Query 047829
Match_columns 407
No_of_seqs 143 out of 2145
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 05:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 3.6E-21 1.2E-25 180.5 20.0 305 14-400 40-344 (347)
2 4eco_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 197.8 16.2 326 40-400 202-577 (636)
3 3rgz_A Protein brassinosteroid 99.9 1E-20 3.5E-25 195.7 21.8 84 306-399 631-714 (768)
4 3o6n_A APL1; leucine-rich repe 99.9 2.4E-20 8.2E-25 177.7 20.7 309 13-400 40-350 (390)
5 3v47_A TOLL-like receptor 5B a 99.9 1.2E-20 4.2E-25 183.4 18.3 330 18-400 30-406 (455)
6 3rgz_A Protein brassinosteroid 99.9 7.8E-21 2.7E-25 196.5 17.6 336 16-400 98-453 (768)
7 3t6q_A CD180 antigen; protein- 99.8 4.4E-20 1.5E-24 186.0 20.9 112 277-399 374-486 (606)
8 4fmz_A Internalin; leucine ric 99.8 6E-20 2.1E-24 172.1 20.1 283 14-368 62-344 (347)
9 3t6q_A CD180 antigen; protein- 99.8 4.5E-20 1.6E-24 185.9 20.4 266 101-400 274-558 (606)
10 4ecn_A Leucine-rich repeat pro 99.8 6E-20 2E-24 189.9 20.8 339 16-401 446-839 (876)
11 4eco_A Uncharacterized protein 99.8 1.6E-20 5.4E-25 190.0 16.1 344 16-402 204-600 (636)
12 4ecn_A Leucine-rich repeat pro 99.8 2.5E-20 8.5E-25 192.8 17.2 322 40-401 444-818 (876)
13 3vq2_A TLR4, TOLL-like recepto 99.8 9E-20 3.1E-24 183.8 21.0 192 192-401 349-557 (606)
14 3oja_B Anopheles plasmodium-re 99.8 5.7E-20 1.9E-24 184.8 18.9 307 15-400 48-356 (597)
15 2id5_A Lingo-1, leucine rich r 99.8 7.8E-20 2.7E-24 178.9 18.7 298 18-368 32-331 (477)
16 3vq2_A TLR4, TOLL-like recepto 99.8 8.3E-20 2.8E-24 184.1 17.7 85 306-400 447-532 (606)
17 2z7x_B TOLL-like receptor 1, v 99.8 2.9E-19 9.9E-24 176.8 21.1 155 218-400 322-479 (520)
18 2id5_A Lingo-1, leucine rich r 99.8 2.4E-19 8.1E-24 175.4 19.8 33 42-75 78-111 (477)
19 1o6v_A Internalin A; bacterial 99.8 5.6E-19 1.9E-23 172.3 21.2 302 16-400 44-364 (466)
20 1o6v_A Internalin A; bacterial 99.8 7.9E-19 2.7E-23 171.2 21.6 307 14-400 64-386 (466)
21 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-19 4.9E-24 175.6 16.1 258 16-346 40-301 (457)
22 2z63_A TOLL-like receptor 4, v 99.8 8.2E-19 2.8E-23 175.4 20.3 238 131-400 280-529 (570)
23 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-18 3.7E-23 182.3 21.9 135 17-170 23-159 (844)
24 2z81_A CD282 antigen, TOLL-lik 99.8 6.9E-19 2.4E-23 175.2 18.4 133 17-170 25-159 (549)
25 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-19 9.9E-24 177.9 15.6 157 218-400 332-508 (549)
26 3v47_A TOLL-like receptor 5B a 99.8 1.4E-18 4.8E-23 168.9 19.6 315 14-368 50-406 (455)
27 3j0a_A TOLL-like receptor 5; m 99.8 2E-18 6.8E-23 180.3 20.8 137 14-170 44-185 (844)
28 3o6n_A APL1; leucine-rich repe 99.8 2.9E-18 1E-22 163.3 19.9 282 16-368 67-350 (390)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.9E-18 6.4E-23 172.6 19.3 157 218-400 351-508 (562)
30 2z63_A TOLL-like receptor 4, v 99.8 5.5E-19 1.9E-23 176.6 14.9 112 275-399 392-504 (570)
31 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-18 7.3E-23 170.5 17.4 130 244-399 322-454 (520)
32 1ziw_A TOLL-like receptor 3; i 99.8 3.9E-18 1.3E-22 174.1 18.6 182 193-400 430-620 (680)
33 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-18 5.1E-23 168.5 14.2 256 40-374 38-303 (457)
34 1ziw_A TOLL-like receptor 3; i 99.8 3.1E-18 1.1E-22 174.9 17.1 106 222-341 250-363 (680)
35 1xku_A Decorin; proteoglycan, 99.8 2.5E-17 8.4E-22 153.2 19.1 291 19-399 32-329 (330)
36 3oja_B Anopheles plasmodium-re 99.8 2.7E-17 9.1E-22 165.3 19.8 281 17-368 74-356 (597)
37 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-17 8.8E-22 153.3 17.7 113 275-400 213-331 (332)
38 4fcg_A Uncharacterized protein 99.8 1.7E-17 5.8E-22 154.1 16.3 132 17-169 80-216 (328)
39 4fcg_A Uncharacterized protein 99.7 3.6E-17 1.2E-21 151.9 18.2 230 43-365 80-309 (328)
40 3ogk_B Coronatine-insensitive 99.7 4E-19 1.4E-23 178.5 5.3 217 155-400 289-524 (592)
41 2p1m_B Transport inhibitor res 99.7 6.4E-19 2.2E-23 177.1 6.4 115 277-401 395-518 (594)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.7E-17 9.3E-22 164.2 17.9 129 244-399 351-483 (562)
43 4g8a_A TOLL-like receptor 4; l 99.7 1.5E-16 5.2E-21 160.7 21.1 112 275-400 465-578 (635)
44 3ogk_B Coronatine-insensitive 99.7 2.1E-18 7.3E-23 173.2 3.1 219 131-368 291-524 (592)
45 1xku_A Decorin; proteoglycan, 99.7 2.6E-16 8.9E-21 146.3 16.8 200 17-257 51-251 (330)
46 2ft3_A Biglycan; proteoglycan, 99.7 2.1E-16 7.2E-21 147.0 15.2 289 19-368 34-331 (332)
47 2p1m_B Transport inhibitor res 99.7 4.4E-18 1.5E-22 170.9 3.7 318 16-369 154-518 (594)
48 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-15 4.3E-20 152.6 19.0 257 18-369 40-296 (622)
49 1ogq_A PGIP-2, polygalacturona 99.7 2.7E-16 9.3E-21 145.0 12.1 109 44-170 50-160 (313)
50 2z80_A TOLL-like receptor 2, v 99.7 7.5E-16 2.6E-20 144.6 14.4 237 101-368 72-312 (353)
51 1z7x_W Ribonuclease inhibitor; 99.7 3.4E-17 1.1E-21 159.3 5.3 348 17-400 27-409 (461)
52 1jl5_A Outer protein YOPM; leu 99.7 4.8E-15 1.6E-19 143.6 19.8 296 18-400 91-407 (454)
53 1jl5_A Outer protein YOPM; leu 99.6 3.3E-15 1.1E-19 144.8 17.9 263 17-368 110-407 (454)
54 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.5E-19 145.2 21.0 235 18-342 61-295 (622)
55 1ogq_A PGIP-2, polygalacturona 99.6 7.1E-15 2.4E-19 135.5 15.7 159 217-403 146-305 (313)
56 4g8a_A TOLL-like receptor 4; l 99.6 2.3E-14 7.9E-19 144.7 20.8 155 193-366 420-576 (635)
57 3zyi_A Leucine-rich repeat-con 99.6 2.8E-14 9.7E-19 138.4 19.2 241 47-340 57-299 (452)
58 3o53_A Protein LRIM1, AGAP0063 99.6 3.6E-16 1.2E-20 144.5 5.1 246 42-373 32-278 (317)
59 3zyi_A Leucine-rich repeat-con 99.6 1.8E-14 6.2E-19 139.7 17.4 226 105-367 75-300 (452)
60 3zyj_A Leucine-rich repeat-con 99.6 1.7E-14 5.7E-19 139.5 17.0 226 105-367 64-289 (440)
61 3zyj_A Leucine-rich repeat-con 99.6 4E-14 1.4E-18 136.9 19.0 245 45-342 44-290 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.6 9.5E-16 3.3E-20 141.6 7.2 193 16-256 32-224 (317)
63 2z66_A Variable lymphocyte rec 99.6 3E-14 1E-18 130.8 16.2 229 105-367 28-258 (306)
64 2z80_A TOLL-like receptor 2, v 99.6 1.6E-14 5.5E-19 135.4 13.0 255 44-343 52-313 (353)
65 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-16 7.9E-21 153.4 -1.0 348 17-400 2-381 (461)
66 1ozn_A Reticulon 4 receptor; N 99.6 2.3E-14 7.9E-19 130.2 12.3 123 22-169 15-139 (285)
67 2z66_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 126.3 16.6 244 47-342 10-259 (306)
