Query 047826
Match_columns 746
No_of_seqs 238 out of 1843
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 05:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 3.1E-23 1.1E-27 223.1 13.3 291 96-408 59-385 (388)
2 3mt0_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 180.7 19.7 253 430-743 8-277 (290)
3 3loq_A Universal stress protei 99.7 2.9E-18 1E-22 181.3 11.8 268 430-744 23-292 (294)
4 3olq_A Universal stress protei 99.7 1E-17 3.5E-22 179.0 14.9 274 430-743 8-306 (319)
5 3cis_A Uncharacterized protein 99.7 1.6E-17 5.4E-22 177.0 14.0 274 429-743 19-307 (309)
6 3ab8_A Putative uncharacterize 99.7 1.1E-16 3.6E-21 166.8 13.5 256 431-741 2-268 (268)
7 3fdx_A Putative filament prote 99.1 1.3E-10 4.3E-15 108.3 9.6 138 430-581 2-142 (143)
8 1mjh_A Protein (ATP-binding do 99.1 4.7E-10 1.6E-14 106.9 10.5 140 430-582 6-158 (162)
9 3s3t_A Nucleotide-binding prot 99.1 1.2E-10 4E-15 109.0 5.8 138 430-581 6-145 (146)
10 3dlo_A Universal stress protei 99.0 3E-10 1E-14 108.0 8.1 130 429-581 24-154 (155)
11 3hgm_A Universal stress protei 99.0 1.4E-10 4.7E-15 108.5 5.5 138 430-580 3-146 (147)
12 3tnj_A Universal stress protei 99.0 2.3E-10 8E-15 107.5 6.3 141 430-584 7-148 (150)
13 2dum_A Hypothetical protein PH 99.0 6.5E-10 2.2E-14 106.9 9.6 143 430-585 6-158 (170)
14 1tq8_A Hypothetical protein RV 99.0 7.9E-10 2.7E-14 105.9 8.3 139 429-583 17-158 (163)
15 2z08_A Universal stress protei 98.9 8.5E-10 2.9E-14 102.1 6.7 133 430-581 3-136 (137)
16 2gm3_A Unknown protein; AT3G01 98.9 2.3E-09 8E-14 103.6 9.9 145 430-585 6-165 (175)
17 3fg9_A Protein of universal st 98.9 5.7E-10 1.9E-14 105.7 5.3 137 429-581 15-155 (156)
18 1jmv_A USPA, universal stress 98.8 4.4E-09 1.5E-13 97.5 8.1 135 430-584 3-139 (141)
19 3idf_A USP-like protein; unive 98.8 3.1E-09 1.1E-13 98.2 4.7 133 431-581 3-137 (138)
20 1q77_A Hypothetical protein AQ 98.6 7.2E-08 2.5E-12 89.0 7.7 128 430-581 5-137 (138)
21 3mt0_A Uncharacterized protein 98.6 3.5E-08 1.2E-12 103.5 5.7 136 429-584 134-277 (290)
22 3s3t_A Nucleotide-binding prot 98.5 5.1E-07 1.7E-11 83.9 11.9 127 600-741 3-146 (146)
23 3olq_A Universal stress protei 98.5 1.2E-07 4.3E-12 100.4 6.6 144 429-585 156-307 (319)
24 3hgm_A Universal stress protei 98.5 2.8E-07 9.7E-12 85.7 8.1 124 602-740 2-147 (147)
25 3loq_A Universal stress protei 98.5 2.4E-07 8.3E-12 97.1 8.3 122 428-583 169-290 (294)
26 3idf_A USP-like protein; unive 98.4 1.1E-06 3.8E-11 80.8 11.3 123 603-741 2-138 (138)
27 2dum_A Hypothetical protein PH 98.4 8.3E-07 2.8E-11 84.9 10.5 127 602-743 5-157 (170)
28 1mjh_A Protein (ATP-binding do 98.4 1.3E-06 4.3E-11 82.8 11.4 127 602-743 5-160 (162)
29 3dlo_A Universal stress protei 98.4 1.1E-06 3.7E-11 83.1 10.1 123 602-741 24-155 (155)
30 1tq8_A Hypothetical protein RV 98.4 8.1E-07 2.8E-11 84.7 9.2 127 601-743 16-159 (163)
31 3fdx_A Putative filament prote 98.4 1.4E-06 4.9E-11 80.5 10.2 123 603-741 2-143 (143)
32 3tnj_A Universal stress protei 98.3 1.3E-06 4.5E-11 81.5 9.3 126 602-743 6-148 (150)
33 2z08_A Universal stress protei 98.3 1.3E-06 4.6E-11 80.2 9.1 125 602-741 2-137 (137)
34 3fg9_A Protein of universal st 98.3 1.3E-06 4.6E-11 82.2 7.4 125 601-741 14-156 (156)
35 1jmv_A USPA, universal stress 98.2 4.7E-06 1.6E-10 76.8 10.7 124 602-743 2-139 (141)
36 3cis_A Uncharacterized protein 98.2 2.3E-06 7.9E-11 90.3 8.3 134 429-582 171-305 (309)
37 2gm3_A Unknown protein; AT3G01 98.1 1.3E-05 4.4E-10 77.0 10.1 128 601-743 4-164 (175)
38 1q77_A Hypothetical protein AQ 97.9 2.2E-05 7.6E-10 72.0 7.5 39 602-640 4-43 (138)
39 3ab8_A Putative uncharacterize 97.8 1.7E-05 5.9E-10 81.6 6.3 113 430-581 155-267 (268)
40 3zux_A Transporter, ASBTNM; tr 97.7 0.0069 2.4E-07 64.3 24.5 75 330-407 236-311 (332)
41 3g40_A Na-K-CL cotransporter; 95.9 0.072 2.5E-06 54.3 12.6 221 427-702 18-256 (294)
42 1zun_A Sulfate adenylyltransfe 63.9 6.6 0.00022 41.1 5.1 55 603-664 47-101 (325)
43 3zux_A Transporter, ASBTNM; tr 62.7 87 0.003 32.4 13.6 80 263-351 22-102 (332)
44 1ni5_A Putative cell cycle pro 57.0 25 0.00087 38.1 8.5 95 602-701 13-119 (433)
45 2wsi_A FAD synthetase; transfe 55.0 24 0.00083 36.3 7.5 93 603-702 54-169 (306)
46 1sur_A PAPS reductase; assimil 53.4 35 0.0012 32.8 8.1 35 603-641 45-79 (215)
47 3a2k_A TRNA(Ile)-lysidine synt 52.4 38 0.0013 37.0 9.0 59 602-664 18-76 (464)
48 1iv0_A Hypothetical protein; r 45.0 38 0.0013 28.5 5.8 57 524-584 37-93 (98)
49 2oq2_A Phosphoadenosine phosph 44.3 15 0.00052 36.8 3.9 38 604-642 43-80 (261)
50 1efp_B ETF, protein (electron 40.8 34 0.0012 34.2 5.7 97 607-713 31-141 (252)
51 1o97_C Electron transferring f 40.3 23 0.00077 35.7 4.4 33 607-639 31-65 (264)
52 1efv_B Electron transfer flavo 37.2 37 0.0013 34.0 5.3 97 607-713 34-144 (255)
53 1wy5_A TILS, hypothetical UPF0 36.8 27 0.00094 36.0 4.5 40 602-641 24-64 (317)
54 3fwk_A FMN adenylyltransferase 36.0 67 0.0023 33.0 7.1 92 603-701 59-171 (308)
55 2l0e_A Sodium/hydrogen exchang 32.1 13 0.00045 24.7 0.7 26 156-181 5-30 (33)
56 1nu0_A Hypothetical protein YQ 30.9 77 0.0026 28.4 5.8 58 524-584 39-96 (138)
57 2o8v_A Phosphoadenosine phosph 28.8 1.1E+02 0.0038 30.1 7.3 35 603-641 46-80 (252)
58 3k32_A Uncharacterized protein 27.7 3.8E+02 0.013 25.1 11.1 36 603-642 7-42 (203)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.89 E-value=3.1e-23 Score=223.14 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccChHHH----Hhchh--hHHHHHHHHHHHHHHhhhcceeeecCChhHHHHHHHHHhhccH
Q 047826 96 LIGSMGNIGIAFFIFQSGVKMDISMV----AKVGR--KAWYIGILSVIAPLVALIPGSMVPSGGGPTGLFITPLYYMTAY 169 (746)
Q Consensus 96 ~l~~la~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~~p~~l~~~~~~~~~~g~~~~l~ig~~ls~Ts~ 169 (746)
....+.+-.+.+|||.+|+|+|.+.+ ++.+| .+...++.|+++|+++ +.++.+ +...+.....+.+.|+.
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i---y~~~~~-~~~~~~~gw~ip~ATdI 134 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL---YLAFNY-ADPITREGWAIPAATDI 134 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH---HGGGCC-SSTTHHHHTSSSSCCCH
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH---HHHHhc-CChhhhhhhHHHHHHHH
Confidence 45566777888999999999999877 55555 3788899999999999 644332 33445566666778999
Q ss_pred HHHHHHHhhccc-cCCchhHHHHHHHhHHhHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047826 170 PVIFCLLTHLKI-LNSELGRLAQSSAIVADFLSYATILFLTLSQVAYSSPPKAIQLCVYILTFIVIVMVVVRPAMLLIAR 248 (746)
Q Consensus 170 ~vv~~il~el~l-~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~ 248 (746)
+....++..++. .++..++.+++.|++||+.+|++++++.+ ++.+ ..+... .+++.+...++ +
T Consensus 135 Afal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~---~~~l~~-~~~~~~~~~~l---------~ 198 (388)
T 1zcd_A 135 AFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS---MASLGV-AAVAIAVLAVL---------N 198 (388)
T ss_dssp HHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC---HHHHHH-HHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc---HHHHHH-HHHHHHHHHHH---------H
Confidence 999999999865 55567799999999999999999998863 2222 222221 22222222222 2
Q ss_pred HcCCCcc------------cccccchhhHHHHHHHHhhcCCCC----chhhHHHHHhhHhHHHhhHHHH-HHHHhhccCc
Q 047826 249 MTPEGKE------------VSRTGFEFTVLGLYILGLAVPHGP----PLGSALVNKFDTMISGFFLPIF-VTTSAMRLHD 311 (746)
Q Consensus 249 ~~~~~~~------------~~~~~G~~~~lgafiaGl~i~~~~----~~~~~l~~kl~~~~~~~f~PiF-F~~~G~~~d~ 311 (746)
|....+. ..+..|+|+++|+|++|+++|..+ +..+++++++++++..+++|+| |+..|.++|.
T Consensus 199 r~~v~~~~~y~~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~ 278 (388)
T 1zcd_A 199 LCGARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQG 278 (388)
T ss_dssp HTTCCCTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSS
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeecc
Confidence 2111111 012339999999999999999853 3568899999999999999999 9999999998
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhcCCC--
Q 047826 312 LSLHTFNSLIWHNIALAGLAALVKFGACALLLLYW----------KMHRNDAMALALIMNIKGIVEMAFYTFASDGRY-- 379 (746)
Q Consensus 312 ~~l~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lg~~m~~kG~v~l~~~~~~~~~~~-- 379 (746)
..+..... .....+++..+++|++|++..++.. |++|+|...+|.+++.++++++++++++++.+.
T Consensus 279 ~~~~~l~~--~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf~~~~~~ 356 (388)
T 1zcd_A 279 VTLDGLTS--ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPE 356 (388)
T ss_dssp SCCCTHHH--HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCS
T ss_pred cchhhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhccCCchh
Confidence 53221111 1122444455889999966666665 899999999999999999999999999998876
Q ss_pred CChhhHHHHHHHHHHHHhhhHHHHHhhcC
Q 047826 380 VSPNMFRFMLGVVIVTGSVVPILVRKLYD 408 (746)
Q Consensus 380 i~~~~~~~lv~~~lltt~i~~~l~~~~~~ 408 (746)
+.++.+..+++++++++++++.+.|+.++
T Consensus 357 ~~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 357 LINWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp SHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677999999999999999988876653
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.78 E-value=3.2e-18 Score=180.65 Aligned_cols=253 Identities=12% Similarity=0.057 Sum_probs=173.0
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.+++...+++.+..++. ....+++++|+++ + .+ .....++..+.+ . .
