIGMLAGVDGLGGIEFDN---YPFAYMVGNLALAIILFDGGFGTQLSSFRVA-AG-PALSLATLGVLITSG 104 (574)
T ss_pred CchHHHHHHHHHHHcCCCcccccccCc---cHHHHHHHHHHHHHHhhcCccCCcHHHHHHH-hh-hhHHHHHHHHHHHHH
Confidence 5555554555666665542 1111 1344445566666666678999988776543 33 434444444555566
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhHHHHH
Q 047826 337 GACALLLLYWKMHRNDAMALALIMNIKGIVE 367 (746)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~ 367 (746)
+....+.+.++.+|-|++.+|...+..-..+
T Consensus 105 Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAA 135 (574)
T COG3263 105 LTGVAAAYLLNLDWLEGLLIGAIVGSTDAAA 135 (574)
T ss_pred HHHHHHHHHhccHHHHHHHHHHhhccccHHH
Confidence 6667778888999999999998776554433
No 161
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=39.01 E-value=7e+02 Score=29.25 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=47.0
Q ss_pred HHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChHHHHHHHHHHHhH
Q 047826 293 ISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLY---------WKMHRNDAMALALIMNIK 363 (746)
Q Consensus 293 ~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~---------~~~~~~~~~~lg~~m~~k 363 (746)
...+++|....-.|+++|...+.+. | ..+..+.+++.+.-.+.+....++ .+++|.+++.+|.++++.
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n--~-~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaT 144 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFEN--L-GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAV 144 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCC
Confidence 3456788888889999999887654 2 223333333333322222222221 256999999999999998
Q ss_pred HHHHHH
Q 047826 364 GIVEMA 369 (746)
Q Consensus 364 G~v~l~ 369 (746)
.-+...
T Consensus 145 DPVAVl 150 (559)
T TIGR00840 145 DPVAVL 150 (559)
T ss_pred chHHHH
Confidence 877666
No 162
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=38.66 E-value=67 Score=30.71 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=24.5
Q ss_pred cChHHHHHHHHHhhhCCCeEEEEEEee
Q 047826 613 NDDREALTFAKRMVRDNKVRLTVVHFI 639 (746)
Q Consensus 613 ~ddreAl~~a~rma~~~~v~ltv~~~~ 639 (746)
+.|+|+++.|+++++..|.+++++-+-
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 568999999999999999999998865
No 163
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=38.16 E-value=3e+02 Score=27.95 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHH
Q 047826 324 NIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILV 403 (746)
Q Consensus 324 ~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~ 403 (746)
++.-++++.+.-+++++..++.++.+..-. ..+.+|....=+...+..+.|-...-.-...+++-++...++|++.
T Consensus 80 il~~~~~g~~~~~~~~~~l~~~lgl~~~~~----~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~ll 155 (215)
T PF04172_consen 80 ILVGVLVGSLVSIFSAVLLARLLGLSPEII----LSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLL 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHH
Confidence 344444455566667777788888866432 3578999888888888888887766555556666666667777777
Q ss_pred Hhh
Q 047826 404 RKL 406 (746)
Q Consensus 404 ~~~ 406 (746)
+++
T Consensus 156 k~~ 158 (215)
T PF04172_consen 156 KLL 158 (215)
T ss_pred hHc
Confidence 774
No 164
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=35.99 E-value=5e+02 Score=26.67 Aligned_cols=80 Identities=3% Similarity=-0.108 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHH
Q 047826 324 NIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILV 403 (746)
Q Consensus 324 ~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~ 403 (746)
+.+-++++.+.-+++++..+++++.+.. +-..|.||....=+...+..+.|-+..-.-...+++-++..++++++.
T Consensus 96 Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~ll 171 (232)
T PRK04288 96 ILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFL 171 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556667777888888888763 233578999998888888888887766666666667777777788887
Q ss_pred Hhhc
Q 047826 404 RKLY 407 (746)
Q Consensus 404 ~~~~ 407 (746)
+++-
T Consensus 172 k~~~ 175 (232)
T PRK04288 172 KLFR 175 (232)
T ss_pred HHcC
Confidence 7763
No 165
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=35.18 E-value=97 Score=35.90 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHhhHHHHHHHHhhccCcccccchhhhHHHHHHHH---------HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHH
Q 047826 294 SGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALA---------GLAALVKFGACALLLLYWKMHRNDAMALALIMNIKG 364 (746)
Q Consensus 294 ~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~---------~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG 364 (746)
..+++|---.-.|.+++-..+..... .+.++. ++....|+.+. ....++++++|++.+|.+.+.--
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n~~---si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATD 176 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRNIG---SILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATD 176 (575)
T ss_pred HHHhhchhhhcccceechhhhhhhhH---HHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccC
Confidence 45666666667899998776554311 111111 12222233322 22345889999999999887654
Q ss_pred HHHH
Q 047826 365 IVEM 368 (746)
Q Consensus 365 ~v~l 368 (746)
-|..
T Consensus 177 PVtv 180 (575)
T KOG1965|consen 177 PVTV 180 (575)
T ss_pred chHH
Confidence 4443
No 166
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=34.26 E-value=6.7e+02 Score=27.61 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACA 340 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~ 340 (746)
.-.+.+|.+++|-.+.+.. . +++.+-.+.-......-+.-..+|.+.+-+.+.+..+. .++++-++++..--.+..
T Consensus 249 ~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl--~Il~LGlvAF~~~tagGv 324 (399)
T TIGR03136 249 VASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVS--ILLVLGITALLISGIGGV 324 (399)
T ss_pred cHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH--HHHHHHHHHHHHhhhHHH
Confidence 5678899999998888764 3 55555555443333333444678888887666555341 233333344443334444
Q ss_pred HHHH
Q 047826 341 LLLL 344 (746)
Q Consensus 341 ~~~~ 344 (746)
+.++
T Consensus 325 l~aK 328 (399)
T TIGR03136 325 LGGW 328 (399)
T ss_pred HHHH
Confidence 4443
No 167
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=34.07 E-value=1.3e+02 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCc-----ccccccchhhHHHHHHHHhhcC
Q 047826 238 VVRPAMLLIARMTPEGK-----EVSRTGFEFTVLGLYILGLAVP 276 (746)
Q Consensus 238 v~r~~~~~~~~~~~~~~-----~~~~~~G~~~~lgafiaGl~i~ 276 (746)
..-|.++++.+..+|++ ...+.|+-|+.+|+|+.|+.++
T Consensus 45 sm~P~LkKlY~~d~e~~~~Al~Rhl~fFNT~p~~~~~I~Gi~~a 88 (282)
T PRK11103 45 SMVPAIRRLYPENNEARKQAIKRHLEFFNTHPYVAAPILGVTLA 88 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCchhhhHHHHHHHH
Confidence 34577766654333331 1224679999999999999987
No 168
>PRK08185 hypothetical protein; Provisional
Probab=33.51 E-value=5e+02 Score=27.57 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=69.8
Q ss_pred EEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCcc
Q 047826 513 SINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPVT 592 (746)
Q Consensus 513 ~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~~ 592 (746)
-|-.+...+ ..+...|++.|++.++..||.-..+.-...+ . .+....+..-++++.||++=-|++..+....