68 1ozn_A Reticulon 4 receptor; N 99.5 2.8E-13 9.5E-18 123.0 18.0 156 193-367 80-235 (285)
69 2ast_B S-phase kinase-associat 99.5 6.3E-15 2.2E-19 137.1 6.4 109 44-169 70-178 (336)
70 3oja_A Leucine-rich immune mol 99.5 2E-14 6.7E-19 140.6 8.6 192 17-256 33-224 (487)
71 2xwt_C Thyrotropin receptor; s 99.5 2.3E-13 7.9E-18 120.2 14.2 104 283-402 134-239 (239)
72 3oja_A Leucine-rich immune mol 99.5 6.5E-13 2.2E-17 129.8 15.1 237 103-397 32-270 (487)
73 2xwt_C Thyrotropin receptor; s 99.5 9.1E-13 3.1E-17 116.4 14.4 84 275-368 151-237 (239)
74 4ay9_X Follicle-stimulating ho 99.5 3.5E-12 1.2E-16 119.4 19.0 240 49-340 14-255 (350)
75 2ast_B S-phase kinase-associat 99.4 1.2E-13 4E-18 128.5 7.3 235 105-374 70-309 (336)
76 4ay9_X Follicle-stimulating ho 99.4 1.2E-12 4.2E-17 122.4 14.0 234 95-366 22-255 (350)
77 1p9a_G Platelet glycoprotein I 99.4 1.2E-11 4E-16 112.6 16.5 200 102-342 7-206 (290)
78 1h6u_A Internalin H; cell adhe 99.3 5.4E-12 1.9E-16 115.8 12.2 54 17-76 40-93 (308)
79 1h6u_A Internalin H; cell adhe 99.3 6.4E-12 2.2E-16 115.3 12.5 191 130-368 38-228 (308)
80 1wwl_A Monocyte differentiatio 99.3 4.6E-13 1.6E-17 123.3 4.7 115 42-170 41-160 (312)
81 2o6q_A Variable lymphocyte rec 99.3 3E-11 1E-15 108.6 15.4 200 133-368 16-216 (270)
82 2z62_A TOLL-like receptor 4, v 99.3 3.3E-11 1.1E-15 108.7 15.5 83 276-365 146-232 (276)
83 1p9a_G Platelet glycoprotein I 99.3 1.6E-11 5.4E-16 111.7 13.5 198 130-367 7-205 (290)
84 1wwl_A Monocyte differentiatio 99.3 4.9E-12 1.7E-16 116.4 10.1 252 16-340 41-305 (312)
85 2o6q_A Variable lymphocyte rec 99.3 8.7E-11 3E-15 105.6 17.0 180 132-342 36-216 (270)
86 3rfs_A Internalin B, repeat mo 99.3 7.4E-11 2.5E-15 106.2 14.1 177 130-341 38-215 (272)
87 2z62_A TOLL-like receptor 4, v 99.2 1.6E-10 5.6E-15 104.1 16.1 179 132-341 51-234 (276)
88 4glp_A Monocyte differentiatio 99.2 5.1E-11 1.7E-15 109.4 12.6 82 218-318 222-305 (310)
89 2ca6_A RAN GTPase-activating p 99.2 4.8E-12 1.6E-16 120.0 5.0 137 220-368 159-314 (386)
90 2ca6_A RAN GTPase-activating p 99.2 6.9E-13 2.4E-17 125.9 -0.9 271 41-366 29-339 (386)
91 3rfs_A Internalin B, repeat mo 99.2 7.1E-11 2.4E-15 106.3 12.4 199 130-367 16-215 (272)
92 4glp_A Monocyte differentiatio 99.2 1.8E-10 6.3E-15 105.6 12.2 54 307-367 251-304 (310)
93 3m19_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 100.3 12.7 176 159-368 14-190 (251)
94 4ezg_A Putative uncharacterize 99.1 1.3E-10 4.5E-15 99.2 9.3 111 41-174 41-151 (197)
95 3goz_A Leucine-rich repeat-con 99.1 7.4E-11 2.5E-15 110.8 6.8 68 97-170 14-91 (362)
96 1h6t_A Internalin B; cell adhe 99.1 5.4E-10 1.8E-14 101.5 11.1 169 42-258 44-212 (291)
97 4ezg_A Putative uncharacterize 99.1 3.8E-10 1.3E-14 96.3 9.4 149 192-367 43-191 (197)
98 3m19_A Variable lymphocyte rec 99.1 3E-09 1E-13 94.3 14.7 176 133-342 14-190 (251)
99 1h6t_A Internalin B; cell adhe 99.0 2.6E-09 8.9E-14 97.0 14.4 168 130-341 43-210 (291)
100 1m9s_A Internalin B; cell inva 99.0 1.2E-09 3.9E-14 109.3 9.5 54 17-76 42-95 (605)
101 3goz_A Leucine-rich repeat-con 99.0 2.7E-10 9.1E-15 107.0 4.5 62 279-341 225-294 (362)
102 1m9s_A Internalin B; cell inva 99.0 2.4E-09 8.1E-14 107.0 10.9 194 127-368 15-208 (605)
103 1xeu_A Internalin C; cellular 98.9 1.3E-09 4.3E-14 97.6 7.0 164 17-229 18-181 (263)
104 2o6s_A Variable lymphocyte rec 98.9 6.5E-09 2.2E-13 89.3 9.4 131 219-367 27-158 (208)
105 2v70_A SLIT-2, SLIT homolog 2 98.9 2.8E-08 9.5E-13 86.2 13.0 130 193-340 32-162 (220)
106 2xot_A Amphoterin-induced prot 98.8 1.1E-08 3.9E-13 95.8 10.4 154 193-367 39-199 (361)
107 3cvr_A Invasion plasmid antige 98.8 2.4E-08 8.3E-13 98.7 13.0 181 133-373 59-246 (571)
108 2v70_A SLIT-2, SLIT homolog 2 98.8 1.6E-08 5.6E-13 87.7 10.3 152 195-368 13-164 (220)
109 2ell_A Acidic leucine-rich nuc 98.8 6.4E-09 2.2E-13 86.1 7.0 129 219-367 23-157 (168)
110 3e6j_A Variable lymphocyte rec 98.8 2.5E-08 8.5E-13 87.1 10.6 151 194-368 20-170 (229)
111 3cvr_A Invasion plasmid antige 98.8 3E-08 1E-12 98.1 12.2 49 19-76 60-108 (571)
112 2o6s_A Variable lymphocyte rec 98.8 4.2E-08 1.4E-12 84.2 11.6 148 192-367 27-175 (208)
113 2ell_A Acidic leucine-rich nuc 98.8 6.1E-09 2.1E-13 86.3 6.0 37 132-169 94-130 (168)
114 2v9t_B SLIT homolog 2 protein 98.8 2.8E-08 9.5E-13 86.2 10.3 150 196-368 14-163 (220)
115 1xeu_A Internalin C; cellular 98.8 1.1E-08 3.6E-13 91.5 7.6 147 14-204 37-183 (263)
116 2v9t_B SLIT homolog 2 protein 98.8 4.4E-08 1.5E-12 85.0 10.8 131 193-342 32-163 (220)
117 3e6j_A Variable lymphocyte rec 98.8 4.5E-08 1.5E-12 85.5 10.8 131 192-342 39-170 (229)
118 2je0_A Acidic leucine-rich nuc 98.8 8.3E-09 2.8E-13 83.6 5.6 86 306-397 63-148 (149)
119 2je0_A Acidic leucine-rich nuc 98.7 7.1E-09 2.4E-13 84.0 4.9 55 17-76 16-72 (149)
120 3sb4_A Hypothetical leucine ri 98.7 2.7E-07 9.2E-12 85.2 14.0 81 278-367 225-307 (329)
121 1a9n_A U2A', U2A'; complex (nu 98.6 7.1E-08 2.4E-12 80.5 7.6 133 216-368 15-151 (176)
122 2xot_A Amphoterin-induced prot 98.6 2.5E-07 8.7E-12 86.5 10.8 175 196-400 21-200 (361)
123 1w8a_A SLIT protein; signaling 98.5 1.5E-07 5.2E-12 79.7 7.2 50 21-76 11-62 (192)
124 2wfh_A SLIT homolog 2 protein 98.5 2.1E-07 7.2E-12 78.9 7.4 36 132-169 77-112 (193)
125 1a9n_A U2A', U2A'; complex (nu 98.5 3.9E-07 1.3E-11 75.9 8.6 126 193-341 19-150 (176)
126 1dce_A Protein (RAB geranylger 98.5 1.6E-07 5.5E-12 93.1 6.4 127 44-200 441-567 (567)
127 1w8a_A SLIT protein; signaling 98.5 1.3E-06 4.4E-11 73.9 11.1 63 275-341 74-136 (192)
128 1dce_A Protein (RAB geranylger 98.4 1E-07 3.5E-12 94.6 4.4 152 41-227 406-567 (567)
129 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.7E-12 78.4 3.7 88 280-372 62-154 (176)
130 2wfh_A SLIT homolog 2 protein 98.4 1.5E-06 5E-11 73.6 10.4 104 220-340 31-135 (193)
131 2o6r_A Variable lymphocyte rec 98.4 1.9E-06 6.3E-11 71.7 10.4 107 219-341 27-134 (177)
132 4b8c_D Glucose-repressible alc 98.3 3E-07 1E-11 94.0 4.3 110 40-172 220-329 (727)
133 2o6r_A Variable lymphocyte rec 98.3 1.6E-06 5.4E-11 72.2 7.6 125 223-368 10-135 (177)
134 4fdw_A Leucine rich hypothetic 98.3 1.6E-05 5.5E-10 75.2 14.7 14 155-168 176-189 (401)
135 3sb4_A Hypothetical leucine ri 98.2 1.1E-05 3.8E-10 74.2 12.4 55 193-254 250-305 (329)
136 4fdw_A Leucine rich hypothetic 98.2 7.1E-05 2.4E-09 70.8 18.2 222 105-367 157-380 (401)
