Query 047827
Match_columns 104
No_of_seqs 123 out of 616
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 51.9 30 0.001 22.2 4.9 59 42-103 5-68 (107)
2 2xko_C PIPX, global nitrogen r 51.5 1.6 5.5E-05 29.1 -1.4 11 61-71 5-15 (89)
3 1und_A Advillin, P92; actin bi 47.5 4.6 0.00016 22.5 0.3 19 61-79 1-19 (37)
4 1vd2_A Protein kinase C, IOTA 47.3 31 0.0011 22.3 4.4 36 50-89 14-49 (89)
5 2vkp_A BTB/POZ domain-containi 46.1 34 0.0012 20.9 4.4 54 46-103 12-70 (109)
6 2vpk_A Myoneurin; transcriptio 44.5 30 0.001 21.6 3.9 49 46-103 26-79 (116)
7 2al3_A TUG long isoform; TUG U 42.0 29 0.001 22.7 3.6 40 43-84 9-48 (90)
8 1r29_A B-cell lymphoma 6 prote 40.7 31 0.0011 21.9 3.6 52 46-103 33-88 (127)
9 3n5b_B ASR0485 protein; PII, P 38.4 3.4 0.00012 28.5 -1.4 26 38-71 13-38 (112)
10 3ga1_A Nucleus accumbens-assoc 38.2 53 0.0018 20.9 4.5 50 45-103 36-89 (129)
11 2nz0_B Potassium voltage-gated 35.1 30 0.001 23.9 2.9 60 40-103 32-93 (140)
12 1y6i_A Mg-chelatase cofactor G 32.7 5.6 0.00019 30.3 -1.2 31 37-69 199-229 (233)
13 3qli_A Coenzyme A transferase; 31.7 27 0.00091 28.7 2.6 42 37-81 401-454 (455)
14 2if5_A Zinc finger and BTB dom 29.1 94 0.0032 19.2 4.5 53 46-103 29-84 (120)
15 1s1g_A Potassium voltage-gated 28.1 29 0.00099 23.3 1.9 60 40-103 10-71 (124)
16 1yu8_X Villin; alpha helix, 3- 25.2 17 0.00058 22.6 0.2 20 61-80 31-50 (67)
17 3b84_A Zinc finger and BTB dom 25.0 1E+02 0.0035 19.3 4.1 49 46-103 28-79 (119)
18 3m91_B Prokaryotic ubiquitin-l 24.5 23 0.00079 20.6 0.7 19 68-86 23-43 (44)
19 1ujs_A Actin-binding LIM prote 24.4 22 0.00074 23.3 0.7 20 61-80 46-65 (88)
20 3ezo_A Malonyl COA-acyl carrie 24.0 46 0.0016 25.1 2.5 40 43-82 10-49 (318)
21 3eh7_A 4-hydroxybutyrate COA-t 23.2 42 0.0014 27.1 2.3 43 37-80 381-434 (434)
22 1qzp_A Dematin; villin headpie 21.9 15 0.0005 22.9 -0.5 19 61-79 32-50 (68)
23 2ccq_A P97, peptide N-glycanas 21.8 57 0.0019 21.2 2.3 41 63-103 46-95 (99)
24 1y74_B MLIN-2/CASK, peripheral 21.5 26 0.00089 19.8 0.5 20 61-80 26-49 (50)
25 1zav_U 50S ribosomal protein L 21.4 59 0.002 17.0 1.9 13 68-80 18-30 (30)
26 2k6m_S Supervillin; SVHP, HP, 20.5 18 0.00063 22.4 -0.3 21 60-80 30-50 (67)
27 2lkt_A Retinoic acid receptor 20.1 44 0.0015 21.8 1.5 9 44-52 23-31 (125)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=51.86 E-value=30 Score=22.24 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=42.3
Q ss_pred CceEEEEEcCCceEEEEeccCCC-Ch--HHHHHHHHHHHhcC--CCCCCceEecCcHHHHHHHHhhh
Q 047827 42 KGHFVVYVGENRSRYIIPITFLT-RP--EFQSLLQQAEEEFG--FDHDMGLTIPCEEQVFQSLTSML 103 (104)
Q Consensus 42 kG~~aVyVG~e~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~g~l~iPC~~~~Fe~vl~~l 103 (104)
...+.+-||. ++|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.+...|++||+-+
T Consensus 5 ~~~v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~l 68 (107)
T 3drz_A 5 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYL 68 (107)
T ss_dssp CCEEEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHH
T ss_pred CCEEEEEECC--EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHh
Confidence 3567888995 79999987775 44 566664321 1232 34568899999999999999865
No 2
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=51.47 E-value=1.6 Score=29.06 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=8.5
Q ss_pred cCCCChHHHHH
Q 047827 61 TFLTRPEFQSL 71 (104)
Q Consensus 61 ~yL~hP~F~~L 71 (104)
.|||||.|--|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998543
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=47.52 E-value=4.6 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=16.9