T Consensus 14 aV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-----~-~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~ 85 (283)
T PRK08185 14 AVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG-----D-NFFAYVRERAKRSPVPFVIHLDHGATIEDVM 85 (283)
T ss_pred eEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc-----H-HHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Confidence 344554544 6788999999999999999988766533222 1 2677788899999999999889985322110
Q ss_pred ccCCCCcCCcceEEEEeccC-cChHHHHHHHHHhh---hCCCeEEE
Q 047826 593 HTDSSSADSLSNVAMLFIGG-NDDREALTFAKRMV---RDNKVRLT 634 (746)
Q Consensus 593 ~~~~~~~~~~~~I~~~f~gg-~ddreAl~~a~rma---~~~~v~lt 634 (746)
..- ...... +-+.|. -+++|-+++++++. ...|+.+.
T Consensus 86 ~ai---~~Gf~S--VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 86 RAI---RCGFTS--VMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHH---HcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 000 001112 445554 35667677766654 66777663
No 169
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=33.37 E-value=7.4e+02 Score=27.83 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHH-----HhhHHHHHHHHhhccCccccc
Q 047826 241 PAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPHGPPLGSALVNKFDTMIS-----GFFLPIFVTTSAMRLHDLSLH 315 (746)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~-----~~f~PiFF~~~G~~~d~~~l~ 315 (746)
-++.|+-+|.|- +++..|-..++.-|.....+-.+ -+.+...+.++.+.. .||+...-+.+=+.+|-..|.
T Consensus 42 ~~l~~IG~riPi---~k~yiGGg~il~~f~ps~Lv~~~-~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLi 117 (414)
T PF03390_consen 42 FLLGEIGDRIPI---LKDYIGGGAILCIFVPSALVYFG-LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLI 117 (414)
T ss_pred HHHHHHHhhChh---hhccCChHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHH
Confidence 345677777662 44556888888888877776654 344455555555432 455555555455556655555
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH--HHHh---HHHHHHHHHHhhhc--CCCCChhhHHHH
Q 047826 316 TFNSLIWHNIALAGLAALVKFGACALLLLYWKMHRNDAMALAL--IMNI---KGIVEMAFYTFASD--GRYVSPNMFRFM 388 (746)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~--~m~~---kG~v~l~~~~~~~~--~~~i~~~~~~~l 388 (746)
+.. .-.+..++...++-++.+.+...++|.+++|++.-=. .|+. -|.+.+. ..|+ .|.-.++.++.+
T Consensus 118 ka~---~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS---~~Ya~~~g~~~~~~~s~~ 191 (414)
T PF03390_consen 118 KAF---ARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLS---QIYAEALGQDAEEYFSQL 191 (414)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHH---HHHHHHhCCCHHHHHHHH
Confidence 431 2234444556666777777888889999998875432 1211 2333332 2222 243345566666
Q ss_pred HHHHHHHHhhh---HHHHHhhcCcc
Q 047826 389 LGVVIVTGSVV---PILVRKLYDPS 410 (746)
Q Consensus 389 v~~~lltt~i~---~~l~~~~~~p~ 410 (746)
+-++++..+++ +-+.+++-++.
T Consensus 192 ipa~~lgNi~AIi~aglL~~lg~~~ 216 (414)
T PF03390_consen 192 IPALTLGNIFAIIFAGLLNKLGKKK 216 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66666555443 33444444433
No 170
>COG2431 Predicted membrane protein [Function unknown]
Probab=32.98 E-value=3.2e+02 Score=28.74 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhcccC
Q 047826 63 IFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGIAFFIFQSGVKMD 117 (746)
Q Consensus 63 ~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl~~llF~~Gle~d 117 (746)
.+.+..+.|+++|-..-.+. ...+...+..+.+++|.+|.++.
T Consensus 108 k~~~~vl~g~~~G~l~~~~~------------~~~~~a~~~~L~~LlF~iGi~l~ 150 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL------------NFPENASEYLLYLLLFLIGIQLG 150 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc------------cCchhHHHHHHHHHHHHHHHHhc
Confidence 56677778888774321111 11455678889999999999886
No 171
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=32.20 E-value=16 Score=32.21 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=0.0
Q ss_pred ecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccC---CCCCccch
Q 047826 674 VKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQW---SEFPELGI 721 (746)
Q Consensus 674 v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w---~e~~eLG~ 721 (746)
.+|.+++.+++++. +.||++|| .+.|+..|+.|. ...|-.||
T Consensus 48 ~~d~~~l~~~a~~~--~idlvvvG----PE~pL~~Gl~D~l~~~gi~vfGP 92 (100)
T PF02844_consen 48 ITDPEELADFAKEN--KIDLVVVG----PEAPLVAGLADALRAAGIPVFGP 92 (100)
T ss_dssp TT-HHHHHHHHHHT--TESEEEES----SHHHHHTTHHHHHHHTT-CEES-
T ss_pred CCCHHHHHHHHHHc--CCCEEEEC----ChHHHHHHHHHHHHHCCCcEECc
No 172
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=31.34 E-value=8e+02 Score=27.65 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=50.7
Q ss_pred HhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHhHHHHHHH
Q 047826 295 GFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLYW--KMHRNDAMALALIMNIKGIVEMA 369 (746)
Q Consensus 295 ~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~~~~~~~~lg~~m~~kG~v~l~ 369 (746)
.+++|+-....|+++|...+.+. | .....+.....+...++.....++. ++|+..++.+|..+++-.-+.+.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~--~-~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRV--W-RSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHh--H-HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 66777777789999999988754 2 2344444445555555555555655 88999999999999887666554
No 173
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=31.00 E-value=1.4e+02 Score=31.31 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=60.4
Q ss_pred EEeccCcChHHHHHHHHHhhh-CCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC--CC-eEEEEEEecChhHHHH
Q 047826 607 MLFIGGNDDREALTFAKRMVR-DNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS--EY-IRYVKHVVKDGAETVK 682 (746)
Q Consensus 607 ~~f~gg~ddreAl~~a~rma~-~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~--~~-v~y~e~~v~~g~~~~~ 682 (746)
+++.=.+.|+-|++.|.|+.+ ..+.++|++.+=++.. ++.+++.-.. ++ +...+.. ..+.|+..