137 1ds9_A Outer arm dynein; leuci 98.2 2.6E-08 8.9E-13 84.9 -5.5 35 41-77 45-79 (198)
138 3e4g_A ATP synthase subunit S, 98.1 1.7E-06 5.8E-11 71.3 4.4 93 246-347 61-155 (176)
139 4b8c_D Glucose-repressible alc 98.1 3.4E-06 1.2E-10 86.2 7.5 108 242-368 220-327 (727)
140 1ds9_A Outer arm dynein; leuci 98.1 6.1E-07 2.1E-11 76.2 0.3 154 221-396 24-181 (198)
141 2ra8_A Uncharacterized protein 98.0 2.9E-06 9.8E-11 79.1 4.3 57 102-167 169-227 (362)
142 3g39_A Variable lymphocyte rec 98.0 1E-05 3.5E-10 66.8 6.7 83 278-367 29-112 (170)
143 2r9u_A Variable lymphocyte rec 98.0 1.2E-05 4.3E-10 66.6 6.8 84 278-368 32-116 (174)
144 2ra8_A Uncharacterized protein 97.9 2.7E-05 9.1E-10 72.5 7.7 14 155-168 135-148 (362)
145 3g39_A Variable lymphocyte rec 97.8 7.4E-05 2.5E-09 61.5 8.5 62 275-341 50-112 (170)
146 2r9u_A Variable lymphocyte rec 97.8 9.1E-05 3.1E-09 61.3 8.7 62 275-341 53-115 (174)
147 4fs7_A Uncharacterized protein 97.7 0.0024 8.1E-08 60.1 18.4 82 275-366 293-375 (394)
148 2ifg_A High affinity nerve gro 97.6 0.00011 3.6E-09 68.1 7.2 86 275-367 27-113 (347)
149 3un9_A NLR family member X1; l 97.5 1.7E-05 6E-10 74.2 0.9 168 192-368 71-250 (372)
150 3un9_A NLR family member X1; l 97.4 4.8E-05 1.6E-09 71.2 2.1 168 17-204 71-250 (372)
151 4fs7_A Uncharacterized protein 97.3 0.0041 1.4E-07 58.4 15.0 35 216-253 181-215 (394)
152 2ifg_A High affinity nerve gro 97.3 0.00047 1.6E-08 63.6 7.8 104 225-345 13-116 (347)
153 4gt6_A Cell surface protein; l 96.7 0.29 9.9E-06 45.6 21.2 83 275-367 284-367 (394)
154 4h09_A Hypothetical leucine ri 96.5 0.19 6.4E-06 46.5 18.2 79 277-364 261-340 (379)
155 4gt6_A Cell surface protein; l 96.4 0.18 6E-06 47.1 17.3 104 275-397 261-365 (394)
156 1io0_A Tropomodulin; LRR prote 96.3 0.0025 8.6E-08 53.0 3.5 66 42-116 34-104 (185)
157 1io0_A Tropomodulin; LRR prote 95.8 0.01 3.5E-07 49.2 5.0 90 17-116 35-134 (185)
158 4h09_A Hypothetical leucine ri 95.1 1 3.6E-05 41.4 16.9 105 216-339 236-341 (379)
159 3rw6_A Nuclear RNA export fact 95.1 0.015 5.2E-07 51.2 3.9 60 306-368 169-231 (267)
160 3rw6_A Nuclear RNA export fact 93.6 0.054 1.9E-06 47.6 4.2 37 132-169 169-206 (267)
161 1pgv_A TMD-1, tropomodulin TMD 76.9 1.3 4.3E-05 36.8 2.5 92 245-341 40-136 (197)
162 3rfe_A Platelet glycoprotein I 70.8 3.5 0.00012 31.5 3.5 33 44-77 31-64 (130)
163 3rfe_A Platelet glycoprotein I 66.9 5.8 0.0002 30.2 4.0 36 133-170 31-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 66.7 4.8 0.00017 33.2 3.7 114 44-169 41-167 (197)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=3.6e-21 Score=180.47 Aligned_cols=305 Identities=14% Similarity=0.153 Sum_probs=222.8
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|+.|++.++ .+..++. ...+++|++|++++| .+..++. +..+++|++|++.++.
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~~~---~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-------------- 99 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASIQG---IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-------------- 99 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC--------------
T ss_pred chhcccccEEEEeCC-ccccchh---hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc--------------
Confidence 346889999999985 4665543 447899999999999 7888876 8899999999996521
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
+..+ ..+..+++|++|+++++. +...+. . ..+++|+.|++.+|.....++. +..+++|+.|++++|. +.
T Consensus 100 i~~~-~~~~~l~~L~~L~l~~n~-i~~~~~-~----~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~~ 168 (347)
T 4fmz_A 100 ITDI-SALQNLTNLRELYLNEDN-ISDISP-L----ANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-VK 168 (347)
T ss_dssp CCCC-GGGTTCTTCSEEECTTSC-CCCCGG-G----TTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-CC
T ss_pred ccCc-hHHcCCCcCCEEECcCCc-ccCchh-h----ccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-cC
Confidence 1112 246788999999999987 443322 1 4489999999999987765433 7899999999999875 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
.+..+ ..+++|+.|++.++. +..+.. +..+++|+.+++.++ .+....+ ...+++|++|++
T Consensus 169 ~~~~~-----------~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l 228 (347)
T 4fmz_A 169 DVTPI-----------ANLTDLYSLSLNYNQ-IEDISP----LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKI 228 (347)
T ss_dssp CCGGG-----------GGCTTCSEEECTTSC-CCCCGG----GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEEC
T ss_pred Cchhh-----------ccCCCCCEEEccCCc-cccccc----ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEc
Confidence 32221 135899999999874 443322 557899999999886 4555443 445899999999
Q ss_pred ccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccccc
Q 047829 254 QKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL 333 (407)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 333 (407)
++|.... ......+++|+.|+++++ .++.++ . +..+++|+.|++++|. +..++ .+..+++|
T Consensus 229 ~~n~l~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~--~---~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L 289 (347)
T 4fmz_A 229 GNNKITD-----------LSPLANLSQLTWLEIGTN-QISDIN--A---VKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQL 289 (347)
T ss_dssp CSSCCCC-----------CGGGTTCTTCCEEECCSS-CCCCCG--G---GTTCTTCCEEECCSSC-CCCCG-GGGGCTTC
T ss_pred cCCccCC-----------CcchhcCCCCCEEECCCC-ccCCCh--h---HhcCCCcCEEEccCCc-cCCCh-hhcCCCCC
Confidence 9886322 112567899999999985 555553 2 2348899999999984 55554 47889999
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
++|++++| .+....+ .....+++|+.|++++|+ +..++ .+..+++|++|++++++
T Consensus 290 ~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 290 NSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR---------PLASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCG---------GGGGCTTCSEESSSCC-
T ss_pred CEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-ccccc---------Chhhhhccceeehhhhc
Confidence 99999996 4555433 345678999999999994 55543 26678999999999986
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.4e-21 Score=197.84 Aligned_cols=326 Identities=11% Similarity=0.042 Sum_probs=170.7
Q ss_pred ccccCCccEEeecCCCcccc------------------cccccc--CCCCcceeEEEeecccccccccCcchhhHHHHHH
Q 047829 40 TLEFPSLERVSVTFCPDMKT------------------FSQGIL--STPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK 99 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 99 (407)
...+++|++|+++++ .+.. +|..++ ++++|++|++.++.- .+.+|.