Q ss_pred cCCCChHHHHHHHHHHHhc
Q 047827 61 TFLTRPEFQSLLQQAEEEF 79 (104)
Q Consensus 61 ~yL~hP~F~~LL~~aeeEf 79 (104)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=47.34 E-value=31 Score=22.29 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=27.5
Q ss_pred cCCceEEEEeccCCCChHHHHHHHHHHHhcCCCCCCceEe
Q 047827 50 GENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTI 89 (104)
Q Consensus 50 G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~g~l~i 89 (104)
.++..|+-||. ...|++|.++-.+-|++..+.++++
T Consensus 14 ~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 14 RGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 44577888887 4689999999999999865444443
No 5
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=46.13 E-value=34 Score=20.89 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEEcC--CceEEEEeccCC--CChHHHHHHHHHHHhcCCCCCCceEec-CcHHHHHHHHhhh
Q 047827 46 VVYVGE--NRSRYIIPITFL--TRPEFQSLLQQAEEEFGFDHDMGLTIP-CEEQVFQSLTSML 103 (104)
Q Consensus 46 aVyVG~--e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~g~l~iP-C~~~~Fe~vl~~l 103 (104)
.+.||+ +.++|-+.-..| ..|.|++++...-.|- . ..|.+| .+.+.|+.++.-+
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHH
Confidence 455654 357888888888 5899999997543332 1 578887 6889999988643
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=44.55 E-value=30 Score=21.61 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=35.7
Q ss_pred EEEEcCCceEEEEeccCC--CChHHHHHHHHHHHhcCCCCCCceEec---CcHHHHHHHHhhh
Q 047827 46 VVYVGENRSRYIIPITFL--TRPEFQSLLQQAEEEFGFDHDMGLTIP---CEEQVFQSLTSML 103 (104)
Q Consensus 46 aVyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~g~l~iP---C~~~~Fe~vl~~l 103 (104)
.+.||+ ++|-+.-..| ..|.|++++... .+..+.|+ .+...|+.++.-+
T Consensus 26 ~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 26 TIVIGE--FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEETT--EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEECC--EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHH
Confidence 455664 6788877777 579999998654 24577787 6889999988643
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=41.97 E-value=29 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=29.4
Q ss_pred ceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCCC
Q 047827 43 GHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHD 84 (104)
Q Consensus 43 G~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 84 (104)
|--.+++....+|+.|++. ..-.+.++|++|-+.|||+.+
T Consensus 9 ~m~v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp -CCEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCGG
T ss_pred ccEEEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCChh
Confidence 4445555666789999983 344788999999999999754
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=40.65 E-value=31 Score=21.89 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred EEEEcCCceEEEEeccCC--CChHHHHHHHHHHHhcCCCCCCceEe-c-CcHHHHHHHHhhh
Q 047827 46 VVYVGENRSRYIIPITFL--TRPEFQSLLQQAEEEFGFDHDMGLTI-P-CEEQVFQSLTSML 103 (104)
Q Consensus 46 aVyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~g~l~i-P-C~~~~Fe~vl~~l 103 (104)
.+.||+ ++|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.++.-+
T Consensus 33 ~l~v~~--~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 33 VIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECC--EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHH
Confidence 345654 6787777777 689999999765444 3567999 4 6889999988643
No 9
