Query 047827
Match_columns 104
No_of_seqs 123 out of 616
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:31:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 1.9E-48 4.2E-53 271.4 11.0 104 1-104 1-104 (104)
2 PF02519 Auxin_inducible: Auxi 100.0 2.8E-38 6.2E-43 218.1 9.7 68 37-104 33-100 (100)
3 PLN03220 uncharacterized prote 100.0 3.8E-38 8.3E-43 219.8 10.1 97 1-102 1-102 (105)
4 PLN03219 uncharacterized prote 100.0 1.3E-36 2.8E-41 213.0 9.5 98 1-102 1-104 (108)
5 PF02214 BTB_2: BTB/POZ domain 89.2 0.34 7.4E-06 31.4 2.3 55 47-103 3-60 (94)
6 PRK02899 adaptor protein; Prov 89.2 0.32 7E-06 37.0 2.5 24 66-89 39-62 (197)
7 PRK02315 adaptor protein; Prov 86.3 0.57 1.2E-05 36.3 2.3 24 66-89 39-62 (233)
8 PF05389 MecA: Negative regula 83.1 0.37 8E-06 36.5 0.0 25 65-89 38-62 (220)
9 smart00666 PB1 PB1 domain. Pho 80.8 5 0.00011 25.1 4.7 48 48-100 7-65 (81)
10 cd05992 PB1 The PB1 domain is 78.7 7.3 0.00016 24.2 4.9 51 47-101 5-66 (81)
11 PF02100 ODC_AZ: Ornithine dec 64.7 13 0.00028 25.7 3.9 50 51-101 22-75 (108)
12 cd06410 PB1_UP2 Uncharacterize 60.4 23 0.0005 24.2 4.5 34 46-83 17-50 (97)
13 PF00564 PB1: PB1 domain; Int 58.1 30 0.00065 21.4 4.5 45 47-95 6-62 (84)
14 PF12058 DUF3539: Protein of u 50.4 2.6 5.6E-05 29.0 -1.5 11 61-71 4-14 (88)
15 PRK10308 3-methyl-adenine DNA 47.9 71 0.0015 25.4 6.1 62 42-103 45-121 (283)
16 cd06407 PB1_NLP A PB1 domain i 47.3 51 0.0011 21.6 4.4 47 47-97 5-63 (82)
17 cd06396 PB1_NBR1 The PB1 domai 44.8 75 0.0016 21.2 4.9 46 50-97 8-62 (81)
18 PF11834 DUF3354: Domain of un 43.7 19 0.00042 23.3 1.9 17 66-82 26-42 (69)
19 PF00651 BTB: BTB/POZ domain; 43.4 71 0.0015 20.1 4.6 53 46-103 14-71 (111)
20 cd06397 PB1_UP1 Uncharacterize 38.4 1.3E+02 0.0027 20.4 5.8 47 47-97 5-62 (82)
21 cd06398 PB1_Joka2 The PB1 doma 35.7 1.1E+02 0.0023 20.6 4.6 53 48-100 6-71 (91)
22 smart00153 VHP Villin headpiec 35.7 18 0.00039 20.6 0.7 19 62-80 1-19 (36)
23 PF02209 VHP: Villin headpiece 35.3 15 0.00032 21.1 0.3 19 62-80 1-19 (36)
24 PF07369 DUF1488: Protein of u 35.1 64 0.0014 20.5 3.3 20 44-63 18-37 (83)
25 TIGR03687 pupylate_cterm ubiqu 34.5 18 0.0004 20.6 0.6 19 68-86 12-32 (33)
26 COG5431 Uncharacterized metal- 34.0 52 0.0011 23.6 2.9 27 42-69 32-58 (117)
27 KOG2813 Predicted molecular ch 33.3 52 0.0011 28.0 3.3 57 44-101 273-329 (406)
28 PF05194 UreE_C: UreE urease a 30.3 84 0.0018 20.4 3.3 27 43-75 25-51 (87)
29 COG4862 MecA Negative regulato 30.2 34 0.00074 27.1 1.7 26 65-90 38-63 (224)
30 PF11822 DUF3342: Domain of un 30.2 59 0.0013 26.9 3.1 49 52-103 12-65 (317)
31 COG1759 5-formaminoimidazole-4 29.1 25 0.00055 29.6 0.8 38 38-76 88-136 (361)
32 TIGR03793 TOMM_pelo TOMM prope 28.8 99 0.0021 20.3 3.5 26 64-89 15-44 (77)
33 TIGR02529 EutJ ethanolamine ut 27.8 74 0.0016 24.2 3.1 29 66-94 44-73 (239)
34 PLN02752 [acyl-carrier protein 27.8 54 0.0012 26.0 2.5 48 35-82 31-78 (343)
35 PF06344 Parecho_VpG: Parechov 26.4 27 0.00058 17.7 0.3 12 36-47 7-18 (20)
36 PF13421 Band_7_1: SPFH domain 25.8 1.1E+02 0.0024 23.2 3.8 43 36-83 15-64 (211)
37 COG2139 RPL21A Ribosomal prote 25.0 62 0.0013 22.6 2.0 22 44-65 72-93 (98)
38 PF07429 Glyco_transf_56: 4-al 23.7 2.6E+02 0.0056 23.7 5.8 42 39-80 180-243 (360)