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-------------~~~~p~ 267 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-------------LTKLPT 267 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-------------CSSCCT
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-------------CccChH
Confidence 446777888888877 4555 777777 777888887765211 112334
Q ss_pred hhcCCCCccEEEeccCCCcce--eccCCC-C-CccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 100 EMIGFRDIWYLQLSYFPRLKE--IWHGQA-L-PVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~--~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+..+++|++|+++++..++. .+.... + ....+++|+.|.+.+|... .++..+.++++++|+.|++++|.-...+
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 445555555555555542221 111110 0 0001255555555554433 3333123455555555555554321122
Q ss_pred eccCCccc-------------cccccCCCCCc-ccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCccc
Q 047829 176 FHLEELSA-------------KEEHIGPLFPS-LSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNST 241 (407)
Q Consensus 176 ~~~~~~~~-------------~~~~~~~~~~~-L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 241 (407)
+.+..... +-..+. .+++ |+.|+++++. +..++... ....+++|+.|+++++ .+.+..|..+
T Consensus 347 p~~~~l~~L~~L~L~~N~l~~lp~~l~-~l~~~L~~L~Ls~N~-l~~lp~~~-~~~~l~~L~~L~Ls~N-~l~~~~p~~l 422 (636)
T 4eco_A 347 PAFGSEIKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNK-LKYIPNIF-DAKSVSVMSAIDFSYN-EIGSVDGKNF 422 (636)
T ss_dssp CCCEEEEEESEEECCSSEEEECCTTSE-EECTTCCEEECCSSC-CSSCCSCC-CTTCSSCEEEEECCSS-CTTTTTTCSS
T ss_pred hhhCCCCCCCEEECCCCccccccHhhh-hhcccCcEEEccCCc-Ccccchhh-hhcccCccCEEECcCC-cCCCcchhhh
Confidence 21000000 000000 1244 5566655543 22332211 1112335666666554 3333322221
Q ss_pred c------cccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccc----ccccCCcCc
Q 047829 242 S------ILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES----NKVFANLKS 311 (407)
Q Consensus 242 ~------~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~----~~~~~~L~~ 311 (407)
. ..+++|++|+++++..- .+... ....+++|+.|+++++ .++.++...+.. ...+++|+.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQIS-KFPKE--------LFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCC-SCCTH--------HHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCE
T ss_pred cccccccccCCCCCEEECcCCccC-cCCHH--------HHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccE
Confidence 1 02446666666665422 11110 1234788999999984 566777665432 112338999
Q ss_pred eeeccCccccccccccc--cccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEec
Q 047829 312 PEISECSKLQKLVPASW--HLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFR 389 (407)
Q Consensus 312 L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~ 389 (407)
|+++++. ++.+|..+. .+++|++|+++++ .+..+ +.. ...+++|+.|++++|..+.. +...|..+..+..++
T Consensus 493 L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~i-p~~-~~~l~~L~~L~Ls~N~~ls~--N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 493 IDLRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SFSKF-PTQ-PLNSSTLKGFGIRNQRDAQG--NRTLREWPEGITLCP 566 (636)
T ss_dssp EECCSSC-CCBCCGGGSTTTCTTCCEEECCSS-CCSSC-CCG-GGGCSSCCEEECCSCBCTTC--CBCCCCCCTTGGGCS
T ss_pred EECcCCc-CCccChhhhhccCCCcCEEECCCC-CCCCc-Chh-hhcCCCCCEEECCCCccccc--CcccccChHHHhcCC
Confidence 9999875 557887776 8899999999984 56555 333 44789999999976531100 122334456777899
Q ss_pred ccceEecCCCC
Q 047829 390 KLEYLGLDCLP 400 (407)
Q Consensus 390 ~L~~L~l~~cp 400 (407)
+|++|+++++.
T Consensus 567 ~L~~L~Ls~N~ 577 (636)
T 4eco_A 567 SLTQLQIGSND 577 (636)
T ss_dssp SCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 99999999875
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1e-20 Score=195.68 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=49.3
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
+++|+.|+++++.....+|..++.+++|+.|+++++ .+....|. ....+++|+.|+++++. .+|..|..+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~-~l~~L~~L~~LdLs~N~--------l~g~ip~~l 700 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPD-EVGDLRGLNILDLSSNK--------LDGRIPQAM 700 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCG-GGGGCTTCCEEECCSSC--------CEECCCGGG
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCCh-HHhCCCCCCEEECCCCc--------ccCcCChHH
Confidence 455666677666544466666666777777777663 34433232 24456677777776662 223334555
Q ss_pred eEecccceEecCCC
Q 047829 386 IVFRKLEYLGLDCL 399 (407)
Q Consensus 386 ~~~~~L~~L~l~~c 399 (407)
..++.|++|+++++
T Consensus 701 ~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 701 SALTMLTEIDLSNN 714 (768)
T ss_dssp GGCCCCSEEECCSS
T ss_pred hCCCCCCEEECcCC
Confidence 56666777777665
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.4e-20 Score=177.73 Aligned_cols=309 Identities=13% Similarity=0.085 Sum_probs=199.4
Q ss_pred cceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccc-cccCCCCcceeEEEeecccccccccCcch
Q 047829 13 NRIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQ-GILSTPKLHKVQVIVKEEGELYHREGNLN 91 (407)
Q Consensus 13 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 91 (407)
....+++++.|++.++ .++.+|... ...+++|++|+++++ .+..++. .+..+++|++|++.++.
T Consensus 40 ~~~~l~~l~~l~l~~~-~l~~l~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~------------ 104 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA------------ 104 (390)
T ss_dssp SSGGGCCCSEEEEESC-EESEECTHH-HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC------------
T ss_pred cccccCCceEEEecCC-chhhCChhH-hcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC------------
Confidence 3446789999999985 577776543 457899999999999 5666654 67889999999996511
Q ss_pred hhHHHH-HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 92 STIQKC-YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 92 ~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
+..+ +..+..+++|++|+++++. +...+... + ..+++|+.|++++|.... ++ ...+..+++|+.|++++|.
T Consensus 105 --l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 105 --IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNNLER-IE-DDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp --CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSCCCB-CC-TTTTSSCTTCCEEECCSSC
T ss_pred --CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH-h--cCCCCCcEEECCCCccCc-cC-hhhccCCCCCCEEECCCCc
Confidence 1112 2345678999999999886 54433322 2 347899999999886543 32 2347889999999999874
Q ss_pred ccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCce
Q 047829 171 SLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADN 250 (407)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 250 (407)
+..+. ...+++|+.|++.++. +.. +...++|+.|++.++ .+..++... +++|+.