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~-~---------~~-------~~~~l~~~~~~~---~-~-- 62 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAG--VTQSHLHLLVCEK-R---------RD-------HSAALNDLAQEL---R-E-- 62 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHH--HHCCEEEEEEECS-S---------SC-------CHHHHHHHHHHH---H-H--
T ss_pred ceEEEEeCCCccchHHHHHHHHHHH--hcCCeEEEEEeeC-c---------HH-------HHHHHHHHHHHH---h-h--
Confidence 4799999999999999999999883 4457899999987 2 00 011122222222 2 2
Q ss_pred cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCCC
Q 047826 510 GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLKR 589 (746)
Q Consensus 510 ~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~~ 589 (746)
.++.++...... .+..+.|++.|+++++|+||||.|++...++.+ +|++.+++++++||||.++.... .
T Consensus 63 ~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~~-~-- 131 (290)
T 3mt0_A 63 EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTAR-P-- 131 (290)
T ss_dssp TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCCS-C--
T ss_pred CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCCC-C--
Confidence 346666655433 679999999999999999999999886555443 88999999999999998874222 1
Q ss_pred CccccCCCCcCCcceEEEEeccCcC-------hHHHHHHHHHhhhCCCeEEEEEEeeecCCCCC--C-----chhhhhHH
Q 047826 590 PVTHTDSSSADSLSNVAMLFIGGND-------DREALTFAKRMVRDNKVRLTVVHFIAESDDGD--V-----DWETILDS 655 (746)
Q Consensus 590 ~~~~~~~~~~~~~~~I~~~f~gg~d-------dreAl~~a~rma~~~~v~ltv~~~~~~~~~~~--~-----~~~~~~d~ 655 (746)
. ..++|++++.|.++ .+.|+++|.++|+..+++++++|+.++..... . +..++..+
T Consensus 132 ---------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T 3mt0_A 132 ---------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYR 201 (290)
T ss_dssp ---------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHH
T ss_pred ---------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHH
Confidence 1 26799999999998 79999999999999999999999986532210 0 11111122
Q ss_pred HHHHhcccC-C--CeEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCC
Q 047826 656 EVLRGVKNS-E--YIRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLG 732 (746)
Q Consensus 656 ~~i~~~~~~-~--~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~ 732 (746)
+.++++..+ + .+.+.-..-+-++++.+++++. ++||+++|+++. .++.+| -+|...+-+..+
T Consensus 202 ~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~--~~dLiVmG~~g~------~~~~~~----~~Gsv~~~vl~~--- 266 (290)
T 3mt0_A 202 EACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKL--DAVVTVIGTVAR------TGLSGA----LIGNTAEVVLDT--- 266 (290)
T ss_dssp HHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHH--TCSEEEEECCSS------CCGGGC----CSCHHHHHHHTT---
T ss_pred HHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhc--CCCEEEECCCCC------cCCcce----ecchHHHHHHhc---
Confidence 333333221 1 1111111111244566666665 799999999963 244444 589999999987
Q ss_pred CcccEEEEEEe
Q 047826 733 GKCSVLVMQQQ 743 (746)
Q Consensus 733 ~~~svLvvqq~ 743 (746)
++++||||..+
T Consensus 267 ~~~pVLvv~~~ 277 (290)
T 3mt0_A 267 LESDVLVLKPD 277 (290)
T ss_dssp CSSEEEEECCH
T ss_pred CCCCEEEECCC
Confidence 88999999754
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.75 E-value=2.9e-18 Score=181.30 Aligned_cols=268 Identities=13% Similarity=0.051 Sum_probs=176.7
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.+++...+++.+..++ +....+++++|+++.+...... ......+.........++.++.+.+..+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFK--KVGVEEIGVLFVINLTKLSTVS-GGIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHH--HTTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 489999999999999999999888 4456899999999865422110 00000000001112334444444444333
Q ss_pred cceEEEE-EEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCC
Q 047826 510 GAASINA-FTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLK 588 (746)
Q Consensus 510 ~~v~v~~-~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~ 588 (746)
.++.++. .+. ...+..+.| .++++++|+||||.|++.+..+ ..+|++.++|++++||||.++.+... +
T Consensus 98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlvv~~~~~-~ 166 (294)
T 3loq_A 98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYIFKHDMV-V 166 (294)
T ss_dssp TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEEECCCTT-T
T ss_pred cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEEecCccc-c
Confidence 3566665 222 126888999 9999999999999998754332 24789999999999999988754321 1
Q ss_pred CCccccCCCCcCCcceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccCC-Ce
Q 047826 589 RPVTHTDSSSADSLSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNSE-YI 667 (746)
Q Consensus 589 ~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~-~v 667 (746)
....++|++++.|.++++.|+++|.++++..+++++++++.++.. .++..+++.+.+...+ .+
T Consensus 167 ----------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~~~~~ 230 (294)
T 3loq_A 167 ----------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAEGIEV 230 (294)
T ss_dssp ----------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHTTCCE
T ss_pred ----------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHcCCcE
Confidence 123679999999999999999999999999999999999986543 1222333333333332 33
Q ss_pred EEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEEEee
Q 047826 668 RYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQQQR 744 (746)
Q Consensus 668 ~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvqq~~ 744 (746)
.+.-..-+-.+++.+++++. ++||+++|+++. +++.+| -+|...+-+..+ ++++||||.+..
T Consensus 231 ~~~~~~g~~~~~I~~~a~~~--~~dLlV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pvLvv~~~~ 292 (294)
T 3loq_A 231 HVHIESGTPHKAILAKREEI--NATTIFMGSRGA------GSVMTM----ILGSTSESVIRR---SPVPVFVCKRGD 292 (294)
T ss_dssp EEEEECSCHHHHHHHHHHHT--TCSEEEEECCCC------SCHHHH----HHHCHHHHHHHH---CSSCEEEECSCT
T ss_pred EEEEecCCHHHHHHHHHHhc--CcCEEEEeCCCC------CCccce----eeCcHHHHHHhc---CCCCEEEECCCC
Confidence 33211111133444444443 799999999963 233333 478888888886 889999998764
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.74 E-value=1e-17 Score=179.04 Aligned_cols=274 Identities=9% Similarity=0.040 Sum_probs=174.4
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccc-cccccccchHHHHHHHHhcccc
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNK-NIYTYCYSENVILSFKKFGGLH 508 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~-~~~~~~~~~~i~~~f~~~~~~~ 508 (746)
-|||+|++.+++...+++.+..++ +.....++++|+++-.....+.......... ........++.++.+.+....
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 84 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIV--QRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE- 84 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHH--HHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEECCCcccHHHHHHHHHHH--HHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 479999999999999999998888 4445799999998632111000000000000 000001112223222222211
Q ss_pred CcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecCCCCC
Q 047826 509 WGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDHGNLK 588 (746)
Q Consensus 509 ~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr~~~~ 588 (746)
.+++++..+... .+..+.|++.|+++++|+||||+|++.+.++.+ +|++.++|++++||||.++.++..
T Consensus 85 -~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~~-- 153 (319)
T 3olq_A 85 -AGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKDKEW-- 153 (319)
T ss_dssp -TTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEESSCC--
T ss_pred -cCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEEecCccc--
Confidence 456766655433 789999999999999999999999876655543 789999999999999988764431
Q ss_pred CCccccCCCCcCCcceEEEEeccCcC-------hHHHHHHHHHhhhCC--CeEEEEEEeeecCCCC-------CC--chh
Q 047826 589 RPVTHTDSSSADSLSNVAMLFIGGND-------DREALTFAKRMVRDN--KVRLTVVHFIAESDDG-------DV--DWE 650 (746)
Q Consensus 589 ~~~~~~~~~~~~~~~~I~~~f~gg~d-------dreAl~~a~rma~~~--~v~ltv~~~~~~~~~~-------~~--~~~ 650 (746)
...++|++++.|.++ .+.|+++|.++|+.. +++++++|+.++.... .+ +..
T Consensus 154 -----------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T 3olq_A 154 -----------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYN 222 (319)
T ss_dssp -----------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHH
T ss_pred -----------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHH
Confidence 126799999999985 499999999999988 9999999998653221 00 000
Q ss_pred ---hhhHHHHHHhcccC-C--CeEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhh
Q 047826 651 ---TILDSEVLRGVKNS-E--YIRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGD 724 (746)
Q Consensus 651 ---~~~d~~~i~~~~~~-~--~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd 724 (746)
++..++.++++..+ . .+.+.-..-+-.+.+.+++++. ++||+++|+++. .++.+| -+|...+
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~--~~dLiV~G~~g~------~~~~~~----~~Gsv~~ 290 (319)
T 3olq_A 223 NALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEEL--NAGIVVLGILGR------TGLSAA----FLGNTAE 290 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHT--TEEEEEEECCSC------CSTHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHh--CCCEEEEeccCc------cCCccc----cccHHHH
Confidence 11112333333322 1 1111111111144456666654 799999999863 233333 5888888
Q ss_pred hhhcCCCCCcccEEEEEEe
Q 047826 725 LLASKDLGGKCSVLVMQQQ 743 (746)
Q Consensus 725 ~las~~~~~~~svLvvqq~ 743 (746)
-+... ++++||||..+
T Consensus 291 ~vl~~---~~~pVLvv~~~ 306 (319)
T 3olq_A 291 QLIDH---IKCDLLAIKPD 306 (319)
T ss_dssp HHHTT---CCSEEEEECCT
T ss_pred HHHhh---CCCCEEEECCC
Confidence 88887 88999999754
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.73 E-value=1.6e-17 Score=177.02 Aligned_cols=274 Identities=16% Similarity=0.155 Sum_probs=175.5
Q ss_pred cceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCc-ce-eeecccccccccccccchHHHHHHHHhcc
Q 047826 429 ELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQAT-SI-FVSHQSKNKNIYTYCYSENVILSFKKFGG 506 (746)
Q Consensus 429 e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~-~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 506 (746)
.-|||+|++.+++...+++.+..++. ....+++++|+++ +.... +. ....+. ........++.++.+.+..+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAE--LRKIPLTLVHAVS-PEVATWLEVPLPPGV---LRWQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHH--HHTCCEEEEEECC-CCCCCTTCCCCCHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHH--hcCCcEEEEEEec-CcccccccCCCCchh---hHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999888873 3446899999987 32111 00 000000 00001122333333332222
Q ss_pred cc---CcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEec
Q 047826 507 LH---WGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILID 583 (746)
Q Consensus 507 ~~---~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvd 583 (746)
.. ..++.++..+. ..+..+.|++.|+ ++|+||||.|++.+..+.+ +|++.++|++++||||.++..
