Query 047829
Match_columns 407
No_of_seqs 143 out of 2145
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:32:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 4.6E-21 1E-25 205.5 19.6 293 44-405 589-909 (1153)
2 PLN03210 Resistant to P. syrin 99.8 5.3E-20 1.1E-24 197.4 18.9 305 40-406 554-886 (1153)
3 PLN00113 leucine-rich repeat r 99.8 7.8E-20 1.7E-24 195.1 15.3 85 306-400 379-463 (968)
4 PLN00113 leucine-rich repeat r 99.8 1.2E-19 2.5E-24 193.8 15.0 342 16-400 116-486 (968)
5 KOG4194 Membrane glycoprotein 99.7 1.6E-17 3.4E-22 155.8 3.2 335 18-399 78-426 (873)
6 KOG0444 Cytoskeletal regulator 99.5 5.1E-17 1.1E-21 153.6 -8.8 156 218-403 220-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.5 2E-15 4.3E-20 143.0 -3.7 292 16-347 76-378 (1255)
8 KOG4194 Membrane glycoprotein 99.5 4.4E-14 9.5E-19 133.0 4.8 308 43-398 77-401 (873)
9 KOG0472 Leucine-rich repeat pr 99.4 8.6E-16 1.9E-20 138.3 -8.1 221 16-257 66-308 (565)
10 KOG4341 F-box protein containi 99.3 3.4E-14 7.4E-19 128.8 -4.0 317 18-363 138-458 (483)
11 KOG4658 Apoptotic ATPase [Sign 99.3 1.2E-12 2.6E-17 134.8 4.4 135 17-170 544-679 (889)
12 KOG4341 F-box protein containi 99.3 6.1E-14 1.3E-18 127.1 -6.8 297 68-403 138-440 (483)
13 KOG0618 Serine/threonine phosp 99.2 2.8E-12 6.1E-17 126.9 1.6 117 269-402 373-489 (1081)
14 KOG0472 Leucine-rich repeat pr 99.2 7.1E-13 1.5E-17 119.7 -2.6 141 17-170 159-308 (565)
15 PRK15387 E3 ubiquitin-protein 99.2 8.4E-11 1.8E-15 119.0 11.6 254 20-368 203-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.2 2.8E-10 6.1E-15 115.3 13.7 238 18-346 222-459 (788)
17 KOG0618 Serine/threonine phosp 99.1 1.3E-11 2.9E-16 122.3 -0.2 245 44-343 241-488 (1081)
18 PRK15370 E3 ubiquitin-protein 99.0 2.2E-09 4.8E-14 109.3 9.6 29 44-75 199-227 (754)
19 PRK15370 E3 ubiquitin-protein 98.9 3.8E-09 8.2E-14 107.7 9.0 247 44-368 178-426 (754)
20 KOG4658 Apoptotic ATPase [Sign 98.8 2.3E-09 5.1E-14 110.9 3.7 107 42-168 543-651 (889)
21 cd00116 LRR_RI Leucine-rich re 98.8 1.4E-09 3E-14 101.5 1.2 122 40-170 19-148 (319)
22 KOG0617 Ras suppressor protein 98.7 2.5E-10 5.4E-15 91.9 -5.1 157 17-209 32-188 (264)
23 cd00116 LRR_RI Leucine-rich re 98.6 4.5E-08 9.7E-13 91.3 3.8 94 64-170 19-119 (319)
24 KOG3207 Beta-tubulin folding c 98.4 4.8E-08 1E-12 89.9 -0.0 191 131-346 119-315 (505)
25 KOG0617 Ras suppressor protein 98.4 1E-08 2.2E-13 82.7 -4.0 160 42-238 31-190 (264)
26 KOG2120 SCF ubiquitin ligase, 98.4 2.6E-09 5.5E-14 93.5 -9.0 164 132-317 209-373 (419)
27 KOG2120 SCF ubiquitin ligase, 98.3 3E-08 6.5E-13 86.9 -4.3 174 95-289 200-373 (419)
28 PRK15386 type III secretion pr 98.2 8.2E-06 1.8E-10 76.6 9.7 134 157-340 50-186 (426)
29 KOG4237 Extracellular matrix p 98.1 1.1E-06 2.3E-11 80.2 0.8 86 274-366 269-355 (498)
30 PF14580 LRR_9: Leucine-rich r 98.0 2.9E-06 6.3E-11 70.9 2.7 54 18-76 19-72 (175)
31 KOG1947 Leucine rich repeat pr 98.0 5.4E-07 1.2E-11 89.0 -3.4 122 132-260 187-309 (482)
32 KOG3207 Beta-tubulin folding c 97.9 3.6E-06 7.9E-11 77.8 1.3 209 16-255 119-335 (505)
33 PRK15386 type III secretion pr 97.9 6.4E-05 1.4E-09 70.7 9.2 132 193-367 52-187 (426)
34 KOG1947 Leucine rich repeat pr 97.8 1.5E-06 3.3E-11 85.8 -3.0 120 43-172 187-308 (482)
35 PF14580 LRR_9: Leucine-rich r 97.8 2.1E-05 4.5E-10 65.7 3.4 129 245-397 18-148 (175)
36 PF13855 LRR_8: Leucine rich r 97.6 0.00012 2.6E-09 49.8 4.7 57 308-367 2-59 (61)
37 PF13855 LRR_8: Leucine rich r 97.6 0.0001 2.2E-09 50.2 4.3 58 279-341 1-59 (61)
38 KOG4237 Extracellular matrix p 97.4 5.4E-06 1.2E-10 75.7 -5.3 127 20-168 69-197 (498)
39 KOG3665 ZYG-1-like serine/thre 97.4 6E-05 1.3E-09 76.6 1.5 87 16-117 146-232 (699)
40 KOG1259 Nischarin, modulator o 97.3 9.5E-05 2.1E-09 65.5 2.0 109 275-401 303-411 (490)
41 KOG1259 Nischarin, modulator o 97.2 4.7E-05 1E-09 67.3 -1.1 82 104-204 328-410 (490)
42 KOG1909 Ran GTPase-activating 97.1 0.00018 3.9E-09 65.0 0.9 180 94-288 19-222 (382)
43 KOG3665 ZYG-1-like serine/thre 97.1 0.00017 3.8E-09 73.3 0.7 141 104-261 121-265 (699)
44 COG4886 Leucine-rich repeat (L 96.9 0.001 2.3E-08 63.9 4.5 176 42-259 114-290 (394)
45 COG4886 Leucine-rich repeat (L 96.8 0.0012 2.5E-08 63.6 4.3 191 48-290 97-288 (394)
46 PLN03150 hypothetical protein; 96.6 0.0036 7.8E-08 63.8 6.2 63 275-341 438-500 (623)
47 PF12799 LRR_4: Leucine Rich r 96.4 0.0027 5.9E-08 39.7 2.5 30 45-75 2-31 (44)
48 PLN03150 hypothetical protein; 96.4 0.0051 1.1E-07 62.7 5.5 31 46-76 420-450 (623)
49 PF12799 LRR_4: Leucine Rich r 96.1 0.008 1.7E-07 37.6 3.5 40 18-61 1-40 (44)
50 KOG2982 Uncharacterized conser 95.8 0.018 3.9E-07 51.4 5.4 197 65-295 68-265 (418)
51 KOG0532 Leucine-rich repeat (L 95.5 0.003 6.5E-08 61.0 -0.4 101 45-169 144-244 (722)
52 KOG3864 Uncharacterized conser 95.5 0.0011 2.3E-08 55.7 -3.2 86 280-370 102-189 (221)
53 KOG2982 Uncharacterized conser 95.5 0.0092 2E-07 53.2 2.3 37 133-169 71-107 (418)
54 KOG0532 Leucine-rich repeat (L 95.4 0.0034 7.3E-08 60.7 -0.4 125 19-169 144-270 (722)
55 KOG1859 Leucine-rich repeat pr 95.2 0.0011 2.4E-08 65.7 -4.7 61 100-169 204-264 (1096)
56 KOG3864 Uncharacterized conser 94.3 0.0068 1.5E-07 51.0 -1.4 62 16-77 123-185 (221)
57 PF00560 LRR_1: Leucine Rich R 94.1 0.036 7.9E-07 28.8 1.6 20 45-65 1-20 (22)
58 KOG1644 U2-associated snRNP A' 93.8 0.14 3E-06 43.3 5.2 60 306-367 63-123 (233)
59 PF13504 LRR_7: Leucine rich r 93.3 0.064 1.4E-06 25.9 1.5 17 44-61 1-17 (17)
60 KOG2739 Leucine-rich acidic nu 93.3 0.021 4.6E-07 50.0 -0.4 36 132-169 64-101 (260)
61 KOG1859 Leucine-rich repeat pr 92.9 0.015 3.2E-07 58.1 -2.1 80 276-367 184-264 (1096)
62 KOG1644 U2-associated snRNP A' 92.6 0.31 6.8E-06 41.3 5.6 106 44-168 42-149 (233)
63 KOG2739 Leucine-rich acidic nu 91.9 0.12 2.5E-06 45.5 2.4 111 242-368 39-154 (260)
64 KOG1909 Ran GTPase-activating 91.7 0.13 2.9E-06 47.0 2.6 197 17-230 91-308 (382)
65 smart00367 LRR_CC Leucine-rich 89.3 0.25 5.3E-06 26.8 1.4 17 388-404 1-17 (26)
66 PF13306 LRR_5: Leucine rich r 86.6 2.4 5.1E-05 33.1 6.2 54 279-339 35-89 (129)
67 KOG0531 Protein phosphatase 1, 85.1 0.26 5.6E-06 47.8 -0.1 34 132-169 139-172 (414)
68 KOG2123 Uncharacterized conser 84.6 0.077 1.7E-06 47.1 -3.5 80 17-116 18-99 (388)
69 KOG4579 Leucine-rich repeat (L 84.6 0.31 6.8E-06 38.7 0.1 59 43-116 52-111 (177)
70 KOG2123 Uncharacterized conser 83.8 0.055 1.2E-06 48.0 -4.7 84 193-293 19-102 (388)
71 PF13306 LRR_5: Leucine rich r 83.2 6 0.00013 30.8 7.1 52 280-339 59-111 (129)
72 smart00369 LRR_TYP Leucine-ric 78.3 1.5 3.3E-05 23.5 1.5 21 43-64 1-21 (26)
73 smart00370 LRR Leucine-rich re 78.3 1.5 3.3E-05 23.5 1.5 21 43-64 1-21 (26)
74 KOG4579 Leucine-rich repeat (L 77.3 0.39 8.5E-06 38.2 -1.5 83 280-368 28-111 (177)
75 KOG0531 Protein phosphatase 1, 76.5 1.5 3.2E-05 42.5 1.8 106 275-399 91-196 (414)
76 COG5238 RNA1 Ran GTPase-activa 66.5 2.8 6.1E-05 37.4 1.1 65 43-116 57-131 (388)
77 COG5238 RNA1 Ran GTPase-activa 48.5 24 0.00051 31.8 3.7 95 41-144 27-131 (388)
78 PF13516 LRR_6: Leucine Rich r 45.5 15 0.00033 19.0 1.3 12 44-55 2-13 (24)
79 smart00364 LRR_BAC Leucine-ric 42.8 15 0.00033 19.9 1.0 18 44-62 2-19 (26)
80 smart00368 LRR_RI Leucine rich 23.7 55 0.0012 17.8 1.3 11 44-54 2-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.6e-21 Score=205.54 Aligned_cols=293 Identities=21% Similarity=0.268 Sum_probs=154.3
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
++||.|.+.++ .++.+|..+ .+.+|++|++.+ +.+..+++....+++|++|+++++..++..+.
T Consensus 589 ~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~--------------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ 652 (1153)
T PLN03210 589 PKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQG--------------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD 652 (1153)
T ss_pred cccEEEEecCC-CCCCCCCcC-CccCCcEEECcC--------------ccccccccccccCCCCCEEECCCCCCcCcCCc
Confidence 45777777776 456666553 456777777743 23444555556667777777776665554331
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDL 203 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (407)
. ..+++|+.|.+.+|..+..+|.. ++++++|+.|++++|+.++.++... .+++|+.|.+++|
T Consensus 653 -l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~i-----------~l~sL~~L~Lsgc 714 (1153)
T PLN03210 653 -L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTGI-----------NLKSLYRLNLSGC 714 (1153)
T ss_pred -c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCcC-----------CCCCCCEEeCCCC
Confidence 1 23567777777777666655443 5667777777777776665544211 1356666666666
Q ss_pred ccccccccCCCccccCCCccEEeEecCCCCccccCcc----------------------------cccccCCCceeeccc
Q 047829 204 PKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNS----------------------------TSILHMTADNKEPQK 255 (407)
Q Consensus 204 ~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----------------------------~~~~l~~L~~L~l~~ 255 (407)
..+..++. ...+|+.|++.++. +..++... ....+++|+.|++++
T Consensus 715 ~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 715 SRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred CCcccccc------ccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 55444321 12334444443321 22222110 001123444444444
Q ss_pred ccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCE
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLAT 335 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 335 (407)
|+.+..++.. .+.+++|+.|++++|..++.+|... .+++|+.|++++|.++..+|.. .++|+.