39 cd06279 PBP1_LacI_like_3 Ligan 22.0 96 0.0021 22.9 2.7 26 57-82 5-36 (283)
40 KOG1290 Serine/threonine prote 21.5 59 0.0013 29.1 1.7 20 40-59 62-83 (590)
41 cd01406 SIR2-like Sir2-like: P 21.3 1.1E+02 0.0025 22.8 3.0 36 43-84 1-36 (242)
42 KOG4209 Splicing factor RNPS1, 21.3 30 0.00064 27.0 -0.1 42 52-93 95-137 (231)
43 cd06399 PB1_P40 The PB1 domain 20.3 1.3E+02 0.0027 20.9 2.8 27 54-80 16-42 (92)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.9e-48 Score=271.39 Aligned_cols=104 Identities=88% Similarity=1.363 Sum_probs=100.0
Q ss_pred CCcccccchhhhHHHHHHHhhhhccCCCcccCCCCCCCCCCCceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcC
Q 047827 1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 1 m~~~~~~~~~~~~~~k~~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG 80 (104)
|+++|++||.|++++||+|+||.|+++.+.++....|.+||+||||||||++++||+||++|||||+|++||++||||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG 80 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFG 80 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999987776667889999999999999999999999999999999999999999999
Q ss_pred CCCCCceEecCcHHHHHHHHhhhC
Q 047827 81 FDHDMGLTIPCEEQVFQSLTSMLR 104 (104)
Q Consensus 81 ~~~~g~l~iPC~~~~Fe~vl~~l~ 104 (104)
|+|+|+|+|||+++.|++++|+|+
T Consensus 81 f~~~G~L~IPC~~~~Fe~ll~~i~ 104 (104)
T PLN03090 81 FDHDMGLTIPCEEVVFRSLTSMIR 104 (104)
T ss_pred CCCCCcEEEeCCHHHHHHHHHHhC
Confidence 999999999999999999999985
No 2
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=2.8e-38 Score=218.07 Aligned_cols=68 Identities=57% Similarity=1.062 Sum_probs=66.3
Q ss_pred CCCCCCceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCCCCceEecCcHHHHHHHHhhhC
Q 047827 37 PLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104 (104)
Q Consensus 37 ~~~vpkG~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~g~l~iPC~~~~Fe~vl~~l~ 104 (104)
..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+||
T Consensus 33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999999996
No 3
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=219.81 Aligned_cols=97 Identities=45% Similarity=0.797 Sum_probs=81.6
Q ss_pred CCcccccchhhhHHHHHHHhhhhccCCCcccCCCCCCCCCCCceEEEEEcC----CceEEEEeccCCCChHHHHHHHHHH
Q 047827 1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGE----NRSRYIIPITFLTRPEFQSLLQQAE 76 (104)
Q Consensus 1 m~~~~~~~~~~~~~~k~~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~----e~~RfvVp~~yL~hP~F~~LL~~ae 76 (104)
||+++.+.- ..+||+++|+. +++... +.+..+.+|||||||||||+ +++|||||++|||||+|++||++||
T Consensus 1 ~~~~~~~~~---~~~k~~~~~~~-~~~~~~-~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~Ae 75 (105)
T PLN03220 1 MGLSRFAIS---NATKQILKLNS-LANRNR-TSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAE 75 (105)
T ss_pred CCcchhhhH---HHHHHHHHHHh-hccccc-ccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHH
Confidence 777776543 36799999998 555422 12235678999999999997 5899999999999999999999999
Q ss_pred HhcCCCC-CCceEecCcHHHHHHHHhh
Q 047827 77 EEFGFDH-DMGLTIPCEEQVFQSLTSM 102 (104)
Q Consensus 77 eEfG~~~-~g~l~iPC~~~~Fe~vl~~ 102 (104)
|||||+| +|+|+|||+++.|++++..