T Consensus 177 -l~~~~------------~~~l~~L~~L~l~~n~-l~~-------~~~~~~L~~L~l~~n-~l~~~~~~~----~~~L~~ 230 (390)
T 3o6n_A 177 -LTHVD------------LSLIPSLFHANVSYNL-LST-------LAIPIAVEELDASHN-SINVVRGPV----NVELTI 230 (390)
T ss_dssp -CSBCC------------GGGCTTCSEEECCSSC-CSE-------EECCSSCSEEECCSS-CCCEEECCC----CSSCCE
T ss_pred -CCccc------------cccccccceeeccccc-ccc-------cCCCCcceEEECCCC-eeeeccccc----cccccE
Confidence 33221 0135788888887642 322 223457778887764 354443322 567777
Q ss_pred eecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccc
Q 047829 251 KEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHL 330 (407)
Q Consensus 251 L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 330 (407)
|+++++.... ......+++|+.|+++++ .+..+....+.. +++|+.|+++++ .++.+|.....+
T Consensus 231 L~l~~n~l~~-----------~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~n-~l~~~~~~~~~l 294 (390)
T 3o6n_A 231 LKLQHNNLTD-----------TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVK---MQRLERLYISNN-RLVALNLYGQPI 294 (390)
T ss_dssp EECCSSCCCC-----------CGGGGGCTTCSEEECCSS-CCCEEESGGGTT---CSSCCEEECCSS-CCCEEECSSSCC
T ss_pred EECCCCCCcc-----------cHHHcCCCCccEEECCCC-cCCCcChhHccc---cccCCEEECCCC-cCcccCcccCCC
Confidence 7777764321 112456777888888774 445544444433 677778887775 355566656667
Q ss_pred cccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 331 ENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 331 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
++|++|++++| .+..+++ . ...+++|+.|++.+|. +..+ .+..+++|++|+++++|
T Consensus 295 ~~L~~L~L~~n-~l~~~~~-~-~~~l~~L~~L~L~~N~-i~~~----------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 295 PTLKVLDLSHN-HLLHVER-N-QPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp TTCCEEECCSS-CCCCCGG-G-HHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEECCSSC
T ss_pred CCCCEEECCCC-cceecCc-c-ccccCcCCEEECCCCc-ccee----------CchhhccCCEEEcCCCC
Confidence 77888888775 4554422 2 3456777788777773 3332 13456677777777654
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.2e-20 Score=183.40 Aligned_cols=330 Identities=13% Similarity=0.098 Sum_probs=187.6
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
++|++|+++++ +++..+... ...+++|++|+++++.....+ +..+..+++|++|++.++ .+..
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n--------------~l~~ 93 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN--------------QFLQ 93 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC--------------TTCE
T ss_pred CccCEEEecCC-ccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCC--------------ccCc
Confidence 67999999985 566664433 557899999999999544455 445788999999999541 1111
Q ss_pred -HHHhhcCCCCccEEEeccCCCcce-eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 97 -CYKEMIGFRDIWYLQLSYFPRLKE-IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 97 -l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
.|..+..+++|++|+++++. +.. ......+ ..+++|+.|++++|.... +.+...+..+++|++|++++|.- ..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l-~~ 168 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCN-LDGAVLSGNFF--KPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKV-KS 168 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTT--TTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCB-SC
T ss_pred cChhhccCcccCCEEeCCCCC-CCccccCcccc--cCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCCcc-cc
Confidence 24556778999999999987 332 2222112 347899999999887644 34444578899999999998753 22
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCC------CccccCCCccEEeEecCCCCccccCcccc------
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT------GNIIELPMFWSLTIENCPDMETFISNSTS------ 242 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~------~~~~~~~~L~~L~l~~c~~l~~~~~~~~~------ 242 (407)
+....... . ..++|+.|++.++. +..+.... .....+++|+.|+++++. +++..+..+.
T Consensus 169 ~~~~~l~~-----l--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 169 ICEEDLLN-----F--QGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGT 239 (455)
T ss_dssp CCTTTSGG-----G--TTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTC
T ss_pred cChhhhhc-----c--ccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhcccccc
Confidence 22110000 0 01344444444332 11111000 001122344444444431 1111111000
Q ss_pred --------------------------------cccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc
Q 047829 243 --------------------------------ILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH 290 (407)
Q Consensus 243 --------------------------------~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 290 (407)
...++|+.|+++++....... ..+..+++|+.|+++++
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n- 309 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK---------SVFSHFTDLEQLTLAQN- 309 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT---------TTTTTCTTCCEEECTTS-
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch---------hhcccCCCCCEEECCCC-
Confidence 012456666665554322111 12455678888888773
Q ss_pred ccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccch
Q 047829 291 KVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMM 370 (407)
Q Consensus 291 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l 370 (407)
.+..++...+.. +++|+.|+++++..-...+..+..+++|++|+++++ .+..+.+ .....+++|++|++++| .+
T Consensus 310 ~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 310 EINKIDDNAFWG---LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QL 383 (455)
T ss_dssp CCCEECTTTTTT---CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CC
T ss_pred cccccChhHhcC---cccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-cc
Confidence 455554444433 777888888876533333455667788888888774 4555533 23456778888888777 44
Q ss_pred hhhhccccCCcccceeEecccceEecCCCC
Q 047829 371 EEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
..++ +..+..+++|++|+++++|
T Consensus 384 ~~~~-------~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 384 KSVP-------DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SCCC-------TTTTTTCTTCCEEECCSSC
T ss_pred ccCC-------HhHhccCCcccEEEccCCC
Confidence 4443 2234567788888887654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=7.8e-21 Score=196.52 Aligned_cols=336 Identities=14% Similarity=0.015 Sum_probs=161.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccc-cCCCCcceeEEEeecccccccccCcchhhH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGI-LSTPKLHKVQVIVKEEGELYHREGNLNSTI 94 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (407)
.+++|++|+++++.--...+.......+++|++|++++|.....+|..+ .++++|++|++.++. +....
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~----------l~~~~ 167 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS----------ISGAN 167 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC----------CEEET
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc----------cCCcC
Confidence 3566666666665322223332224456667777776663333344333 556666666664311 10111
Q ss_pred HHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 95 QKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 95 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
......+..+++|++|+++++. +... .+...+++|+.|++++|.....+ +. ++++++|++|++++|.-...
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~-----~~~~~l~~L~~L~Ls~n~l~~~~-~~--l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNK-ISGD-----VDVSRCVNLEFLDVSSNNFSTGI-PF--LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSE-EESC-----CBCTTCTTCCEEECCSSCCCSCC-CB--CTTCCSCCEEECCSSCCCSC
T ss_pred ChhhhhhccCCCCCEEECCCCc-cccc-----CCcccCCcCCEEECcCCcCCCCC-cc--cccCCCCCEEECcCCcCCCc
Confidence 1111124566777777777765 2210 11134677788888777655432 22 67777777777777643222
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
++.. +. .+++|++|+++++.-...++. ..+++|++|++.+| .+++..+..+...+++|++|+++
T Consensus 239 ~~~~---------l~-~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 239 FSRA---------IS-TCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp HHHH---------TT-TCSSCCEEECCSSCCEESCCC-----CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECC
T ss_pred ccHH---------Hh-cCCCCCEEECCCCcccCccCc-----cccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECc
Confidence 1110 11 235666666665532222111 13555666666554 23333333333334555666555
Q ss_pred cccccchhhhc--------------ccccccc--ccccccCCcceEecccccccccccccccccccccC-CcCceeeccC
Q 047829 255 KLKSEENLLVA--------------DQIQHLF--DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFA-NLKSPEISEC 317 (407)
Q Consensus 255 ~~~~l~~~~~~--------------~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~-~L~~L~l~~c 317 (407)
+|.....++.. +.+.... ...+.+++|+.|+++++.-.+.++.. + ..++ +|+.|+++++
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l---~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-L---TNLSASLLTLDLSSN 378 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-H---HHHTTTCSEEECCSS
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-H---HhhhcCCcEEEccCC
Confidence 55432211111 0000000 01233455555555553222233322 1 1133 5555555555
Q ss_pred cccccccccccc--ccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEe
Q 047829 318 SKLQKLVPASWH--LENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLG 395 (407)
Q Consensus 318 ~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~ 395 (407)
.....+|..+.. +++|++|++++|. +....+ .....+++|+.|++++|. +. |..+..+..+++|++|+
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~Ls~N~-l~-------~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNG-FTGKIP-PTLSNCSELVSLHLSFNY-LS-------GTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSE-EEEECC-GGGGGCTTCCEEECCSSE-EE-------SCCCGGGGGCTTCCEEE
T ss_pred CcCCCcChhhhhcccCCccEEECCCCc-cccccC-HHHhcCCCCCEEECcCCc-cc-------CcccHHHhcCCCCCEEE
Confidence 433334443333 5566666666643 332222 234466777777777772 22 22345566788889888
Q ss_pred cCCCC
Q 047829 396 LDCLP 400 (407)
Q Consensus 396 l~~cp 400 (407)
+++|.