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------~~~lr~aLAmGaDraili~d~~-~~~~d~~~ 98 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------EEALREALAMGADRAILITDRA-FAGADPLA 98 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------HHHHHHHHhcCCCeEEEEeccc-ccCccHHH
Confidence 455556889999999999999 7999999999754431 1223332222 22 2222211 12333333
Q ss_pred H---HHhh--ccCCcEEEEcccCCC-CCccc-cccccCCCCCccchhhhhh
Q 047826 683 I---VHSI--VSEFELIIVGRRYNL-ESPQT-SCLKQWSEFPELGILGDLL 726 (746)
Q Consensus 683 ~---i~~~--~~~~DLiiVG~~~~~-~~~~~-~gl~~w~e~~eLG~igd~l 726 (746)
. +... ..++|||+.|..... .+-++ ..+.+|-..|..+.+-++-
T Consensus 99 ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 99 TAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 3 3222 226899999998632 22222 2223444446666665554
No 174
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=30.38 E-value=64 Score=34.74 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=44.3
Q ss_pred CcceEEEEecc-CcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCCCeEEEEEEecChhH
Q 047826 601 SLSNVAMLFIG-GNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSEYIRYVKHVVKDGAE 679 (746)
Q Consensus 601 ~~~~I~~~f~g-g~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~v~y~e~~v~~g~~ 679 (746)
.+++|++++.- |+--+.-++.+.+ +.|.++++++...-..+ +...+
T Consensus 13 ~p~~I~vITs~~gAa~~D~~~~~~~--r~~~~~~~~~p~~vQG~-------------------------------~A~~~ 59 (319)
T PF02601_consen 13 FPKRIAVITSPTGAAIQDFLRTLKR--RNPIVEIILYPASVQGE-------------------------------GAAAS 59 (319)
T ss_pred CCCEEEEEeCCchHHHHHHHHHHHH--hCCCcEEEEEecccccc-------------------------------chHHH
Confidence 36678887765 4556666777777 77777777776432221 12344
Q ss_pred HHHHHHhhc-----cCCcEEEEcccCCC
Q 047826 680 TVKIVHSIV-----SEFELIIVGRRYNL 702 (746)
Q Consensus 680 ~~~~i~~~~-----~~~DLiiVG~~~~~ 702 (746)
++++++... .++|+||++|++|-
T Consensus 60 I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 60 IVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHhccccccccEEEEecCCCC
Confidence 556665553 25999999999873
No 175
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=30.17 E-value=4.2e+02 Score=23.99 Aligned_cols=93 Identities=12% Similarity=0.050 Sum_probs=50.1
Q ss_pred CCCCCCCcEEEEEEeeeccCCCcceeeecccc-cc-cccccccchHHHHHHHHhccccCcceEEEEEEEEcCCCChHHHH
Q 047826 453 SPTNESPMVVNVLHLIKLNGQATSIFVSHQSK-NK-NIYTYCYSENVILSFKKFGGLHWGAASINAFTAISPPDLMHDDI 530 (746)
Q Consensus 453 ~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~-~~-~~~~~~~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I 530 (746)
+..+.-.-.|.-+|++|.++-. +-+..++.- .. ........+...+-+++..+.....+-++.- -.++.+-+++
T Consensus 16 aG~~gL~r~V~~v~v~e~~d~~-~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~---~~~~~iP~~~ 91 (123)
T PF07905_consen 16 AGENGLDRPVRWVHVMEAPDPS-DWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTG---RYLDEIPEEI 91 (123)
T ss_pred cCCccCCCcEEEEEEeecCCHH-HhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEecc---CccccCCHHH
Confidence 3333344578889999988632 111111100 00 0000001123445555565543333333322 1246788999
Q ss_pred HHHHhhcCCcEEEecCccc
Q 047826 531 CTLALDKLASLVILPFHRT 549 (746)
Q Consensus 531 ~~~a~e~~a~lII~p~h~~ 549 (746)
.+.|++.+..++.+||+-+
T Consensus 92 i~~A~~~~lPli~ip~~~~ 110 (123)
T PF07905_consen 92 IELADELGLPLIEIPWEVP 110 (123)
T ss_pred HHHHHHcCCCEEEeCCCCC
Confidence 9999999999999998544
No 176
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=29.95 E-value=1.1e+02 Score=27.50 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=28.2
Q ss_pred CCCCCccchHHHHHHHHHHHH-HHHHHHHHHhhhCCChHHHHHHHHHhcCcc
Q 047826 27 DYKWLDYTTPRIMFLIATMLI-ISQAFHSVLKRFGIPIFISQIFAGLLLSRP 77 (746)
Q Consensus 27 ~~~pl~~~~~~~l~~i~~il~-~a~~~~~l~~rl~~P~iv~~Il~GiilGP~ 77 (746)
-..|++|++|.-++.=.+..+ +..+++ ++-...--.+.-.++.|++.||+
T Consensus 60 ~RTPlTHT~pRSv~WGli~slp~i~~l~-~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 60 VRTPLTHTLPRSVLWGLIPSLPLIILLY-YYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred ecCCCccCcchhhHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHhhhccchH
Confidence 588999999864443222211 111122 22222334556677899999997
No 177
>PRK06801 hypothetical protein; Provisional
Probab=29.64 E-value=6.2e+02 Score=26.90 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=69.7
Q ss_pred eEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCc
Q 047826 512 ASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPV 591 (746)
Q Consensus 512 v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~ 591 (746)
.-|-.|...+ ..+...|++.|++.++..||.-..+.-...+ -..+....+...++++-||++=-|++..+...
T Consensus 18 yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i 90 (286)
T PRK06801 18 YALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYIS-----LESLVEAVKFEAARHDIPVVLNLDHGLHFEAV 90 (286)
T ss_pred ceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444555544 6788999999999999999987665532222 13477888899999999999998998532211
Q ss_pred cccCCCCcCCcceEEEEeccC-cChHHHHHHHHHh---hhCCCeEE
Q 047826 592 THTDSSSADSLSNVAMLFIGG-NDDREALTFAKRM---VRDNKVRL 633 (746)
Q Consensus 592 ~~~~~~~~~~~~~I~~~f~gg-~ddreAl~~a~rm---a~~~~v~l 633 (746)
..-- ......| -|.|. -+++|-++..+++ |+..++.+
T Consensus 91 ~~Ai---~~GftSV--m~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 91 VRAL---RLGFSSV--MFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHH---HhCCcEE--EEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000 0002222 23554 3457777776555 77778765
No 178
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=29.21 E-value=2.2e+02 Score=30.05 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCCc-----ccccccchhhHHHHHHHHhhcC------CCCchhhHHHHHhh------------HhHH
Q 047826 238 VVRPAMLLIARMTPEGK-----EVSRTGFEFTVLGLYILGLAVP------HGPPLGSALVNKFD------------TMIS 294 (746)
Q Consensus 238 v~r~~~~~~~~~~~~~~-----~~~~~~G~~~~lgafiaGl~i~------~~~~~~~~l~~kl~------------~~~~ 294 (746)
..-|.++++.+..+|++ ...+.|..++.+|+++.|+.++ ++++...+..+.+. ++..