T Consensus 76 EEfGf~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 76 EEFGFNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred HHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence 9999998 5999999999999999863
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=213.00 Aligned_cols=98 Identities=43% Similarity=0.675 Sum_probs=82.8
Q ss_pred CCcccccchhhhHHHHHHHhhhhccCCCccc---CCCCCCCCCCCceEEEEEcC--CceEEEEeccCCCChHHHHHHHHH
Q 047827 1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSY---DEQGLPLDVPKGHFVVYVGE--NRSRYIIPITFLTRPEFQSLLQQA 75 (104)
Q Consensus 1 m~~~~~~~~~~~~~~k~~l~r~~s~~~~~~~---~~~~~~~~vpkG~~aVyVG~--e~~RfvVp~~yL~hP~F~~LL~~a 75 (104)
|+++++... +.|||+|..+..+++... +..+.+.+|||||+|||||+ |++|||||++|||||+|++||++|
T Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~A 76 (108)
T PLN03219 1 MGLMRSMLP----NAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRA 76 (108)
T ss_pred CchHHHHHh----hHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHH
Confidence 666666544 789999877666665432 22345678999999999997 589999999999999999999999
Q ss_pred HHhcCCCC-CCceEecCcHHHHHHHHhh
Q 047827 76 EEEFGFDH-DMGLTIPCEEQVFQSLTSM 102 (104)
Q Consensus 76 eeEfG~~~-~g~l~iPC~~~~Fe~vl~~ 102 (104)
||||||++ +|+|+|||+++.|++|++.
T Consensus 77 eEEfGf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 77 EEECGFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred HHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence 99999997 5999999999999999974
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=89.23 E-value=0.34 Score=31.44 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=41.0
Q ss_pred EEEcCCceEEEEeccCCC-Ch--HHHHHHHHHHHhcCCCCCCceEecCcHHHHHHHHhhh
Q 047827 47 VYVGENRSRYIIPITFLT-RP--EFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSML 103 (104)
Q Consensus 47 VyVG~e~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG~~~~g~l~iPC~~~~Fe~vl~~l 103 (104)
+-||. ++|.++.+.|. +| .|..+++.......-+.+|.+-|-++...|++|+.-|
T Consensus 3 lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~yl 60 (94)
T PF02214_consen 3 LNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYL 60 (94)
T ss_dssp EEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHH
T ss_pred EEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHH
Confidence 45775 79999998887 54 7888888652222224568999999999999999865
No 6
>PRK02899 adaptor protein; Provisional
Probab=89.21 E-value=0.32 Score=36.95 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEe
Q 047827 66 PEFQSLLQQAEEEFGFDHDMGLTI 89 (104)
Q Consensus 66 P~F~~LL~~aeeEfG~~~~g~l~i 89 (104)
-+|.++|++|..|+||..+|||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccCCeEEE
Confidence 578888999999999999999875
No 7
>PRK02315 adaptor protein; Provisional
Probab=86.33 E-value=0.57 Score=36.33 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEe
Q 047827 66 PEFQSLLQQAEEEFGFDHDMGLTI 89 (104)
Q Consensus 66 P~F~~LL~~aeeEfG~~~~g~l~i 89 (104)
-+|.++|++|..|+||..+|||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccCCeEEE
Confidence 589999999999999999999986
No 8
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=83.09 E-value=0.37 Score=36.49 Aligned_cols=25 Identities=44% Similarity=0.673 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCceEe
Q 047827 65 RPEFQSLLQQAEEEFGFDHDMGLTI 89 (104)
Q Consensus 65 hP~F~~LL~~aeeEfG~~~~g~l~i 89 (104)
+-+|.++|++|.+|+||+.+|+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 3689999999999999999998875
No 9
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=80.80 E-value=5 Score=25.13 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=35.4
Q ss_pred EEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCC----------CCC-ceEecCcHHHHHHHH
Q 047827 48 YVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFD----------HDM-GLTIPCEEQVFQSLT 100 (104)
Q Consensus 48 yVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~g-~l~iPC~~~~Fe~vl 100 (104)
+-|++.+||.+|. ...|.+|..+..+-|+.. .+| .++|.++.+ +...+
T Consensus 7 ~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~D-l~~a~ 65 (81)
T smart00666 7 RYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDED-LEEAI 65 (81)
T ss_pred EECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHH-HHHHH
Confidence 3377889999986 788999999999999874 245 677888653 34333
No 10
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=78.74 E-value=7.3 Score=24.18 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=36.7
Q ss_pred EEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCC----------CCC-ceEecCcHHHHHHHHh
Q 047827 47 VYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFD----------HDM-GLTIPCEEQVFQSLTS 101 (104)
Q Consensus 47 VyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~g-~l~iPC~~~~Fe~vl~ 101 (104)
++-+++.+||.+|. .++.|.+|..+..+.|++. .+| -++|.++. +|+..++
T Consensus 5 ~~~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~-Dl~~a~~ 66 (81)
T cd05992 5 VKYGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDE-DLEEAIE 66 (81)
T ss_pred EEecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHH-HHHHHHH
Confidence 44456689999998 8899999999999999875 234 46666653 4554444
No 11
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=64.73 E-value=13 Score=25.74 Aligned_cols=50 Identities=26% Similarity=0.447 Sum_probs=25.4
Q ss_pred CCceEEE-EeccCC---CChHHHHHHHHHHHhcCCCCCCceEecCcHHHHHHHHh
Q 047827 51 ENRSRYI-IPITFL---TRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTS 101 (104)
Q Consensus 51 ~e~~Rfv-Vp~~yL---~hP~F~~LL~~aeeEfG~~~~g~l~iPC~~~~Fe~vl~ 101 (104)
+++.=|| +|-..+ .-..|.+|||.|||.+|.++ -.+.++=+-.....++.