T Consensus 93 ~~~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~ 161 (309)
T 3cis_A 93 QASLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCPVVIIHD 161 (309)
T ss_dssp HHCSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSCEEEECT
T ss_pred HhcccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCCEEEEcC
Confidence 11 01466666544 4789999999996 8999999999876655443 889999999999999988754
Q ss_pred CCCCCCCccccCCCCcCCcceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC---CC--chhhh----hH
Q 047826 584 HGNLKRPVTHTDSSSADSLSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDG---DV--DWETI----LD 654 (746)
Q Consensus 584 r~~~~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~---~~--~~~~~----~d 654 (746)
+..... ....++|++++.|.+.++.|+++|.++|+..+++++++++.++.... .. +...+ .-
T Consensus 162 ~~~~~~---------~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l 232 (309)
T 3cis_A 162 EDSVMP---------HPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVL 232 (309)
T ss_dssp TCCCSC---------SSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHH
T ss_pred CcccCC---------CCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHH
Confidence 432100 12257899999999999999999999999999999999998653221 00 11111 12
Q ss_pred HHHHHhcccC-CCeEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCC
Q 047826 655 SEVLRGVKNS-EYIRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGG 733 (746)
Q Consensus 655 ~~~i~~~~~~-~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~ 733 (746)
+++++++... ..+.+... +..| +..+.|.+.++++||++||+++. +++.+| -+|-..+-+..+ +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~~g-~~~~~I~~~a~~adliV~G~~~~------~~~~~~----l~Gsv~~~vl~~---~ 297 (309)
T 3cis_A 233 AERLAGWQERYPNVAITRV-VVRD-QPARQLVQRSEEAQLVVVGSRGR------GGYAGM----LVGSVGETVAQL---A 297 (309)
T ss_dssp HHHHTTHHHHCTTSCEEEE-EESS-CHHHHHHHHHTTCSEEEEESSCS------SCCTTC----SSCHHHHHHHHH---C
T ss_pred HHHHHHHHhhCCCCcEEEE-EEcC-CHHHHHHHhhCCCCEEEECCCCC------CCcccc----ccCcHHHHHHhc---C
Confidence 2333333221 12222222 3344 34455555555899999999963 233333 589899988887 7
Q ss_pred cccEEEEEEe
Q 047826 734 KCSVLVMQQQ 743 (746)
Q Consensus 734 ~~svLvvqq~ 743 (746)
+++||||..+
T Consensus 298 ~~pVlvv~~~ 307 (309)
T 3cis_A 298 RTPVIVARES 307 (309)
T ss_dssp SSCEEEECC-
T ss_pred CCCEEEeCCC
Confidence 8999999754
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.69 E-value=1.1e-16 Score=166.78 Aligned_cols=256 Identities=12% Similarity=0.064 Sum_probs=170.2
Q ss_pred eeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecc-cccc--------cccccccchHHHHHH
Q 047826 431 QIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQ-SKNK--------NIYTYCYSENVILSF 501 (746)
Q Consensus 431 riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~-~~~~--------~~~~~~~~~~i~~~f 501 (746)
|||+|++.+++...+++.+..++. ....+++++|+++.+....+...... ..++ ........++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAY--KLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHH--HHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHH--HhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999988873 34568999999885431100000000 0000 000011223444444
Q ss_pred HHhccccCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCcccc-ccCCcccccchhhHHHHHHHhccCCCceEE
Q 047826 502 KKFGGLHWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTW-YIDGSLESEDQTVRNLNLCVLEKAPCSVGI 580 (746)
Q Consensus 502 ~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~-~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgi 580 (746)
.+..+. .+++++..+. ..+..+.|++. ++++|+||||.|++. +..+.+ +|++.++|++++||||.+
T Consensus 80 ~~~~~~--~g~~~~~~~~---~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLE---EGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHH--TTCCEEEEEE---EECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHHh--CCCCeEEEEe---cCCHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCEEE
Confidence 443332 3456665544 36889999998 889999999999876 555443 789999999999999977
Q ss_pred EecCCCCCCCccccCCCCcCCcceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHh
Q 047826 581 LIDHGNLKRPVTHTDSSSADSLSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRG 660 (746)
Q Consensus 581 lvdr~~~~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~ 660 (746)
+..+.. ..++|++++.|.++.+.|+++|.++++..+++++++|+.++.+ ..++..+++.+.
T Consensus 147 v~~~~~--------------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~~~~l~~~~~~ 207 (268)
T 3ab8_A 147 APGEPV--------------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-----RAEAWALEAEAY 207 (268)
T ss_dssp ECSSCC--------------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-----HHHHHHHHHHHH
T ss_pred ECCCCC--------------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-----HHHHHHHHHHHH
Confidence 643221 2569999999999999999999999999999999999875431 112223333333
Q ss_pred cccCC-CeEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEE
Q 047826 661 VKNSE-YIRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLV 739 (746)
Q Consensus 661 ~~~~~-~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLv 739 (746)
+...+ .+.+ . +.+| +..+.|.+.++++||+++|+ ++.+| -+|...+-+... ++++|||
T Consensus 208 l~~~~~~~~~--~-~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pvlv 266 (268)
T 3ab8_A 208 LRDHGVEASA--L-VLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPVLT 266 (268)
T ss_dssp HHHTTCCEEE--E-EECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCEEE
T ss_pred HHHcCCceEE--E-EeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCEEE
Confidence 33322 3333 2 2234 34555555555569999998 33333 578888888887 8899999
Q ss_pred EE
Q 047826 740 MQ 741 (746)
Q Consensus 740 vq 741 (746)
|.
T Consensus 267 v~ 268 (268)
T 3ab8_A 267 AR 268 (268)
T ss_dssp EC
T ss_pred eC
Confidence 83
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.13 E-value=1.3e-10 Score=108.32 Aligned_cols=138 Identities=19% Similarity=0.095 Sum_probs=93.9
Q ss_pred ceeEEEecCCCC--hhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccc
Q 047826 430 LQIVSCIHVPSN--IISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGL 507 (746)
Q Consensus 430 ~riLv~i~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 507 (746)
-|||+|++.+++ ...+++.+..++ +....+++++|+++.+........... ..........++..+.++++.++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~ 77 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEA--RIDDAEVHFLTVIPSLPYYASLGMAYT--AELPGMDELREGSETQLKEIAKK 77 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHH--HHHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHH--HhcCCeEEEEEEecCCccccccccccc--chhhhHHHHHHHHHHHHHHHHHH
Confidence 379999999999 999999988887 334579999999986542211100000 00011122345566677777665
Q ss_pred cC-cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 508 HW-GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 508 ~~-~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.. ..+.++..+. ..+..+.|++.|+++++|+||||.|+ .+..+. .+|++.++|++++||||.++
T Consensus 78 ~~~~~~~v~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~------~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 78 FSIPEDRMHFHVA---EGSPKDKILALAKSLPADLVIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp SCCCGGGEEEEEE---ESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSC------SSCHHHHHHHHHCSSEEEEE
T ss_pred cCCCCCceEEEEE---ecChHHHHHHHHHHhCCCEEEEeCCC-CCCeee------eeccHHHHHHHhCCCCEEEe
Confidence 43 3455565554 36899999999999999999999995 444443 38999999999999999775
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.06 E-value=4.7e-10 Score=106.91 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=92.9
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccC----CCccee-----e-ecc---cccccccccccchH
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNG----QATSIF-----V-SHQ---SKNKNIYTYCYSEN 496 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~----r~~~~~-----~-~~~---~~~~~~~~~~~~~~ 496 (746)
-|||+|++.+++...+++.+..++ +....+++++|+++... ...+.. . ... ..+.........++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 479999999999999999999998 44567999999988531 100000 0 000 00000000112233
Q ss_pred HHHHHHHhccccCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCC
Q 047826 497 VILSFKKFGGLHWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPC 576 (746)
Q Consensus 497 i~~~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~Apc 576 (746)
.++.+.+..+. .++.++..+. ..+..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~---~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIV---VGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEE---EECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH--cCCceEEEEc---CCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCCC
Confidence 33333332222 3466665544 2689999999999999999999999886655543 89999999999999
Q ss_pred ceEEEe
Q 047826 577 SVGILI 582 (746)
Q Consensus 577 sVgilv 582 (746)
||.|+.
T Consensus 153 pVlvv~ 158 (162)
T 1mjh_A 153 PVLVVK 158 (162)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 998874
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.05 E-value=1.2e-10 Score=108.98 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=94.6
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.+++...+++.+..++ +....+++++|+++.+........... .+.........++.++.+.+..+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-- 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIA--QRHQANLTALYVVDDSAYHTPALDPVL-SELLDAEAAHAKDAMRQRQQFVAT-- 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEECCCCCCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCcccccccccccc-HHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 479999999999999999988887 334578999999986543211100000 000001112234444444443332
Q ss_pred cce-EEEEEEEEcCCCChHHHHHH-HHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 510 GAA-SINAFTAISPPDLMHDDICT-LALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 510 ~~v-~v~~~~~vs~~~~~~~~I~~-~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.++ .++..+. ..+..+.|++ .|++.++|+||||.|++.+..+.+ +|++.++|++++||||.|+
T Consensus 81 ~g~~~~~~~~~---~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 TSAPNLKTEIS---YGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp SSCCCCEEEEE---EECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred cCCcceEEEEe---cCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEEe
Confidence 345 5555544 3589999999 999999999999999887655543 8999999999999999875
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.04 E-value=3e-10 Score=107.96 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=93.1
Q ss_pred cceeEEEecC-CCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccc
Q 047826 429 ELQIVSCIHV-PSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGL 507 (746)
Q Consensus 429 e~riLv~i~~-~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 507 (746)
--|||+|++. ++....+++.+..++. ....+++++|+++.+..... + .....++.++.+.+..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~--~~~a~l~llhV~~~~~~~~~-----~-------~~~~~~~~l~~~~~~~~~ 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEAR--LRGVPVYVVHSLPGGGRTKD-----E-------DIIEAKETLSWAVSIIRK 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHH--HHTCCEEEEEEECCSTTSCH-----H-------HHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEEcCCCcccH-----H-------HHHHHHHHHHHHHHHHHh
Confidence 3579999999 9999999999988874 34468999999885432110 0 011233444444443333
Q ss_pred cCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 508 HWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 508 ~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.++.++..+.+. ..+..+.|++.|++.++|+||||.|++.+..+.+ +|++.++|++++||||.|+
T Consensus 90 --~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 --EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI 154 (155)
T ss_dssp --TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred --cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEe
Confidence 234444433343 4789999999999999999999999886655543 8999999999999999876
No 11
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.04 E-value=1.4e-10 Score=108.54 Aligned_cols=138 Identities=13% Similarity=0.057 Sum_probs=92.8
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCccee--eecccccc-cccccccchHHHHHHHHhcc
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIF--VSHQSKNK-NIYTYCYSENVILSFKKFGG 506 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~--~~~~~~~~-~~~~~~~~~~i~~~f~~~~~ 506 (746)
-|||+|++.+++...+++.+..++. ....+++++|+++.+....... ......+. ........++.++.+.+..+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQ--LTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHH--HHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999888873 3457899999998543110000 00000000 00111233445555554443
Q ss_pred ccCcceEE---EEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEE
Q 047826 507 LHWGAASI---NAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGI 580 (746)
Q Consensus 507 ~~~~~v~v---~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgi 580 (746)
. .++.+ +..+. ..+..+.|++.|++.++|+||||.|++.+..+.+ +|++.++|++++||||.|
T Consensus 81 ~--~g~~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 81 E--LGVPADKVRAFVK---GGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp H--TTCCGGGEEEEEE---ESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEE
T ss_pred h--cCCCccceEEEEe---cCCHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEE
Confidence 3 23333 44433 3689999999999999999999999886655543 799999999999999976
No 12
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.02 E-value=2.3e-10 Score=107.50 Aligned_cols=141 Identities=9% Similarity=0.056 Sum_probs=86.0
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.+++...+++.+..++. ....+++++|+++.........-...............++..+.++++.++..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLAS--QIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998883 34578999999885432100000000000000011122334445555544322
Q ss_pred cceE-EEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecC
Q 047826 510 GAAS-INAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDH 584 (746)
Q Consensus 510 ~~v~-v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr 584 (746)
+. ++..+. ..+..+.|++.|+++++|+||||.|++.+.. . .+|++.++|++++||||.|+..+
T Consensus 85 --~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~------~~Gs~~~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 85 --IDPAHRWLV---WGEPREEIIRIAEQENVDLIVVGSHGRHGLA-L------LLGSTANSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp --CCGGGEEEE---ESCHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEECC
T ss_pred --CCcceEEEe---cCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-e------EecchHHHHHHhCCCCEEEEeCC
Confidence 22 122222 2689999999999999999999999886544 3 37899999999999999887543
No 13
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.02 E-value=6.5e-10 Score=106.92 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=92.3
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcce-eee-------cccccccccccccchHHHHHH
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSI-FVS-------HQSKNKNIYTYCYSENVILSF 501 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~-~~~-------~~~~~~~~~~~~~~~~i~~~f 501 (746)
-|||+|++.+++...+++.+..++ +....+++++|+++........ ... ....+.........++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRN--KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHC--CSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 4456899999998743211000 000 000000000011223333333
Q ss_pred HHhccccCcceEEEE--EEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceE
Q 047826 502 KKFGGLHWGAASINA--FTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVG 579 (746)
Q Consensus 502 ~~~~~~~~~~v~v~~--~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVg 579 (746)
.+..+. .++.++. .+. ..+..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||||.