T Consensus 35 ~m~P~L~KlY~~d~e~~~~Alkrhl~fFNT~p~~~~~I~Gi~~amEE~~A~g~~~~~e~I~~iKt~LMGPlAGIGDSlf~ 114 (271)
T TIGR00828 35 AMIPAIKKLYPDDKAGRSAALKRHLEFFNTHPNLVGPIMGVTAAMEEKRANGAGIDDGAINGIKVGLMGPIAGVGDPIFW 114 (271)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCchhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHccchhhhhhHHHH
Confidence 34566666654333321 1224679999999999999997 33222333333332 3345
Q ss_pred HhhHHHHHH-HHhhccC
Q 047826 295 GFFLPIFVT-TSAMRLH 310 (746)
Q Consensus 295 ~~f~PiFF~-~~G~~~d 310 (746)
+.+.|++.. .+++..+
T Consensus 115 gt~~pI~~~Ia~~lA~~ 131 (271)
T TIGR00828 115 GTLRPIMAALGASLALS 131 (271)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 667777663 3444444
No 179
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=29.18 E-value=2e+02 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=24.6
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
++++.|.||.|.--|+.++.+. |-++.-+.+..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEEec
Confidence 4789999999999999998883 444444444433
No 180
>COG2035 Predicted membrane protein [Function unknown]
Probab=27.74 E-value=7.4e+02 Score=26.09 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCc
Q 047826 35 TPRIMFLIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSR 76 (746)
Q Consensus 35 ~~~~l~~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP 76 (746)
.|+..-.+.-+..+|+++.++++. -|..+-.-.+|+++|.
T Consensus 59 i~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~s 98 (276)
T COG2035 59 IPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGS 98 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHH
Confidence 344444555577788888888887 5666666778998873
No 181
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=27.73 E-value=8.2e+02 Score=26.61 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHhcCccccccccccccccCcccHHHHHHHHHHHH------HHHHHHhhc
Q 047826 41 LIATMLIISQAFHSVLKRFGIPIFISQIFAGLLLSRPVLQVIKVADKIITPEHVQLIGSMGNIGI------AFFIFQSGV 114 (746)
Q Consensus 41 ~i~~il~~a~~~~~l~~rl~~P~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~~~~~l~~la~lgl------~~llF~~Gl 114 (746)
++..+++-..+++.-.+|---|.+.-.|=.|+++...-+.-..+ ..........+..+-+.|+ .++.+-+|-
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~--~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGA 81 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMD--QPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGA 81 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcc--cccccCCCChHHHHHHHhhhcchhhHHHHHHHhH
Confidence 34455555566677777777888888888999888654322110 0000001122332222222 245566777
Q ss_pred ccChHHHHhchhhHH
Q 047826 115 KMDISMVAKVGRKAW 129 (746)
Q Consensus 115 e~d~~~l~~~~~~~~ 129 (746)
-+|.+-+..+.|..+
T Consensus 82 mtDFgpllanP~~~l 96 (360)
T PF03977_consen 82 MTDFGPLLANPKTLL 96 (360)
T ss_pred HHhhHHHHhCHHHHH
Confidence 889998888887743
No 182
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=27.50 E-value=3.2e+02 Score=28.35 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.7
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCC--CeEEEEEEeee
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDN--KVRLTVVHFIA 640 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~--~v~ltv~~~~~ 640 (746)
..+|++++.||.|.--.|.++.++.+.. +.++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 4589999999999988888888887654 45777777654
No 183
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=26.84 E-value=3.2e+02 Score=25.18 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCcccccccchhhHHHHHHHHhhcCCCC---chhhHHHHHhhHhHHHhhHHHHHHHH
Q 047826 230 TFIVIVMVVVRPAMLLIARM-TPEGKEVSRTGFEFTVLGLYILGLAVPHGP---PLGSALVNKFDTMISGFFLPIFVTTS 305 (746)
Q Consensus 230 ~~~~~~~~v~r~~~~~~~~~-~~~~~~~~~~~G~~~~lgafiaGl~i~~~~---~~~~~l~~kl~~~~~~~f~PiFF~~~ 305 (746)
.+....+-+.|+.+.+...+ ...+-|.. -=.--++|+|+.|+...-.. +..+.+. ..+..+|+- -|=.++
T Consensus 9 ~~GGa~GA~lR~~l~~~~~~~~~~~fP~G--Tl~vNv~GsFllG~~~~~~~~~~~~~~~~~---~~l~tGflG-glTTFS 82 (126)
T COG0239 9 AIGGALGALLRYLLSLLVNRRLGPGFPLG--TLLVNVVGSFLLGFLTALFAVRLISSEDWR---LLLGTGFLG-GLTTFS 82 (126)
T ss_pred HHhhHHHHHHHHHHHHHhhccccCCCcHH--HHHHHHHHHHHHHHHHHHHhccCCCcHHHH---HHHHHHHcc-chhhHH
Confidence 33445566778777655443 22221110 01234678888888766331 1111111 112233333 244555
Q ss_pred hhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 306 AMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACALLLLY 345 (746)
Q Consensus 306 G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~ 345 (746)
-+..|.-.+.+...| ......+.+.++.-++++++..+.
T Consensus 83 Tfs~E~~~L~~~~~~-~~a~~yi~~sv~~gl~a~~lG~~l 121 (126)
T COG0239 83 TFSLETVSLLQEGQY-LLALAYILLSVLLGLLAVFLGLLL 121 (126)
T ss_pred HHHHHHHHHHHCccH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665444333233 335556666555566666655443
No 184
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=26.79 E-value=1.5e+02 Score=27.72 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=42.9
Q ss_pred hHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCC
Q 047826 526 MHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHG 585 (746)
Q Consensus 526 ~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~ 585 (746)
..+.+.+++++++++.||+|.-.+ .+|.........+.+.+++-++-+++| +++|.-
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr 98 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDER 98 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 478899999999999999997654 356544444557888888877778887 556654
No 185
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=26.78 E-value=2.7e+02 Score=28.34 Aligned_cols=40 Identities=8% Similarity=-0.048 Sum_probs=29.5
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCC
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDD 644 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~ 644 (746)
..++++.|.||+|+--.|.++.+.. ++ .+.++.+-+...+
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~-~~--~i~vv~vDTg~~f 64 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSIS-EP--MIPVIFIDTLYHF 64 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhh-CC--CCCEEEEeCCCCC
Confidence 3468899999999999999998876 23 3667776665544
No 186
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=26.49 E-value=8.5e+02 Score=26.39 Aligned_cols=58 Identities=7% Similarity=0.111 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhh
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNS 319 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~ 319 (746)
.-.+.+|.+++|-.+.+.. .-+++.+-.+.-......-+.-..+|.+.+-+.+.+..+
T Consensus 211 ~a~pLig~Lm~GnllrEsG-v~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~t 268 (354)
T TIGR01109 211 KALPLVGMLMFGNLMRESG-VVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQT 268 (354)
T ss_pred chHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHH
Confidence 5677888888888887763 233444433333223333333457788887666554433
No 187
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=26.17 E-value=91 Score=29.68 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=24.5
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
|+++.|.||+|..-.|.++.+...+. .++++.+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg 34 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTG 34 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-S
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecC
Confidence 57899999999999999998888774 56665443
No 188
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=26.15 E-value=6.4e+02 Score=27.30 Aligned_cols=84 Identities=21% Similarity=0.197 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH-HhhhHHH
Q 047826 324 NIALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVT-GSVVPIL 402 (746)
Q Consensus 324 ~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~llt-t~i~~~l 402 (746)
+...+.+.++.-+++..+..++.|++..|+..++..-+.-+.+.++.+...++..-++.+-|...+.+.+=+ .+++..+
T Consensus 57 ~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~ 136 (327)
T PF05982_consen 57 LLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALL 136 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHH
Confidence 333344444444444455555679999999999988888888888888877877777777766554444322 3344444
Q ss_pred HHhhc
Q 047826 403 VRKLY 407 (746)
Q Consensus 403 ~~~~~ 407 (746)
..+++
T Consensus 137 L~~~~ 141 (327)
T PF05982_consen 137 LARLF 141 (327)
T ss_pred HHHHH
Confidence 43333
No 189
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=25.87 E-value=62 Score=31.03 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=23.2
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEee
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFI 639 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~ 639 (746)
++.++|.||+|...| .-|-+..|..++++.++
T Consensus 2 ~v~vLfSGGKDSSLa----A~iL~klgyev~LVTvn 33 (198)
T COG2117 2 DVYVLFSGGKDSSLA----ALILDKLGYEVELVTVN 33 (198)
T ss_pred ceEEEecCCCchhHH----HHHHHHhCCCcEEEEEE
Confidence 578999999997655 44555667777777765
No 190
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=25.65 E-value=6.4e+02 Score=27.58 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=49.5
Q ss_pred EEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCcccccc-CCc-cccc--------chhhHHHHHHHhccCCCceEEEec
Q 047826 514 INAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYI-DGS-LESE--------DQTVRNLNLCVLEKAPCSVGILID 583 (746)
Q Consensus 514 v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~-dg~-~~~~--------~~~~~~~n~~Vl~~ApcsVgilvd 583 (746)
|-.+...+ ..+.+.|++.|++.++..||.-..+.... .+. ++.. ...+....+...+++++||++=.|
T Consensus 18 V~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLD 95 (345)
T cd00946 18 IPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTD 95 (345)
T ss_pred EEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECC
Confidence 33444444 67889999999999999999886654221 111 1100 013677778899999999999889
Q ss_pred CCCC
Q 047826 584 HGNL 587 (746)
Q Consensus 584 r~~~ 587 (746)
++..