T Consensus 22 ~~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~-vvic~~k~~~d~~~Llr 75 (108)
T PF02100_consen 22 DERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH-VVICLDKNRPDRASLLR 75 (108)
T ss_dssp -TTEEEEE-SS---SS--SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHH
T ss_pred cCCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE-EEEEEECCchhHHHhhh
Confidence 4556666 565443 45789999999999998654 35666655544444443
No 12
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=60.40 E-value=23 Score=24.15 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=26.7
Q ss_pred EEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCC
Q 047827 46 VVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDH 83 (104)
Q Consensus 46 aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~ 83 (104)
.=|||.+.+-..|+-+ -.|.+|..+..+.++...
T Consensus 17 l~Y~GG~tr~i~V~r~----~s~~el~~kl~~~~~~~~ 50 (97)
T cd06410 17 LRYVGGETRIVSVDRS----ISFKELVSKLSELFGAGV 50 (97)
T ss_pred EEEcCCceEEEEEcCC----CCHHHHHHHHHHHhCCCC
Confidence 4699999888888877 367778888888877655
No 13
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=58.11 E-value=30 Score=21.44 Aligned_cols=45 Identities=29% Similarity=0.453 Sum_probs=30.8
Q ss_pred EEEcCCceE-EEEeccCCCChHHHHHHHHHHHhcCCC----------CCC-ceEecCcHHH
Q 047827 47 VYVGENRSR-YIIPITFLTRPEFQSLLQQAEEEFGFD----------HDM-GLTIPCEEQV 95 (104)
Q Consensus 47 VyVG~e~~R-fvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~g-~l~iPC~~~~ 95 (104)
++-+++.+| +.+| ..+.|.+|.++.++.||.. .+| .++|.++.+.
T Consensus 6 ~~~~~~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl 62 (84)
T PF00564_consen 6 VRYGGDIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDL 62 (84)
T ss_dssp EEETTEEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHH
T ss_pred EEECCeeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHH
Confidence 344555555 4444 4579999999999999984 355 5777777643
No 14
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=50.38 E-value=2.6 Score=28.97 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=7.8
Q ss_pred cCCCChHHHHH
Q 047827 61 TFLTRPEFQSL 71 (104)
Q Consensus 61 ~yL~hP~F~~L 71 (104)
.|||||.|--|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999988543
No 15
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=47.95 E-value=71 Score=25.37 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=43.8
Q ss_pred CceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCCC---------------CceEecCcHHHHHHHHhhh
Q 047827 42 KGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHD---------------MGLTIPCEEQVFQSLTSML 103 (104)
Q Consensus 42 kG~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~---------------g~l~iPC~~~~Fe~vl~~l 103 (104)
.|++.|.-.+....+.+.++.-.-|....++.....-||.+.| -+|++|...+.||.+++.|
T Consensus 45 ~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcCCCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 4666666555555666666654345566788888888887766 2689999999999988764
No 16
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=47.32 E-value=51 Score=21.64 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=34.2
Q ss_pred EEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCC-----------CC-ceEecCcHHHHH
Q 047827 47 VYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDH-----------DM-GLTIPCEEQVFQ 97 (104)
Q Consensus 47 VyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-----------~g-~l~iPC~~~~Fe 97 (104)
+..|++..||-+|.+- -|++|-++-.+-|+++. +| .++|.|+.+.=|
T Consensus 5 ~~~~~d~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 5 ATYGEEKIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred EEeCCeEEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 3447778999988753 68999999888887653 34 577888876544
No 17
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=44.77 E-value=75 Score=21.21 Aligned_cols=46 Identities=9% Similarity=0.276 Sum_probs=34.3
Q ss_pred cCCceEEEEeccCCCChHHHHHHHHHHHhcCC--------CCCC-ceEecCcHHHHH
Q 047827 50 GENRSRYIIPITFLTRPEFQSLLQQAEEEFGF--------DHDM-GLTIPCEEQVFQ 97 (104)
Q Consensus 50 G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~--------~~~g-~l~iPC~~~~Fe 97 (104)
|++..||.+|-+ .++.|.+|.++-+.-|++ +.+| +++|.|+.+.=|
T Consensus 8 ~~d~~rf~~~~~--~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE 62 (81)
T cd06396 8 NGESQSFLVSDS--ENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEE 62 (81)
T ss_pred CCeEEEEEecCC--CCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHH
Confidence 556789998762 245799999999999985 3455 789999876543
No 18
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=43.74 E-value=19 Score=23.26 Aligned_cols=17 Identities=41% Similarity=0.774 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhcCCC
Q 047827 66 PEFQSLLQQAEEEFGFD 82 (104)
Q Consensus 66 P~F~~LL~~aeeEfG~~ 82 (104)
-.+++||+.|++.||+.