T Consensus 788 n~~l~~lP~s---------i~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 788 IPSLVELPSS---------IQNLHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred CCCccccChh---------hhCCCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCcccccccc---ccccCE
Confidence 4433322211 3445556666665555555555432 1455555556555555544421 234555
Q ss_pred EEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCCccee
Q 047829 336 LKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF 405 (407)
Q Consensus 336 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l~~~ 405 (407)
|++++ +.++.++ .....+++|+.|++.+|.+++.++ .....+++|+.+++++|++|+.+
T Consensus 851 L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~--------~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 851 LNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVS--------LNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred eECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCccC--------cccccccCCCeeecCCCcccccc
Confidence 55554 3444332 123456677777777776666654 33445666777777777766644
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=5.3e-20 Score=197.43 Aligned_cols=305 Identities=18% Similarity=0.207 Sum_probs=199.2
Q ss_pred ccccCCccEEeecCCC--c----cccccccccCCC-CcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEe
Q 047829 40 TLEFPSLERVSVTFCP--D----MKTFSQGILSTP-KLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQL 112 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~--~----l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 112 (407)
...+++|+.|.+.+.. . -..+|.++..+| +|+.|.+.+ ..++.+|..+ ...+|++|++
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~--------------~~l~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK--------------YPLRCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC--------------CCCCCCCCcC-CccCCcEEEC
Confidence 4478999999986542 1 124676666665 599999954 2233455444 4578999999
Q ss_pred ccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCC
Q 047829 113 SYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLF 192 (407)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (407)
.++. ++..|.+. ..+++|+.|+++++..++.++. +..+++|+.|++++|..+..++... . .+
T Consensus 619 ~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si---------~-~L 680 (1153)
T PLN03210 619 QGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSI---------Q-YL 680 (1153)
T ss_pred cCcc-cccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhh---------h-cc
Confidence 9976 77777765 5689999999999888776653 6788999999999998877665311 1 35
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccc---c-
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQ---I- 268 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~- 268 (407)
++|+.|++.+|..+..++... .+++|+.|++.+|..+..++.. .++|+.|+++++. ++.++.... +
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~-i~~lP~~~~l~~L~ 750 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETA-IEEFPSNLRLENLD 750 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCc-cccccccccccccc
Confidence 899999999999998876533 5789999999999887766431 5678888887665 332221100 0
Q ss_pred ------------ccccc-----cccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccc
Q 047829 269 ------------QHLFD-----EKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLE 331 (407)
Q Consensus 269 ------------~~~~~-----~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 331 (407)
..... ....+++|+.|++++++.+..+|.. +..+++|+.|++.+|.+++.+|... .++
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence 00000 0011345566666655555555543 2235566666666666666555443 455
Q ss_pred ccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCCcceec
Q 047829 332 NLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFS 406 (407)
Q Consensus 332 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l~~~~ 406 (407)
+|++|++++|..+..++. ..++|+.|++.++ .++.++ ..+..+++|++|++++|++|+.+.
T Consensus 826 sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP--------~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVP--------WWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred ccCEEECCCCCccccccc-----cccccCEeECCCC-CCccCh--------HHHhcCCCCCEEECCCCCCcCccC
Confidence 666666666655554421 1245556665554 344443 456789999999999999998753
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=7.8e-20 Score=195.14 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=43.2
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
+++|+.+++.+++....+|..+..+++|++|++++|+ +....+. ....++.|+.+++++|. +.. ..+...
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~-~~~~l~~L~~L~Ls~N~-l~~-------~~~~~~ 448 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPS-EFTKLPLVYFLDISNNN-LQG-------RINSRK 448 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECCh-hHhcCCCCCEEECcCCc-ccC-------ccChhh
Confidence 3444555555444333444444555566666665543 2222121 23345666666666552 221 122334
Q ss_pred eEecccceEecCCCC
Q 047829 386 IVFRKLEYLGLDCLP 400 (407)
Q Consensus 386 ~~~~~L~~L~l~~cp 400 (407)
..+++|+.|++++|.
T Consensus 449 ~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 449 WDMPSLQMLSLARNK 463 (968)
T ss_pred ccCCCCcEEECcCce
Confidence 467788888888774
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.2e-19 Score=193.80 Aligned_cols=342 Identities=14% Similarity=0.015 Sum_probs=161.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|++|+++++.-....|. ..+++|++|++++|.....+|..++.+++|++|++.++.- ..
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~----~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-------------~~ 178 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR----GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-------------VG 178 (968)
T ss_pred cCCCCCEEECcCCccccccCc----cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-------------cc
Confidence 467888888887542222222 2467777777777744446676777777777777754110 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+|..+..+++|++|+++++.-....+... ..+++|+.|.+.+|.....++. .++++++|++|++++|.....+
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPREL----GQMKSLKWIYLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHH----cCcCCccEEECcCCccCCcCCh--hHhcCCCCCEEECcCceecccc
Confidence 233344445555555555554221111111 2244555555554443332222 1444455555555444321111
Q ss_pred ecc-CCcc----------ccccccC---CCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCccc
Q 047829 176 FHL-EELS----------AKEEHIG---PLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNST 241 (407)
Q Consensus 176 ~~~-~~~~----------~~~~~~~---~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 241 (407)
+.. .... .+.+..+ ..+++|+.|+++++.....++. .+..+++|+.|++.++. +.+..+..
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~l~~n~-~~~~~~~~- 327 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE---LVIQLQNLEILHLFSNN-FTGKIPVA- 327 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh---hHcCCCCCcEEECCCCc-cCCcCChh-
Confidence 100 0000 0000000 0123444444444321111111 12233444444444432 22222211
Q ss_pred ccccCCCceeecccccccchhhhc----c----------ccccc-cccccccCCcceEeccccccccccccccccccccc
Q 047829 242 SILHMTADNKEPQKLKSEENLLVA----D----------QIQHL-FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVF 306 (407)
Q Consensus 242 ~~~l~~L~~L~l~~~~~l~~~~~~----~----------~~~~~-~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 306 (407)
...+++|+.|++++|.....++.. . .+... ......+++|+.|+++++.-...++.. +..+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~----~~~~ 403 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS----LGAC 403 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH----HhCC
Confidence 122444555554444322111110 0 00000 001222345555555553222222222 2347
Q ss_pred CCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCccccee
Q 047829 307 ANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCI 386 (407)
Q Consensus 307 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~ 386 (407)
++|+.|++.+|.....+|..+..++.|+.++++++ .+....+. ....+++|+.|++.+|.....++ .. .
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p--------~~-~ 472 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINS-RKWDMPSLQMLSLARNKFFGGLP--------DS-F 472 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-cccCccCh-hhccCCCCcEEECcCceeeeecC--------cc-c
Confidence 88999999988766677777888999999999885 44444332 23467899999999985433332 21 2
Q ss_pred EecccceEecCCCC
Q 047829 387 VFRKLEYLGLDCLP 400 (407)
Q Consensus 387 ~~~~L~~L~l~~cp 400 (407)
..++|+.|++++|.
T Consensus 473 ~~~~L~~L~ls~n~ 486 (968)
T PLN00113 473 GSKRLENLDLSRNQ 486 (968)
T ss_pred ccccceEEECcCCc
Confidence 34688888887764
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-17 Score=155.77 Aligned_cols=335 Identities=18% Similarity=0.170 Sum_probs=190.7
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeeccc----cccc---ccCcc
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEG----ELYH---REGNL 90 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~----~~~~---~~~~~ 90 (407)
+.-++|++++ .++..+.... ...+++|+.+++.++ .++.+|.......+|+.|.+.....- ..+. .+.-+
T Consensus 78 ~~t~~Ldlsn-Nkl~~id~~~-f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSN-NKLSHIDFEF-FYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccc-cccccCcHHH-HhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 3456688887 4566554443 457899999999988 88899988777788999998651110 0000 00000
Q ss_pred h---hhHHHHHHh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEE
Q 047829 91 N---STIQKCYKE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEV 166 (407)
Q Consensus 91 ~---~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 166 (407)
+ +.|..++.. +-.-.+|++|+++++. +.....+. | ..+.+|..|.+..++..+ + |...++++++|+.|++
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~-F--~~lnsL~tlkLsrNritt-L-p~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH-F--DSLNSLLTLKLSRNRITT-L-PQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccc-cccccccc-c--cccchheeeecccCcccc-c-CHHHhhhcchhhhhhc
Confidence 0 011111111 1122457777777665 33332232 3 346788888888876653 3 4455778899999988
Q ss_pred ccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccC
Q 047829 167 RNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHM 246 (407)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 246 (407)
..+. +..+.. .. + ..+++|+.|.+... ++..+. .+.+-.+.++++|++.. +++..+...++ .+++
T Consensus 229 nrN~-irive~---lt-F-----qgL~Sl~nlklqrN-~I~kL~--DG~Fy~l~kme~l~L~~-N~l~~vn~g~l-fgLt 293 (873)
T KOG4194|consen 229 NRNR-IRIVEG---LT-F-----QGLPSLQNLKLQRN-DISKLD--DGAFYGLEKMEHLNLET-NRLQAVNEGWL-FGLT 293 (873)
T ss_pred cccc-eeeehh---hh-h-----cCchhhhhhhhhhc-Cccccc--Ccceeeecccceeeccc-chhhhhhcccc-cccc
Confidence 7753 332211 11 1 13578888877653 222222 22355678888888865 56776655543 3488
Q ss_pred CCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-
Q 047829 247 TADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP- 325 (407)
Q Consensus 247 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~- 325 (407)
+|+.|+++.+.. ..+- ...+...++|+.|+|++ +.++.++++++.. ++.|+.|.++.++ +..+.+
T Consensus 294 ~L~~L~lS~NaI-~rih--------~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~---L~~Le~LnLs~Ns-i~~l~e~ 359 (873)
T KOG4194|consen 294 SLEQLDLSYNAI-QRIH--------IDSWSFTQKLKELDLSS-NRITRLDEGSFRV---LSQLEELNLSHNS-IDHLAEG 359 (873)
T ss_pred hhhhhccchhhh-heee--------cchhhhcccceeEeccc-cccccCChhHHHH---HHHhhhhcccccc-hHHHHhh
Confidence 888888876532 1111 12255677888888888 6778887776654 6677777776543 333332
Q ss_pred ccccccccCEEEeccCcCcccccC--chhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 326 ASWHLENLATLKVSKCHGLINLLT--LSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 326 ~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
.+..+.+|++|++.+ +.+..... ......+++|+.|.+.++ +++.++ ...+..++.|++|++.+.
T Consensus 360 af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~-------krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP-------KRAFSGLEALEHLDLGDN 426 (873)
T ss_pred HHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecc-------hhhhccCcccceecCCCC
Confidence 234456666666665 33322211 112234666666666665 555554 123445566666665543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=5.1e-17 Score=153.60 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=95.3
Q ss_pred cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccc
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWK 297 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~ 297 (407)
++.+|..++++ |+++..+|... -.+++|+.|.++++...+--. ..+.-.+|++|+++. ++++.+|.
T Consensus 220 ~l~NL~dvDlS-~N~Lp~vPecl--y~l~~LrrLNLS~N~iteL~~----------~~~~W~~lEtLNlSr-NQLt~LP~ 285 (1255)
T KOG0444|consen 220 DLHNLRDVDLS-ENNLPIVPECL--YKLRNLRRLNLSGNKITELNM----------TEGEWENLETLNLSR-NQLTVLPD 285 (1255)
T ss_pred hhhhhhhcccc-ccCCCcchHHH--hhhhhhheeccCcCceeeeec----------cHHHHhhhhhhcccc-chhccchH
Confidence 45566666664 35555554332 125667777776654221100 011234667777776 56666665
Q ss_pred cccccccccCCcCceeeccCcc-ccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhcc
Q 047829 298 ENAESNKVFANLKSPEISECSK-LQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQS 376 (407)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~c~~-l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 376 (407)
. ++. +++|++|.+.++.. ...+|.+++.+.+|+.++..+ +.++- +|++ ...++.|+.|.+..+ .+-.++
T Consensus 286 a-vcK---L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LEl-VPEg-lcRC~kL~kL~L~~N-rLiTLP-- 355 (1255)
T KOG0444|consen 286 A-VCK---LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLEL-VPEG-LCRCVKLQKLKLDHN-RLITLP-- 355 (1255)
T ss_pred H-Hhh---hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-ccccc-Cchh-hhhhHHHHHhccccc-ceeech--
Confidence 4 222 66777777665432 336777888888888888776 44543 3443 456778888877544 555555
Q ss_pred ccCCcccceeEecccceEecCCCCCcc
Q 047829 377 QVGEEAEDCIVFRKLEYLGLDCLPSLT 403 (407)
Q Consensus 377 ~~g~~~~~~~~~~~L~~L~l~~cp~l~ 403 (407)
+.+.-++.|+.||+...|+|.
T Consensus 356 ------eaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 356 ------EAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ------hhhhhcCCcceeeccCCcCcc
Confidence 778889999999999998874
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.46 E-value=2e-15 Score=143.00 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=188.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecc----------ccccc
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEE----------GELYH 85 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~----------~~~~~ 85 (407)
.+++||.+.+.+ .++++...-.....+..|..||++++ +++++|.++.+..++-.|+++.... ...+.
T Consensus 76 ~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhc-cccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 466666666665 45665555554567777777777777 7777777777777777777754211 01111
Q ss_pred ccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCC-CcCCccchhhccccCCee
Q 047829 86 REGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNM-SSAIPVNLLRCLNNLGWL 164 (407)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L 164 (407)
++.-.++.+..+|..+..+..|++|+++++| +.+..... +|. +.+|+.|++++.... .++|.+ +..+.+|+.+
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LPs--mtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dv 227 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LPS--MTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDV 227 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Ccc--chhhhhhhcccccchhhcCCCc--hhhhhhhhhc
Confidence 2222334566777777778889999999888 55544444 433 667777888875554 344444 7788899999
Q ss_pred EEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccc
Q 047829 165 EVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSIL 244 (407)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 244 (407)
+++.+ ++..++...+ .+++|+.|++++. +++++....+ --.+|++|+++. +.++.+|. . .-.
T Consensus 228 DlS~N-~Lp~vPecly----------~l~~LrrLNLS~N-~iteL~~~~~---~W~~lEtLNlSr-NQLt~LP~-a-vcK 289 (1255)
T KOG0444|consen 228 DLSEN-NLPIVPECLY----------KLRNLRRLNLSGN-KITELNMTEG---EWENLETLNLSR-NQLTVLPD-A-VCK 289 (1255)
T ss_pred ccccc-CCCcchHHHh----------hhhhhheeccCcC-ceeeeeccHH---HHhhhhhhcccc-chhccchH-H-Hhh
Confidence 99864 5555543221 2478899998875 3444322222 234688888877 56766653 2 223
Q ss_pred cCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccc
Q 047829 245 HMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV 324 (407)
Q Consensus 245 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 324 (407)
++.|+.|++.++..-.+=+++ -++.+..|+.+..++ +.+.-+|++ + -.++.|++|.++. +.+..+|
T Consensus 290 L~kL~kLy~n~NkL~FeGiPS--------GIGKL~~Levf~aan-N~LElVPEg-l---cRC~kL~kL~L~~-NrLiTLP 355 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPS--------GIGKLIQLEVFHAAN-NKLELVPEG-L---CRCVKLQKLKLDH-NRLITLP 355 (1255)
T ss_pred hHHHHHHHhccCcccccCCcc--------chhhhhhhHHHHhhc-cccccCchh-h---hhhHHHHHhcccc-cceeech
Confidence 788888888666543322222 155677777777776 566666654 3 3488899998874 5577788
Q ss_pred cccccccccCEEEeccCcCcccc
Q 047829 325 PASWHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 325 ~~~~~~~~L~~L~l~~c~~l~~~ 347 (407)
+.++.++-|+.|++...+++--.