T Consensus 84 ~~~~~~--~g~~~~~~~~~~---~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 84 AEEVKR--AFRAKNVRTIIR---FGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHH--HTTCSEEEEEEE---EECHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHH--cCCceeeeeEEe---cCChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEE
Confidence 332222 2344444 333 2689999999999999999999999886554443 89999999999999998
Q ss_pred EEecCC
Q 047826 580 ILIDHG 585 (746)
Q Consensus 580 ilvdr~ 585 (746)
|+..+.
T Consensus 153 vv~~~~ 158 (170)
T 2dum_A 153 IIKEVD 158 (170)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 875443
No 14
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.98 E-value=7.9e-10 Score=105.92 Aligned_cols=139 Identities=12% Similarity=0.041 Sum_probs=91.2
Q ss_pred cceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEE--EeeeccCCCcceeeecccccccccccccchHHHHHHHHhcc
Q 047826 429 ELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVL--HLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGG 506 (746)
Q Consensus 429 e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~l--hlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 506 (746)
.-|||+|++.++....+++.+..++. ...+++++ |+++.+....+...... +-........++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILKDE--SYKVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCcccccccccccH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999884 45789999 88775432011000000 0000112233445555444433
Q ss_pred ccCcceE-EEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEec
Q 047826 507 LHWGAAS-INAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILID 583 (746)
Q Consensus 507 ~~~~~v~-v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvd 583 (746)
. .++. ++..+. ..+..+.|++.|++.++|+||||.|++.+..+. .+|++.++|++++||||.|+..
T Consensus 92 ~--~gv~~v~~~v~---~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~------~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 92 N--AGAKNVEERPI---VGAPVDALVNLADEEKADLLVVGNVGLSTIAGR------LLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp T--TTCCEEEEEEE---CSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHH------HTBBHHHHHHHHTTCEEEEECC
T ss_pred H--cCCCeEEEEEe---cCCHHHHHHHHHHhcCCCEEEECCCCCCcccce------eeccHHHHHHHhCCCCEEEEeC
Confidence 2 3455 665544 468999999999999999999999987653332 4789999999999999988743
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.94 E-value=8.5e-10 Score=102.05 Aligned_cols=133 Identities=12% Similarity=0.051 Sum_probs=87.3
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.++....+++.+..++ +....+++++|+++............+ ......++..+.++++.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~-- 72 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEA--EAHGARLIVVHAYEPVPDYLGEPFFEE------ALRRRLERAEGVLEEARAL-- 72 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHH--
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCCCccccccchHH------HHHHHHHHHHHHHHHHHHH--
Confidence 379999999999999999988887 334578999999872211000000000 0011112233334444332
Q ss_pred cce-EEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 510 GAA-SINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 510 ~~v-~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.++ .++..+. ..+..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||||.|+
T Consensus 73 ~g~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 73 TGVPKEDALLL---EGVPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HCCCGGGEEEE---ESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred cCCCccEEEEE---ecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence 123 3333333 2689999999999999999999999886655443 8999999999999999875
No 16
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.93 E-value=2.3e-09 Score=103.57 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=87.6
Q ss_pred ceeEEEecCCC---------ChhhHHHHHHhhCCCC-CCCcEEEEEEeeeccCCCcc----eeeecccccc-cccccccc
Q 047826 430 LQIVSCIHVPS---------NIISAINLLSISSPTN-ESPMVVNVLHLIKLNGQATS----IFVSHQSKNK-NIYTYCYS 494 (746)
Q Consensus 430 ~riLv~i~~~~---------~~~~li~l~~~~~~~~-~sp~~v~~lhlvel~~r~~~----~~~~~~~~~~-~~~~~~~~ 494 (746)
-|||+|++.++ ....+++.+..++..+ ....+++++|+++....... ........+. ........
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 57999999999 8899999988865222 24579999999864321110 0000000000 00001112
Q ss_pred hHHHHHHHHhccccCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccC
Q 047826 495 ENVILSFKKFGGLHWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKA 574 (746)
Q Consensus 495 ~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~A 574 (746)
++.++.+.+..+. .++.++..+. ..+..+.|++.|+++++|+||||.|++.+..+. .+|++.++|++++
T Consensus 86 ~~~l~~~~~~~~~--~g~~~~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~------~~Gsva~~vl~~a 154 (175)
T 2gm3_A 86 LHLLEFFVNKCHE--IGVGCEAWIK---TGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKV------FVGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEE---ESCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--CCCceEEEEe---cCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhh------hcCchHHHHHhCC
Confidence 3344444333222 3466665444 368999999999999999999999988655443 3899999999999
Q ss_pred CCceEEEecCC
Q 047826 575 PCSVGILIDHG 585 (746)
Q Consensus 575 pcsVgilvdr~ 585 (746)
||||.|+..+.
T Consensus 155 ~~pVlvv~~~~ 165 (175)
T 2gm3_A 155 ECPVMTIKRNA 165 (175)
T ss_dssp SSCEEEEECCG
T ss_pred CCCEEEEcCCc
Confidence 99999886543
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.93 E-value=5.7e-10 Score=105.72 Aligned_cols=137 Identities=9% Similarity=0.046 Sum_probs=92.0
Q ss_pred cceeEEEec--CCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhcc
Q 047826 429 ELQIVSCIH--VPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGG 506 (746)
Q Consensus 429 e~riLv~i~--~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 506 (746)
--|||+|++ .+++...+++.+..++. ....+++++|+++.+..........+ .........++.++.+.+..+
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 89 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAH--DYDVPLGICSVLESEDINIFDSLTPS---KIQAKRKHVEDVVAEYVQLAE 89 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHH--HHTCCEEEEEEECCCCTTCCCSSHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEEeCCCccccccCCHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999 99999999999888873 34578999999986542111000000 000011223344444443333
Q ss_pred ccCcce-EEEEEEEEcCCCChHHHHHHH-HhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 507 LHWGAA-SINAFTAISPPDLMHDDICTL-ALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 507 ~~~~~v-~v~~~~~vs~~~~~~~~I~~~-a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
. .++ .++..+..+ .+..+.|++. |+++++|+||||.|++.+.+ . .+|++.++|++++||||.++
T Consensus 90 ~--~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~------~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 90 Q--RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K------IAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp H--HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S------SCSCHHHHHHHHCSSEEEEE
T ss_pred H--cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-e------eecchHHHHHHhCCCCEEEe
Confidence 2 234 355555532 6899999999 99999999999999886543 2 37899999999999999775
No 18
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.85 E-value=4.4e-09 Score=97.54 Aligned_cols=135 Identities=6% Similarity=0.012 Sum_probs=87.4
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeec-cCCCcceeeecccccccccccccchHHHHHHHHhcccc
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKL-NGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLH 508 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel-~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 508 (746)
-|||+|++.+++...+++.+..++ +....+++++|+++- +..... ...... .. ......++..+.++++.+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~-~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~ 76 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIA--KRHDAKLSIIHVDVNFSDLYTG-LIDVNM-SS--MQDRISTETQKALLDLAESV 76 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEECCGGGCCC-CEEHHH-HH--HTTCCCCHHHHHHHHHHHHS
T ss_pred ceEEEEecCchhhHHHHHHHHHHH--HhcCCEEEEEEEecCchhhhcc-ccccch-HH--HHHHHHHHHHHHHHHHHHHc
Confidence 379999999999999999988887 334578999999842 321111 000000 00 00111233344455554432
Q ss_pred CcceEE-EEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecC
Q 047826 509 WGAASI-NAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDH 584 (746)
Q Consensus 509 ~~~v~v-~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr 584 (746)
++.+ +..+. ..+..+.|++.|++.++|+||||.| +.... . +|++.++|++++||||.|+..+
T Consensus 77 --~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~-------~-lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 77 --DYPISEKLSG---SGDLGQVLSDAIEQYDVDLLVTGHH-QDFWS-------K-LMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp --SSCCCCEEEE---EECHHHHHHHHHHHTTCCEEEEEEC-CCCHH-------H-HHHHHHHHHTTCCSEEEEEECC
T ss_pred --CCCceEEEEe---cCCHHHHHHHHHHhcCCCEEEEeCC-Cchhh-------h-hcchHHHHHhcCCCCEEEeeCC
Confidence 2222 22222 2688999999999999999999988 54311 1 6899999999999999887544
No 19
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.79 E-value=3.1e-09 Score=98.21 Aligned_cols=133 Identities=10% Similarity=-0.022 Sum_probs=89.7
Q ss_pred eeEEEecCCCChhhHHHHHHhhC-CCCCCCcEEEEEEeeeccCCCcceeeeccccccccccc-ccchHHHHHHHHhcccc
Q 047826 431 QIVSCIHVPSNIISAINLLSISS-PTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTY-CYSENVILSFKKFGGLH 508 (746)
Q Consensus 431 riLv~i~~~~~~~~li~l~~~~~-~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~-~~~~~i~~~f~~~~~~~ 508 (746)
|||+|++.+++...+++.+..++ .. ...+++++|+++.+........... +...... ...++.++.+.+..+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~- 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAY--DEIEMKEEEKAKLLTQKFSTFFTE- 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcH--HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 79999999999999999999887 43 3478999999886543211000000 0000011 2334444444444333
Q ss_pred CcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 509 WGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 509 ~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.++.++..+. ..+..+.|++.|+ ++|+||||.|++.+..+. . |++.++|++++||||.++
T Consensus 78 -~g~~~~~~v~---~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~------~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 -KGINPFVVIK---EGEPVEMVLEEAK--DYNLLIIGSSENSFLNKI------F-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp -TTCCCEEEEE---ESCHHHHHHHHHT--TCSEEEEECCTTSTTSSC------C-CCTTCHHHHHCSSCEEEE
T ss_pred -CCCCeEEEEe---cCChHHHHHHHHh--cCCEEEEeCCCcchHHHH------h-CcHHHHHHhcCCCCEEEe
Confidence 3456665544 3589999999998 999999999987665443 2 667789999999999875
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.59 E-value=7.2e-08 Score=88.96 Aligned_cols=128 Identities=10% Similarity=-0.026 Sum_probs=81.2
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEee-ec-cCCCc-ce-eeecccccccccccccchHHHHHHHHh-
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLI-KL-NGQAT-SI-FVSHQSKNKNIYTYCYSENVILSFKKF- 504 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlv-el-~~r~~-~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~- 504 (746)
-|||+|++.++....+++.+..++ +....+++++|++ +. +.... .. ...... +.........++.++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 81 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFS--EKLGAELDILAVLEDVYNLERANVTFGLPFPP-EIKEESKKRIERRLREVWEKL 81 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHH--TTTCCEEEEEEECHHHHHHHHHHHHHCCCCCT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHH--HHcCCeEEEEEEecccccccccccccCCCCCh-HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999888 4456799999998 63 21000 00 000000 00000011122333333221
Q ss_pred ccccCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 505 GGLHWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 505 ~~~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
... .+ .++..+. ..+..+.|++.|+++++|+||||.|++ ++.++|++++||||.|+
T Consensus 82 ~~~--~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 82 TGS--TE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HSC--CC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred hcc--CC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence 111 22 3444333 478999999999999999999998865 34589999999999774
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.57 E-value=3.5e-08 Score=103.47 Aligned_cols=136 Identities=13% Similarity=-0.002 Sum_probs=89.2
Q ss_pred cceeEEEecCCCC-------hhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHH
Q 047826 429 ELQIVSCIHVPSN-------IISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSF 501 (746)
Q Consensus 429 e~riLv~i~~~~~-------~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f 501 (746)
.-|||+|++.++. ...+++.+..++ +....+++++|+.+.+..... .... .......++..+.+
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~--~~~~-----~~~~~~~~~~~~~l 204 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIA--GLAKATLHVISAHPSPMLSSA--DPTF-----QLSETIEARYREAC 204 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEEEC-----------CH-----HHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHH--HHcCCeEEEEEEecCcccccc--Cchh-----HHHHHHHHHHHHHH
Confidence 4689999999998 788888888877 334578999999885432211 0000 00001112233344
Q ss_pred HHhccccCcceE-EEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEE
Q 047826 502 KKFGGLHWGAAS-INAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGI 580 (746)
Q Consensus 502 ~~~~~~~~~~v~-v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgi 580 (746)
+++.++. ++. ++..+. ..+..+.|++.|+++++|+|+||.|++.+..+.+ +|++.++|++++||||.+
T Consensus 205 ~~~~~~~--g~~~~~~~v~---~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~~pVLv 273 (290)
T 3mt0_A 205 RTFQAEY--GFSDEQLHIE---EGPADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLESDVLV 273 (290)
T ss_dssp HHHHHHH--TCCTTTEEEE---ESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCSSEEEE
T ss_pred HHHHHHc--CCCcceEEEe---ccCHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCCCCEEE
Confidence 4444432 221 122222 2689999999999999999999999987766544 899999999999999988
Q ss_pred EecC
Q 047826 581 LIDH 584 (746)
Q Consensus 581 lvdr 584 (746)
+..+
T Consensus 274 v~~~ 277 (290)
T 3mt0_A 274 LKPD 277 (290)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 7543
No 22
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.54 E-value=5.1e-07 Score=83.87 Aligned_cols=127 Identities=14% Similarity=0.208 Sum_probs=83.1
Q ss_pred CCcceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCC----------chhhhhHHHHHHhcccC--C-C
Q 047826 600 DSLSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDV----------DWETILDSEVLRGVKNS--E-Y 666 (746)
Q Consensus 600 ~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~----------~~~~~~d~~~i~~~~~~--~-~ 666 (746)
...++|++++.|.++.+.|+++|.++|+..+++++++|+.++...... +..++..++.++++... + .