T Consensus 26 ~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS 42 (69)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 46999999999999985
No 19
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=43.43 E-value=71 Score=20.12 Aligned_cols=53 Identities=17% Similarity=0.503 Sum_probs=36.3
Q ss_pred EEEEcCCceEEEEeccCC--CChHHHHHHHHHHHhcCCCCCC--ceEec-CcHHHHHHHHhhh
Q 047827 46 VVYVGENRSRYIIPITFL--TRPEFQSLLQQAEEEFGFDHDM--GLTIP-CEEQVFQSLTSML 103 (104)
Q Consensus 46 aVyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~g--~l~iP-C~~~~Fe~vl~~l 103 (104)
.+.||+ .++|-+.-..| ..|.|+.+++.. +....+ .+.++ ++...|+.+++.+
T Consensus 14 ~i~v~d-~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 14 TIRVGD-GKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEETT-TEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEECC-CEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccc
Confidence 455665 47888888877 459999999987 222333 35555 7899999888643
No 20
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.37 E-value=1.3e+02 Score=20.45 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=35.2
Q ss_pred EEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCC----------CCC-ceEecCcHHHHH
Q 047827 47 VYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFD----------HDM-GLTIPCEEQVFQ 97 (104)
Q Consensus 47 VyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~g-~l~iPC~~~~Fe 97 (104)
|--|...+||+.|. -|.+.+|-++-+.-|-+. .+| .|||.=+.+..+
T Consensus 5 v~~~g~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d 62 (82)
T cd06397 5 SSFLGDTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQD 62 (82)
T ss_pred EEeCCceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHH
Confidence 33456689999998 799999999999877665 344 688876665544
No 21
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=35.73 E-value=1.1e+02 Score=20.59 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=38.0
Q ss_pred EEcCCceEEEEecc-CCCChHHHHHHHHHHHhcCCCC-----------CC-ceEecCcHHHHHHHH
Q 047827 48 YVGENRSRYIIPIT-FLTRPEFQSLLQQAEEEFGFDH-----------DM-GLTIPCEEQVFQSLT 100 (104)
Q Consensus 48 yVG~e~~RfvVp~~-yL~hP~F~~LL~~aeeEfG~~~-----------~g-~l~iPC~~~~Fe~vl 100 (104)
.-|++.+||-+|.. --.+..|..|.++-++-|.... +| -++|.|+.+.-+.+-
T Consensus 6 ~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~ 71 (91)
T cd06398 6 KYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQ 71 (91)
T ss_pred EeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHH
Confidence 33778899999974 1114578999999888877653 45 588899888766554
No 22
>smart00153 VHP Villin headpiece domain.