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCC
Confidence 88888999999999887776544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.46 E-value=4.4e-14 Score=132.98 Aligned_cols=308 Identities=14% Similarity=0.088 Sum_probs=144.2
Q ss_pred cCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 43 FPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.+.-+.|+++++ ++..+- ..+.++++|+++++.. +.+..+|.......+|++|++.++.--+..
T Consensus 77 p~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~--------------N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~ 141 (873)
T KOG4194|consen 77 PSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNK--------------NELTRIPRFGHESGHLEKLDLRHNLISSVT 141 (873)
T ss_pred ccceeeeecccc-ccccCcHHHHhcCCcceeeeecc--------------chhhhcccccccccceeEEeeecccccccc
Confidence 356678999998 665443 3567899999999953 455666665556666777777765511111
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
.... ..++.|+.|+++.+.... ++ ...++.-.++++|+++++. ++.+.. +.+. .|.+|-.|.++
T Consensus 142 se~L----~~l~alrslDLSrN~is~-i~-~~sfp~~~ni~~L~La~N~-It~l~~--------~~F~-~lnsL~tlkLs 205 (873)
T KOG4194|consen 142 SEEL----SALPALRSLDLSRNLISE-IP-KPSFPAKVNIKKLNLASNR-ITTLET--------GHFD-SLNSLLTLKLS 205 (873)
T ss_pred HHHH----HhHhhhhhhhhhhchhhc-cc-CCCCCCCCCceEEeecccc-cccccc--------cccc-ccchheeeecc
Confidence 1111 335566666666544332 11 1113333456666666542 332211 0000 13444444444
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccc--cch--hhh----------ccc
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKS--EEN--LLV----------ADQ 267 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~--l~~--~~~----------~~~ 267 (407)
+. .++.++.. .+..+++|+.|++.+ +++..+-. .-++++++|+.|.+..+.. +.+ |.. .+.
T Consensus 206 rN-rittLp~r--~Fk~L~~L~~LdLnr-N~irive~-ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 206 RN-RITTLPQR--SFKRLPKLESLDLNR-NRIRIVEG-LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred cC-cccccCHH--Hhhhcchhhhhhccc-cceeeehh-hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 32 22222211 123344555555543 22222111 1123344444444433221 000 000 000
Q ss_pred cccc-cccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcc
Q 047829 268 IQHL-FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLI 345 (407)
Q Consensus 268 ~~~~-~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~ 345 (407)
+.+- ..-..++.+|+.|++++ +.+.++...+- ...++|+.|+++.+ .++.+++ .+..+.+|++|++++ +.+.
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~ 354 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSW---SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSID 354 (873)
T ss_pred hhhhhcccccccchhhhhccch-hhhheeecchh---hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchH
Confidence 0000 01133455666666666 34444433321 12566777776653 3454543 234456677777766 5555
Q ss_pred cccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCC
Q 047829 346 NLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDC 398 (407)
Q Consensus 346 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~ 398 (407)
.+ .++.+..+.+|+.|++..+. +.-.++ +++ .....++.|+.|++.+
T Consensus 355 ~l-~e~af~~lssL~~LdLr~N~-ls~~IE--Daa--~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 355 HL-AEGAFVGLSSLHKLDLRSNE-LSWCIE--DAA--VAFNGLPSLRKLRLTG 401 (873)
T ss_pred HH-HhhHHHHhhhhhhhcCcCCe-EEEEEe--cch--hhhccchhhhheeecC
Confidence 55 33444556677777766552 111111 111 2233477777777654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.43 E-value=8.6e-16 Score=138.28 Aligned_cols=221 Identities=18% Similarity=0.097 Sum_probs=120.1
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeec---------ccccccc
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKE---------EGELYHR 86 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~---------~~~~~~~ 86 (407)
-++.|.+|++.+ .++.++|.. ++.+.+++.+++++. ++..+|..++.+++|..++....+ ++..+..
T Consensus 66 nL~~l~vl~~~~-n~l~~lp~a--ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 66 NLACLTVLNVHD-NKLSQLPAA--IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred cccceeEEEecc-chhhhCCHH--HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 467788888887 466777766 567778888888877 777788888888888777775411 1122222
Q ss_pred cCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEE
Q 047829 87 EGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEV 166 (407)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 166 (407)
....++.+..+|++++.+.++..+++.++. ++..+... -.++.|+.++...+ .++.+|+. ++.+.+|..|.+
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~----i~m~~L~~ld~~~N-~L~tlP~~--lg~l~~L~~LyL 213 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH----IAMKRLKHLDCNSN-LLETLPPE--LGGLESLELLYL 213 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHH----HHHHHHHhcccchh-hhhcCChh--hcchhhhHHHHh
Confidence 223334555666666666666666666554 22221111 12344444443332 12333333 444555555555
Q ss_pred ccccccceeeccCCcccccc-------------ccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCC
Q 047829 167 RNCDSLEEVFHLEELSAKEE-------------HIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDM 233 (407)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l 233 (407)
..+ ++..++.+.+++.... ...+.++++..|++.+. +++++++.. .-+.+|++|++++ +.+
T Consensus 214 ~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~---clLrsL~rLDlSN-N~i 287 (565)
T KOG0472|consen 214 RRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI---CLLRSLERLDLSN-NDI 287 (565)
T ss_pred hhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHH---HHhhhhhhhcccC-Ccc
Confidence 443 3444444443333111 11123567777777764 566665543 2456678888876 456
Q ss_pred ccccCcccccccCCCceeeccccc
Q 047829 234 ETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 234 ~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
++.++. ...+ .|+.|.+.|++
T Consensus 288 s~Lp~s--Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 288 SSLPYS--LGNL-HLKFLALEGNP 308 (565)
T ss_pred ccCCcc--cccc-eeeehhhcCCc
Confidence 665542 1223 56666666654
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=3.4e-14 Score=128.77 Aligned_cols=317 Identities=15% Similarity=0.117 Sum_probs=206.4
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCcccc--ccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKT--FSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
..|+.|.+.+|.....-+.......+|++++|.+.+|..+++ +-.-...+++|++|++.. |..| .+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~---c~~i-----T~~~-- 207 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS---CSSI-----TDVS-- 207 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc---cchh-----HHHH--
Confidence 457888999998777666665566889999999999987763 222235588999999953 1111 1112
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
+-....++++|++|+++||+.++...... +. ..+.+++.+...+|.....-.....-...+-+..+++..|+.+++.
T Consensus 208 -Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~-rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 208 -LKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQ-RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred -HHHHHHhhhhHHHhhhccCchhhcCcchH-Hh-ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 22345678999999999999777632222 11 3356677777778876643222222233444666666678766664
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
.... +......|+.+...+|..+.+..... -..+.++|+.+.+..|.+++...-..+.+.++.|+.+.+.+
T Consensus 285 ~~~~--------i~~~c~~lq~l~~s~~t~~~d~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 285 DLWL--------IACGCHALQVLCYSSCTDITDEVLWA-LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred HHHH--------HhhhhhHhhhhcccCCCCCchHHHHH-HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 3111 11123678888888887765432221 12357899999999999988887777788899999999998
Q ss_pred ccccchhhhccccccccccccccCCcceEeccccccccccccccccc-ccccCCcCceeeccCcccccc-cccccccccc
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES-NKVFANLKSPEISECSKLQKL-VPASWHLENL 333 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L 333 (407)
|....+- .......+++.|+.+.++.|..++.-....+.. --.+..|+.+.+++|+.+.+- -..+..+++|
T Consensus 356 ~~~~~d~-------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 356 CGLITDG-------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred cceehhh-------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 8876542 011224568899999999876665431111100 012567888899999887632 2335668899
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEE
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMK 363 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 363 (407)
+++++..|..+...+...+...+|+++...
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 999999998876665555566667766543
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-12 Score=134.84 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=99.1
Q ss_pred ecccceeeeCcccc-cccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPR-LTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.++|++|-+.+... +...+.. ....+|.|++||+++|..+.++|.+|+.+.+||+|++.+ +.+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~--------------t~I~ 608 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD--------------TGIS 608 (889)
T ss_pred CCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC--------------CCcc
Confidence 34688887777432 3333222 245789999999999999999999999999999999965 5677
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
++|..+..++.|.+|++.....+...+... ..+.+|+.|.+..-....+....+.+.++.+|+.+.+...+
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchh----hhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 788888888999999999888766553222 44899999999875422222233446777777877775543
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=6.1e-14 Score=127.14 Aligned_cols=297 Identities=14% Similarity=0.084 Sum_probs=191.9
Q ss_pred CCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCC
Q 047829 68 PKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMS 147 (407)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 147 (407)
-.|+.|.++|+... ....+-.....++++++|.+.+|..+.+..... +. ..+++|+.+.+..|..++
T Consensus 138 g~lk~LSlrG~r~v-----------~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-la-~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAV-----------GDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-LA-RYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccC-----------CcchhhHHhhhCCchhhhhhhcceeccHHHHHH-HH-HhcchhhhhhhcccchhH
Confidence 35777777663321 111233345677889999999988776543322 22 457899999999998888
Q ss_pred cCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeE
Q 047829 148 SAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTI 227 (407)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l 227 (407)
+.........+++|++|++++|+.+..-+. ..... ....++.+...+|..+..=. ....-...+-+..+++
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv-------~~~~r-G~~~l~~~~~kGC~e~~le~-l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGV-------QALQR-GCKELEKLSLKGCLELELEA-LLKAAAYCLEILKLNL 275 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcc-------hHHhc-cchhhhhhhhcccccccHHH-HHHHhccChHhhccch
Confidence 766555677899999999999987665110 00011 12345555555555432100 0000113445666667
Q ss_pred ecCCCCccccCcccccccCCCceeecccccccchhhhcccccccccccc-ccCCcceEeccccccccccccccccccccc
Q 047829 228 ENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKV-TFPQLRFLELSRLHKVQHLWKENAESNKVF 306 (407)
Q Consensus 228 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 306 (407)
..|..++....+.+...+..|+.+..++|..+.+.+-. +++ ..++|+.+.++.|..++......+.. ++
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~--------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--n~ 345 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW--------ALGQHCHNLQVLELSGCQQFSDRGFTMLGR--NC 345 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH--------HHhcCCCceEEEeccccchhhhhhhhhhhc--CC
Confidence 78877777765566667888888888888887654321 122 36889999999888877666555432 47
Q ss_pred CCcCceeeccCcccccc--ccccccccccCEEEeccCcCcccccCch---hhhccccCCEEEEecccchhhhhccccCCc
Q 047829 307 ANLKSPEISECSKLQKL--VPASWHLENLATLKVSKCHGLINLLTLS---TSESLVNLERMKITDCKMMEEIIQSQVGEE 381 (407)
Q Consensus 307 ~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~ 381 (407)
+.|+.+++.+|..+.+- -.....++.|+.+.+++|..+.+..... .......|+.+.+.+|+.+.+..
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~------- 418 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT------- 418 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-------
Confidence 78999999888765532 2224568899999999998877762211 22345678888889998766653
Q ss_pred ccceeEecccceEecCCCCCcc
Q 047829 382 AEDCIVFRKLEYLGLDCLPSLT 403 (407)
Q Consensus 382 ~~~~~~~~~L~~L~l~~cp~l~ 403 (407)
.+.+..+++|+.+++.+|.+++
T Consensus 419 Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 419 LEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred HHHHhhCcccceeeeechhhhh
Confidence 2455678888888888876654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.22 E-value=2.8e-12 Score=126.91 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=87.5
Q ss_pred ccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCccccc
Q 047829 269 QHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLL 348 (407)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 348 (407)
++.++.+.++++|+.|+|++ +.+..+|...+.. +..|+.|+++++ +++.+|..+..++.|++|...+ +.+...|
T Consensus 373 d~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~k---le~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP 446 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRK---LEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP 446 (1081)
T ss_pred ccchhhhccccceeeeeecc-cccccCCHHHHhc---hHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech
Confidence 35566778889999999999 6788888776654 888999999985 6888998888899999998866 5666653
Q ss_pred CchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCCc
Q 047829 349 TLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSL 402 (407)
Q Consensus 349 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l 402 (407)
. ...++.|+.++++.+ .+..+.. +....+ |+|++||+++.+++
T Consensus 447 --e-~~~l~qL~~lDlS~N-~L~~~~l------~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 447 --E-LAQLPQLKVLDLSCN-NLSEVTL------PEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred --h-hhhcCcceEEecccc-hhhhhhh------hhhCCC-cccceeeccCCccc
Confidence 2 346889999998654 6666531 112212 79999999988753
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.21 E-value=7.1e-13 Score=119.73 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=98.7
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecc--------cccccccC
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEE--------GELYHREG 88 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~--------~~~~~~~~ 88 (407)
+.+|..|.+.+ .+++.++.... .++.|++||...+ -++.+|..++.+.+|+-|++...+- |..+...-
T Consensus 159 ~~~l~~l~~~~-n~l~~l~~~~i--~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh 234 (565)
T KOG0472|consen 159 LSKLSKLDLEG-NKLKALPENHI--AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH 234 (565)
T ss_pred HHHHHHhhccc-cchhhCCHHHH--HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH
Confidence 45677777777 46777776643 3788888888877 7788888888888888888864221 11111111
Q ss_pred cchhhHHHHHHhhc-CCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEc
Q 047829 89 NLNSTIQKCYKEMI-GFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVR 167 (407)
Q Consensus 89 ~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (407)
--.+.|+.+|+++. ++++|.+||+.++. ++..+... ..+++|.+|+++++... .+|.. ++++ +|+.|-+.
T Consensus 235 ~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~----clLrsL~rLDlSNN~is-~Lp~s--Lgnl-hL~~L~le 305 (565)
T KOG0472|consen 235 VGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI----CLLRSLERLDLSNNDIS-SLPYS--LGNL-HLKFLALE 305 (565)
T ss_pred hcccHHHhhHHHHhcccccceeeeccccc-cccCchHH----HHhhhhhhhcccCCccc-cCCcc--cccc-eeeehhhc
Confidence 11246778888876 88899999999887 66655544 45788999999986654 45655 7888 88888887
Q ss_pred ccc
Q 047829 168 NCD 170 (407)
Q Consensus 168 ~~~ 170 (407)
|++
T Consensus 306 GNP 308 (565)
T KOG0472|consen 306 GNP 308 (565)
T ss_pred CCc
Confidence 764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=8.4e-11 Score=119.05 Aligned_cols=254 Identities=16% Similarity=0.058 Sum_probs=154.5
Q ss_pred cceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHH
Q 047829 20 LKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK 99 (407)
Q Consensus 20 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 99 (407)
-..|+++++ +++.+|... .++|+.|++.++ .++.+|. ..++|++|++.+ +.+..+|.