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 82 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTS 82 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 347899999999999999999999999999999999999876433211 01112223334444321 1 2
Q ss_pred e-EEEEEEe--cChhHHHH-HHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 667 I-RYVKHVV--KDGAETVK-IVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 667 v-~y~e~~v--~~g~~~~~-~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
+ .+..... +-.+++.+ .+++ .++||+++|+++. .++.+| -+|...+-+..+ ++++||||.
T Consensus 83 ~~~~~~~~~~g~~~~~I~~~~a~~--~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvV~ 146 (146)
T 3s3t_A 83 APNLKTEISYGIPKHTIEDYAKQH--PEIDLIVLGATGT------NSPHRV----AVGSTTSYVVDH---APCNVIVIR 146 (146)
T ss_dssp CCCCEEEEEEECHHHHHHHHHHHS--TTCCEEEEESCCS------SCTTTC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred CcceEEEEecCChHHHHHHHHHhh--cCCCEEEECCCCC------CCcceE----EEcchHHHHhcc---CCCCEEEeC
Confidence 3 2222221 11333444 4443 3899999999863 123332 589998888887 889999984
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.47 E-value=1.2e-07 Score=100.43 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=90.9
Q ss_pred cceeEEEecCCCC-------hhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHH
Q 047826 429 ELQIVSCIHVPSN-------IISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSF 501 (746)
Q Consensus 429 e~riLv~i~~~~~-------~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f 501 (746)
.-|||+|++.++. ...+++.+..++.......+++++|+.+.+........... +.........++..+.+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 233 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDF--DPNLYNNALRGQHLIAM 233 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTC--CHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcc--cHHHHHHHHHHHHHHHH
Confidence 4689999999884 47777777666632200467999999886543211000000 00000011123334455
Q ss_pred HHhccccC-cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEE
Q 047826 502 KKFGGLHW-GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGI 580 (746)
Q Consensus 502 ~~~~~~~~-~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgi 580 (746)
+++.++.. ..+. ..+. ..+..+.|++.|++.++|||+||.|++.+..+. .+|++.++|++++||||.+
T Consensus 234 ~~~~~~~~~~~~~--~~v~---~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~pVLv 302 (319)
T 3olq_A 234 KELRQKFSIPEEK--THVK---EGLPEQVIPQVCEELNAGIVVLGILGRTGLSAA------FLGNTAEQLIDHIKCDLLA 302 (319)
T ss_dssp HHHHHHTTCCGGG--EEEE---ESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHH------HHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhCCCccc--EEEe---cCCcHHHHHHHHHHhCCCEEEEeccCccCCccc------cccHHHHHHHhhCCCCEEE
Confidence 55554422 1222 2222 268899999999999999999999988765443 4899999999999999988
Q ss_pred EecCC
Q 047826 581 LIDHG 585 (746)
Q Consensus 581 lvdr~ 585 (746)
+..++
T Consensus 303 v~~~~ 307 (319)
T 3olq_A 303 IKPDG 307 (319)
T ss_dssp ECCTT
T ss_pred ECCCC
Confidence 86554
No 24
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.46 E-value=2.8e-07 Score=85.66 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCC----------CC----CCchhhhhHHHHHHhccc----
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESD----------DG----DVDWETILDSEVLRGVKN---- 663 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~----------~~----~~~~~~~~d~~~i~~~~~---- 663 (746)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++.. .. ..+..++..++.++++..
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999986421 00 011112233344444432
Q ss_pred CC-Ce---EEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEE
Q 047826 664 SE-YI---RYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLV 739 (746)
Q Consensus 664 ~~-~v---~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLv 739 (746)
.+ .+ .+.-..-+-.+++.+.+++. ++||+++|+++. .++.+| -+|...+-+..+ ++++|||
T Consensus 82 ~g~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlv 146 (147)
T 3hgm_A 82 LGVPADKVRAFVKGGRPSRTIVRFARKR--ECDLVVIGAQGT------NGDKSL----LLGSVAQRVAGS---AHCPVLV 146 (147)
T ss_dssp TTCCGGGEEEEEEESCHHHHHHHHHHHT--TCSEEEECSSCT------TCCSCC----CCCHHHHHHHHH---CSSCEEE
T ss_pred cCCCccceEEEEecCCHHHHHHHHHHHh--CCCEEEEeCCCC------ccccce----eeccHHHHHHhh---CCCCEEE
Confidence 22 23 32222111134455555543 899999999863 223232 589998888887 8899998
Q ss_pred E
Q 047826 740 M 740 (746)
Q Consensus 740 v 740 (746)
|
T Consensus 147 V 147 (147)
T 3hgm_A 147 V 147 (147)
T ss_dssp C
T ss_pred C
Confidence 6
No 25
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.45 E-value=2.4e-07 Score=97.14 Aligned_cols=122 Identities=7% Similarity=0.041 Sum_probs=89.3
Q ss_pred CcceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccc
Q 047826 428 SELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGL 507 (746)
Q Consensus 428 ~e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 507 (746)
..-||++|++.++....+++.+..++ +.....++++|+.+-.. .++.++.+.++.++
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la--~~~~~~l~ll~v~~~~~---------------------~~~~l~~~~~~l~~ 225 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVV--KKTGGELHIIHVSEDGD---------------------KTADLRVMEEVIGA 225 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEECSSSC---------------------CHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHh--hhcCCEEEEEEEccCch---------------------HHHHHHHHHHHHHH
Confidence 34689999999999999999888887 33456899999976322 01222233333322
Q ss_pred cCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEec
Q 047826 508 HWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILID 583 (746)
Q Consensus 508 ~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvd 583 (746)
.++.++..+. ..+..+.|++.|++.++|+|+||.+++.+..+. .+|++.++|++++||||.++..
T Consensus 226 --~~~~~~~~~~---~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 226 --EGIEVHVHIE---SGTPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp --TTCCEEEEEE---CSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEEECS
T ss_pred --cCCcEEEEEe---cCCHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEEECC
Confidence 2344554433 369999999999999999999999988654433 4899999999999999988743
No 26
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.44 E-value=1.1e-06 Score=80.80 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=78.5
Q ss_pred ceEEEEeccCcChHHHHHHHHHhh-hCCCeEEEEEEeeecCCCCCC---------chhh-hhHHHHHHhcccC--C-CeE
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMV-RDNKVRLTVVHFIAESDDGDV---------DWET-ILDSEVLRGVKNS--E-YIR 668 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma-~~~~v~ltv~~~~~~~~~~~~---------~~~~-~~d~~~i~~~~~~--~-~v~ 668 (746)
++|++++.|.++.+.|+++|.++| +..+++++++|+.++...... +..+ +..++.++++... + .+.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 589999999999999999999999 999999999999876432210 0001 1222333333321 1 222
Q ss_pred EEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 669 YVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 669 y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
+... +..|+ ..+.|.+.++++||+++|+++. .++.+| - |...+-+..+ ++++||||.
T Consensus 82 ~~~~-v~~g~-~~~~I~~~a~~~dliV~G~~~~------~~~~~~----~-Gs~~~~vl~~---~~~pVlvv~ 138 (138)
T 3idf_A 82 PFVV-IKEGE-PVEMVLEEAKDYNLLIIGSSEN------SFLNKI----F-ASHQDDFIQK---APIPVLIVK 138 (138)
T ss_dssp CEEE-EEESC-HHHHHHHHHTTCSEEEEECCTT------STTSSC----C-CCTTCHHHHH---CSSCEEEEC
T ss_pred eEEE-EecCC-hHHHHHHHHhcCCEEEEeCCCc------chHHHH----h-CcHHHHHHhc---CCCCEEEeC
Confidence 2222 22332 3344444444999999999863 122222 2 8888888876 789999983
No 27
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.43 E-value=8.3e-07 Score=84.92 Aligned_cols=127 Identities=18% Similarity=0.073 Sum_probs=83.2
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC---------------C-Cc---hhhhhHHHHHHhcc
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDG---------------D-VD---WETILDSEVLRGVK 662 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~---------------~-~~---~~~~~d~~~i~~~~ 662 (746)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++.... + .+ ..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998643210 0 01 11122233444443
Q ss_pred cC----C-CeEEEEEE-ecC-hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcc
Q 047826 663 NS----E-YIRYVKHV-VKD-GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKC 735 (746)
Q Consensus 663 ~~----~-~v~y~e~~-v~~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~ 735 (746)
.. + .+.+.... ..+ .+++.+.+++. ++||||+|+++.. ++.+| -+|...+-+..+ +++
T Consensus 85 ~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~--~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~~---~~~ 149 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEE--NVSLIILPSRGKL------SLSHE----FLGSTVMRVLRK---TKK 149 (170)
T ss_dssp HHHHHHTTCSEEEEEEEEECHHHHHHHHHHHT--TCSEEEEESCCCC------C--TT----CCCHHHHHHHHH---CSS
T ss_pred HHHHHcCCceeeeeEEecCChHHHHHHHHHHc--CCCEEEECCCCCC------ccccc----eechHHHHHHHh---CCC
Confidence 31 2 33331111 111 34455555554 8999999999631 23232 589999988887 889
Q ss_pred cEEEEEEe
Q 047826 736 SVLVMQQQ 743 (746)
Q Consensus 736 svLvvqq~ 743 (746)
+||||...
T Consensus 150 PVlvv~~~ 157 (170)
T 2dum_A 150 PVLIIKEV 157 (170)
T ss_dssp CEEEECCC
T ss_pred CEEEEccC
Confidence 99999754
No 28
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.41 E-value=1.3e-06 Score=82.84 Aligned_cols=127 Identities=20% Similarity=0.177 Sum_probs=83.5
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecC-----C---CC-------CCc------hh---hhhHHHH
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAES-----D---DG-------DVD------WE---TILDSEV 657 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~-----~---~~-------~~~------~~---~~~d~~~ 657 (746)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++. . .. ..+ .. ++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998754 1 11 110 00 1122334
Q ss_pred HHhcccC---CCeEEEEEEe-cC-hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCC
Q 047826 658 LRGVKNS---EYIRYVKHVV-KD-GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLG 732 (746)
Q Consensus 658 i~~~~~~---~~v~y~e~~v-~~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~ 732 (746)
++++... ..+.+..... .+ .+++.+.+++. ++|||++|+|+. .++.+| -+|...+-+..+
T Consensus 85 l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~--~~dlIV~G~~g~------~~~~~~----~~GSv~~~vl~~--- 149 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDE--GVDIIIMGSHGK------TNLKEI----LLGSVTENVIKK--- 149 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--TCSEEEEESCCS------SCCTTC----SSCHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHc--CCCEEEEcCCCC------CCccce----EecchHHHHHHh---
Confidence 4444321 1233222221 11 34455555554 899999999863 233333 589999999887
Q ss_pred CcccEEEEEEe
Q 047826 733 GKCSVLVMQQQ 743 (746)
Q Consensus 733 ~~~svLvvqq~ 743 (746)
++|+||||...