T Consensus 96 Hg~~ 99 (345)
T cd00946 96 HCAK 99 (345)
T ss_pred CCCC
Confidence 9863
No 191
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=25.13 E-value=5.9e+02 Score=24.03 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCC---hHHHHHHHHHhcCccccccccccccccCcc--cHHHHHHHHHHHHHHHHHH
Q 047826 37 RIMFLIATMLIISQAFHSVLKRFGIP---IFISQIFAGLLLSRPVLQVIKVADKIITPE--HVQLIGSMGNIGIAFFIFQ 111 (746)
Q Consensus 37 ~~l~~i~~il~~a~~~~~l~~rl~~P---~iv~~Il~GiilGP~~Lg~~~~~~~~lfp~--~~~~l~~la~lgl~~llF~ 111 (746)
.++.|+++++.+..+...+.+-+++| +++|.++.=+.|. ++..+ +. ....--.++++++.|+==.
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk-------~~~v~~~a~~LL~~m~LfFVPag 77 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVK-------LEQVESLGTALTNNIGFLFVPSG 77 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-------HHHHHHHHHHHHHHHHHHHhhhH
Confidence 46778888887777666666666655 2444443322221 23322 10 1122233445555555445
Q ss_pred hhcccChHHHHhchhhHHHHHHHHHHHHH
Q 047826 112 SGVKMDISMVAKVGRKAWYIGILSVIAPL 140 (746)
Q Consensus 112 ~Gle~d~~~l~~~~~~~~~i~~~~~~~p~ 140 (746)
+|+=..++.++.++...+.+-+.|.++.+
T Consensus 78 VGim~~~~ll~~~~~~Il~~ivvSTllvl 106 (141)
T PRK04125 78 ISVINSLGVMSQYPVQIIGVIIVATILLL 106 (141)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655666677766655444444444333
No 192
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=24.53 E-value=4.6e+02 Score=25.31 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=55.2
Q ss_pred EeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCC-CeEEEEEEecChhHHHHHHHh
Q 047826 608 LFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSE-YIRYVKHVVKDGAETVKIVHS 686 (746)
Q Consensus 608 ~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~-~v~y~e~~v~~g~~~~~~i~~ 686 (746)
+..||. ..-...+++.|+++...++-++. ++. ..+...++.+++.+... ++.|..--+.|.+++.+++.+
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~---r~~-----~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~ 74 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLG---RSG-----APSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQ 74 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEE---SSG-----GGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHT
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEec---cCC-----CccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHH
Confidence 344554 56789999999999988888777 221 11223446777787665 899988889999999999988
Q ss_pred hccCC---cEEEEcccC
Q 047826 687 IVSEF---ELIIVGRRY 700 (746)
Q Consensus 687 ~~~~~---DLiiVG~~~ 700 (746)
...++ |-|+-+..-
T Consensus 75 ~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 75 LRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp SHTTSS-EEEEEE----
T ss_pred HHhccCCcceeeeeeee
Confidence 76544 556666654
No 193
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.37 E-value=2.5e+02 Score=29.83 Aligned_cols=115 Identities=9% Similarity=0.114 Sum_probs=68.9
Q ss_pred eEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCc
Q 047826 512 ASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPV 591 (746)
Q Consensus 512 v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~ 591 (746)
..|-.+...+ ..+.+.|++.|++.++..||.-..+.-...| ...+....+...+++++||++=-|++..+...
T Consensus 18 yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i 90 (284)
T PRK12737 18 YAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHEDLDDI 90 (284)
T ss_pred ceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444555544 6788999999999999999977654432212 12367778899999999999999998632211
Q ss_pred cccCCCCcCCcceEEEEeccCc-ChHHHHHH---HHHhhhCCCeEE--EEEEe
Q 047826 592 THTDSSSADSLSNVAMLFIGGN-DDREALTF---AKRMVRDNKVRL--TVVHF 638 (746)
Q Consensus 592 ~~~~~~~~~~~~~I~~~f~gg~-ddreAl~~---a~rma~~~~v~l--tv~~~ 638 (746)
..-- .....+ +-|+|.. +..|-++. +.++|...|+.+ .+=++
T Consensus 91 ~~ai---~~GftS--VMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~i 138 (284)
T PRK12737 91 KKKV---RAGIRS--VMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRL 138 (284)
T ss_pred HHHH---HcCCCe--EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 0000 001222 3345542 44555554 444556566665 44444
No 194
>PRK14561 hypothetical protein; Provisional
Probab=23.99 E-value=1.3e+02 Score=29.92 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=17.5
Q ss_pred eEEEEeccCcChHHHHHHHHHh
Q 047826 604 NVAMLFIGGNDDREALTFAKRM 625 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rm 625 (746)
+|++.+.||.|.--.+..+.+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~ 23 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF 23 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc
Confidence 5889999999988877766554
No 195
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=23.98 E-value=7.9e+02 Score=25.14 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHH
Q 047826 325 IALAGLAALVKFGACALLLLYWKMHRNDAMALALIMNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVR 404 (746)
Q Consensus 325 ~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~ 404 (746)
.+-..++.+.-+.+++..++.++.+.. .. ..+.+|....=+...+..+.|-...-.-...+++-++...+++++.+
T Consensus 91 l~~~~~G~~~~~~s~~~la~~lg~~~~--i~--~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~ 166 (226)
T TIGR00659 91 ILNVAVGSVIAIISGTLLALLLGLGPE--II--ASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLR 166 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566777788888888743 22 25789999888888888888776555555555666666667777777
Q ss_pred hh
Q 047826 405 KL 406 (746)
Q Consensus 405 ~~ 406 (746)
++
T Consensus 167 ~~ 168 (226)
T TIGR00659 167 YF 168 (226)
T ss_pred Hc
Confidence 65
No 196
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.77 E-value=2.6e+02 Score=29.75 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=67.0
Q ss_pred EEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCcc
Q 047826 513 SINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPVT 592 (746)
Q Consensus 513 ~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~~ 592 (746)
-|-.+...+ ..+...+++.|++.++..||.-..+.-...| ...+........+++++||++=-|++..+....