T Consensus 203 ~~~LdLs~~-~LtsLP~~l----~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~--------------N~LtsLP~ 259 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCL----PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSG--------------NQLTSLPV 259 (788)
T ss_pred CcEEEcCCC-CCCcCCcch----hcCCCEEEccCC-cCCCCCC---CCCCCcEEEecC--------------CccCcccC
Confidence 345666664 566665542 257788888877 6777773 357788888854 12222332
Q ss_pred hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccC
Q 047829 100 EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLE 179 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 179 (407)
..++|++|+++++. ++.++ ..+.+|+.|.+.+|.. +.++. ..++|+.|++++| .+..++.
T Consensus 260 ---lp~sL~~L~Ls~N~-L~~Lp-------~lp~~L~~L~Ls~N~L-t~LP~-----~p~~L~~LdLS~N-~L~~Lp~-- 319 (788)
T PRK15387 260 ---LPPGLLELSIFSNP-LTHLP-------ALPSGLCKLWIFGNQL-TSLPV-----LPPGLQELSVSDN-QLASLPA-- 319 (788)
T ss_pred ---cccccceeeccCCc-hhhhh-------hchhhcCEEECcCCcc-ccccc-----cccccceeECCCC-ccccCCC--
Confidence 13567788877765 33322 1235677888877643 33332 2367888888876 3443321
Q ss_pred CccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccccc
Q 047829 180 ELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSE 259 (407)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 259 (407)
...+|+.|.+.++ .+..++. .+.+|+.|++++ ++++.++.. ..+|+.|+++++. +
T Consensus 320 -----------lp~~L~~L~Ls~N-~L~~LP~------lp~~Lq~LdLS~-N~Ls~LP~l-----p~~L~~L~Ls~N~-L 374 (788)
T PRK15387 320 -----------LPSELCKLWAYNN-QLTSLPT------LPSGLQELSVSD-NQLASLPTL-----PSELYKLWAYNNR-L 374 (788)
T ss_pred -----------CcccccccccccC-ccccccc------cccccceEecCC-CccCCCCCC-----Ccccceehhhccc-c
Confidence 1246777777664 3443321 124788888876 466665431 4577777776543 2
Q ss_pred chhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEec
Q 047829 260 ENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVS 339 (407)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 339 (407)
..++ ...++|+.|++++ +.++.+|.. .++|+.|+++++. +..+|.. ..+|+.|+++
T Consensus 375 ~~LP------------~l~~~L~~LdLs~-N~Lt~LP~l-------~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 375 TSLP------------ALPSGLKELIVSG-NRLTSLPVL-------PSELKELMVSGNR-LTSLPML---PSGLLSLSVY 430 (788)
T ss_pred ccCc------------ccccccceEEecC-CcccCCCCc-------ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhc
Confidence 2221 1135788899987 456666643 4678899998864 6667642 3578888888
Q ss_pred cCcCcccccCchhhhccccCCEEEEeccc
Q 047829 340 KCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 340 ~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+ +.++.++ .. ...+++|+.|++++++
T Consensus 431 ~-NqLt~LP-~s-l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 431 R-NQLTRLP-ES-LIHLSSETTVNLEGNP 456 (788)
T ss_pred c-CcccccC-hH-HhhccCCCeEECCCCC
Confidence 7 5677663 33 4567889999998874
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=2.8e-10 Score=115.28 Aligned_cols=238 Identities=18% Similarity=0.094 Sum_probs=163.6
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
++|+.|.+.+ .+++.+|.. .++|++|+++++ .++.+|. ..++|++|++.+ +.+..+
T Consensus 222 ~~L~~L~L~~-N~Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~---lp~sL~~L~Ls~--------------N~L~~L 277 (788)
T PRK15387 222 AHITTLVIPD-NNLTSLPAL-----PPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS--------------NPLTHL 277 (788)
T ss_pred cCCCEEEccC-CcCCCCCCC-----CCCCcEEEecCC-ccCcccC---cccccceeeccC--------------Cchhhh
Confidence 4689999988 467777643 489999999999 8888884 356899999954 334555
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
|.. ..+|+.|+++++. ++.++. ..++|+.|++++|... .++.. ..+|+.|.+++|. +..++.
T Consensus 278 p~l---p~~L~~L~Ls~N~-Lt~LP~-------~p~~L~~LdLS~N~L~-~Lp~l-----p~~L~~L~Ls~N~-L~~LP~ 339 (788)
T PRK15387 278 PAL---PSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDNQLA-SLPAL-----PSELCKLWAYNNQ-LTSLPT 339 (788)
T ss_pred hhc---hhhcCEEECcCCc-cccccc-------cccccceeECCCCccc-cCCCC-----cccccccccccCc-cccccc
Confidence 542 2568899998875 444322 2478999999987543 34321 2357888888763 333331
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
..++|+.|+++++ +++.++. .+++|+.|++.+ +.+..++. ...+|+.|+++++.
T Consensus 340 -------------lp~~Lq~LdLS~N-~Ls~LP~------lp~~L~~L~Ls~-N~L~~LP~-----l~~~L~~LdLs~N~ 393 (788)
T PRK15387 340 -------------LPSGLQELSVSDN-QLASLPT------LPSELYKLWAYN-NRLTSLPA-----LPSGLKELIVSGNR 393 (788)
T ss_pred -------------cccccceEecCCC-ccCCCCC------CCcccceehhhc-cccccCcc-----cccccceEEecCCc
Confidence 1257999999874 5655432 245788888876 45666543 14679999998764
Q ss_pred ccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEE
Q 047829 258 SEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLK 337 (407)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~ 337 (407)
+..+. ...++|+.|+++++ .+..+|.. +.+|+.|+++++ +++.+|..+..+++|+.++
T Consensus 394 -Lt~LP------------~l~s~L~~LdLS~N-~LssIP~l-------~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 394 -LTSLP------------VLPSELKELMVSGN-RLTSLPML-------PSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 451 (788)
T ss_pred -ccCCC------------CcccCCCEEEccCC-cCCCCCcc-------hhhhhhhhhccC-cccccChHHhhccCCCeEE
Confidence 32221 12358999999994 57777643 457888999875 4778998888999999999
Q ss_pred eccCcCccc
Q 047829 338 VSKCHGLIN 346 (407)
Q Consensus 338 l~~c~~l~~ 346 (407)
++++ .+..
T Consensus 452 Ls~N-~Ls~ 459 (788)
T PRK15387 452 LEGN-PLSE 459 (788)
T ss_pred CCCC-CCCc
Confidence 9984 4443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=1.3e-11 Score=122.25 Aligned_cols=245 Identities=17% Similarity=0.106 Sum_probs=136.0
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
.+|++++++.. .+..+|.-++.+++|+.++. ..+.+..+|..+...++|++|.+..+. ++.++.
T Consensus 241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~--------------n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~ 304 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPEWIGACANLEALNA--------------NHNRLVALPLRISRITSLVSLSAAYNE-LEYIPP 304 (1081)
T ss_pred ccceeeecchh-hhhcchHHHHhcccceEecc--------------cchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCC
Confidence 45555555555 55556655566666666666 335566777777777777777776665 554443
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhcccc-CCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNN-LGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID 202 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (407)
.. ..++.|+.|+++.+..- .+|. ..+..... |+.++.+.+ .++..+..++. .++.|+.|++.+
T Consensus 305 ~l----e~~~sL~tLdL~~N~L~-~lp~-~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~---------~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 305 FL----EGLKSLRTLDLQSNNLP-SLPD-NFLAVLNASLNTLNVSSN-KLSTLPSYEEN---------NHAALQELYLAN 368 (1081)
T ss_pred cc----cccceeeeeeehhcccc-ccch-HHHhhhhHHHHHHhhhhc-cccccccccch---------hhHHHHHHHHhc
Confidence 33 34677888888775443 2232 22222222 444554432 33333322211 246677777766
Q ss_pred cccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcc
Q 047829 203 LPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLR 282 (407)
Q Consensus 203 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~ 282 (407)
..--+..|. .+..+++||.|++++ +++..++ ......++.|++|.++++.. ..+. ...+.+++|+
T Consensus 369 N~Ltd~c~p---~l~~~~hLKVLhLsy-NrL~~fp-as~~~kle~LeeL~LSGNkL-~~Lp---------~tva~~~~L~ 433 (1081)
T KOG0618|consen 369 NHLTDSCFP---VLVNFKHLKVLHLSY-NRLNSFP-ASKLRKLEELEELNLSGNKL-TTLP---------DTVANLGRLH 433 (1081)
T ss_pred Ccccccchh---hhccccceeeeeecc-cccccCC-HHHHhchHHhHHHhcccchh-hhhh---------HHHHhhhhhH
Confidence 532222222 345788999999987 5666664 44566688888999987653 2222 1245566666
Q ss_pred eEecccccccccccccccccccccCCcCceeeccCccccc--cccccccccccCEEEeccCcC
Q 047829 283 FLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQK--LVPASWHLENLATLKVSKCHG 343 (407)
Q Consensus 283 ~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~ 343 (407)
.|...+ +.+..+|+. . .+++|+.+|++. ++++. +|..... |+|++|++++...
T Consensus 434 tL~ahs-N~l~~fPe~--~---~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHS-NQLLSFPEL--A---QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcC-Cceeechhh--h---hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 666665 455566622 1 256666666663 34442 2221111 6777777766443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.96 E-value=2.2e-09 Score=109.31 Aligned_cols=29 Identities=3% Similarity=0.208 Sum_probs=13.6
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEE
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQV 75 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 75 (407)
+.|+.|+++++ .++.+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~L 227 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYA 227 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEEC
Confidence 34555555554 4444543322 34555554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.91 E-value=3.8e-09 Score=107.65 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=152.7
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
.+...|++.+. .++.+|..+. ++|+.|++.+ +.+..+|..+. ++|++|+++++. ++.++.
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~--------------N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~ 237 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDN--------------NELKSLPENLQ--GNIKTLYANSNQ-LTSIPA 237 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecC--------------CCCCcCChhhc--cCCCEEECCCCc-cccCCh
Confidence 45678888887 7778886553 4788888854 23334554443 579999998775 544332
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDL 203 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (407)
....+|+.|.+++|... .+|.. +. ++|+.|++++| .+..++.. ..++|+.|+++++
T Consensus 238 ------~l~~~L~~L~Ls~N~L~-~LP~~--l~--s~L~~L~Ls~N-~L~~LP~~------------l~~sL~~L~Ls~N 293 (754)
T PRK15370 238 ------TLPDTIQEMELSINRIT-ELPER--LP--SALQSLDLFHN-KISCLPEN------------LPEELRYLSVYDN 293 (754)
T ss_pred ------hhhccccEEECcCCccC-cCChh--Hh--CCCCEEECcCC-ccCccccc------------cCCCCcEEECCCC
Confidence 22457889999887654 44332 22 47888988865 45444320 1257888888876
Q ss_pred ccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcce
Q 047829 204 PKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRF 283 (407)
Q Consensus 204 ~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~ 283 (407)
+++.++.. -+++|+.|++.++ .++.++... .++|+.|.+++|. ++.++. ...++|+.
T Consensus 294 -~Lt~LP~~-----lp~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~Ls~N~-Lt~LP~-----------~l~~sL~~ 350 (754)
T PRK15370 294 -SIRTLPAH-----LPSGITHLNVQSN-SLTALPETL----PPGLKTLEAGENA-LTSLPA-----------SLPPELQV 350 (754)
T ss_pred -ccccCccc-----chhhHHHHHhcCC-ccccCCccc----cccceeccccCCc-cccCCh-----------hhcCcccE
Confidence 45554321 1246888888764 555554322 4678888887764 222211 11358888
Q ss_pred EecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccC--chhhhccccCCE
Q 047829 284 LELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLT--LSTSESLVNLER 361 (407)
Q Consensus 284 L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~ 361 (407)
|+++++ .+..+|.. + .++|+.|++++|. +..+|+.+. +.|+.|++++ +.+..++. ......++.+..
T Consensus 351 L~Ls~N-~L~~LP~~-l-----p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 351 LDVSKN-QITVLPET-L-----PPTITTLDVSRNA-LTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred EECCCC-CCCcCChh-h-----cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccE
Confidence 888884 56666643 1 3578888888864 566775432 4688888887 45655532 112233467778
Q ss_pred EEEeccc
Q 047829 362 MKITDCK 368 (407)
Q Consensus 362 L~i~~c~ 368 (407)
+.+.+++
T Consensus 420 L~L~~Np 426 (754)
T PRK15370 420 IIVEYNP 426 (754)
T ss_pred EEeeCCC
Confidence 8887765
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=2.3e-09 Score=110.87 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=74.4
Q ss_pred ccCCccEEeecCCCc-ccccccc-ccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc
Q 047829 42 EFPSLERVSVTFCPD-MKTFSQG-ILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK 119 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~-l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 119 (407)
..++|+.|-+.+... +..++.. +..++.|++|++++ +.++..||..++.+-+|++|++++.. ++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~-------------~~~l~~LP~~I~~Li~LryL~L~~t~-I~ 608 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG-------------NSSLSKLPSSIGELVHLRYLDLSDTG-IS 608 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC-------------CCccCcCChHHhhhhhhhcccccCCC-cc
Confidence 456788888887753 5555543 45588888888853 33455677777777888888888876 66
Q ss_pred eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcc
Q 047829 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRN 168 (407)
Q Consensus 120 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 168 (407)
+.|.+. ..++.|.+|++..+.....+ .+....+++||+|.+..
T Consensus 609 ~LP~~l----~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 609 HLPSGL----GNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPR 651 (889)
T ss_pred ccchHH----HHHHhhheeccccccccccc--cchhhhcccccEEEeec
Confidence 655555 56778888888877666543 34466688888888865
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=1.4e-09 Score=101.46 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=67.5
Q ss_pred ccccCCccEEeecCCCc----cccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccC
Q 047829 40 TLEFPSLERVSVTFCPD----MKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYF 115 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~----l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 115 (407)
...+..|++|++++|.- ...++..+...++++++.+.+ ...+..+..+..++..+..+++|++|+++++
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~-------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL-------NETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccc-------cccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 34567799999999842 134666667778888888854 1111123344556666666788888888877
Q ss_pred CCcceeccCC-CCCccccCCceEEEEecCCCCCcCC--ccchhhcc-ccCCeeEEcccc
Q 047829 116 PRLKEIWHGQ-ALPVSFFNNLCKLVVDDCTNMSSAI--PVNLLRCL-NNLGWLEVRNCD 170 (407)
Q Consensus 116 ~~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~l-~~L~~L~l~~~~ 170 (407)
.--....... .+. .. ++|+.|++.+|....... ....+..+ ++|+.|++++|.