T Consensus 150 ~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 SNKPVLVVKRK 160 (162)
T ss_dssp CCSCEEEECCC
T ss_pred CCCCEEEEeCC
Confidence 78999999753
No 29
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.39 E-value=1.1e-06 Score=83.10 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=83.5
Q ss_pred cceEEEEecc-CcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhccc----CC-CeEEEEEEec
Q 047826 602 LSNVAMLFIG-GNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKN----SE-YIRYVKHVVK 675 (746)
Q Consensus 602 ~~~I~~~f~g-g~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~----~~-~v~y~e~~v~ 675 (746)
.++|++++.| .+..+.|+++|.++|+..+++++++++.++..... +..++..++.++++.. .. .+... ..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~~-~~v~ 101 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEEH-LLVR 101 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEEE-EEES
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceEE-EEec
Confidence 5799999999 99999999999999999999999999987543221 2222223344444433 22 33332 2233
Q ss_pred C---hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 676 D---GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 676 ~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
. .+++++.+++. ++||+++|+++. .++.+| -+|...+-+... ++++||||+
T Consensus 102 ~G~~~~~I~~~a~~~--~~DLIV~G~~g~------~~~~~~----~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 102 GKEPPDDIVDFADEV--DAIAIVIGIRKR------SPTGKL----IFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp SSCHHHHHHHHHHHT--TCSEEEEECCEE------CTTSCE----ECCHHHHHHHHH---CSSCEEEEC
T ss_pred CCCHHHHHHHHHHHc--CCCEEEECCCCC------CCCCCE----EeccHHHHHHHh---CCCCEEEeC
Confidence 3 23444444543 899999999863 223222 589999999887 889999984
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.38 E-value=8.1e-07 Score=84.75 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=79.7
Q ss_pred CcceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEE--EeeecCCC-C--------CCchhhhhHHHHHHhcccC---CC
Q 047826 601 SLSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVV--HFIAESDD-G--------DVDWETILDSEVLRGVKNS---EY 666 (746)
Q Consensus 601 ~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~--~~~~~~~~-~--------~~~~~~~~d~~~i~~~~~~---~~ 666 (746)
..++|++++.|.+..+.|+++|.++|+ .+++++++ ++.++... . ..+..++..++.++++... ..
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 94 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG 94 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367999999999999999999999999 99999999 88654321 0 0011112233334443321 12
Q ss_pred eE-EEEEEecC--hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEEEe
Q 047826 667 IR-YVKHVVKD--GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQQQ 743 (746)
Q Consensus 667 v~-y~e~~v~~--g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvqq~ 743 (746)
+. +....... .+++++.+++. ++|||++|+++.. ++.+| -+|.+.+-+..+ ++|+||||...
T Consensus 95 v~~v~~~v~~G~~~~~I~~~a~~~--~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~---a~~PVlvV~~~ 159 (163)
T 1tq8_A 95 AKNVEERPIVGAPVDALVNLADEE--KADLLVVGNVGLS------TIAGR----LLGSVPANVSRR---AKVDVLIVHTT 159 (163)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHT--TCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH---TTCEEEEECCC
T ss_pred CCeEEEEEecCCHHHHHHHHHHhc--CCCEEEECCCCCC------cccce----eeccHHHHHHHh---CCCCEEEEeCC
Confidence 22 22222221 23445555543 8999999999631 23332 588898988887 78999999764
No 31
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.36 E-value=1.4e-06 Score=80.47 Aligned_cols=123 Identities=11% Similarity=0.184 Sum_probs=77.9
Q ss_pred ceEEEEeccCcC--hHHHHHHHHHhhhCCCeEEEEEEeeecCCCC---------CCchhhhh---HHHHHHhcccC-C--
Q 047826 603 SNVAMLFIGGND--DREALTFAKRMVRDNKVRLTVVHFIAESDDG---------DVDWETIL---DSEVLRGVKNS-E-- 665 (746)
Q Consensus 603 ~~I~~~f~gg~d--dreAl~~a~rma~~~~v~ltv~~~~~~~~~~---------~~~~~~~~---d~~~i~~~~~~-~-- 665 (746)
++|++++.|.++ .+.|+++|.++|+..+++++++|+.++.... ..+..++. ..+.++++..+ .
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999 9999999999999999999999998653211 00001111 11222322222 1
Q ss_pred --CeEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 666 --YIRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 666 --~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
.+.+.-..-+-.+++.+.+++. ++||+++|+++ + ++.+| -+|...+-+..+ ++++||||.
T Consensus 82 ~~~v~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~~---~----~~~~~----~~Gs~~~~v~~~---~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFHVAEGSPKDKILALAKSL--PADLVIIASHR---P----DITTY----LLGSNAAAVVRH---AECSVLVVR 143 (143)
T ss_dssp GGGEEEEEEESCHHHHHHHHHHHT--TCSEEEEESSC---T----TCCSC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred CCceEEEEEecChHHHHHHHHHHh--CCCEEEEeCCC---C----CCeee----eeccHHHHHHHh---CCCCEEEeC
Confidence 2232222111134455545543 89999999983 1 22232 589999999887 889999983
No 32
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.34 E-value=1.3e-06 Score=81.54 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=78.5
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCC-----------CC---chhhhhHHHHHHhcccC-C-
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDG-----------DV---DWETILDSEVLRGVKNS-E- 665 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~-----------~~---~~~~~~d~~~i~~~~~~-~- 665 (746)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++.... .. +..++..++.++++..+ .
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999999999999999998653210 00 11112223334443322 1
Q ss_pred C-eEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEEEe
Q 047826 666 Y-IRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQQQ 743 (746)
Q Consensus 666 ~-v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvqq~ 743 (746)
. +.+.-..-+-.+++++.+++. ++||+++|+++.. ++. --+|...+-+..+ ++++||||...
T Consensus 86 ~~~~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~~------~~~-----~~~Gs~~~~vl~~---~~~pVlvv~~~ 148 (150)
T 3tnj_A 86 DPAHRWLVWGEPREEIIRIAEQE--NVDLIVVGSHGRH------GLA-----LLLGSTANSVLHY---AKCDVLAVRLR 148 (150)
T ss_dssp CGGGEEEEESCHHHHHHHHHHHT--TCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEECC
T ss_pred CcceEEEecCCHHHHHHHHHHHc--CCCEEEEecCCCC------CcC-----eEecchHHHHHHh---CCCCEEEEeCC
Confidence 1 122111111134455555544 8999999998631 222 3688888888887 88999999764
No 33
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.33 E-value=1.3e-06 Score=80.24 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=80.3
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCC--C---C---CchhhhhHHHHHHhcccC-C--CeEEE
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDD--G---D---VDWETILDSEVLRGVKNS-E--YIRYV 670 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~--~---~---~~~~~~~d~~~i~~~~~~-~--~v~y~ 670 (746)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++... . . .+..++..++.++++... + .+.+.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 81 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDAL 81 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCCccEEE
Confidence 4689999999999999999999999999999999999864321 0 0 011122233444443321 1 12222
Q ss_pred EEEecChhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 671 KHVVKDGAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 671 e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
...-+-.+++.+.+++. ++||+++|+++.. ++.+| -+|...+-+..+ ++++||||.
T Consensus 82 ~~~g~~~~~I~~~a~~~--~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 82 LLEGVPAEAILQAARAE--KADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp EEESSHHHHHHHHHHHT--TCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH---CSSCEEEEC
T ss_pred EEecCHHHHHHHHHHHc--CCCEEEECCCCCc------hhhhh----hhccHHHHHHhc---CCCCEEEeC
Confidence 11111134455555554 8999999999631 23222 589999999887 889999984
No 34
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.25 E-value=1.3e-06 Score=82.17 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=81.0
Q ss_pred CcceEEEEec--cCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCC--------chhhhhHHHHHHhcccC--C-Ce
Q 047826 601 SLSNVAMLFI--GGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDV--------DWETILDSEVLRGVKNS--E-YI 667 (746)
Q Consensus 601 ~~~~I~~~f~--gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~--------~~~~~~d~~~i~~~~~~--~-~v 667 (746)
..++|+++.. |.++.+.|+++|.++|+..+++++++|+.++...... +..++..++.++++... + .+
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 93 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGV 93 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3679999999 9999999999999999999999999999875432100 11112233344444321 1 22
Q ss_pred -EEEEEEec--C-hhHHHHH-HHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEE
Q 047826 668 -RYVKHVVK--D-GAETVKI-VHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQ 741 (746)
Q Consensus 668 -~y~e~~v~--~-g~~~~~~-i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvq 741 (746)
.+...... + .+++.+. +++ .++|||++|+++.. + +. . -+|...+-+..+ ++|+||||.
T Consensus 94 ~~~~~~v~~~g~~~~~I~~~~a~~--~~~DlIV~G~~g~~------~---~~-~-~~Gs~~~~vl~~---a~~PVlvV~ 156 (156)
T 3fg9_A 94 NQVEPLVYEGGDVDDVILEQVIPE--FKPDLLVTGADTEF------P---HS-K-IAGAIGPRLARK---APISVIVVR 156 (156)
T ss_dssp SSEEEEEEECSCHHHHHHHTHHHH--HCCSEEEEETTCCC------T---TS-S-SCSCHHHHHHHH---CSSEEEEEC
T ss_pred CceEEEEEeCCCHHHHHHHHHHHh--cCCCEEEECCCCCC------c---cc-e-eecchHHHHHHh---CCCCEEEeC
Confidence 12222222 2 3334444 443 38999999998631 2 21 2 589999999887 889999984
No 35
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.24 E-value=4.7e-06 Score=76.80 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=79.1
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec-CC-CCC---------CchhhhhHHHHHHhcccC-C-CeE
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE-SD-DGD---------VDWETILDSEVLRGVKNS-E-YIR 668 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~-~~-~~~---------~~~~~~~d~~~i~~~~~~-~-~v~ 668 (746)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++ .. ... .+..++..++.++++..+ + .+.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPIS 81 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 4689999999999999999999999999999999999843 11 110 000111223334433322 1 221
Q ss_pred EEEEEecC-hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhhcCCCCCcccEEEEEEe
Q 047826 669 YVKHVVKD-GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLASKDLGGKCSVLVMQQQ 743 (746)
Q Consensus 669 y~e~~v~~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~~~~~~~svLvvqq~ 743 (746)
.......+ .+++.+.+++. ++||+++|++ .. ++ . .+|...+-+..+ ++++||||...
T Consensus 82 ~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~-~~------~~---~---~lgs~~~~vl~~---~~~pVlvv~~~ 139 (141)
T 1jmv_A 82 EKLSGSGDLGQVLSDAIEQY--DVDLLVTGHH-QD------FW---S---KLMSSTRQVMNT---IKIDMLVVPLR 139 (141)
T ss_dssp CEEEEEECHHHHHHHHHHHT--TCCEEEEEEC-CC------CH---H---HHHHHHHHHHTT---CCSEEEEEECC
T ss_pred EEEEecCCHHHHHHHHHHhc--CCCEEEEeCC-Cc------hh---h---hhcchHHHHHhc---CCCCEEEeeCC
Confidence 01111112 34566666654 7999999988 31 12 1 267888888876 88999999864
No 36
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.19 E-value=2.3e-06 Score=90.33 Aligned_cols=134 Identities=13% Similarity=-0.007 Sum_probs=88.1
Q ss_pred cceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchH-HHHHHHHhccc
Q 047826 429 ELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSEN-VILSFKKFGGL 507 (746)
Q Consensus 429 e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~-i~~~f~~~~~~ 507 (746)
.-+||+|++.++....+++.+..++. .....++++|+.+..... .. .. ..........++ +.+.++.+.+.