Probab=35.72 E-value=18 Score=20.63 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.8
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 047827 62 FLTRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 62 yL~hP~F~~LL~~aeeEfG 80 (104)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7888999999999999873
No 23
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=35.32 E-value=15 Score=21.11 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 047827 62 FLTRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 62 yL~hP~F~~LL~~aeeEfG 80 (104)
||+.-.|+++..++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7888999999999999874
No 24
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=35.07 E-value=64 Score=20.49 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=18.0
Q ss_pred eEEEEEcCCceEEEEeccCC
Q 047827 44 HFVVYVGENRSRYIIPITFL 63 (104)
Q Consensus 44 ~~aVyVG~e~~RfvVp~~yL 63 (104)
.|+++|+...-++.|+.+-|
T Consensus 18 ~F~a~~~g~~i~C~Is~~aL 37 (83)
T PF07369_consen 18 RFPAQVDGMQIRCAISAEAL 37 (83)
T ss_dssp EEEEEETTEEEEEEEEHHHH
T ss_pred EEEEEECCEEEEEEEeHHHH
Confidence 68999998889999999887
No 25
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=34.50 E-value=18 Score=20.61 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhc--CCCCCCc
Q 047827 68 FQSLLQQAEEEF--GFDHDMG 86 (104)
Q Consensus 68 F~~LL~~aeeEf--G~~~~g~ 86 (104)
+-.+|+.-+||| ||-|.|+
T Consensus 12 Id~vLe~NAe~FV~~fVQKGG 32 (33)
T TIGR03687 12 IDGVLESNAEEFVRGFVQKGG 32 (33)
T ss_pred HHHHHHHhHHHHHHHHHHccC
Confidence 457888888988 8877774
No 26
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=33.99 E-value=52 Score=23.60 Aligned_cols=27 Identities=41% Similarity=0.733 Sum_probs=23.1
Q ss_pred CceEEEEEcCCceEEEEeccCCCChHHH
Q 047827 42 KGHFVVYVGENRSRYIIPITFLTRPEFQ 69 (104)
Q Consensus 42 kG~~aVyVG~e~~RfvVp~~yL~hP~F~ 69 (104)
++-|.||||++ +-|++-.-|-+-|.|.
T Consensus 32 ~~~~fVyvG~~-rdYIl~~gfCSCp~~~ 58 (117)
T COG5431 32 KVKFFVYVGKE-RDYILEGGFCSCPDFL 58 (117)
T ss_pred eEEEEEEEccc-cceEEEcCcccCHHHH
Confidence 45689999997 6788888899999987
No 27
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=52 Score=27.95 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=43.4
Q ss_pred eEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCCCCceEecCcHHHHHHHHh
Q 047827 44 HFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTS 101 (104)
Q Consensus 44 ~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~g~l~iPC~~~~Fe~vl~ 101 (104)
.+.||--.+.+|+ |...+++...=.+||.+||-+-=|+......+||.--.|+++-.
T Consensus 273 ~~vV~wKn~~krk-VSehr~~~~iPeell~~AeG~~~f~~en~~iypis~~~~~Dv~~ 329 (406)
T KOG2813|consen 273 RIVVYWKNEKKRK-VSEHRTESEIPEELLFQAEGKRIFEEENDYIYPISQYQEEDVNK 329 (406)
T ss_pred EEEEEeechhhhh-hhhhcccccCcHHHHHhhhcchhhhhccceEEeccccchhhHHH
Confidence 3455555566676 46788998888999999996655777778999999888887643
No 28
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=30.25 E-value=84 Score=20.39 Aligned_cols=27 Identities=19% Similarity=0.503 Sum_probs=17.7
Q ss_pred ceEEEEEcCCceEEEEeccCCCChHHHHHHHHH
Q 047827 43 GHFVVYVGENRSRYIIPITFLTRPEFQSLLQQA 75 (104)
Q Consensus 43 G~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~a 75 (104)
=|+|++++++ +..|| ..+.+.+||++-
T Consensus 25 rH~p~~i~~~--~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 25 RHWPLFIEED--ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp TT--EEEETT--EEEEE------HHHHHHHHHT
T ss_pred CccceEEcCC--EEEec----CcHHHHHHHHHC
Confidence 3788999886 78888 567778888763
No 29
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=30.23 E-value=34 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCCceEec
Q 047827 65 RPEFQSLLQQAEEEFGFDHDMGLTIP 90 (104)
Q Consensus 65 hP~F~~LL~~aeeEfG~~~~g~l~iP 90 (104)
|-+|-++++.+.+|-+|...|+|.|-
T Consensus 38 EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 38 EELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHhcCCccccccCCceEEE
Confidence 57899999999999999999999873
No 30
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=30.20 E-value=59 Score=26.90 Aligned_cols=49 Identities=14% Similarity=0.466 Sum_probs=36.0
Q ss_pred CceEEEEeccCCC--ChHHHHHHHH---HHHhcCCCCCCceEecCcHHHHHHHHhhh
Q 047827 52 NRSRYIIPITFLT--RPEFQSLLQQ---AEEEFGFDHDMGLTIPCEEQVFQSLTSML 103 (104)
Q Consensus 52 e~~RfvVp~~yL~--hP~F~~LL~~---aeeEfG~~~~g~l~iPC~~~~Fe~vl~~l 103 (104)
..+=|..|.+.|- ...|++.|.. +.++.. +-.|.+-||+..|+.++.-+
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~idisVhCDv~iF~WLm~yv 65 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---EIDISVHCDVHIFEWLMRYV 65 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---CcceEEecChhHHHHHHHHh
Confidence 3567888888774 5789999976 444332 34699999999999988643
No 31
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=29.06 E-value=25 Score=29.56 Aligned_cols=38 Identities=32% Similarity=0.577 Sum_probs=24.1
Q ss_pred CCCCCceEEEEEcCC--ceEEEEec---------cCCCChHHHHHHHHHH
Q 047827 38 LDVPKGHFVVYVGEN--RSRYIIPI---------TFLTRPEFQSLLQQAE 76 (104)
Q Consensus 38 ~~vpkG~~aVyVG~e--~~RfvVp~---------~yL~hP~F~~LL~~ae 76 (104)
.-+|.|.|++|||-+ -..|.||+ +- ..-.=..||++|.