T Consensus 92 ~~~~~~~~~~~~l~-~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 92 ALGPDGCGVLESLL-RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred CCChhHHHHHHHHh-cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 6321111100 011 11 447777777765431100 01123344 666777777664
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-10 Score=91.90 Aligned_cols=157 Identities=22% Similarity=0.227 Sum_probs=99.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+.+.+.|.++. .++..+|.. ...+.+|++|++.++ +++++|.++.++++|+.|++.- +.+..
T Consensus 32 ~s~ITrLtLSH-NKl~~vppn--ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm--------------nrl~~ 93 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPN--IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM--------------NRLNI 93 (264)
T ss_pred hhhhhhhhccc-CceeecCCc--HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch--------------hhhhc
Confidence 44556667776 456666665 457788888888887 8888888888888888888832 23445
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
+|..+++++-|+.|+++.+. +.+......| -.+..|+.|++.++..- -+|+. ++++++|+.|.+..++-++-.-
T Consensus 94 lprgfgs~p~levldltynn-l~e~~lpgnf--f~m~tlralyl~dndfe-~lp~d--vg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNN-LNENSLPGNF--FYMTTLRALYLGDNDFE-ILPPD--VGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred CccccCCCchhhhhhccccc-cccccCCcch--hHHHHHHHHHhcCCCcc-cCChh--hhhhcceeEEeeccCchhhCcH
Confidence 77888888888888888655 4332221111 12456777777776543 23333 6777788888777765443221
Q ss_pred ccCCccccccccCCCCCcccEEecccccccccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
.+ + .+..|++|.+.+. .++.+
T Consensus 168 ei----------g-~lt~lrelhiqgn-rl~vl 188 (264)
T KOG0617|consen 168 EI----------G-DLTRLRELHIQGN-RLTVL 188 (264)
T ss_pred HH----------H-HHHHHHHHhcccc-eeeec
Confidence 11 1 2467777777764 34443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=4.5e-08 Score=91.27 Aligned_cols=94 Identities=15% Similarity=-0.003 Sum_probs=47.4
Q ss_pred ccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc--eeccC--CCCCccccCCceEEE
Q 047829 64 ILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK--EIWHG--QALPVSFFNNLCKLV 139 (407)
Q Consensus 64 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~--~~~~~~~l~~L~~L~ 139 (407)
+..+.+|+++++.++ +-.+.....++..+...+++++|+++++.--. ..+.. ..+ ..+++|+.|.
T Consensus 19 ~~~l~~L~~l~l~~~---------~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~ 87 (319)
T cd00116 19 LPKLLCLQVLRLEGN---------TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL--TKGCGLQELD 87 (319)
T ss_pred HHHHhhccEEeecCC---------CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH--HhcCceeEEE
Confidence 344556888888541 11122344566666667778888877654210 11100 001 1245777777
Q ss_pred EecCCCCCcCCccchhhcccc---CCeeEEcccc
Q 047829 140 VDDCTNMSSAIPVNLLRCLNN---LGWLEVRNCD 170 (407)
Q Consensus 140 l~~~~~~~~~~~~~~~~~l~~---L~~L~l~~~~ 170 (407)
+.+|...... ...+..+.+ |++|++++|.
T Consensus 88 l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 88 LSDNALGPDG--CGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred ccCCCCChhH--HHHHHHHhccCcccEEEeeCCc
Confidence 7766554221 112333333 7777776653
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.8e-08 Score=89.90 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=90.1
Q ss_pred ccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccc
Q 047829 131 FFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFC 210 (407)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 210 (407)
.+.+|++..++++.. ...+...-.+.+++++.|+++.+ -+..+... ..+...||+|+.|+++... +...+
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v-------~~i~eqLp~Le~LNls~Nr-l~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN-LFHNWFPV-------LKIAEQLPSLENLNLSSNR-LSNFI 188 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhh-hHHhHHHH-------HHHHHhcccchhccccccc-ccCCc
Confidence 455666666665432 22222133566667777776653 12211110 1112245667777666532 22212
Q ss_pred cCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc
Q 047829 211 NFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH 290 (407)
Q Consensus 211 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 290 (407)
... .-..+++|+.|.+++|. ++.-...+.+..+|+|+.|+++.+..+... ..+...+..|++|+|++.+
T Consensus 189 ~s~-~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~---------~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 189 SSN-TTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIK---------ATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ccc-chhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccccccee---------cchhhhhhHHhhccccCCc
Confidence 211 12246677777777764 322222334445777777777666422110 1112334567777777633
Q ss_pred ccccccccccccccccCCcCceeeccCcccc-ccccc-----cccccccCEEEeccCcCccc
Q 047829 291 KVQHLWKENAESNKVFANLKSPEISECSKLQ-KLVPA-----SWHLENLATLKVSKCHGLIN 346 (407)
Q Consensus 291 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~-----~~~~~~L~~L~l~~c~~l~~ 346 (407)
+..++.. ....+++.|+.|.++.|.--. ..|+. ...+++|+.|++.. +.+.+
T Consensus 258 -li~~~~~--~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~ 315 (505)
T KOG3207|consen 258 -LIDFDQG--YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRD 315 (505)
T ss_pred -ccccccc--cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Ccccc
Confidence 2233211 112346666666666554211 12221 24467777777766 34433
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.40 E-value=1e-08 Score=82.69 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=108.5
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.+.....|.++++ ++..+|..|..+.+|+.|++ .++-++.+|..+.++++|++|+++.+. +...
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~--------------~nnqie~lp~~issl~klr~lnvgmnr-l~~l 94 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNL--------------SNNQIEELPTSISSLPKLRILNVGMNR-LNIL 94 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcHHHhhhhhhhhc--------------ccchhhhcChhhhhchhhhheecchhh-hhcC
Confidence 4567778889998 88899999999999999999 557888999999999999999988554 5555
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
+.+. ++|+.|+.|++..+.......| +.+-.+..|+.|-++.++ .+.++.. ++ .+++|+.|.+.
T Consensus 95 prgf----gs~p~levldltynnl~e~~lp-gnff~m~tlralyl~dnd-fe~lp~d---------vg-~lt~lqil~lr 158 (264)
T KOG0617|consen 95 PRGF----GSFPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGDND-FEILPPD---------VG-KLTNLQILSLR 158 (264)
T ss_pred cccc----CCCchhhhhhccccccccccCC-cchhHHHHHHHHHhcCCC-cccCChh---------hh-hhcceeEEeec
Confidence 5554 6688888898888766554333 345566777777777653 3332211 11 24666766666
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccC
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
+.. +-+++. .++.+.+|++|+|.+ ++++.++|
T Consensus 159 dnd-ll~lpk---eig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 159 DND-LLSLPK---EIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred cCc-hhhCcH---HHHHHHHHHHHhccc-ceeeecCh
Confidence 542 222222 233566777777765 45655544
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.6e-09 Score=93.49 Aligned_cols=164 Identities=15% Similarity=0.034 Sum_probs=75.1
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
+.+|+.|.+.+...-.. ....+.+-.+|+.++++.|+.++....- -.+. ..+.|.+|++++|.-.++...
T Consensus 209 C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~~-------ll~~-scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENALQ-------LLLS-SCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHHH-------HHHH-hhhhHhhcCchHhhccchhhh
Confidence 55666666665443322 1222445556666666666655442210 0000 124556666666543333211
Q ss_pred CCCccccCCCccEEeEecCCCC-ccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc
Q 047829 212 FTGNIIELPMFWSLTIENCPDM-ETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH 290 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 290 (407)
.. ..+--++|+.|++++|.+- ..--......++++|.+|++++|.++.+- .+..+..|+.|+.|.++.|.
T Consensus 279 v~-V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--------~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 279 VA-VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--------CFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HH-HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--------HHHHHHhcchheeeehhhhc
Confidence 11 1112246666666666421 11111223455666666666666665532 11224456666666666654
Q ss_pred ccccccccccccccccCCcCceeeccC
Q 047829 291 KVQHLWKENAESNKVFANLKSPEISEC 317 (407)
Q Consensus 291 ~l~~l~~~~~~~~~~~~~L~~L~l~~c 317 (407)
.+ +++.+-.+...|+|.+|++.+|
T Consensus 350 ~i---~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 350 DI---IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CC---ChHHeeeeccCcceEEEEeccc
Confidence 32 2222222233555555555554
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3e-08 Score=86.93 Aligned_cols=174 Identities=14% Similarity=0.068 Sum_probs=115.0
Q ss_pred HHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 95 QKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 95 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
..+...+..+.+|+.|.+.+..--.++.... ..=.+|++|+++.|..++.....-++..++.|..|++++|.....
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i----AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDDPIVNTI----AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCcHHHHHH----hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 3455566777888888888776222222222 113789999999999887655556788999999999999965443
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
.... ...++ =++|..|+++++..--.......-...+|+|.+|++++|..++......+ ..++.|++|.++
T Consensus 276 ~Vtv-----~V~hi---se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSls 346 (419)
T KOG2120|consen 276 KVTV-----AVAHI---SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLS 346 (419)
T ss_pred hhhH-----HHhhh---chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-Hhcchheeeehh
Confidence 3211 11111 16788899988754211111111133689999999999988876443333 348999999999
Q ss_pred cccccchhhhccccccccccccccCCcceEecccc
Q 047829 255 KLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
.|..+..- -+-.+...|+|.+|++.+|
T Consensus 347 RCY~i~p~--------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPE--------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChH--------HeeeeccCcceEEEEeccc
Confidence 99876421 1122567899999999985
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=8.2e-06 Score=76.61 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=65.8
Q ss_pred ccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccc
Q 047829 157 CLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETF 236 (407)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~ 236 (407)
.+++++.|++++| .++.++. .-++|++|.+.+|..+..++.. -+++|+.|.+.+|.++..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-------------LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-------------LPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-------------CCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCccccccc
Confidence 3456666666666 4444331 1135666666666666554321 1346777777766655443
Q ss_pred cCcccccccCCCceeecccccccchhhhccccccccccccc-cCCcceEecccccccc--cccccccccccccCCcCcee
Q 047829 237 ISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVT-FPQLRFLELSRLHKVQ--HLWKENAESNKVFANLKSPE 313 (407)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~l~--~l~~~~~~~~~~~~~L~~L~ 313 (407)
.++|++|++.. ..... +.. .++|+.|.+.+..... .++ ..+ .++|+.|.
T Consensus 111 --------P~sLe~L~L~~-n~~~~-------------L~~LPssLk~L~I~~~n~~~~~~lp-~~L-----PsSLk~L~ 162 (426)
T PRK15386 111 --------PESVRSLEIKG-SATDS-------------IKNVPNGLTSLSINSYNPENQARID-NLI-----SPSLKTLS 162 (426)
T ss_pred --------ccccceEEeCC-CCCcc-------------cccCcchHhheeccccccccccccc-ccc-----CCcccEEE
Confidence 23455555532 11111 112 2356666664322111 111 111 35677777
Q ss_pred eccCccccccccccccccccCEEEecc
Q 047829 314 ISECSKLQKLVPASWHLENLATLKVSK 340 (407)
Q Consensus 314 l~~c~~l~~l~~~~~~~~~L~~L~l~~ 340 (407)
+.+|..+. +|..+. .+|+.|.++.
T Consensus 163 Is~c~~i~-LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 163 LTGCSNII-LPEKLP--ESLQSITLHI 186 (426)
T ss_pred ecCCCccc-Cccccc--ccCcEEEecc
Confidence 77776542 332222 4777777765
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.06 E-value=1.1e-06 Score=80.20 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=63.9
Q ss_pred cccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchh
Q 047829 274 EKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLST 352 (407)
Q Consensus 274 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~ 352 (407)
.+..+++|+.+++++ +.++.+...+|.. ...++.|.+..+ ++..+.. .+..+..|++|++++ +.++.+. .+.
T Consensus 269 cf~~L~~L~~lnlsn-N~i~~i~~~aFe~---~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~-~~a 341 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSN-NKITRIEDGAFEG---AAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVA-PGA 341 (498)
T ss_pred HHhhcccceEeccCC-Cccchhhhhhhcc---hhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEe-ccc
Confidence 355688999999998 7888888888876 788999999875 3454432 345678999999998 6776663 344
Q ss_pred hhccccCCEEEEec
Q 047829 353 SESLVNLERMKITD 366 (407)
Q Consensus 353 ~~~l~~L~~L~i~~ 366 (407)
+..+.+|.+|.+..
T Consensus 342 F~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLS 355 (498)
T ss_pred ccccceeeeeehcc
Confidence 56677888887643
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.03 E-value=2.9e-06 Score=70.86 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=12.0
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
.+++.|++.++ .+.... .....+.+|++|++++| .++++. ++..+++|++|.+.
T Consensus 19 ~~~~~L~L~~n-~I~~Ie--~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 19 VKLRELNLRGN-QISTIE--NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLS 72 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--
T ss_pred ccccccccccc-cccccc--chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccC
Confidence 35677777764 233221 10114567777777777 666654 45666777777774
No 31
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.96 E-value=5.4e-07 Score=88.96 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=64.8
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc-cccceeeccCCccccccccCCCCCcccEEeccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC-DSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFC 210 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 210 (407)
+++|+.+.+.+|..+.+.........+++|+.|++++| ......+... .......++|+.|++..+..+.+.-
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL------LLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh------hhhhhhcCCcCccchhhhhccCchh
Confidence 56677777777666654222233556677777777663 2211111000 0011123566667766665443321
Q ss_pred cCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc
Q 047829 211 NFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE 260 (407)
Q Consensus 211 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 260 (407)
... ....+++|+.|.+.+|..++......++..+++|++|++++|..+.
T Consensus 261 l~~-l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 261 LSA-LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHH-HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 000 0112667777777777666655555566667777777777777653
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.6e-06 Score=77.80 Aligned_cols=209 Identities=13% Similarity=0.083 Sum_probs=119.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCC--ccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCP--DMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~--~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
-+.+|+...|.+++ ....+...+...|+.++.||++.+= +...+...+.++|+|+.|+++..+-.. .