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~-~~--~~---~~~~~~~~~~~~~l~~~~~~~~~~ 242 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEAS--RRNVDLVALHAWSDVDVS-EW--PG---IDWPATQSMAEQVLAERLAGWQER 242 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHH--HTTCCEEEEEESCSSCCT-TC--SS---CCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHH--hcCCEEEEEEEeeccccc-CC--Cc---ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 35799999999999999998888773 334679999998743211 00 00 000000011111 22222333221
Q ss_pred cCcceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEe
Q 047826 508 HWGAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILI 582 (746)
Q Consensus 508 ~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilv 582 (746)
. .++.++..+. ..+..+.|.+.|+ ++|+||||.|++.+..+.+ +|++.++|++++||||.++.
T Consensus 243 ~-~~~~~~~~~~---~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 243 Y-PNVAITRVVV---RDQPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp C-TTSCEEEEEE---SSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEEC
T ss_pred C-CCCcEEEEEE---cCCHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEeC
Confidence 1 2455655443 3689999999997 8999999999987766554 89999999999999998874
No 37
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.07 E-value=1.3e-05 Score=76.98 Aligned_cols=128 Identities=11% Similarity=0.184 Sum_probs=76.4
Q ss_pred CcceEEEEeccCc---------ChHHHHHHHHHhh-hC--CCeEEEEEEeeecCC--CC------CCch--------hhh
Q 047826 601 SLSNVAMLFIGGN---------DDREALTFAKRMV-RD--NKVRLTVVHFIAESD--DG------DVDW--------ETI 652 (746)
Q Consensus 601 ~~~~I~~~f~gg~---------ddreAl~~a~rma-~~--~~v~ltv~~~~~~~~--~~------~~~~--------~~~ 652 (746)
..++|++++.|.+ ..+.|+++|.+++ +. .+++++++|+..+.. .. .+.. .++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 3679999999999 8899999999986 54 699999999975321 10 0000 011
Q ss_pred hHHHHHHhcccC--C-CeEEEEEEecC--hhHHHHHHHhhccCCcEEEEcccCCCCCccccccccCCCCCccchhhhhhh
Q 047826 653 LDSEVLRGVKNS--E-YIRYVKHVVKD--GAETVKIVHSIVSEFELIIVGRRYNLESPQTSCLKQWSEFPELGILGDLLA 727 (746)
Q Consensus 653 ~d~~~i~~~~~~--~-~v~y~e~~v~~--g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~la 727 (746)
..++.++++... . .+.+....... .+++++.+++. ++||||+|+++. .++.+| -+|...+-+.
T Consensus 84 ~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~g~------~~~~~~----~~Gsva~~vl 151 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRV--RPDFLVVGSRGL------GRFQKV----FVGTVSAFCV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHH--CCSEEEEEECCC------C------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHh--CCCEEEEeCCCC------Chhhhh----hcCchHHHHH
Confidence 123344444332 1 33332222221 34455555544 899999999863 233332 5888888888
Q ss_pred cCCCCCcccEEEEEEe
Q 047826 728 SKDLGGKCSVLVMQQQ 743 (746)
Q Consensus 728 s~~~~~~~svLvvqq~ 743 (746)
.+ ++|+||||...
T Consensus 152 ~~---a~~pVlvv~~~ 164 (175)
T 2gm3_A 152 KH---AECPVMTIKRN 164 (175)
T ss_dssp HH---CSSCEEEEECC
T ss_pred hC---CCCCEEEEcCC
Confidence 87 78999999864
No 38
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.88 E-value=2.2e-05 Score=71.97 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=37.1
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEee-e
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFI-A 640 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~-~ 640 (746)
.++|++++.|.++.+.|+++|.++|+..+++++++++. +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 57999999999999999999999999999999999998 5
No 39
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.82 E-value=1.7e-05 Score=81.55 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=78.0
Q ss_pred ceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhccccC
Q 047826 430 LQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGGLHW 509 (746)
Q Consensus 430 ~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 509 (746)
-|||+|++.++....+++.+..++.. ....++++|+.+-.+ + .++.++.+.++.+.
T Consensus 155 ~~ilv~~d~s~~~~~al~~a~~la~~--~~a~l~ll~v~~~~~---------~-----------~~~~l~~~~~~l~~-- 210 (268)
T 3ab8_A 155 EGALLGYDASESAVRALHALAPLARA--LGLGVRVVSVHEDPA---------R-----------AEAWALEAEAYLRD-- 210 (268)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHH--HTCCEEEEEECSSHH---------H-----------HHHHHHHHHHHHHH--
T ss_pred CEEEEEECCCHHHHHHHHHHHHhhhc--CCCEEEEEEEcCcHH---------H-----------HHHHHHHHHHHHHH--
Confidence 48999999999999999887777632 235689999865320 0 01122222222222
Q ss_pred cceEEEEEEEEcCCCChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 510 GAASINAFTAISPPDLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 510 ~~v~v~~~~~vs~~~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
.++.++..+. ..+..+.|.+.|++. |+|+||. +..+. .+|++.++|++++||||.++
T Consensus 211 ~~~~~~~~~~---~g~~~~~i~~~a~~~--dliV~G~----~~~~~------~~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 211 HGVEASALVL---GGDAADHLLRLQGPG--DLLALGA----PVRRL------VFGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp TTCCEEEEEE---CSCHHHHHHHHCCTT--EEEEEEC----CCSCC------SSCCHHHHHHHHCSSCEEEE
T ss_pred cCCceEEEEe---CCChHHHHHHHHHhC--CEEEECC----ccccc------EeccHHHHHHhcCCCCEEEe
Confidence 2355555433 378999999999888 9999997 22333 37889999999999999875
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.71 E-value=0.0069 Score=64.29 Aligned_cols=75 Identities=8% Similarity=-0.056 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhH-HHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHhhhHHHHHhhc
Q 047826 330 LAALVKFGACALLLLYWKMHRNDAMALALIMNIK-GIVEMAFYTFASDGRYVSPNMFRFMLGVVIVTGSVVPILVRKLY 407 (746)
Q Consensus 330 ~~~~~K~~~~~~~~~~~~~~~~~~~~lg~~m~~k-G~v~l~~~~~~~~~~~i~~~~~~~lv~~~lltt~i~~~l~~~~~ 407 (746)
+..+.-+..++..+|.+|.+.+|...+++..+.| ....+.++...+.. ++..--..++..+...++.+.+.+++.
T Consensus 236 l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~~~ 311 (332)
T 3zux_A 236 LHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYWA 311 (332)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677888899999999999988844444 55777776655521 233444445566666666666666543
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.88 E-value=0.072 Score=54.34 Aligned_cols=221 Identities=11% Similarity=0.033 Sum_probs=134.5
Q ss_pred CCcceeEEEecCCCChhhHHHHHHhhCCCCCCCcEEEEEEeeeccCCCcceeeecccccccccccccchHHHHHHHHhcc
Q 047826 427 ESELQIVSCIHVPSNIISAINLLSISSPTNESPMVVNVLHLIKLNGQATSIFVSHQSKNKNIYTYCYSENVILSFKKFGG 506 (746)
Q Consensus 427 ~~e~riLv~i~~~~~~~~li~l~~~~~~~~~sp~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 506 (746)
+..-.|||++.+|..-.+++.++..+...+ ..+.+.++.. +...+.+ .++ +.++++|-+
T Consensus 18 nWrP~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~p--~~~~~~l---------------~~q-l~~l~~~l~ 76 (294)
T 3g40_A 18 TWKANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLAG--NTDKENL---------------LSQ-LPSISEGFQ 76 (294)
T ss_dssp -CCCEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC-----CTTCH---------------HHH-HHHHHHHHH
T ss_pred CCCCcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEcc--CCCccHH---------------HHH-HHHHHHHHH
Confidence 566789999999999999999999998654 4677788732 2111100 111 244455544
Q ss_pred ccCcceEEEEEEEEcCCCChHHHHHHHHhhc-----CCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEE
Q 047826 507 LHWGAASINAFTAISPPDLMHDDICTLALDK-----LASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGIL 581 (746)
Q Consensus 507 ~~~~~v~v~~~~~vs~~~~~~~~I~~~a~e~-----~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgil 581 (746)
+ .++ ..++++-...+.++++-.+.+.. +.+.|++||..+.. +...+..+.++.. ++--.|.++
T Consensus 77 ~--r~v--~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~~-~~~~nVlil 144 (294)
T 3g40_A 77 E--EGV--FSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKAS-MYRMGVLLF 144 (294)
T ss_dssp H--TTC--EEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHHH-HTTCEEEEE
T ss_pred h--CCc--eeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHHH-HhCceEEEE
Confidence 3 233 34444444578999999988766 67999999865532 1223666665544 346677666
Q ss_pred ecCCC-CCCCccccCCCCcCCcceEEEEec--------cC--cChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchh
Q 047826 582 IDHGN-LKRPVTHTDSSSADSLSNVAMLFI--------GG--NDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWE 650 (746)
Q Consensus 582 vdr~~-~~~~~~~~~~~~~~~~~~I~~~f~--------gg--~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~ 650 (746)
-+... ++ ...++|=+=.- || .+-..++-+|-.+.++.++++.+..+++. +.+
T Consensus 145 ~~~~~~~f-----------g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a 207 (294)
T 3g40_A 145 SKHPQAGL-----------GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQ 207 (294)
T ss_dssp ECCTTTTT-----------TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHH
T ss_pred ecCCccCC-----------CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHH
Confidence 44322 22 12344544422 22 35677899999999999999999999863 345
Q ss_pred hhhHHHHHHhcccC--CCeEEEEEEecChhHHHHHHHhhccCCcEEEEcccCCC
Q 047826 651 TILDSEVLRGVKNS--EYIRYVKHVVKDGAETVKIVHSIVSEFELIIVGRRYNL 702 (746)
Q Consensus 651 ~~~d~~~i~~~~~~--~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~ 702 (746)
++..+.+++++.+. -.+.+. . |. .+..+.+++ +.+.||+++|-..+.
T Consensus 208 ~~~a~~~l~~Lv~~~Ri~a~~~-v-v~--~~F~~il~~-s~~ADL~flGl~~~~ 256 (294)
T 3g40_A 208 AQAAENFLQSLAELARIPNVKM-Q-VL--RENPIKSSK-LPFASLHIFSLDPNP 256 (294)
T ss_dssp HHHHHHHHHHHHHHHTCCSCEE-E-EE--SSCTTTSSS-CCCCSEEEEECCSSC
T ss_pred HHHHHHHHHHHHHHhcCCceEE-E-ec--CchHHHHhh-CcCCCEEEEcCCCCC
Confidence 55566777777653 122221 2 22 335566777 478999999987653
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=63.94 E-value=6.6 Score=41.05 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=39.0
Q ss_pred ceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS 664 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 664 (746)
.++++.|.||+|+--.|.++.+.....+..+.++++.+.-.+. .+.++++++..+
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~-------et~~~v~~~~~~ 101 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ-------EMYRFRDQMVEE 101 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH-------HHHHHHHHHHHT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCH-------HHHHHHHHHHHH
Confidence 3789999999999999999998876555667788876654321 134555555543
No 43
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=62.74 E-value=87 Score=32.44 Aligned_cols=80 Identities=8% Similarity=-0.081 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhhcCCCCchhhHHHHHhhHhHHHhhHHHHHHHHhhccCcccccch-hhhHHHHHHHHHHHHHHHHHHHHH
Q 047826 263 FTVLGLYILGLAVPHGPPLGSALVNKFDTMISGFFLPIFVTTSAMRLHDLSLHTF-NSLIWHNIALAGLAALVKFGACAL 341 (746)
Q Consensus 263 ~~~lgafiaGl~i~~~~~~~~~l~~kl~~~~~~~f~PiFF~~~G~~~d~~~l~~~-~~~~~~~~~~~~~~~~~K~~~~~~ 341 (746)
-.++.+.++|...|.... . ++.. ....+++-+...|+++++.++... ..| .......+.-++..++.++.
T Consensus 22 l~i~~~~~lg~~~P~~~~---~----~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~-~~~~~~l~~~~vi~Pll~~~ 92 (332)
T 3zux_A 22 LWAALFAAAAFFAPDTFK---W----AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHP-KVVIIGVIAQFAIMPATAWC 92 (332)
T ss_dssp HHHHHHHHHHHHCGGGTG---G----GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcchhhh---h----hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 345566788888886422 1 2333 234566777788999998887532 122 22334445566677778888
Q ss_pred HHHHhCCChH
Q 047826 342 LLLYWKMHRN 351 (746)
Q Consensus 342 ~~~~~~~~~~ 351 (746)
.++.++.+..