T Consensus 449 L~~n~ 453 (768)
T 3rgz_A 449 LWLNM 453 (768)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 87653
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=4.4e-20 Score=186.04 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=53.9
Q ss_pred ccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhc
Q 047829 277 TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 277 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
.+++|+.|+++++ .+..++...+.. +++|+.|+++++......+. .+..+++|++|++++| .+....+ .....
T Consensus 374 ~l~~L~~L~l~~n-~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~ 447 (606)
T 3t6q_A 374 NLSHLQSLNLSYN-EPLSLKTEAFKE---CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDG 447 (606)
T ss_dssp TCTTCCEEECCSC-SCEEECTTTTTT---CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTT
T ss_pred cCCCCCEEECCCC-cCCcCCHHHhcC---CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhC
Confidence 3445555555542 233333232222 55566666655543222222 2455666666666654 2333322 23345
Q ss_pred cccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 356 LVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 356 l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
+++|+.|++++|. +..... ..+..+..+++|++|++++|
T Consensus 448 l~~L~~L~L~~n~-l~~~~~----~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 448 LPALQHLNLQGNH-FPKGNI----QKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEEECTTCB-CGGGEE----CSSCGGGGCTTCCEEECTTS
T ss_pred CCCCCEEECCCCC-CCcccc----ccchhhccCCCccEEECCCC
Confidence 6666666666663 222100 01133556778888887765
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=6e-20 Score=172.09 Aligned_cols=283 Identities=15% Similarity=0.168 Sum_probs=208.5
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|++|+++++ ++..++. ...+++|++|++++| .+..++ .+..+++|++|++.++.
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-------------- 121 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-------------- 121 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC--------------
T ss_pred hhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc--------------
Confidence 445889999999997 5766654 457899999999999 777776 68999999999996411
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
+..++. +..+++|++|+++++........ + ..+++|+.|.+.+|.... +++ +..+++|+.|++++|. +.
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~---~--~~l~~L~~L~l~~~~~~~-~~~---~~~l~~L~~L~l~~n~-l~ 190 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSP---L--SNMTGLNYLTVTESKVKD-VTP---IANLTDLYSLSLNYNQ-IE 190 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGG---G--TTCTTCCEEECCSSCCCC-CGG---GGGCTTCSEEECTTSC-CC
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccc---h--hhCCCCcEEEecCCCcCC-chh---hccCCCCCEEEccCCc-cc
Confidence 111222 56789999999999976664332 1 447999999999986543 222 7899999999999874 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
.+..+ ..+++|+.|++.++. +..+.. +..+++|+.|++++| .++..++ ...+++|++|++
T Consensus 191 ~~~~~-----------~~l~~L~~L~l~~n~-l~~~~~----~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l 250 (347)
T 4fmz_A 191 DISPL-----------ASLTSLHYFTAYVNQ-ITDITP----VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEI 250 (347)
T ss_dssp CCGGG-----------GGCTTCCEEECCSSC-CCCCGG----GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEEC
T ss_pred ccccc-----------cCCCccceeecccCC-CCCCch----hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEEC
Confidence 33221 135899999998863 333221 557899999999987 4555544 446899999999
Q ss_pred ccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccccc
Q 047829 254 QKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL 333 (407)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 333 (407)
++|... .+ +....+++|+.|+++++ .++.++. +..+++|+.|++++|......+..+..+++|
T Consensus 251 ~~n~l~-~~----------~~~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 251 GTNQIS-DI----------NAVKDLTKLKMLNVGSN-QISDISV-----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp CSSCCC-CC----------GGGTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred CCCccC-CC----------hhHhcCCCcCEEEccCC-ccCCChh-----hcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 988532 21 22567899999999995 5555532 2348999999999987555555667889999
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++|++++|+ +...++ ...+++|+.|++++|+
T Consensus 314 ~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 314 TTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 999999965 666533 5578999999999884
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=4.5e-20 Score=185.95 Aligned_cols=266 Identities=14% Similarity=0.043 Sum_probs=137.2
Q ss_pred hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCC
Q 047829 101 MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEE 180 (407)
Q Consensus 101 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 180 (407)
+..+++|++|+++++. +...+... ..+++|+.|.+.+|..... ++ ..+..+++|+.|++++|.....++..
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l----~~l~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~l~~n~~~~~~~~~-- 344 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGL----VGLSTLKKLVLSANKFENL-CQ-ISASNFPSLTHLSIKGNTKRLELGTG-- 344 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSC----CSCTTCCEEECTTCCCSBG-GG-GCGGGCTTCSEEECCSCSSCCBCCSS--
T ss_pred hccccCCCEEeccCCc-cCCCChhh----cccccCCEEECccCCcCcC-ch-hhhhccCcCCEEECCCCCcccccchh--
Confidence 5567889999999885 54443332 4478888888888765432 22 34677888888888877533222210
Q ss_pred ccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc
Q 047829 181 LSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE 260 (407)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 260 (407)
.+. .+++|++|+++++. +..+......+..+++|+.|+++++ .+....+.. ...+++|++|+++++....
T Consensus 345 ------~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 345 ------CLE-NLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEA-FKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp ------TTT-TCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTT-TTTCTTCSEEECTTCCEEC
T ss_pred ------hhh-ccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC-cCCcCCHHH-hcCCccCCeEECCCCcCCC
Confidence 011 23666666666543 2221110112334556666666553 233333322 2235555555555543221
Q ss_pred hhhhc---------------ccccc-ccccccccCCcceEeccccccccc--ccc-cccccccccCCcCceeeccCcccc
Q 047829 261 NLLVA---------------DQIQH-LFDEKVTFPQLRFLELSRLHKVQH--LWK-ENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 261 ~~~~~---------------~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~--l~~-~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
...+. +.+.. .....+.+++|+.|+++++. +.. ++. ..+ ..+++|+.|++++|....
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSL---QTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGG---GGCTTCCEEECTTSCCCE
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhh---ccCCCccEEECCCCccCc
Confidence 11000 00000 01113445666666666642 222 111 112 236667777776664333
Q ss_pred ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 322 KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 322 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
..|..+..+++|++|+++++ .+....+ .....++.| .|++++| .+..+ .+..+..+++|++|+++++|
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L-~L~L~~N-~l~~~-------~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI-YLNLASN-HISII-------LPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-EEECCSS-CCCCC-------CGGGHHHHHTSSEEECTTCC
T ss_pred cChhhhccccCCCEEECCCC-ccCcCCh-hHhCccccc-EEECcCC-ccccc-------CHhhcccCCCCCEEeCCCCC
Confidence 33455566677777777663 4444422 233456666 6666666 23222 23445667888888888876
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=6e-20 Score=189.94 Aligned_cols=339 Identities=12% Similarity=0.073 Sum_probs=192.6
Q ss_pred eecccceeeeCccccccc------------------ccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEe
Q 047829 16 AFSELKFLILDYLPRLTS------------------FCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIV 77 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 77 (407)
.+++|+.|+++++. +.. +|.......+++|++|++++|.....+|..++++++|++|++.+
T Consensus 446 ~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 446 RLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred cCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 47899999999964 665 55442122789999999999977888999999999999999964
Q ss_pred ecccccccccC-cchhhHHHHHHhhcCCCCccEEEeccCCCcceecc--CCCCCccccCCceEEEEecCCCCCcCCccch
Q 047829 78 KEEGELYHREG-NLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH--GQALPVSFFNNLCKLVVDDCTNMSSAIPVNL 154 (407)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 154 (407)
+.. ..+ .++..+..+...+..+++|++|+++++. +..++. .. ..+++|+.|.+++|... .++ .
T Consensus 525 N~~-----lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l----~~L~~L~~L~Ls~N~l~-~lp---~ 590 (876)
T 4ecn_A 525 NRG-----ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL----QKMVKLGLLDCVHNKVR-HLE---A 590 (876)
T ss_dssp CTT-----SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH----TTCTTCCEEECTTSCCC-BCC---C
T ss_pred CCC-----cccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh----hcCCCCCEEECCCCCcc-cch---h
Confidence 210 001 2333444444344455678888877765 333222 11 33667777777766544 433 2
Q ss_pred hhccccCCeeEEccccccceeeccCCccccccccCCCCCc-ccEEeccccccccccccCC--------------------
Q 047829 155 LRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPS-LSWLRLIDLPKLKRFCNFT-------------------- 213 (407)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~i~~~~-------------------- 213 (407)
++.+++|+.|++++|. +..++.. +. .+++ |+.|+++++. +..++...