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=38.44 E-value=3.4 Score=28.45 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=9.2
Q ss_pred CCCCCceEEEEEcCCceEEEEeccCCCChHHHHH
Q 047827 38 LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSL 71 (104)
Q Consensus 38 ~~vpkG~~aVyVG~e~~RfvVp~~yL~hP~F~~L 71 (104)
.-||+|..--=+..| .|||||.|--|
T Consensus 13 ~~~~~~~~~~~ms~E--------~YLNHPTFGLL 38 (112)
T 3n5b_B 13 GLVPRGSHMNPENSE--------TYINHPTWGLL 38 (112)
T ss_dssp -------------CC--------CEEEETTTEEE
T ss_pred CcccCCccCCCcchh--------hhccCCccchh
Confidence 357777653333333 39999998543
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=38.22 E-value=53 Score=20.93 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=36.8
Q ss_pred EEEEEcCCceEEEEeccCCC--ChHHHHHHHHHHHhcCCCCCCceEec--CcHHHHHHHHhhh
Q 047827 45 FVVYVGENRSRYIIPITFLT--RPEFQSLLQQAEEEFGFDHDMGLTIP--CEEQVFQSLTSML 103 (104)
Q Consensus 45 ~aVyVG~e~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~g~l~iP--C~~~~Fe~vl~~l 103 (104)
+.+.||+ ++|-+.-..|. .|.|++++... ....|.|| .+.+.|+.++.-+
T Consensus 36 v~l~v~~--~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG--HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHH
Confidence 3555664 67777766664 69999998865 34579996 8899999998753
No 11
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=35.12 E-value=30 Score=23.85 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=41.8
Q ss_pred CCCceEEEEEcCCceEEEEeccCC-CChHHHHHHHHHHHhcCC-CCCCceEecCcHHHHHHHHhhh
Q 047827 40 VPKGHFVVYVGENRSRYIIPITFL-TRPEFQSLLQQAEEEFGF-DHDMGLTIPCEEQVFQSLTSML 103 (104)
Q Consensus 40 vpkG~~aVyVG~e~~RfvVp~~yL-~hP~F~~LL~~aeeEfG~-~~~g~l~iPC~~~~Fe~vl~~l 103 (104)
.....+.+-||. +||.+..+-| ++|. .+|..++...-+ +.+|.+-|-.+...|++||+-+
T Consensus 32 ~~~~~V~LNVGG--~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnfl 93 (140)
T 2nz0_B 32 RQDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFY 93 (140)
T ss_dssp TCCCEEEEEETT--EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECC--EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHH
Confidence 345788888996 7999987765 3342 233334433333 4567899999999999999865
No 12
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=32.71 E-value=5.6 Score=30.32 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=20.0
Q ss_pred CCCCCCceEEEEEcCCceEEEEeccCCCChHHH
Q 047827 37 PLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQ 69 (104)
Q Consensus 37 ~~~vpkG~~aVyVG~e~~RfvVp~~yL~hP~F~ 69 (104)
....|+||+|..-.=..-| +=.+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 3468999999864211111 445788999884
No 13
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=31.74 E-value=27 Score=28.72 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=29.2
Q ss_pred CCCCCCceEEEEEcC------------CceEEEEeccCCCChHHHHHHHHHHHhcCC
Q 047827 37 PLDVPKGHFVVYVGE------------NRSRYIIPITFLTRPEFQSLLQQAEEEFGF 81 (104)
Q Consensus 37 ~~~vpkG~~aVyVG~------------e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~ 81 (104)
+.+.|++.+-+.|-| ||-+=+| + +.||.||+.|.+++++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI--~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRII--E-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHH--T-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHH--H-ccCcchHHHHHHHHHHcCC
Confidence 446688877777633 2223333 3 8999999999999888764
No 14
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=29.12 E-value=94 Score=19.23 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred EEEEcCCceEEEEeccCC--CChHHHHHHHHHHHhcCCCCCCceEec-CcHHHHHHHHhhh