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~----------~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN----------F 187 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC----------C
Confidence 47888888888863 4433333345678999999999862 222455556789999999996411110 0
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcc--eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLK--EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDS 171 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (407)
+...-. ..+++|+.|.++.|. ++ ++-... ..||+|..|.+.+|..... ......-+..|+.|++++++.
T Consensus 188 ~~s~~~--~~l~~lK~L~l~~CG-ls~k~V~~~~----~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 188 ISSNTT--LLLSHLKQLVLNSCG-LSWKDVQWIL----LTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred ccccch--hhhhhhheEEeccCC-CCHHHHHHHH----HhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcc
Confidence 100100 145788999999887 44 111111 3478899999988853321 112234556788999998764
Q ss_pred cceeeccCCccccccccCCCCCcccEEeccccccccccccCCC----ccccCCCccEEeEecCCCCccccCcccccccCC
Q 047829 172 LEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTG----NIIELPMFWSLTIENCPDMETFISNSTSILHMT 247 (407)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 247 (407)
+.. .+.. ....||.|+.|.++.+ ++.++..... -...|++|+.|.+.. +.+..+....-.+.+++
T Consensus 259 i~~-~~~~--------~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 259 IDF-DQGY--------KVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLEN 327 (505)
T ss_pred ccc-cccc--------ccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccch
Confidence 433 2111 1124678888777754 2322211111 123578899988876 34444433222344667
Q ss_pred Cceeeccc
Q 047829 248 ADNKEPQK 255 (407)
Q Consensus 248 L~~L~l~~ 255 (407)
|++|.+..
T Consensus 328 lk~l~~~~ 335 (505)
T KOG3207|consen 328 LKHLRITL 335 (505)
T ss_pred hhhhhccc
Confidence 77776543
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=6.4e-05 Score=70.74 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=86.2
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++++.|++++| .++.++. -+++|+.|.+.+|..++.++. .+ .++|++|.+++|..+..+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~-~L---P~nLe~L~Ls~Cs~L~sL---------- 110 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV------LPNELTEITIENCNNLTTLPG-SI---PEGLEKLTVCHCPEISGL---------- 110 (426)
T ss_pred cCCCEEEeCCC-CCcccCC------CCCCCcEEEccCCCCcccCCc-hh---hhhhhheEccCccccccc----------
Confidence 78889999988 6776641 245799999999999877653 21 568999999999766432
Q ss_pred ccccccCCcceEeccc--ccccccccccccccccccCCcCceeeccCcccc--ccccccccccccCEEEeccCcCccccc
Q 047829 273 DEKVTFPQLRFLELSR--LHKVQHLWKENAESNKVFANLKSPEISECSKLQ--KLVPASWHLENLATLKVSKCHGLINLL 348 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~--~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~~~ 348 (407)
.++|+.|++.. +..+..+ .++|+.|.+.+..... .+|. .-.++|++|.+++|..+. +
T Consensus 111 -----P~sLe~L~L~~n~~~~L~~L----------PssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-L- 171 (426)
T PRK15386 111 -----PESVRSLEIKGSATDSIKNV----------PNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-L- 171 (426)
T ss_pred -----ccccceEEeCCCCCcccccC----------cchHhheecccccccccccccc--ccCCcccEEEecCCCccc-C-
Confidence 24788888764 2223333 3467788875433211 1111 112589999999988653 2
Q ss_pred CchhhhccccCCEEEEecc
Q 047829 349 TLSTSESLVNLERMKITDC 367 (407)
Q Consensus 349 ~~~~~~~l~~L~~L~i~~c 367 (407)
+..++ .+|+.|.+..+
T Consensus 172 P~~LP---~SLk~L~ls~n 187 (426)
T PRK15386 172 PEKLP---ESLQSITLHIE 187 (426)
T ss_pred ccccc---ccCcEEEeccc
Confidence 22222 58889988764
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.82 E-value=1.5e-06 Score=85.81 Aligned_cols=120 Identities=22% Similarity=0.243 Sum_probs=54.2
Q ss_pred cCCccEEeecCCCcccc--ccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 43 FPSLERVSVTFCPDMKT--FSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
++.|+.|.+.+|..+.. +-.....+++|++|++.++ +..+. ......+.....+++|+.|+++++..+.+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~------~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC--CLLIT------LSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc--ccccc------cchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 56666666666655554 3334455666666666431 00000 00000111223345566666665554433
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccc
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSL 172 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (407)
.-... +. ..+++|+.|.+.+|..+++.........+++|+.|++++|..+
T Consensus 259 ~~l~~-l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSA-LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHH-HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 22111 11 1245566666555554433323333445555666666655443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.76 E-value=2.1e-05 Score=65.74 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=46.7
Q ss_pred cCCCceeecccccccchhhhcccccccccccc-ccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc
Q 047829 245 HMTADNKEPQKLKSEENLLVADQIQHLFDEKV-TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL 323 (407)
Q Consensus 245 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l 323 (407)
+..+++|++.++.--. ++..+ .+.+|+.|++++ +.++.+.. ++ .++.|+.|+++++ .++.+
T Consensus 18 ~~~~~~L~L~~n~I~~-----------Ie~L~~~l~~L~~L~Ls~-N~I~~l~~--l~---~L~~L~~L~L~~N-~I~~i 79 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----------IENLGATLDKLEVLDLSN-NQITKLEG--LP---GLPRLKTLDLSNN-RISSI 79 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TT-S--S--TT---------TT--EEE--SS----S-
T ss_pred cccccccccccccccc-----------ccchhhhhcCCCEEECCC-CCCccccC--cc---ChhhhhhcccCCC-CCCcc
Confidence 4567888887764211 11143 478999999998 45666542 22 3889999999875 45666
Q ss_pred cccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 324 VPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 324 ~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
.+.+ ..+|+|++|++++ +.+.++-.-.....+++|+.|++.++|--+.-. =....+..+|+|+.||-.
T Consensus 80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~-----YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN-----YRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTT-----HHHHHHHH-TT-SEETTE
T ss_pred ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhh-----HHHHHHHHcChhheeCCE
Confidence 4434 3689999999987 677666433445678999999999886422110 001224567778777643
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.59 E-value=0.00012 Score=49.82 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=27.7
Q ss_pred CcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 308 NLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 308 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
+|+.|++++| +++.+|+ .+..+++|++|++++ +.++.+.+ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEET-TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCH-HHHcCCCCCCEEeCcCC
Confidence 4455555554 3444442 334455555555553 34444422 23345555555555554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.59 E-value=0.0001 Score=50.20 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=36.8
Q ss_pred CCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccC
Q 047829 279 PQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKC 341 (407)
Q Consensus 279 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 341 (407)
|+|+.|+++++ .+..++.+.+.. +++|+.|+++++ .++.+++ .+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~---l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSN---LPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTT---GTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcC---CCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 46677777764 666666665554 677777777754 3455543 4466777777777664
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.39 E-value=5.4e-06 Score=75.75 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=64.0
Q ss_pred cceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHHHHH
Q 047829 20 LKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCY 98 (407)
Q Consensus 20 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 98 (407)
-..++|.. ..++.+|... ...+++||.||++++ .+..| |..+..+++|-.|.+.+ ++.|+.+|
T Consensus 69 tveirLdq-N~I~~iP~~a-F~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg-------------~NkI~~l~ 132 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGA-FKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYG-------------NNKITDLP 132 (498)
T ss_pred ceEEEecc-CCcccCChhh-ccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhc-------------CCchhhhh
Confidence 34455555 4566666654 557788888888887 45443 33444466666666632 14455666
Q ss_pred Hh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcc
Q 047829 99 KE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRN 168 (407)
Q Consensus 99 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 168 (407)
.. +.++..++-|.+.-+. +.-..... | ..++++..|.++++..- . ...+.+..+..++.+++..
T Consensus 133 k~~F~gL~slqrLllNan~-i~Cir~~a-l--~dL~~l~lLslyDn~~q-~-i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANH-INCIRQDA-L--RDLPSLSLLSLYDNKIQ-S-ICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhHhhhHHHHHHHhcChhh-hcchhHHH-H--HHhhhcchhcccchhhh-h-hccccccchhccchHhhhc
Confidence 43 3455556655555433 11000000 1 22455666666654332 1 2223344555555555543
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=6e-05 Score=76.64 Aligned_cols=87 Identities=13% Similarity=0.218 Sum_probs=47.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
-||+|++|.+.+- .+..-.....+.+||+|+.||++++ .+..+ .+++++.+||.|.+++ ++-.-.
T Consensus 146 ~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrn------------Le~e~~ 210 (699)
T KOG3665|consen 146 MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRN------------LEFESY 210 (699)
T ss_pred hCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccC------------CCCCch
Confidence 3667777766663 2221112222456777777777776 55555 4667777777777743 110000
Q ss_pred HHHHhhcCCCCccEEEeccCCC
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPR 117 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~ 117 (407)
.-..++..+++|++||||....
T Consensus 211 ~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 211 QDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hhHHHHhcccCCCeeecccccc
Confidence 1112345567777777776553
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.35 E-value=9.5e-05 Score=65.46 Aligned_cols=109 Identities=25% Similarity=0.266 Sum_probs=70.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
..-.|+++.|+++. +.+..+.. + ..+++|..|+++++ .+..+.-+-..+.+.++|.+++ +.++++ +...
T Consensus 303 vKL~Pkir~L~lS~-N~i~~v~n--L---a~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L---SGL~ 371 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQ-NRIRTVQN--L---AELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETL---SGLR 371 (490)
T ss_pred hhhccceeEEeccc-cceeeehh--h---hhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhh---hhhH
Confidence 34468888888887 34444433 2 23778888888874 3444444445577888888887 566665 3455
Q ss_pred ccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCC
Q 047829 355 SLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS 401 (407)
Q Consensus 355 ~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~ 401 (407)
.+-+|..|++.++ .+.++. +...+..+|.|+++.+.+.|-
T Consensus 372 KLYSLvnLDl~~N-~Ie~ld------eV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 372 KLYSLVNLDLSSN-QIEELD------EVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhheecccccc-chhhHH------HhcccccccHHHHHhhcCCCc
Confidence 6678888888776 444432 114566788888888877764
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.24 E-value=4.7e-05 Score=67.34 Aligned_cols=82 Identities=27% Similarity=0.312 Sum_probs=38.6
Q ss_pred CCCccEEEeccCCCcc-eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcc
Q 047829 104 FRDIWYLQLSYFPRLK-EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELS 182 (407)
Q Consensus 104 ~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (407)
+++|.+|+++++.--+ +.|+.. +.|.+.|.+.++.. .++ ..++++-+|..|++++++ ++..-...+
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~K------LGNIKtL~La~N~i-E~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV~~-- 394 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLK------LGNIKTLKLAQNKI-ETL---SGLRKLYSLVNLDLSSNQ-IEELDEVNH-- 394 (490)
T ss_pred cccceEeecccchhHhhhhhHhh------hcCEeeeehhhhhH-hhh---hhhHhhhhheeccccccc-hhhHHHhcc--
Confidence 3455555555544111 223322 56666666666432 221 225666666666666642 222211111
Q ss_pred ccccccCCCCCcccEEeccccc
Q 047829 183 AKEEHIGPLFPSLSWLRLIDLP 204 (407)
Q Consensus 183 ~~~~~~~~~~~~L~~L~l~~~~ 204 (407)
++ .+|.|+.+.+.+.+
T Consensus 395 -----IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 395 -----IG-NLPCLETLRLTGNP 410 (490)
T ss_pred -----cc-cccHHHHHhhcCCC
Confidence 11 24666666666554
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.08 E-value=0.00018 Score=65.01 Aligned_cols=180 Identities=14% Similarity=0.042 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcce--eccCCCCCccccCCceEEEEec--CCCCCc-CC-----ccchhhccccCCe
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKE--IWHGQALPVSFFNNLCKLVVDD--CTNMSS-AI-----PVNLLRCLNNLGW 163 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~l~~--~~~~~~-~~-----~~~~~~~l~~L~~ 163 (407)
.+.+.+.+-.+..+.+|++++++--.. -|....+ ..-++|+..++++ .....+ ++ ....+...|+|+.
T Consensus 19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L--~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 19 EKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVL--ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred hhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHH--hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 344555566777788888887762111 1111101 1124555555543 111111 11 1123445667888
Q ss_pred eEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC-----------CCccccCCCccEEeEecCCC
Q 047829 164 LEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF-----------TGNIIELPMFWSLTIENCPD 232 (407)
Q Consensus 164 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-----------~~~~~~~~~L~~L~l~~c~~ 232 (407)
+++|.|.--. .+...+...+.. ...|+.|.+.+|. +...-.. ..-..+.+.|+.+.+.+ ++
T Consensus 97 ldLSDNA~G~-----~g~~~l~~ll~s-~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nr 168 (382)
T KOG1909|consen 97 LDLSDNAFGP-----KGIRGLEELLSS-CTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NR 168 (382)
T ss_pred eeccccccCc-----cchHHHHHHHHh-ccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cc
Confidence 8888753111 111111111222 2677777777763 2110000 00123456777777765 33
Q ss_pred CccccC---cccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccc
Q 047829 233 METFIS---NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSR 288 (407)
Q Consensus 233 l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 288 (407)
+...+. ...++..++|+.+.++.+..... ++......+..+++|+.|++.+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~e-----G~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPE-----GVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCc-----hhHHHHHHHHhCCcceeeeccc
Confidence 433322 12244556666666655432211 1111222345566777777766
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00017 Score=73.34 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=89.0
Q ss_pred CCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccc
Q 047829 104 FRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSA 183 (407)
Q Consensus 104 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 183 (407)
-.+|++|+|++...+...|... +. ..||+|+.|.+.+-....+- .......+|+|..|||++++ ++.+ .+.+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS- 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTN-ISNL---SGIS- 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecchh-HHHHhhccCccceeecCCCC-ccCc---HHHh-
Confidence 3679999999988887778544 33 45899999999884443221 22445789999999999964 3333 2222
Q ss_pred cccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcccc-Cc---ccccccCCCceeeccccccc
Q 047829 184 KEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFI-SN---STSILHMTADNKEPQKLKSE 259 (407)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~---~~~~~l~~L~~L~l~~~~~l 259 (407)
.+++|+.|.+.+++--. +........+.+|+.|++++-....... .. .-...+|+|+.|+.++...-
T Consensus 193 -------~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 193 -------RLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -------ccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 35788888888765322 1111134568899999998744332220 00 00123788888888765544
Q ss_pred ch
Q 047829 260 EN 261 (407)
Q Consensus 260 ~~ 261 (407)
.+
T Consensus 264 ~~ 265 (699)
T KOG3665|consen 264 EE 265 (699)
T ss_pred HH
Confidence 33
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.89 E-value=0.001 Score=63.94 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=109.8
Q ss_pred ccCCccEEeecCCCccccccccccCCC-CcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTP-KLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
.+..++.|++.+. .+.++|...+.+. +|+.|++.. +.+..++..+..+++|+.|+++.++ +.+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~--------------N~i~~l~~~~~~l~~L~~L~l~~N~-l~~ 177 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD--------------NKIESLPSPLRNLPNLKNLDLSFND-LSD 177 (394)
T ss_pred cccceeEEecCCc-ccccCccccccchhhcccccccc--------------cchhhhhhhhhccccccccccCCch-hhh
Confidence 4577888888887 7778887777774 899999854 5667777778888999999999887 443
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEec
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRL 200 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 200 (407)
.+... ...++|+.|.++++.. .+++.. +.....|+.+.++++..+..+.... .+.++..+.+
T Consensus 178 l~~~~----~~~~~L~~L~ls~N~i-~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~-----------~~~~l~~l~l 239 (394)
T COG4886 178 LPKLL----SNLSNLNNLDLSGNKI-SDLPPE--IELLSALEELDLSNNSIIELLSSLS-----------NLKNLSGLEL 239 (394)
T ss_pred hhhhh----hhhhhhhheeccCCcc-ccCchh--hhhhhhhhhhhhcCCcceecchhhh-----------hccccccccc
Confidence 33221 1468888999988654 444443 2345558888888774333222111 1244444443
Q ss_pred cccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccccc
Q 047829 201 IDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSE 259 (407)
Q Consensus 201 ~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 259 (407)
.+.. +..+.. ....++.++.|++.++ .+..+.. ...+.+++.|++++....