T Consensus 591 ~~~L~~L~~L~Ls~N~-l~~lp~~---------l~-~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQ-IEEIPED---------FC-AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCTTSEESEEECCSSC-CSCCCTT---------SC-EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hcCCCcceEEECcCCc-cccchHH---------Hh-hccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCC
Confidence 5666677777776653 2222210 00 1233 4444444432 22221100
Q ss_pred ------Ccc--ccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEe
Q 047829 214 ------GNI--IELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLE 285 (407)
Q Consensus 214 ------~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 285 (407)
... ...++|+.|+++++ .++.++ ..+...+++|+.|+++++..- .+.... ..........+++|+.|+
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~~L~Ls~N~L~-~ip~~~-~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYN-EIQKFP-TELFATGSPISTIILSNNLMT-SIPENS-LKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSS-CCCSCC-HHHHHTTCCCSEEECCSCCCS-CCCTTS-SSCTTSCCTTGGGCCEEE
T ss_pred ccccchhhhccccCCCcCEEEccCC-cCCccC-HHHHccCCCCCEEECCCCcCC-ccChHH-hccccccccccCCccEEE
Confidence 000 12235666666554 344332 223334667777777665322 221110 000000112344888888
Q ss_pred cccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCc-----CcccccCchhhhccccCC
Q 047829 286 LSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCH-----GLINLLTLSTSESLVNLE 360 (407)
Q Consensus 286 L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~l~~L~ 360 (407)
++++ .++.+|..... ..+++|+.|+++++. +..+|..+..+++|+.|++++++ .+....+. ....+++|+
T Consensus 735 Ls~N-~L~~lp~~l~~--~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~ 809 (876)
T 4ecn_A 735 LRFN-KLTSLSDDFRA--TTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLI 809 (876)
T ss_dssp CCSS-CCCCCCGGGST--TTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCC
T ss_pred CCCC-CCccchHHhhh--ccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCC
Confidence 8884 55666654320 137788888888764 45577777888888888887632 23333232 345688888
Q ss_pred EEEEecccchhhhhccccCCcccceeEecccceEecCCCCC
Q 047829 361 RMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS 401 (407)
Q Consensus 361 ~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~ 401 (407)
.|++++| .+..++ ..+ +++|+.|+++++|.
T Consensus 810 ~L~Ls~N-~L~~Ip--------~~l--~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 810 QLQIGSN-DIRKVD--------EKL--TPQLYILDIADNPN 839 (876)
T ss_dssp EEECCSS-CCCBCC--------SCC--CSSSCEEECCSCTT
T ss_pred EEECCCC-CCCccC--------Hhh--cCCCCEEECCCCCC
Confidence 8888888 345554 222 36888888888874
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.6e-20 Score=190.05 Aligned_cols=344 Identities=11% Similarity=0.045 Sum_probs=207.9
Q ss_pred eecccceeeeCccccccc------------------ccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEe
Q 047829 16 AFSELKFLILDYLPRLTS------------------FCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIV 77 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 77 (407)
.+++|++|+++++. +.. +|.......+++|++|++++|.....+|..++++++|++|++.+
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 47899999999975 666 55542112789999999999977788999999999999999964
Q ss_pred ecccccccccCcchhhHH-HHHHhhcCC------CCccEEEeccCCCcceecc--CCCCCccccCCceEEEEecCCCCCc
Q 047829 78 KEEGELYHREGNLNSTIQ-KCYKEMIGF------RDIWYLQLSYFPRLKEIWH--GQALPVSFFNNLCKLVVDDCTNMSS 148 (407)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~------~~L~~L~l~~~~~l~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 148 (407)
+.. + -. .+|..+..+ ++|++|+++++. +..++. .. ..+++|+.|++++|.....
T Consensus 283 n~~---------l---~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l----~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 283 NRG---------I---SGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL----QKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CTT---------S---CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH----TTCTTCCEEECCSCCCEEE
T ss_pred CCC---------C---ccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh----ccCCCCCEEeCcCCcCccc
Confidence 210 0 01 234333332 666666666654 222221 11 2345566666655544323
Q ss_pred CCccchhhccccCCeeEEccccccceeec-cCCccc-----------cccccCC-----CCCcccEEecccccccccccc
Q 047829 149 AIPVNLLRCLNNLGWLEVRNCDSLEEVFH-LEELSA-----------KEEHIGP-----LFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 149 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~-----------~~~~~~~-----~~~~L~~L~l~~~~~l~~i~~ 211 (407)
++ .+..+++|+.|++++|. +..++. +..... +. .++. .+++|+.|+++++.-...++.
T Consensus 346 ip---~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 346 LP---AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp CC---CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred hh---hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 33 23444455555554432 111111 000000 00 0111 134899999998753332211
Q ss_pred CC----CccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecc
Q 047829 212 FT----GNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELS 287 (407)
Q Consensus 212 ~~----~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 287 (407)
.. .....+++|+.|+++++ .++.++. .+...+++|++|+++++... .+.... +.........+++|+.|+++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNMLT-EIPKNS-LKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSCCS-BCCSSS-SEETTEECTTGGGCCEEECC
T ss_pred hhcccccccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCCCC-CcCHHH-hccccccccccCCccEEECc
Confidence 10 01114569999999985 5665544 44556899999999987643 322110 00000012234499999999
Q ss_pred cccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC-----cCcccccCchhhhccccCCEE
Q 047829 288 RLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC-----HGLINLLTLSTSESLVNLERM 362 (407)
Q Consensus 288 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c-----~~l~~~~~~~~~~~l~~L~~L 362 (407)
++ .++.++..... ..+++|+.|+++++. +..+|..+..+++|++|+++++ +.+....+. ....+++|+.|
T Consensus 497 ~N-~l~~lp~~~~~--~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L 571 (636)
T 4eco_A 497 FN-KLTKLSDDFRA--TTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQL 571 (636)
T ss_dssp SS-CCCBCCGGGST--TTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEE
T ss_pred CC-cCCccChhhhh--ccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEE
Confidence 94 56677765330 138999999999975 4558888999999999999653 233333333 34578999999
Q ss_pred EEecccchhhhhccccCCcccceeEecccceEecCCCCCc
Q 047829 363 KITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSL 402 (407)
Q Consensus 363 ~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l 402 (407)
++++| .+..++ ..+ +++|++|+++++|-.
T Consensus 572 ~Ls~N-~l~~ip--------~~~--~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 572 QIGSN-DIRKVN--------EKI--TPNISVLDIKDNPNI 600 (636)
T ss_dssp ECCSS-CCCBCC--------SCC--CTTCCEEECCSCTTC
T ss_pred ECCCC-cCCccC--------HhH--hCcCCEEECcCCCCc
Confidence 99999 445554 322 389999999999743
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=2.5e-20 Score=192.76 Aligned_cols=322 Identities=11% Similarity=0.019 Sum_probs=209.0
Q ss_pred ccccCCccEEeecCCCcccc------------------cccccc--CCCCcceeEEEeecccccccccCcchhhHHHHHH
Q 047829 40 TLEFPSLERVSVTFCPDMKT------------------FSQGIL--STPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK 99 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 99 (407)
...+++|++|+++++ .+.. +|..++ ++++|++|++.++. ..+.+|.
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-------------l~~~iP~ 509 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-------------NMTQLPD 509 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-------------TCCSCCG
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-------------CCccChH
Confidence 557899999999999 5666 898888 99999999997521 1223566
Q ss_pred hhcCCCCccEEEeccCCCcce--eccCC-CC--CccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 100 EMIGFRDIWYLQLSYFPRLKE--IWHGQ-AL--PVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~--~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
.+..+++|++|+++++..++. .+... .+ ....+++|+.|.+.+|... .++..+.++++++|+.|++++|. +..