Q 047827 46 VVYVGENRSRYIIPITFL--TRPEFQSLLQQAEEEFGFDHDMGLTIP-CEEQVFQSLTSML 103 (104)
Q Consensus 46 aVyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~g~l~iP-C~~~~Fe~vl~~l 103 (104)
.+.||+ ++|-+.-..| ..|.|++++...-.| .....+.++ .+...|+.++.-+
T Consensus 29 ~l~v~~--~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 29 VILVEG--REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEETT--EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHH
T ss_pred EEEECC--EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHH
Confidence 345553 6787777777 479999999754333 234578888 5889999988643
No 15
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=28.12 E-value=29 Score=23.32 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=40.9
Q ss_pred CCCceEEEEEcCCceEEEEeccCCC-ChHHHHHHHHHHHhcCC-CCCCceEecCcHHHHHHHHhhh
Q 047827 40 VPKGHFVVYVGENRSRYIIPITFLT-RPEFQSLLQQAEEEFGF-DHDMGLTIPCEEQVFQSLTSML 103 (104)
Q Consensus 40 vpkG~~aVyVG~e~~RfvVp~~yL~-hP~F~~LL~~aeeEfG~-~~~g~l~iPC~~~~Fe~vl~~l 103 (104)
.....+.+-||. +||.+..+-|. +|. .+|..++...-+ +.+|.+-|-.+...|++||+-+
T Consensus 10 ~~~~~V~LNVGG--~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnfl 71 (124)
T 1s1g_A 10 RQDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFY 71 (124)
T ss_dssp --CCEEEEEETT--EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC--EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHH
Confidence 345678888996 79999887663 332 233334433223 4567899999999999999865
No 16
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=25.17 E-value=17 Score=22.63 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=18.4
Q ss_pred cCCCChHHHHHHHHHHHhcC
Q 047827 61 TFLTRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 61 ~yL~hP~F~~LL~~aeeEfG 80 (104)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999983
No 17
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=24.96 E-value=1e+02 Score=19.26 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=34.7
Q ss_pred EEEEcCCceEEEEeccCC--CChHHHHHHHHHHHhcCCCCCCceEec-CcHHHHHHHHhhh
Q 047827 46 VVYVGENRSRYIIPITFL--TRPEFQSLLQQAEEEFGFDHDMGLTIP-CEEQVFQSLTSML 103 (104)
Q Consensus 46 aVyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~g~l~iP-C~~~~Fe~vl~~l 103 (104)
.+.||+ ++|-+.-..| ..|.|++++... . +..|.|| .+...|+.++.-+
T Consensus 28 ~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 28 TLDVGG--LVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEETT--EEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHH
T ss_pred EEEECC--EEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHH
Confidence 345564 6777777776 479999998652 1 4578888 5678899888643
No 18
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=24.53 E-value=23 Score=20.55 Aligned_cols=19 Identities=21% Similarity=0.564 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhc--CCCCCCc
Q 047827 68 FQSLLQQAEEEF--GFDHDMG 86 (104)
Q Consensus 68 F~~LL~~aeeEf--G~~~~g~ 86 (104)
+-.+|+.-+||| ||-|.|+
T Consensus 23 Id~vLE~NAeeFV~~fVQKGG 43 (44)
T 3m91_B 23 IDDVLEENAEDFVRAYVQKGG 43 (44)
T ss_dssp HHHHHHHTC------------
T ss_pred HHHHHHHhHHHHHHHHHHccC
Confidence 456788888888 8888774
No 19
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=24.43 E-value=22 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.7
Q ss_pred cCCCChHHHHHHHHHHHhcC
Q 047827 61 TFLTRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 61 ~yL~hP~F~~LL~~aeeEfG 80 (104)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999984
No 20
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=23.98 E-value=46 Score=25.11 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=25.1