T Consensus 240 ~~n~-~~~~~~---~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 240 SNNK-LEDLPE---SIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred CCce-eeeccc---hhccccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 3332 221111 2335667888888763 4555443 234778888888776544
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.83 E-value=0.0012 Score=63.58 Aligned_cols=191 Identities=15% Similarity=0.127 Sum_probs=105.3
Q ss_pred EEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCC-CccEEEeccCCCcceeccCCC
Q 047829 48 RVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFR-DIWYLQLSYFPRLKEIWHGQA 126 (407)
Q Consensus 48 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~ 126 (407)
.++.... .+..-+..+..++.++.|.+. +..+.+++....... +|+.|++++.. ++..+...
T Consensus 97 ~l~~~~~-~~~~~~~~~~~~~~l~~L~l~--------------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~- 159 (394)
T COG4886 97 SLDLNLN-RLRSNISELLELTNLTSLDLD--------------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL- 159 (394)
T ss_pred eeecccc-ccccCchhhhcccceeEEecC--------------CcccccCccccccchhhcccccccccc-hhhhhhhh-
Confidence 3455544 332223344555677777773 344555666666664 88888888877 44331111
Q ss_pred CCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccc
Q 047829 127 LPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKL 206 (407)
Q Consensus 127 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 206 (407)
..+++|+.|.+.+|... +++.. ....+.|+.|+++++ .+..++.... ...+|+++.+.+...+
T Consensus 160 ---~~l~~L~~L~l~~N~l~-~l~~~--~~~~~~L~~L~ls~N-~i~~l~~~~~----------~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 160 ---RNLPNLKNLDLSFNDLS-DLPKL--LSNLSNLNNLDLSGN-KISDLPPEIE----------LLSALEELDLSNNSII 222 (394)
T ss_pred ---hccccccccccCCchhh-hhhhh--hhhhhhhhheeccCC-ccccCchhhh----------hhhhhhhhhhcCCcce
Confidence 44788889888887654 33332 237788888888886 4444443210 1244777777765423
Q ss_pred cccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEec
Q 047829 207 KRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLEL 286 (407)
Q Consensus 207 ~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 286 (407)
..+. .+..+.++..+.+.. .++... + .....+++++.|+++++.... ....+.+.+++.|++
T Consensus 223 ~~~~----~~~~~~~l~~l~l~~-n~~~~~-~-~~~~~l~~l~~L~~s~n~i~~-----------i~~~~~~~~l~~L~~ 284 (394)
T COG4886 223 ELLS----SLSNLKNLSGLELSN-NKLEDL-P-ESIGNLSNLETLDLSNNQISS-----------ISSLGSLTNLRELDL 284 (394)
T ss_pred ecch----hhhhcccccccccCC-ceeeec-c-chhccccccceeccccccccc-----------cccccccCccCEEec
Confidence 2221 122344445444322 222221 1 123346778888886664321 222556778888888
Q ss_pred cccc
Q 047829 287 SRLH 290 (407)
Q Consensus 287 ~~~~ 290 (407)
++..
T Consensus 285 s~n~ 288 (394)
T COG4886 285 SGNS 288 (394)
T ss_pred cCcc
Confidence 8743
No 46
>PLN03150 hypothetical protein; Provisional
Probab=96.62 E-value=0.0036 Score=63.77 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=32.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|+++++.-.+.+|.. +..+++|+.|+++++.....+|..+..+++|+.|+++++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 344556666666653322333332 222556666666655444455555556666666666553
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.43 E-value=0.0027 Score=39.75 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=13.3
Q ss_pred CccEEeecCCCccccccccccCCCCcceeEE
Q 047829 45 SLERVSVTFCPDMKTFSQGILSTPKLHKVQV 75 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 75 (407)
+|++|+++++ .+.++|..+.++++|++|++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l 31 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNL 31 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEe
Confidence 4445555544 44444433444444444444
No 48
>PLN03150 hypothetical protein; Provisional
Probab=96.37 E-value=0.0051 Score=62.70 Aligned_cols=31 Identities=6% Similarity=0.047 Sum_probs=15.6
Q ss_pred ccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 46 LERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 46 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
++.|+++++.--..+|..+..+++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls 450 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLS 450 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECC
Confidence 4555555553223455555555555555553
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.15 E-value=0.008 Score=37.63 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=31.1
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCcccccc
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS 61 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 61 (407)
++|++|+++++ ++++++.. ...+++|++|+++++ .+.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCCc
Confidence 57999999995 78888763 458999999999999 566665
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.018 Score=51.42 Aligned_cols=197 Identities=17% Similarity=0.035 Sum_probs=96.9
Q ss_pred cCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCC
Q 047829 65 LSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCT 144 (407)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 144 (407)
..++.++++++.+ +.-+....+..-...++.|++|+++.++--..+..-. .| ..+|+.|.+.+..
T Consensus 68 ~~~~~v~elDL~~-----------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p---~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTG-----------NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP---LKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhccc-----------chhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc---ccceEEEEEcCCC
Confidence 3356777777753 1112334455555677899999999877222222111 22 4788888887643
Q ss_pred CCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCC-ccccCCCcc
Q 047829 145 NMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTG-NIIELPMFW 223 (407)
Q Consensus 145 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~L~ 223 (407)
.-+. -....+..+|.+++|+++.|+ ...+..-..+. .+.-+.++++....|.... |.... ...-||++.
T Consensus 133 L~w~-~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~------e~~s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 133 LSWT-QSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCI------EDWSTEVLTLHQLPCLEQL--WLNKNKLSRIFPNVN 202 (418)
T ss_pred CChh-hhhhhhhcchhhhhhhhccch-hhhhccccccc------cccchhhhhhhcCCcHHHH--HHHHHhHHhhcccch
Confidence 3221 122335677888888887652 22221111111 0111456666666554221 21111 012367777
Q ss_pred EEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 224 SLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 224 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
.+.+..|| ++......-...++.+-.|.+... ++.. .++.+++..|++|+.|.++..+-...+
T Consensus 203 sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~ids-------wasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 203 SVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDS-------WASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred heeeecCc-ccchhhcccCCCCCcchhhhhccc-cccc-------HHHHHHHcCCchhheeeccCCcccccc
Confidence 77776664 222211111111333333333211 1111 344556777888888888876555444
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.54 E-value=0.003 Score=61.00 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=49.8
Q ss_pred CccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccC
Q 047829 45 SLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHG 124 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 124 (407)
=|++|-++++ +++.+|..++-.+.|..|+... +.+..+|..++++.+|+.|.+..+. +.+++..
T Consensus 144 pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~--------------nei~slpsql~~l~slr~l~vrRn~-l~~lp~E 207 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK--------------NEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE 207 (722)
T ss_pred cceeEEEecC-ccccCCcccccchhHHHhhhhh--------------hhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH
Confidence 3555555555 5556666666555555555532 3344455555555555555555443 2222111
Q ss_pred CCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 125 QALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 125 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
. . .-.|..|+++. +.+..+|.. +.+|++|++|.+.+|
T Consensus 208 l----~-~LpLi~lDfSc-Nkis~iPv~--fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 208 L----C-SLPLIRLDFSC-NKISYLPVD--FRKMRHLQVLQLENN 244 (722)
T ss_pred H----h-CCceeeeeccc-Cceeecchh--hhhhhhheeeeeccC
Confidence 1 1 12355555543 333334443 566666666666654
No 52
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0011 Score=55.68 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=45.5
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccc--cccccccccCEEEeccCcCcccccCchhhhccc
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV--PASWHLENLATLKVSKCHGLINLLTLSTSESLV 357 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 357 (407)
.++.++-+++ .+-.+++..+.+++.++.|.+.+|..+.+.- .-.+..++|++|++++|+.+++-.- .....++
T Consensus 102 ~IeaVDAsds----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDS----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLK 176 (221)
T ss_pred eEEEEecCCc----hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhh
Confidence 4445555552 2222333333446667777777776654321 0112456777777777777766522 2334456
Q ss_pred cCCEEEEecccch
Q 047829 358 NLERMKITDCKMM 370 (407)
Q Consensus 358 ~L~~L~i~~c~~l 370 (407)
+|+.|.+.+.+.+
T Consensus 177 nLr~L~l~~l~~v 189 (221)
T KOG3864|consen 177 NLRRLHLYDLPYV 189 (221)
T ss_pred hhHHHHhcCchhh
Confidence 6666666665443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.0092 Score=53.20 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=16.6
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
..++++++.+|.....--....+.++|+|+.|+++.|
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 4455555555433221111123455666666666543
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.45 E-value=0.0034 Score=60.69 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=87.9
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHH
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCY 98 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 98 (407)
-|+.|.+++ .+++.+|.. .+..+.|..||.+.| .+..+|..++.+..|+.|.++. +-+..+|
T Consensus 144 pLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR--------------n~l~~lp 205 (722)
T KOG0532|consen 144 PLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR--------------NHLEDLP 205 (722)
T ss_pred cceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh--------------hhhhhCC
Confidence 466666666 467777666 347799999999999 8889999999999999999853 4456677
Q ss_pred HhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccc--hhhccccCCeeEEccc
Q 047829 99 KEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVN--LLRCLNNLGWLEVRNC 169 (407)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~ 169 (407)
+++.. =.|..||++.+. +..++... ..|+.|+.|.+.+|..- . |+.. .-++..=.++|++.-|
T Consensus 206 ~El~~-LpLi~lDfScNk-is~iPv~f----r~m~~Lq~l~LenNPLq-S-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 206 EELCS-LPLIRLDFSCNK-ISYLPVDF----RKMRHLQVLQLENNPLQ-S-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHhC-CceeeeecccCc-eeecchhh----hhhhhheeeeeccCCCC-C-ChHHHHhccceeeeeeecchhc
Confidence 77773 348888888765 66555544 55788888888876543 2 3322 2234445566777666
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.16 E-value=0.0011 Score=65.72 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=39.4
Q ss_pred hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 100 EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
.+..+++|++|||+.+. +..++.-. ... ..|+.|.+++|... .+ -.+.++++|+.|++++|
T Consensus 204 ~Lr~l~~LkhLDlsyN~-L~~vp~l~---~~g-c~L~~L~lrnN~l~-tL---~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNC-LRHVPQLS---MVG-CKLQLLNLRNNALT-TL---RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhcccccccccccch-hccccccc---hhh-hhheeeeecccHHH-hh---hhHHhhhhhhccchhHh
Confidence 44567888888888765 44443222 112 34888888876443 22 23688899999999875
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.0068 Score=50.97 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=44.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEe
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIV 77 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~ 77 (407)
.++.++.|.+.+|..+.+++.....+-.++|+.|++++|+++++. ...+.++++|+.|.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 356777778888888888877765556788888888888888742 23456677777777754
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.14 E-value=0.036 Score=28.77 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=15.1
Q ss_pred CccEEeecCCCcccccccccc
Q 047829 45 SLERVSVTFCPDMKTFSQGIL 65 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~ 65 (407)
+|++|++++| .++.+|..++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 4788888888 7778886544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.77 E-value=0.14 Score=43.32 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=28.1
Q ss_pred cCCcCceeeccCcccccccccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 306 FANLKSPEISECSKLQKLVPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
++.|..|.+.++. +..+.+.+ ..+|+|+.|.+.+ +.+..+..-.-...+|.|++|.+.+.
T Consensus 63 l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecCCc-ceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCC
Confidence 4555555555432 33333323 2345566666655 33333322222334556666665554
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.27 E-value=0.064 Score=25.89 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=8.5
Q ss_pred CCccEEeecCCCcccccc
Q 047829 44 PSLERVSVTFCPDMKTFS 61 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp 61 (407)
++|+.|++++| .++.+|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 35677777777 355554
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.25 E-value=0.021 Score=49.97 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=21.7
Q ss_pred cCCceEEEEecC--CCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDC--TNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|.++.+ +....+... ..++|+|+++++++|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC
Confidence 667777777766 433333332 455577777777765
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.85 E-value=0.015 Score=58.13 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=40.1
Q ss_pred cccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhh
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
..++.++.|+|+. ++++.+.. +..++.|+.|+++-+ .+..+|-. ...+ .|+.|.+.+ +.++.+ ...+
T Consensus 184 qll~ale~LnLsh-Nk~~~v~~-----Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL---~gie 251 (1096)
T KOG1859|consen 184 QLLPALESLNLSH-NKFTKVDN-----LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRN-NALTTL---RGIE 251 (1096)
T ss_pred HHHHHhhhhccch-hhhhhhHH-----HHhcccccccccccc-hhccccccchhhh-hheeeeecc-cHHHhh---hhHH
Confidence 3455666666665 34443331 223566666666542 24444421 1222 266666665 445444 2345
Q ss_pred ccccCCEEEEecc
Q 047829 355 SLVNLERMKITDC 367 (407)
Q Consensus 355 ~l~~L~~L~i~~c 367 (407)
++.+|+.|+++++
T Consensus 252 ~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN 264 (1096)
T ss_pred hhhhhhccchhHh
Confidence 5666666666553
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.60 E-value=0.31 Score=41.27 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhc-CCCCccEEEeccCCCcceec
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMI-GFRDIWYLQLSYFPRLKEIW 122 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~ 122 (407)
.+...+|++++ .+..++ .+..++.|.+|.+.. +.|+.+-..+. -+++|..|.+.++.-.+-..