T Consensus 19 aV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~ 91 (284)
T PRK12857 19 AVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGTDFEQVM 91 (284)
T ss_pred eEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Confidence 344555544 6888999999999999999987655432222 123677778888999999999989986322110
Q ss_pred ccCCCCcCCcceEEEEeccC-cChHHHHHHHH---HhhhCCCeEEE
Q 047826 593 HTDSSSADSLSNVAMLFIGG-NDDREALTFAK---RMVRDNKVRLT 634 (746)
Q Consensus 593 ~~~~~~~~~~~~I~~~f~gg-~ddreAl~~a~---rma~~~~v~lt 634 (746)
.-- .....+| -|+|. -+.+|-++..+ ++|...|+.+.
T Consensus 92 ~ai---~~GftSV--M~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 92 KCI---RNGFTSV--MIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HHH---HcCCCeE--EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 000 0012222 34554 24556555544 45666676664
No 197
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.12 E-value=9.6e+02 Score=25.81 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=11.9
Q ss_pred HHHHHHhhcccChHHHHhch
Q 047826 106 AFFIFQSGVKMDISMVAKVG 125 (746)
Q Consensus 106 ~~llF~~Gle~d~~~l~~~~ 125 (746)
++|.--+|+-.|+..+-++.
T Consensus 283 VlFFvsVGmlf~P~~l~~~p 302 (408)
T COG4651 283 VLFFVSVGMLFDPMILIQQP 302 (408)
T ss_pred HHHHHHhhhhcCcHHhhcch
Confidence 44445667777776665554
No 198
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.92 E-value=1.7e+02 Score=30.52 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=14.6
Q ss_pred HHHHHHhhccCCcEEEEcccCCC
Q 047826 680 TVKIVHSIVSEFELIIVGRRYNL 702 (746)
Q Consensus 680 ~~~~i~~~~~~~DLiiVG~~~~~ 702 (746)
+-.++++. ..|..++|.|++.
T Consensus 132 l~~al~~~--~~~a~~~G~Rrde 152 (261)
T COG0175 132 LKRALDEY--GFDAWFTGLRRDE 152 (261)
T ss_pred HHHHHhhc--CCceEEEeccccc
Confidence 44555554 3499999999864
No 199
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.36 E-value=1e+03 Score=26.38 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=41.5
Q ss_pred ccC-cChHHHHHHHHHhhhCC------CeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCC-CeEEEEEEecChhHHH
Q 047826 610 IGG-NDDREALTFAKRMVRDN------KVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSE-YIRYVKHVVKDGAETV 681 (746)
Q Consensus 610 ~gg-~ddreAl~~a~rma~~~------~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~-~v~y~e~~v~~g~~~~ 681 (746)
..| .|..|-.+...++.+.. .+++.++.+++-+........++..++|.+.++... .+..+ .+-|.|+.
T Consensus 279 i~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR---~s~G~DI~ 355 (371)
T PRK14461 279 LQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVR---VERGVEIA 355 (371)
T ss_pred ECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEe---CCCCcChh
Confidence 345 45444444444555555 799999999874322211122233445555555432 32222 34588887
Q ss_pred HHHHhhccCC
Q 047826 682 KIVHSIVSEF 691 (746)
Q Consensus 682 ~~i~~~~~~~ 691 (746)
++.-.+..+|
T Consensus 356 AACGQL~~~~ 365 (371)
T PRK14461 356 AACGQLAGRH 365 (371)
T ss_pred hcCcccccCC
Confidence 7765554444
No 200
>PRK14226 camphor resistance protein CrcB; Provisional
Probab=22.33 E-value=5.1e+02 Score=23.98 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcC
Q 047826 229 LTFIVIVMVVVRPAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVP 276 (746)
Q Consensus 229 ~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~ 276 (746)
++.....+-+.|..+....++....-|.. .=.--++|+|+.|+...
T Consensus 8 V~lGG~lGa~~Ry~l~~~~~~~~~~fP~g--Tl~VNv~GsfllG~l~~ 53 (130)
T PRK14226 8 VGIGGGFGAMARFALTQATASISKQIPLG--ILLCNIIGSLIIGMMAA 53 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHH--HHHHHHHHHHHHHHHHH
Confidence 33444556677877665544322221211 01344789999998763
No 201
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=22.31 E-value=9.6e+02 Score=25.53 Aligned_cols=133 Identities=13% Similarity=0.082 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHhhcCCCC-chhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 047826 262 EFTVLGLYILGLAVPHGP-PLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACA 340 (746)
Q Consensus 262 ~~~~lgafiaGl~i~~~~-~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~ 340 (746)
.++.+=|.++|+++.-.+ +..+.+.+-++.+ .....|+-...+|+.++...+... | .......++..+.-++.++
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~~--~-~~~~~~~~~klil~P~i~~ 256 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKLG--V-RDAILALIVRFLVQPAVMA 256 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhccC--h-HHHHHHHHHHHHHHHHHHH
Confidence 355555777777776432 2345566666665 688999999999999987665432 2 2344455556666666667
Q ss_pred HHHHHhCCChHHHHHHHHH--HHhHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHH
Q 047826 341 LLLLYWKMHRNDAMALALI--MNIKGIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILV 403 (746)
Q Consensus 341 ~~~~~~~~~~~~~~~lg~~--m~~kG~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~ 403 (746)
...+..+.+.... ...++ -.|-+....+++. +.|. +++.-+..+....+.++++-|+.