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~-~~~~~~~lLekAg 136 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEE-DRKLEYKLLEKAG 136 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcccccHhHhhhhc-chhhHHHHHHHcC
Confidence 358999999999953 24566664 11 2223356777764
No 32
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=28.76 E-value=99 Score=20.27 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=18.1
Q ss_pred CChHHHHHH----HHHHHhcCCCCCCceEe
Q 047827 64 TRPEFQSLL----QQAEEEFGFDHDMGLTI 89 (104)
Q Consensus 64 ~hP~F~~LL----~~aeeEfG~~~~g~l~i 89 (104)
..|.|++.| ..+=+||||+-+..+.|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i 44 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEV 44 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEE
Confidence 468999966 44456889987765544
No 33
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.83 E-value=74 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhcCCCCCC-ceEecCcHH
Q 047827 66 PEFQSLLQQAEEEFGFDHDM-GLTIPCEEQ 94 (104)
Q Consensus 66 P~F~~LL~~aeeEfG~~~~g-~l~iPC~~~ 94 (104)
-.++.|.+++++-.|...+. .+++|++..
T Consensus 44 ~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 44 EIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred HHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 47888999998888886655 799999754
No 34
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=27.82 E-value=54 Score=26.02 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=30.6
Q ss_pred CCCCCCCCceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCC
Q 047827 35 GLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFD 82 (104)
Q Consensus 35 ~~~~~vpkG~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 82 (104)
+.+.+.+.-...++-|....+--.=-+|.++|.|+++++++++-.|++
T Consensus 31 ~~~~~~~~~~a~lFpGQGsq~~gm~~~~~~~p~~~~~~~~~~~~lg~~ 78 (343)
T PLN02752 31 ALFADYKPTTAFLFPGQGAQAVGMGKEAAEVPAAKALFDKASEILGYD 78 (343)
T ss_pred ccccCCCCCEEEEECCCCcchhhHHHHHHhCHHHHHHHHHHHHHhCCC
Confidence 344444555556666753222222223778999999999999988865
No 35
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=26.37 E-value=27 Score=17.75 Aligned_cols=12 Identities=58% Similarity=1.029 Sum_probs=9.5
Q ss_pred CCCCCCCceEEE
Q 047827 36 LPLDVPKGHFVV 47 (104)
Q Consensus 36 ~~~~vpkG~~aV 47 (104)
.|..-|||.|||
T Consensus 7 lp~~kpkgtfpv 18 (20)
T PF06344_consen 7 LPVAKPKGTFPV 18 (20)
T ss_pred ccccccCCcccc
Confidence 456779999987
No 36
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=25.83 E-value=1.1e+02 Score=23.24 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=32.1
Q ss_pred CCCCCCCceEEEEE--cC-----CceEEEEeccCCCChHHHHHHHHHHHhcCCCC
Q 047827 36 LPLDVPKGHFVVYV--GE-----NRSRYIIPITFLTRPEFQSLLQQAEEEFGFDH 83 (104)
Q Consensus 36 ~~~~vpkG~~aVyV--G~-----e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~ 83 (104)
+.-.|++|..||.| |. +.-||.+-+. |.|.+..|... -||++.