Q ss_pred ceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCC
Q 047827 43 GHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFD 82 (104)
Q Consensus 43 G~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 82 (104)
-...|+-|...+..=.--+.+++|.|++.++++.+.+|++
T Consensus 10 ~~~f~F~GQGsQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTTCCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcchhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 3455666642222111223338999999999999998864
No 21
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=23.24 E-value=42 Score=27.06 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCCCCCceEEEEEcCC----------ceEEEEeccCCCChHHHHHHHHHH-HhcC
Q 047827 37 PLDVPKGHFVVYVGEN----------RSRYIIPITFLTRPEFQSLLQQAE-EEFG 80 (104)
Q Consensus 37 ~~~vpkG~~aVyVG~e----------~~RfvVp~~yL~hP~F~~LL~~ae-eEfG 80 (104)
+.+.|+..+-++|-|- ++|..-=++ +.||.|++.|.+.+ +.||
T Consensus 381 ~v~~~~~~v~~vVTE~Gva~L~G~~~~Era~~li~-iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 381 AVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIA-IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp CEEECTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHHHC
T ss_pred CceeCccceeEEEcccEEEECCCCCHHHHHHHHhc-CCCCCcHHHHHHHHHHhhC
Confidence 3566777776776431 112111124 99999999776544 4465
No 22
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.91 E-value=15 Score=22.86 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=17.8
Q ss_pred cCCCChHHHHHHHHHHHhc
Q 047827 61 TFLTRPEFQSLLQQAEEEF 79 (104)
Q Consensus 61 ~yL~hP~F~~LL~~aeeEf 79 (104)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 23
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=21.78 E-value=57 Score=21.18 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHH------HhcCCCCCC-ceEec--CcHHHHHHHHhhh
Q 047827 63 LTRPEFQSLLQQAE------EEFGFDHDM-GLTIP--CEEQVFQSLTSML 103 (104)
Q Consensus 63 L~hP~F~~LL~~ae------eEfG~~~~g-~l~iP--C~~~~Fe~vl~~l 103 (104)
+++|.|++=+...+ +..||...+ .+++| +++...+++...|
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l 95 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLI 95 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHH
Confidence 67788887554322 357996554 78887 5666666655443
No 24
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=21.48 E-value=26 Score=19.80 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=14.6
Q ss_pred cCCCChHHHHHHHH----HHHhcC
Q 047827 61 TFLTRPEFQSLLQQ----AEEEFG 80 (104)
Q Consensus 61 ~yL~hP~F~~LL~~----aeeEfG 80 (104)
..|+.|-|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46788999999973 445564
No 25
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.37 E-value=59 Score=17.04 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcC
Q 047827 68 FQSLLQQAEEEFG 80 (104)
Q Consensus 68 F~~LL~~aeeEfG 80 (104)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4578888888887
No 26
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=20.53 E-value=18 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.9
Q ss_pred ccCCCChHHHHHHHHHHHhcC
Q 047827 60 ITFLTRPEFQSLLQQAEEEFG 80 (104)
Q Consensus 60 ~~yL~hP~F~~LL~~aeeEfG 80 (104)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999984
No 27
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=20.09 E-value=44 Score=21.79 Aligned_cols=9 Identities=33% Similarity=1.187 Sum_probs=8.0
Q ss_pred eEEEEEcCC
Q 047827 44 HFVVYVGEN 52 (104)
Q Consensus 44 ~~aVyVG~e 52 (104)
|.+||||+.
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999975
Done!