T Consensus 257 ~~~~~~~l~~~~~-~~~vl~aa~P~a~~~~i~A~---~y~~-~~~~aa~~v~~sT~ls~~tlp~~ 316 (321)
T TIGR00946 257 GISKLIGLRGLEL-SVAILQAALPGGAVAAVLAT---EYEV-DVELASTAVTLSTVLSLISLPLF 316 (321)
T ss_pred HHHHHhCCChHHH-HHHHHHHcCChhhHHHHHHH---HhCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777764332 22222 2344544444444 4443 44444444333333344444443
No 202
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=22.15 E-value=5.8e+02 Score=26.18 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=53.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCcccc
Q 047826 515 NAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPVTHT 594 (746)
Q Consensus 515 ~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~~~~ 594 (746)
..++.++|.+...++..+.+.+..+|.|++|- .+|. +......+.+.+=+ .+-||.++.... .++
T Consensus 9 ~h~~liDP~k~~~~~~~~~~~~~gtdai~vGG-----S~~v---t~~~~~~~v~~ik~-~~lPvilfp~~~---~~i--- 73 (232)
T PRK04169 9 LHVTLLDPDKPLPDEALEAICESGTDAIIVGG-----SDGV---TEENVDELVKAIKE-YDLPVILFPGNI---EGI--- 73 (232)
T ss_pred eEEEEECCCCCCCHHHHHHHHhcCCCEEEEcC-----CCcc---chHHHHHHHHHHhc-CCCCEEEeCCCc---ccc---
Confidence 46778999888888887888899999999992 1221 11123444444444 777876653322 212
Q ss_pred CCCCcCCcceEEEEeccCcChHHHH
Q 047826 595 DSSSADSLSNVAMLFIGGNDDREAL 619 (746)
Q Consensus 595 ~~~~~~~~~~I~~~f~gg~ddreAl 619 (746)
....+-+++|..-..+|.+++
T Consensus 74 ----~~~aDa~l~~svlNs~~~~~i 94 (232)
T PRK04169 74 ----SPGADAYLFPSVLNSRNPYWI 94 (232)
T ss_pred ----CcCCCEEEEEEEecCCCcchH
Confidence 122567888887766665554
No 203
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=21.69 E-value=1e+03 Score=25.71 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhcc--CcccccchhhhHHHHHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRL--HDLSLHTFNSLIWHNIALAGLAALVKFGA 338 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~--d~~~l~~~~~~~~~~~~~~~~~~~~K~~~ 338 (746)
++--.+|+++.|++..+.. .+.+..-++++.+++ +-+|..-+|+.. .+.++.+. .| ..+.--++.-.+.-.++
T Consensus 179 sv~LLlGgliIG~~~g~~g--~~~i~pf~~~lF~G~-L~lFLLeMGl~A~~rL~~l~~~-g~-~li~Fgi~~Pli~a~ig 253 (327)
T PF05982_consen 179 SVVLLLGGLIIGFLAGPEG--VESIKPFFVDLFKGV-LCLFLLEMGLVAARRLRDLRKV-GW-FLIAFGILMPLINALIG 253 (327)
T ss_pred hHHHHHHHHHHhheeCccc--hhhccchhhccHHHH-HHHHHHHhhHHHHHhhHHHHhh-hH-HHHHHHHHHHHHHHHHH
Confidence 6788999999999887542 112222223333332 335656667665 24455443 44 22222222333334444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 047826 339 CALLLLYWKMHRNDAMALALIMN 361 (746)
Q Consensus 339 ~~~~~~~~~~~~~~~~~lg~~m~ 361 (746)
..+ +++.+++.-+...++.+..
T Consensus 254 ~~l-g~~~gls~Gg~~llavLaA 275 (327)
T PF05982_consen 254 IGL-GWLLGLSPGGAVLLAVLAA 275 (327)
T ss_pred HHH-HHHhCCCCccHHHHHHHHh
Confidence 333 3666777777777776443
No 204
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.59 E-value=5.4e+02 Score=27.99 Aligned_cols=129 Identities=15% Similarity=0.054 Sum_probs=68.5
Q ss_pred CCcccccchhhHHHHHHHhccCCCceEEEecCCCCCCCccccCCCCcCCcceEEEEeccCcChHHHHHHHHHhhhCCCeE
Q 047826 553 DGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKRPVTHTDSSSADSLSNVAMLFIGGNDDREALTFAKRMVRDNKVR 632 (746)
Q Consensus 553 dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ 632 (746)
.|.++.+-+....+.+.|-+..+.++-|-+ |... .+ ...||.+-.|++++++++.+...+.
T Consensus 184 GGslenR~r~~~eiv~~ir~~vg~~~~v~i-Rl~~-----------~~-------~~~~G~~~~e~~~~~~~l~~~G~vd 244 (343)
T cd04734 184 GGSLENRMRFLLEVLAAVRAAVGPDFIVGI-RISG-----------DE-------DTEGGLSPDEALEIAARLAAEGLID 244 (343)
T ss_pred CCCHHHHhHHHHHHHHHHHHHcCCCCeEEE-Eeeh-----------hh-------ccCCCCCHHHHHHHHHHHHhcCCCC
Confidence 455666656677888888887766543322 3310 01 1247888899999999998764322
Q ss_pred -EEEEEeeecCC----CC--CCchhhhhHHHHHHhcccC-C-CeEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCC
Q 047826 633 -LTVVHFIAESD----DG--DVDWETILDSEVLRGVKNS-E-YIRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLE 703 (746)
Q Consensus 633 -ltv~~~~~~~~----~~--~~~~~~~~d~~~i~~~~~~-~-~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~ 703 (746)
++|-.=..... .. .....+....++.+.+++. + .+..+-. +.+.++..+.+++- ..|++.+||.--.+
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~-i~~~~~~~~~l~~~--~~D~V~~gR~~lad 321 (343)
T cd04734 245 YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGR-IRDPAEAEQALAAG--HADMVGMTRAHIAD 321 (343)
T ss_pred EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCC-CCCHHHHHHHHHcC--CCCeeeecHHhHhC
Confidence 33311000000 00 0001111123445555542 2 4444432 34556677777543 69999999985433
No 205
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.51 E-value=2.4e+02 Score=23.09 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047826 224 LCVYILTFIVIVMVVVRPAMLLIARMTPE 252 (746)
Q Consensus 224 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~ 252 (746)
.+++.++.++..+|+.|+.+....+.+|.
T Consensus 10 ivl~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 10 IVLALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34444555556678888888877777764
No 206
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=21.45 E-value=2.4e+02 Score=26.95 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=45.9
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCCCeEEEEEEecChhHHHHH
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSEYIRYVKHVVKDGAETVKI 683 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~v~y~e~~v~~g~~~~~~ 683 (746)
++++.+.||.|.--++.++.+. +.++..+++...... ..+.+..+.+.+++. ...|... ++. .....
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~g---~~~~~~~--~~~-~~~~~ 67 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQRH---AKEEEAAKLIAEKLG---PSTYVPA--RNL-IFLSI 67 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCCC---hhHHHHHHHHHHHHC---CCEEEeC--cCH-HHHHH
Confidence 4789999999999998888763 345666776533211 111122223333332 1222111 111 12233
Q ss_pred HHhh--ccCCcEEEEcccCCC
Q 047826 684 VHSI--VSEFELIIVGRRYNL 702 (746)
Q Consensus 684 i~~~--~~~~DLiiVG~~~~~ 702 (746)
+.+. ..++|-++.|.+.+.
T Consensus 68 l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 68 AAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HHHHHHHCCCCEEEEeeccCc
Confidence 3332 237899999988753
No 207
>PLN00200 argininosuccinate synthase; Provisional
Probab=21.31 E-value=1.9e+02 Score=32.38 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=28.9
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecC
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAES 642 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~ 642 (746)
.++|++.|.||-|..-++..+++ +.+.+++-+++....