T Consensus 15 S~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~--n~P~l~~l~~~---~~Gg~s 64 (211)
T PF13421_consen 15 SQLIVREGQCAVFVNDGKIADVFGPGRYTLDTD--NIPILSTLKNW---KFGGES 64 (211)
T ss_pred CEEEECCCCEEEEEECCEEEEEecCceEEEecC--CchHHHHHhhh---ccCCCC
Confidence 45679999999999 32 4578888775 88999988653 467654
No 37
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=24.95 E-value=62 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.2
Q ss_pred eEEEEEcCCceEEEEeccCCCC
Q 047827 44 HFVVYVGENRSRYIIPITFLTR 65 (104)
Q Consensus 44 ~~aVyVG~e~~RfvVp~~yL~h 65 (104)
-+.||+|...++..|..++|.+
T Consensus 72 ~V~v~~G~k~K~liv~peHLk~ 93 (98)
T COG2139 72 KVEVYDGNKEKTLIVRPEHLKP 93 (98)
T ss_pred EEEEecCCceEEEEeCHHHccc
Confidence 3678889888999999988875
No 38
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=23.72 E-value=2.6e+02 Score=23.67 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=33.0
Q ss_pred CCCCceEEEEEcC--------------------CceEEEEeccCC--CChHHHHHHHHHHHhcC
Q 047827 39 DVPKGHFVVYVGE--------------------NRSRYIIPITFL--TRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 39 ~vpkG~~aVyVG~--------------------e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG 80 (104)
..++|-..+.||. +..|++||.+|= |.-..+++.+.+++-||
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~ 243 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFG 243 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcC
Confidence 4567899999983 348999999996 45677888888888888
No 39
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.02 E-value=96 Score=22.89 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=17.2
Q ss_pred EEecc---CCCChHHHHHHH---HHHHhcCCC
Q 047827 57 IIPIT---FLTRPEFQSLLQ---QAEEEFGFD 82 (104)
Q Consensus 57 vVp~~---yL~hP~F~~LL~---~aeeEfG~~ 82 (104)
+||.. ++.||.|..+++ ++.+++||+
T Consensus 5 i~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~ 36 (283)
T cd06279 5 VLTDSLSYAFSDPVASQFLAGVAEVLDAAGVN 36 (283)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHHHCCCE
Confidence 56643 378999999976 444566653
No 40
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.50 E-value=59 Score=29.07 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=15.8
Q ss_pred CCCceEEEEEcCC--ceEEEEe
Q 047827 40 VPKGHFVVYVGEN--RSRYIIP 59 (104)
Q Consensus 40 vpkG~~aVyVG~e--~~RfvVp 59 (104)
.+-||.||++|+. ..||+|-
T Consensus 62 ~kGGYHpV~IGD~F~~gRY~v~ 83 (590)
T KOG1290|consen 62 RKGGYHPVRIGDVFNGGRYHVQ 83 (590)
T ss_pred hcCCCceeeccccccCceEEEE
Confidence 4679999999983 3688774
No 41
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=21.34 E-value=1.1e+02 Score=22.80 Aligned_cols=36 Identities=31% Similarity=0.637 Sum_probs=27.5
Q ss_pred ceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCCC
Q 047827 43 GHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHD 84 (104)
Q Consensus 43 G~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 84 (104)
|.+++++|-...+ + .+-|...+|++...+++|.+.+
T Consensus 1 g~lvlFiGAG~S~---~---~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSV---S---SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCcccc---c---cCCCChHHHHHHHHHHcCCccc
Confidence 6788999864211 1 5779999999999999987654
No 42
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=21.33 E-value=30 Score=26.97 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=32.0
Q ss_pred CceEEEEeccCCCChHHHHHHHHHHHhc-CCCCCCceEecCcH
Q 047827 52 NRSRYIIPITFLTRPEFQSLLQQAEEEF-GFDHDMGLTIPCEE 93 (104)
Q Consensus 52 e~~RfvVp~~yL~hP~F~~LL~~aeeEf-G~~~~g~l~iPC~~ 93 (104)
..+..-.|..|.++..|...+++-+++| ++.+...++|||+-
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~ 137 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDK 137 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccc
Confidence 3567778889999999999999977776 33333356999974
No 43
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=20.30 E-value=1.3e+02 Score=20.88 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.4
Q ss_pred eEEEEeccCCCChHHHHHHHHHHHhcC
Q 047827 54 SRYIIPITFLTRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 54 ~RfvVp~~yL~hP~F~~LL~~aeeEfG 80 (104)
+=..|.-+.-..|.|++||.....+|+
T Consensus 16 rdi~vee~l~~~P~~kdLl~lmr~~f~ 42 (92)
T cd06399 16 RDIAVEEDLSSTPLLKDLLELTRREFQ 42 (92)
T ss_pred cceEeecccccCccHHHHHHHHHHHhc
Confidence 445566677788999999999999987
Done!