T Consensus 93 l~~~~~l~~~ 102 (332)
T 3zux_A 93 LSKLLNLPAE 102 (332)
T ss_dssp HHHHTTCCHH
T ss_pred HHHHhCCChH
Confidence 8888776653
No 44
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=57.04 E-value=25 Score=38.10 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=58.2
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhC-CCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC-C-CeEEEEEEe-cCh
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRD-NKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS-E-YIRYVKHVV-KDG 677 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~-~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~-~-~v~y~e~~v-~~g 677 (746)
..+|++.+.||.|.--.+.++.++.+. .+.+++.+|+...-. . +.+.+.++++++..+ + .....+..+ +.+
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-~----~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~ 87 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-A----NADAWVTHCENVCQQWQVPLVVERVQLAQEG 87 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-S----SHHHHHHHHHHHHHHTTCCEEEECCCCCCSS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-c----ccHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Confidence 357999999999999999999998877 899999999865422 1 112244455555443 2 221111111 111
Q ss_pred ---hHH-----HHHHHhhccCCcEEEEcccCC
Q 047826 678 ---AET-----VKIVHSIVSEFELIIVGRRYN 701 (746)
Q Consensus 678 ---~~~-----~~~i~~~~~~~DLiiVG~~~~ 701 (746)
++. -.++.+.+.++|.++.|.|.+
T Consensus 88 ~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 88 LGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp STTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 111 123344555699999998753
No 45
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=54.98 E-value=24 Score=36.31 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=53.0
Q ss_pred ceEEEEeccCcChHHHHHHHHHhh-h-----------------CCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMV-R-----------------DNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS 664 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma-~-----------------~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 664 (746)
.++++.|.||+|+--.|.++.+.. + .++.++.++++.+...+ ..+.+|++++..+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------pet~~fv~~~~~~ 126 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------PTLENFVLETSER 126 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC-------HHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC-------HHHHHHHHHHHHH
Confidence 479999999999999999988763 1 13566888887665432 2244566665543
Q ss_pred CCeEEEEEEe-----cChhHHHHHHHhhccCCcEEEEcccCCC
Q 047826 665 EYIRYVKHVV-----KDGAETVKIVHSIVSEFELIIVGRRYNL 702 (746)
Q Consensus 665 ~~v~y~e~~v-----~~g~~~~~~i~~~~~~~DLiiVG~~~~~ 702 (746)
-.+....... ..-.+...-........+.+++|.|.+.
T Consensus 127 ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 127 YCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp TTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred cCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 1111111100 0111112222222335789999999764
No 46
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=53.44 E-value=35 Score=32.78 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=27.2
Q ss_pred ceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
.+|++.|.||+|+--.|.++.+.. + ++.++++.+.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCC
Confidence 378999999999999888888874 2 4567777654
No 47
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=52.44 E-value=38 Score=37.02 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=43.7
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS 664 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 664 (746)
..+|++.+.||+|.--.+.++.++.+..+.+++++|+...-. ..+.+.+.++++++..+
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr----g~~s~~~~~~v~~~~~~ 76 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR----GRESEEEMEFVKRFCVE 76 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC----THHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC----ccccHHHHHHHHHHHHH
Confidence 457999999999999999999999988899999999874321 01222355566666543
No 48
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=44.98 E-value=38 Score=28.46 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=40.0
Q ss_pred CChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecC
Q 047826 524 DLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDH 584 (746)
Q Consensus 524 ~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr 584 (746)
....+.+.+++++++++.||+|.-++. ||+.+......+.+.+++-++ +.+| .++|.
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 345678889999999999999976553 444333333467777777777 8888 55654
No 49
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=44.34 E-value=15 Score=36.83 Aligned_cols=38 Identities=3% Similarity=-0.084 Sum_probs=29.9
Q ss_pred eEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecC
Q 047826 604 NVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAES 642 (746)
Q Consensus 604 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~ 642 (746)
++++.|.||+|+--.|.++.+.... +.++.++++.+.-
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 6899999999998889988888765 5567778776543
No 50
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=40.80 E-value=34 Score=34.15 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=52.8
Q ss_pred EEeccCcChHHHHHHHHHhhhCCCe--EEEEEEeeecCCCCCCchhhhhHHHHHHhcccCCCeEEEE--EE---ecChhH
Q 047826 607 MLFIGGNDDREALTFAKRMVRDNKV--RLTVVHFIAESDDGDVDWETILDSEVLRGVKNSEYIRYVK--HV---VKDGAE 679 (746)
Q Consensus 607 ~~f~gg~ddreAl~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~v~y~e--~~---v~~g~~ 679 (746)
+++.=.|.|.+|++.|.|+++. +. +++++.+=+++ .++.+. +.+.- -. +++...+ .. --+...
T Consensus 31 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------a~~~lr-~ala~-Ga-D~vi~v~~d~~~~~~~~~~~ 100 (252)
T 1efp_B 31 VKMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ------AAETLR-TALAM-GA-DRAILVVAADDVQQDIEPLA 100 (252)
T ss_dssp CCEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG------GHHHHH-HHHHH-TC-SEEEEEECCSSTTCCCCHHH
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------HHHHHH-HHHhc-CC-CEEEEEecChhhcccCCHHH
Confidence 3445568899999999999987 65 88888765322 111112 22221 11 1233222 10 112333
Q ss_pred HHHHHHhh--ccCCcEEEEcccCCC-----CCccccccccC
Q 047826 680 TVKIVHSI--VSEFELIIVGRRYNL-----ESPQTSCLKQW 713 (746)
Q Consensus 680 ~~~~i~~~--~~~~DLiiVG~~~~~-----~~~~~~gl~~w 713 (746)
+...+... ..+||+|+.|+.... -.|+++.+-+|
T Consensus 101 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 101 VAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 33333333 236999999998732 23555556566
No 51
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=40.30 E-value=23 Score=35.73 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=26.9
Q ss_pred EEeccCcChHHHHHHHHHhhhCCCe--EEEEEEee
Q 047826 607 MLFIGGNDDREALTFAKRMVRDNKV--RLTVVHFI 639 (746)
Q Consensus 607 ~~f~gg~ddreAl~~a~rma~~~~v--~ltv~~~~ 639 (746)
+++.=.|.|.+|++.|.|+++..+. +++++.+=
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G 65 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVG 65 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEES
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 4556678999999999999987666 88888764
No 52
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=37.18 E-value=37 Score=33.95 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=52.6
Q ss_pred EEeccCcChHHHHHHHHHhhhCCCe--EEEEEEeeecCCCCCCchhhhhHHHHHHhcccCCCeEEEE--EE---ecChhH
Q 047826 607 MLFIGGNDDREALTFAKRMVRDNKV--RLTVVHFIAESDDGDVDWETILDSEVLRGVKNSEYIRYVK--HV---VKDGAE 679 (746)
Q Consensus 607 ~~f~gg~ddreAl~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~v~y~e--~~---v~~g~~ 679 (746)
+++.=.|.|.+|++.|.|+++. +. +++++.+=+++ .++.+. +.+.- -. +++...+ .. --+...
T Consensus 34 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------a~~~lr-~ala~-Ga-D~vi~v~~d~~~~~~~~~~~ 103 (255)
T 1efv_B 34 VKHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------CQETIR-TALAM-GA-DRGIHVEVPPAEAERLGPLQ 103 (255)
T ss_dssp CCEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT------HHHHHH-HHHHH-TC-SEEEEEECCHHHHTTCCHHH
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------HHHHHH-HHHhc-CC-CEEEEEecChhhcccCCHHH
Confidence 4555578999999999999987 65 88888765322 111112 12221 11 1233222 10 112233
Q ss_pred HHHHHHhh--ccCCcEEEEcccCCC-----CCccccccccC
Q 047826 680 TVKIVHSI--VSEFELIIVGRRYNL-----ESPQTSCLKQW 713 (746)
Q Consensus 680 ~~~~i~~~--~~~~DLiiVG~~~~~-----~~~~~~gl~~w 713 (746)
+...+.+. ..+||+|+.|++... -.|+++.+-+|
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 33333333 236999999998732 23555666566
No 53
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=36.76 E-value=27 Score=35.99 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.6
Q ss_pred cceEEEEeccCcChHHHHHHHHHhhhCCCeE-EEEEEeeec
Q 047826 602 LSNVAMLFIGGNDDREALTFAKRMVRDNKVR-LTVVHFIAE 641 (746)
Q Consensus 602 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~-ltv~~~~~~ 641 (746)
..+|++.+.||+|.--.+.++.+..+..+.+ ++++++...
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 4589999999999999999999988777888 999988654
No 54
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=36.03 E-value=67 Score=32.97 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=50.8
Q ss_pred ceEEEEeccCcChHHHHHHHHHhh-h-----------------CCCeEEEEEEeeecCCCCCCchhhhhHHHHHHhcccC
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMV-R-----------------DNKVRLTVVHFIAESDDGDVDWETILDSEVLRGVKNS 664 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma-~-----------------~~~v~ltv~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 664 (746)
.++++.|.||+|+--.|.++.+-- + .+...+.++++-+...+.+ ..+|++++..+
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpE-------T~ef~d~~~~~ 131 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKT-------LENFIEETSLR 131 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHH-------HHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHH-------HHHHHHHHHHH
Confidence 469999999999999999987741 1 1235788888877655431 23355555432
Q ss_pred CCeEEEEEEecC---hhHHHHHHHhhccCCcEEEEcccCC
Q 047826 665 EYIRYVKHVVKD---GAETVKIVHSIVSEFELIIVGRRYN 701 (746)
Q Consensus 665 ~~v~y~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~ 701 (746)
-.........+. -.+-..-+++....+|.++.|.|++
T Consensus 132 ygL~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 132 YSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp TTEEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred hCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 011111111111 1122223344444699999999987
No 55
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=32.11 E-value=13 Score=24.69 Aligned_cols=26 Identities=4% Similarity=0.157 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhccc
Q 047826 156 TGLFITPLYYMTAYPVIFCLLTHLKI 181 (746)
Q Consensus 156 ~~l~ig~~ls~Ts~~vv~~il~el~l 181 (746)
.++++|+++|.|++..+..++++++.
T Consensus 5 ~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 5 DNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCChHHHHHHHHHcCC
Confidence 45788999999999999999999875
No 56
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=30.87 E-value=77 Score=28.38 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=40.3
Q ss_pred CChHHHHHHHHhhcCCcEEEecCccccccCCcccccchhhHHHHHHHhccCCCceEEEecC
Q 047826 524 DLMHDDICTLALDKLASLVILPFHRTWYIDGSLESEDQTVRNLNLCVLEKAPCSVGILIDH 584 (746)
Q Consensus 524 ~~~~~~I~~~a~e~~a~lII~p~h~~~~~dg~~~~~~~~~~~~n~~Vl~~ApcsVgilvdr 584 (746)
....+.|.+++++.+++.||+|.-.+. ||+.+......+.+.+++-++-+.||- ++|.
T Consensus 39 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV~-~~DE 96 (138)
T 1nu0_A 39 TPDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEVK-LHDE 96 (138)
T ss_dssp EECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCEE-EEEE
T ss_pred chHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCEE-EEcC
Confidence 345789999999999999999975542 454433333466777777666688884 4554
No 57
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=28.79 E-value=1.1e+02 Score=30.09 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=24.4
Q ss_pred ceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeec
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAE 641 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~ 641 (746)
.++++.|.||+|+--.|.++.+.. + ++.++++.+.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~--~--~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS--T--TCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC--C--CCeEEEecCC
Confidence 368888888888888888877765 2 3456665543
No 58
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=27.69 E-value=3.8e+02 Score=25.06 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=28.7
Q ss_pred ceEEEEeccCcChHHHHHHHHHhhhCCCeEEEEEEeeecC
Q 047826 603 SNVAMLFIGGNDDREALTFAKRMVRDNKVRLTVVHFIAES 642 (746)
Q Consensus 603 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~ 642 (746)
.++++.+.||.|.--++.++.+ .+.+++.+++....
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 5899999999999888877654 46788888887543
Done!