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~Gq 42 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVGQ 42 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECCC
Confidence 35899999999999888877765 346677777776553
No 208
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=20.76 E-value=8.9e+02 Score=24.55 Aligned_cols=74 Identities=7% Similarity=0.038 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcccChHHHHhchhhHHHHHHHHHHHHHHhhhcceeeec-CChhHHHHHHHHHhhccHHHHHHHHhhcc
Q 047826 104 GIAFFIFQSGVKMDISMVAKVGRKAWYIGILSVIAPLVALIPGSMVPS-GGGPTGLFITPLYYMTAYPVIFCLLTHLK 180 (746)
Q Consensus 104 gl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~l~~~~~~~~~-~g~~~~l~ig~~ls~Ts~~vv~~il~el~ 180 (746)
|-.-.-+-.-+-=+.+.+|++++..+.--..|.++.++. +..+++ +|-...+....+-=...+|+...+-+++|
T Consensus 56 gPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~---~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi~is~~iG 130 (215)
T PF04172_consen 56 GPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFS---AVLLARLLGLSPEIILSLAPKSVTTPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCcCHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 333344444555567888888888766655666655555 444454 55222233332222223366666655554
No 209
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=20.76 E-value=1.1e+02 Score=32.00 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCCc-----ccccccchhhHHHHHHHHhhcC
Q 047826 237 VVVRPAMLLIARMTPEGK-----EVSRTGFEFTVLGLYILGLAVP 276 (746)
Q Consensus 237 ~v~r~~~~~~~~~~~~~~-----~~~~~~G~~~~lgafiaGl~i~ 276 (746)
+..-|.++++.+. +|+. ...+.|..|+.+|+|+.|+.++
T Consensus 34 ~~m~P~lkklY~~-~e~~~~al~rh~~fFNT~p~~~~~I~Gi~~a 77 (264)
T PF03613_consen 34 YSMLPALKKLYKD-KEELKEALKRHMEFFNTEPFLGPFILGIVLA 77 (264)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHCCCChhhhHHHHHHHH
Confidence 3345666665544 3331 1235689999999999999987
No 210
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=20.67 E-value=9.2e+02 Score=28.78 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccchhhHHHHHHHHhhcCC
Q 047826 223 QLCVYILTFIVIVMVVVRPAMLLIARMTPEGKEVSRTGFEFTVLGLYILGLAVPH 277 (746)
Q Consensus 223 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~G~~~~lgafiaGl~i~~ 277 (746)
..++..++.+.+.++++.|...|+..-.... +...++.+..+++++.|.++.-
T Consensus 417 ~Pllt~li~~~l~~~viGp~~~~i~~~l~~~--l~~l~~~~~~l~g~iiG~mv~~ 469 (631)
T PRK09765 417 YPVLGTLGAGSLMLFVVGEPVAWINNSLTAW--LNGLSGSNALLLGAILGFMCSF 469 (631)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHH
Confidence 3455555566667777778777776653322 3344567777888888866543
No 211
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.57 E-value=1.3e+03 Score=26.90 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHhhHHHHHHHHhhccCcccccchhhhHH--HHHHHHHHHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHHhHHHHH
Q 047826 294 SGFFLPIFVTTSAMRLHDLSLHTFNSLIW--HNIALAGLAALVKFGACALLLLYW----KMHRNDAMALALIMNIKGIVE 367 (746)
Q Consensus 294 ~~~f~PiFF~~~G~~~d~~~l~~~~~~~~--~~~~~~~~~~~~K~~~~~~~~~~~----~~~~~~~~~lg~~m~~kG~v~ 367 (746)
...+.-++|++.|+.-.-+. + . +. .+++.++.+ +.+++.++|++ |..|+....+...+-|--.+.
T Consensus 342 ~M~~vti~fA~lGflSPs~R---G-s-LmT~~~~l~v~~G----~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf~ 412 (628)
T KOG1278|consen 342 GMILVTIFFACLGFLSPSSR---G-S-LMTAMVLLFVFMG----FVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVFA 412 (628)
T ss_pred HHHHHHHHHHHhccCCcccc---c-c-HHHHHHHHHHHHH----HhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHHH
Confidence 35667789999998765321 1 1 11 123333333 44555556655 455555544444455544444
Q ss_pred HHH-HHhh----hcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhcCccccccccccccccc
Q 047826 368 MAF-YTFA----SDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLYDPSRKYAGYQIKKLVD 423 (746)
Q Consensus 368 l~~-~~~~----~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~~p~~~~~~~~~r~i~~ 423 (746)
+.+ +|.. .+.|.+. |+.++....+=-.++-|+.-.- .|.+++++.+||
T Consensus 413 ~~f~lN~~lW~~~SSgAvP---F~T~~~ll~LwF~isVPLsf~G-----~y~g~kk~~~e~ 465 (628)
T KOG1278|consen 413 IFFVLNFFLWGKHSSGAVP---FSTMVALLFLWFGISVPLSFVG-----GYFGFKKPAIEH 465 (628)
T ss_pred HHHHHHHHhhcCCCCCccc---HHHHHHHHHHHHHhhhhHHHhh-----HHhhccCCCCCC
Confidence 332 2222 2344443 5555555555555666665432 245555555554
No 212
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.40 E-value=6.2e+02 Score=27.90 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 047826 261 FEFTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTFNSLIWHNIALAGLAALVKFGACA 340 (746)
Q Consensus 261 G~~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~K~~~~~ 340 (746)
.-.+.+|.+++|-.+.+.. .-+++.+-.+.-......-+.-..+|.+.+-+.+.+..+. .++++-++++..--.+..
T Consensus 282 ~a~PLiGmlmfGNllrEsG-Vv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~~~tl--~Il~LGlvAF~~~TagGV 358 (433)
T PRK15475 282 DAAPLLGMFCFGNLMRESG-VVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTL--GILLLGVIAFGIGTAAGV 358 (433)
T ss_pred cHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH--HHHHHHHHHHHHhhhHHH
Confidence 5677888888888887763 2333333333322233333334577888876665544341 233333344433333444
Q ss_pred HHHH
Q 047826 341 LLLL 344 (746)
Q Consensus 341 ~~~~ 344 (746)
+.++
T Consensus 359 L~aK 362 (433)
T PRK15475 359 LMAK 362 (433)
T ss_pred HHHH
Confidence 4443
No 213
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=20.24 E-value=2.4e+02 Score=26.02 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCcccccccchhhHHHHHHHHhhcC
Q 047826 229 LTFIVIVMVVVRPAMLLIARMT-PEGKEVSRTGFEFTVLGLYILGLAVP 276 (746)
Q Consensus 229 ~~~~~~~~~v~r~~~~~~~~~~-~~~~~~~~~~G~~~~lgafiaGl~i~ 276 (746)
++.....+.+.|..+....++. +..-|.. .=.--++|+|+.|++..
T Consensus 7 V~~Gg~~Ga~~Ry~l~~~~~~~~~~~fP~~--Tl~vN~~GsfllG~~~~ 53 (128)
T PRK14212 7 LAAGGALGAVSRYGLNNLTVKLLGDSFPYG--TLIVNCLGCFVLGFLMQ 53 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCchH--HHHHHHHHHHHHHHHHH
Confidence 3344556667787776555442 2221211 01345779999998753
Done!