T Consensus 42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~n--------------NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d 105 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNN--------------NRITRIDPDLDTFLPNLKTLILTNNSIQELGD 105 (233)
T ss_pred cccceeccccc-chhhcc-cCCCccccceEEecC--------------CcceeeccchhhhccccceEEecCcchhhhhh
Confidence 44555566665 444433 334455666666632 22222222222 12456666666654111100
Q ss_pred cCCCCCccccCCceEEEEecCCCCCcC-CccchhhccccCCeeEEcc
Q 047829 123 HGQALPVSFFNNLCKLVVDDCTNMSSA-IPVNLLRCLNNLGWLEVRN 168 (407)
Q Consensus 123 ~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~ 168 (407)
.. |.-.+++|++|.+.++.....- -....+.++|+|+.|+..+
T Consensus 106 l~---pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 106 LD---PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cc---hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 10 1133677888877776543210 1223567888899988865
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.86 E-value=0.12 Score=45.45 Aligned_cols=111 Identities=20% Similarity=0.074 Sum_probs=65.4
Q ss_pred ccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc--ccccccccccccccccCCcCceeeccCcc
Q 047829 242 SILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH--KVQHLWKENAESNKVFANLKSPEISECSK 319 (407)
Q Consensus 242 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 319 (407)
...+..|+.+.+.++...+ ......+|+|+.|.+++.. -...+..- ...+|+|+.+.++++..
T Consensus 39 ~d~~~~le~ls~~n~gltt-----------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-----------LTNFPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccchhhhhhhccceee-----------cccCCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCcc
Confidence 3446677777776665443 1223446788999998742 22222211 12358899998887542
Q ss_pred --ccccccccccccccCEEEeccCcCcccc-cCchhhhccccCCEEEEeccc
Q 047829 320 --LQKLVPASWHLENLATLKVSKCHGLINL-LTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 320 --l~~l~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++++. ....+.+|..|++.+|+-..-. ....++.-+++|++++-.++.
T Consensus 104 ~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 104 KDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred ccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 22232 2456778888888888654311 123345567888888766553
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.66 E-value=0.13 Score=46.98 Aligned_cols=197 Identities=19% Similarity=0.093 Sum_probs=107.7
Q ss_pred ecccceeeeCccccc-cccc-ccccccccCCccEEeecCCCccc-----c---------ccccccCCCCcceeEEEeecc
Q 047829 17 FSELKFLILDYLPRL-TSFC-LENYTLEFPSLERVSVTFCPDMK-----T---------FSQGILSTPKLHKVQVIVKEE 80 (407)
Q Consensus 17 l~~L~~L~l~~~~~l-~~~~-~~~~~~~~~~L~~L~l~~c~~l~-----~---------lp~~~~~l~~L~~L~l~~~~~ 80 (407)
.++|++|+|++..-= +..+ ......++..|++|.+.+|. +. . ....+..-++|+++......
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 468888888874210 1000 11224468999999999994 22 1 22345666788888774200
Q ss_pred cccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceec--cCCCCCccccCCceEEEEecCCCCCc--CCccchhh
Q 047829 81 GELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIW--HGQALPVSFFNNLCKLVVDDCTNMSS--AIPVNLLR 156 (407)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~ 156 (407)
.+ +..-+.+-..+...+.|+.+.+..+.-....- ....+ ..+++|+.|++++|..... ......++
T Consensus 169 ------le--n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal--~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 169 ------LE--NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL--EHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred ------cc--cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHH--HhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 00 11222333344555788888888776322111 00001 3478999999998876532 11234567
Q ss_pred ccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccc-cCCCccccCCCccEEeEecC
Q 047829 157 CLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFC-NFTGNIIELPMFWSLTIENC 230 (407)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~L~~L~l~~c 230 (407)
.+++|++|.+++|. ++.-+ ..++...+...+|+|+.|.+..+..-.+-- .....+..-|.|+.|.++.|
T Consensus 239 s~~~L~El~l~dcl-l~~~G----a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL-LENEG----AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccchheeecccccc-ccccc----HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 88899999999884 22222 222222333346899999988764321100 00001223456666666664
No 65
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.35 E-value=0.25 Score=26.77 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.1
Q ss_pred ecccceEecCCCCCcce
Q 047829 388 FRKLEYLGLDCLPSLTS 404 (407)
Q Consensus 388 ~~~L~~L~l~~cp~l~~ 404 (407)
+++|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47899999999998874
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.62 E-value=2.4 Score=33.10 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEec
Q 047829 279 PQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVS 339 (407)
Q Consensus 279 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~ 339 (407)
++|+++.+.. .+..++...+.. +++++.+.+.+ .+..++. .+..+++|+.+.+.
T Consensus 35 ~~l~~i~~~~--~~~~i~~~~F~~---~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 35 TSLKSINFPN--NLTSIGDNAFSN---CKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT-SEEEESS--TTSCE-TTTTTT----TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred cccccccccc--cccccceeeeec---ccccccccccc--cccccccccccccccccccccC
Confidence 3455555443 244444444432 44566666643 2222322 22335666666664
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.10 E-value=0.26 Score=47.78 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=14.9
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+..|+.|++.+|.... + ..+..+++|+.++++++
T Consensus 139 l~~L~~L~l~~N~i~~-~---~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISD-I---SGLESLKSLKLLDLSYN 172 (414)
T ss_pred ccchhhheeccCcchh-c---cCCccchhhhcccCCcc
Confidence 3445555555544321 1 11233455555555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.61 E-value=0.077 Score=47.10 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=53.4
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+.+.+.|++.+| .+.+. ..+.+++.|++|.++=+ ++..+- .+.+|.+|++|+|+. +.|..
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRk--------------N~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRK--------------NCIES 77 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHh--------------ccccc
Confidence 455667777776 34433 22458899999999977 565553 567889999999954 23333
Q ss_pred HH--HhhcCCCCccEEEeccCC
Q 047829 97 CY--KEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 97 l~--~~~~~~~~L~~L~l~~~~ 116 (407)
+- +.++++++|++|.|..++
T Consensus 78 ldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHHHhcCchhhhHhhccCC
Confidence 32 245677788888777666
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=84.57 E-value=0.31 Score=38.69 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=41.4
Q ss_pred cCCccEEeecCCCccccccccccC-CCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCC
Q 047829 43 FPSLERVSVTFCPDMKTFSQGILS-TPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 116 (407)
-..|+..+++++ .++++|..+.. ++.++++++. ++.+.++|+++..++.|+.|+++.++
T Consensus 52 ~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~--------------~neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLA--------------NNEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccc-hhhhCCHHHhhccchhhhhhcc--------------hhhhhhchHHHhhhHHhhhcccccCc
Confidence 466677788887 67777765543 5677788774 36677788887777777777777666
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=0.055 Score=47.97 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=48.1
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
.+.+.|+..+| ++.+|.. ...++.|+.|.++= ++++.+.+ ++.|++|++|++..+.. .++- ..
T Consensus 19 ~~vkKLNcwg~-~L~DIsi----c~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~I-~sld-------EL 81 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI----CEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNCI-ESLD-------EL 81 (388)
T ss_pred HHhhhhcccCC-CccHHHH----HHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhccc-ccHH-------HH
Confidence 45556666665 3444422 23567788887743 45555543 44688888888865431 1110 11
Q ss_pred ccccccCCcceEecccccccc
Q 047829 273 DEKVTFPQLRFLELSRLHKVQ 293 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~ 293 (407)
..+.++|+|+.|+|...+-.+
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HHHhcCchhhhHhhccCCccc
Confidence 225667888888888755443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.25 E-value=6 Score=30.75 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=18.5
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEec
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVS 339 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~ 339 (407)
+++.+.+.. .+..++...+.. +++|+.+.+.. .+..++.. +..+ .|+.+.+.
T Consensus 59 ~l~~i~~~~--~~~~i~~~~F~~---~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 59 SLESITFPN--NLKSIGDNAFSN---CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-EEEEETS--TT-EE-TTTTTT----TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccc--cccccccccccc---cccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 444444432 333344333332 55666666642 23333321 2333 56666554
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.31 E-value=1.5 Score=23.46 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=14.2
Q ss_pred cCCccEEeecCCCccccccccc
Q 047829 43 FPSLERVSVTFCPDMKTFSQGI 64 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp~~~ 64 (407)
+++|++|++.++ .++.+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 356777777777 677776543
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.31 E-value=1.5 Score=23.46 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=14.2
Q ss_pred cCCccEEeecCCCccccccccc
Q 047829 43 FPSLERVSVTFCPDMKTFSQGI 64 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp~~~ 64 (407)
+++|++|++.++ .++.+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 356777777777 677776543
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=77.32 E-value=0.39 Score=38.17 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=52.5
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCcccccccccc-ccccccCEEEeccCcCcccccCchhhhcccc
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVN 358 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 358 (407)
-+..++|++|.-+ .++..-+. +.....|...+++++ .++.+|+.+ ..+|..+++++++ +.+.++|. . ...++.
T Consensus 28 E~h~ldLssc~lm-~i~davy~-l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPe-E-~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYM-LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPE-E-LAAMPA 101 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHH-HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchH-H-HhhhHH
Confidence 5667777776432 22211110 111345666777764 467777644 3467899999987 77887743 3 457889
Q ss_pred CCEEEEeccc
Q 047829 359 LERMKITDCK 368 (407)
Q Consensus 359 L~~L~i~~c~ 368 (407)
|+.|++..++
T Consensus 102 Lr~lNl~~N~ 111 (177)
T KOG4579|consen 102 LRSLNLRFNP 111 (177)
T ss_pred hhhcccccCc
Confidence 9999998875
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=76.53 E-value=1.5 Score=42.48 Aligned_cols=106 Identities=24% Similarity=0.212 Sum_probs=68.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
+..+.+|+.+++.+ +.+..+... +..+++|+.|++++. .+..+. ++..++.|+.|++.+ +.+..+ ....
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~----l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~-N~i~~~---~~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENL----LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSG-NLISDI---SGLE 159 (414)
T ss_pred cccccceeeeeccc-cchhhcccc----hhhhhcchheecccc-cccccc-chhhccchhhheecc-Ccchhc---cCCc
Confidence 56688999999988 455555441 223889999999875 345443 356677799999988 566655 2234
Q ss_pred ccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 355 SLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 355 ~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
.+++|+.++++++ .+..+... . ...+.+++.+.+.+.
T Consensus 160 ~l~~L~~l~l~~n-~i~~ie~~------~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN-RIVDIEND------E-LSELISLEELDLGGN 196 (414)
T ss_pred cchhhhcccCCcc-hhhhhhhh------h-hhhccchHHHhccCC
Confidence 4778888888887 44444300 0 345666666666554
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=66.51 E-value=2.8 Score=37.44 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=37.0
Q ss_pred cCCccEEeecCCC----------ccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEe
Q 047829 43 FPSLERVSVTFCP----------DMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQL 112 (407)
Q Consensus 43 ~~~L~~L~l~~c~----------~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 112 (407)
-.+|++.++++.- ++..+.+.+.+||+|+.+++++.- . -++.+..+-+-+.+.+.|.+|.+
T Consensus 57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-------f--g~~~~e~L~d~is~~t~l~HL~l 127 (388)
T COG5238 57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-------F--GSEFPEELGDLISSSTDLVHLKL 127 (388)
T ss_pred hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-------c--CcccchHHHHHHhcCCCceeEEe
Confidence 4666666666541 111233455777888888885410 0 01223344455667777888888
Q ss_pred ccCC
Q 047829 113 SYFP 116 (407)
Q Consensus 113 ~~~~ 116 (407)
++|.
T Consensus 128 ~NnG 131 (388)
T COG5238 128 NNNG 131 (388)
T ss_pred ecCC
Confidence 8776
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=48.54 E-value=24 Score=31.84 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=55.8
Q ss_pred cccCCccEEeecCCCccc----cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCC
Q 047829 41 LEFPSLERVSVTFCPDMK----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 41 ~~~~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 116 (407)
..+..+..++++++..-+ .+...+.+-.+|+..++++...+. ....+...+.-+...+-+|++|+..+++++.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr---~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGR---DKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcc---cHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 357889999999985333 355556666778888775411110 0111233445555666688888888888765
Q ss_pred CcceeccCCCCCc------cccCCceEEEEecCC
Q 047829 117 RLKEIWHGQALPV------SFFNNLCKLVVDDCT 144 (407)
Q Consensus 117 ~l~~~~~~~~~~~------~~l~~L~~L~l~~~~ 144 (407)
.+.+++. ..-..|+.|.+.+|.
T Consensus 104 ------fg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 104 ------FGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ------cCcccchHHHHHHhcCCCceeEEeecCC
Confidence 1111221 123567777777654
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=45.55 E-value=15 Score=19.00 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=7.1
Q ss_pred CCccEEeecCCC
Q 047829 44 PSLERVSVTFCP 55 (407)
Q Consensus 44 ~~L~~L~l~~c~ 55 (407)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 567777777773
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=42.82 E-value=15 Score=19.91 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=13.3
Q ss_pred CCccEEeecCCCccccccc
Q 047829 44 PSLERVSVTFCPDMKTFSQ 62 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~ 62 (407)
++|+.|+++++ +++++|.
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 46788888888 6777763
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.74 E-value=55 Score=17.78 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=8.0
Q ss_pred CCccEEeecCC
Q 047829 44 PSLERVSVTFC 54 (407)
Q Consensus 44 ~~L~~L~l~~c 54 (407)
++|++|+++++
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 46777777777
Done!