BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047829
         (407 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GSE|A Chain A, Crystal Structure Of Menaquinone-specific Isochorismate
           Synthase From Yersinia Pestis Co92
          Length = 458

 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 259 EENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECS 318
            ENLLV D I       VT   +   E+ RL KVQHL +      ++ A L     ++C 
Sbjct: 304 RENLLVVDDICQRLQGGVTAVDVMPPEIIRLRKVQHLRR------RICAQLSRASDTDC- 356

Query: 319 KLQKLVPAS 327
            LQ+L P +
Sbjct: 357 -LQRLQPTA 364


>pdb|3CLM|A Chain A, Crystal Structure Of Transaldolase (Yp_208650.1) From
           Neisseria Gonorrhoeae Fa 1090 At 1.14 A Resolution
          Length = 352

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 236 FISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295
           FIS   S L  T     P +LK +  + +A      +++  T P+   LE    ++VQ L
Sbjct: 202 FISRVDSALDATL----PDRLKGKTAIALAKAAYQDWEQYFTAPEFAALEAQGANRVQLL 257

Query: 296 WKENAESNKVF 306
           W      N  +
Sbjct: 258 WASTGVKNPAY 268


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,677,340
Number of Sequences: 62578
Number of extensions: 464388
Number of successful extensions: 1067
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 8
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)