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~ 587 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRH 587 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCB
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-ccc
Confidence 677889999999999874442 22110 00 0023579999999998766 55552358999999999999875 334
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCC-ccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPM-FWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
++.+ . .+++|+.|+++++. +..++. .+..+++ |+.|++.++. ++.++........++|+.|++
T Consensus 588 lp~~----------~-~L~~L~~L~Ls~N~-l~~lp~---~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 588 LEAF----------G-TNVKLTDLKLDYNQ-IEEIPE---DFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp CCCC----------C-TTSEESEEECCSSC-CSCCCT---TSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEEC
T ss_pred chhh----------c-CCCcceEEECcCCc-cccchH---HHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEEC
Confidence 4311 1 35899999998874 444433 2446777 9999998864 555542211111234788888
Q ss_pred ccccccchhhhc-------------------cccccccc-cc-cccCCcceEeccccccccccccccccc----ccccCC
Q 047829 254 QKLKSEENLLVA-------------------DQIQHLFD-EK-VTFPQLRFLELSRLHKVQHLWKENAES----NKVFAN 308 (407)
Q Consensus 254 ~~~~~l~~~~~~-------------------~~~~~~~~-~~-~~l~~L~~L~L~~~~~l~~l~~~~~~~----~~~~~~ 308 (407)
+++.....+... +.+. ..+ .. ..+++|+.|+++++ .+..++...+.. ...+++
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCC
Confidence 776543221100 0011 111 11 24678888888884 566666654431 112348
Q ss_pred cCceeeccCccccccccccc--cccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCccccee
Q 047829 309 LKSPEISECSKLQKLVPASW--HLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCI 386 (407)
Q Consensus 309 L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~ 386 (407)
|+.|++++| .+..+|..+. .+++|+.|+++++ .+..+ +.. ...+++|+.|++++|+.+.. +...|..+..+.
T Consensus 730 L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~--N~l~~~ip~~l~ 803 (876)
T 4ecn_A 730 LTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSF-PTQ-PLNSSQLKAFGIRHQRDAEG--NRILRQWPTGIT 803 (876)
T ss_dssp CCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSC-CCG-GGGCTTCCEEECCCCBCTTC--CBCCCCCCTTGG
T ss_pred ccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCcc-chh-hhcCCCCCEEECCCCCCccc--ccccccChHHHh
Confidence 899999887 4567887776 8899999999884 55555 333 44788999999987541110 122344456777
Q ss_pred EecccceEecCCCCC
Q 047829 387 VFRKLEYLGLDCLPS 401 (407)
Q Consensus 387 ~~~~L~~L~l~~cp~ 401 (407)
.+++|++|++++|.-
T Consensus 804 ~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI 818 (876)
T ss_dssp GCSSCCEEECCSSCC
T ss_pred cCCCCCEEECCCCCC
Confidence 899999999998753
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=9e-20 Score=183.80 Aligned_cols=192 Identities=16% Similarity=0.037 Sum_probs=95.8
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhh-hc-----
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLL-VA----- 265 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~----- 265 (407)
+++|+.|+++++. +..+......+..+++|+.|++++|. ++.++ . ....+++|+.|+++++....... ..
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-A-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-C-CCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred CCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccch-h-hccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 4566666666542 22111001123345666666666643 44433 1 22336666666666654322111 00
Q ss_pred ---------ccccc-ccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCE
Q 047829 266 ---------DQIQH-LFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLAT 335 (407)
Q Consensus 266 ---------~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 335 (407)
+.+.. .......+++|+.|+++++.-...+....+. .+++|+.|++++|......|..+..+++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---NTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc---cCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 00000 1112344566666666664322212222222 2667777777776443334445666777777
Q ss_pred EEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEec-ccceEecCCCCC
Q 047829 336 LKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFR-KLEYLGLDCLPS 401 (407)
Q Consensus 336 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~-~L~~L~l~~cp~ 401 (407)
|++++| .+....+ .....+++|+.|++++| .+..++ ..+..++ +|++|+++++|-
T Consensus 502 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~p--------~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFN-RIETSK--------GILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSS-CCSCEEG-GGTTTCTTCCEEECTTS-CCCCEE--------SCGGGSCTTCCEEECCSCCC
T ss_pred EECCCC-cCCCcCH-HHccCCCcCCEEECCCC-cCcccC--------HhHhhhcccCcEEEccCCCc
Confidence 777764 4444422 23445677777777777 344444 3344555 488888877653
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=5.7e-20 Score=184.79 Aligned_cols=307 Identities=13% Similarity=0.081 Sum_probs=196.1
Q ss_pred eeecccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 15 IAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 15 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
..+.+++.|++.++ .+..+|... ...+++|++|+++++ .+..++ ..+..+++|++|++.++.
T Consensus 48 l~l~~l~~l~l~~~-~l~~lp~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-------------- 110 (597)
T 3oja_B 48 ITLNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-------------- 110 (597)
T ss_dssp GGGCCCSEEEESSC-EESEECTHH-HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC--------------
T ss_pred ccCCCceEEEeeCC-CCCCcCHHH-HccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc--------------
Confidence 35678899999885 577776553 457899999999999 566665 478889999999996511
Q ss_pred HHHHH-HhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccc
Q 047829 94 IQKCY-KEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSL 172 (407)
Q Consensus 94 ~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (407)
+..++ ..+..+++|++|+++++. +...+... | ..+++|+.|.+++|.... +++ ..+..+++|+.|++++|. +
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~Ls~N~l~~-~~~-~~~~~l~~L~~L~L~~N~-l 183 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNNLER-IED-DTFQATTSLQNLQLSSNR-L 183 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSCCCB-CCT-TTTTTCTTCCEEECTTSC-C
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-h--ccCCCCCEEEeeCCcCCC-CCh-hhhhcCCcCcEEECcCCC-C
Confidence 11222 235678999999999986 55443332 2 347899999999986644 333 347889999999999874 3
Q ss_pred ceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceee
Q 047829 173 EEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKE 252 (407)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 252 (407)
..++ ...+++|+.|++.++ .+.. +..+++|+.|+++++ .+..++... .++|+.|+
T Consensus 184 ~~~~------------~~~l~~L~~L~l~~n-~l~~-------l~~~~~L~~L~ls~n-~l~~~~~~~----~~~L~~L~ 238 (597)
T 3oja_B 184 THVD------------LSLIPSLFHANVSYN-LLST-------LAIPIAVEELDASHN-SINVVRGPV----NVELTILK 238 (597)
T ss_dssp SBCC------------GGGCTTCSEEECCSS-CCSE-------EECCTTCSEEECCSS-CCCEEECSC----CSCCCEEE
T ss_pred CCcC------------hhhhhhhhhhhcccC-cccc-------ccCCchhheeeccCC-ccccccccc----CCCCCEEE
Confidence 3321 113578888888764 2222 223456777777764 344444322 46777777
Q ss_pred cccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccc
Q 047829 253 PQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLEN 332 (407)
Q Consensus 253 l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 332 (407)
++++.... ...+..+++|+.|+++++ .+..+....+.. +++|+.|+++++. +..+|.....+++
T Consensus 239 L~~n~l~~-----------~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~---l~~L~~L~Ls~N~-l~~l~~~~~~l~~ 302 (597)
T 3oja_B 239 LQHNNLTD-----------TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVK---MQRLERLYISNNR-LVALNLYGQPIPT 302 (597)
T ss_dssp CCSSCCCC-----------CGGGGGCTTCSEEECCSS-CCCEEESGGGTT---CSSCCEEECTTSC-CCEEECSSSCCTT
T ss_pred CCCCCCCC-----------ChhhccCCCCCEEECCCC-ccCCCCHHHhcC---ccCCCEEECCCCC-CCCCCcccccCCC
Confidence 77664321 122455677777777773 444444333333 6777777777753 5556666666777
Q ss_pred cCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 333 LATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 333 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
|++|++++| .+..++ .. ...+++|+.|++++|. +..+ .+..+++|++|+++++|
T Consensus 303 L~~L~Ls~N-~l~~i~-~~-~~~l~~L~~L~L~~N~-l~~~----------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 303 LKVLDLSHN-HLLHVE-RN-QPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCEEECCSS-CCCCCG-GG-HHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEECCSSC
T ss_pred CcEEECCCC-CCCccC-cc-cccCCCCCEEECCCCC-CCCc----------ChhhcCCCCEEEeeCCC
Confidence 777777774 444442 22 3456777777777773 3222 13456677777777665
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=7.8e-20 Score=178.87 Aligned_cols=298 Identities=18% Similarity=0.144 Sum_probs=196.1
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
++++.|+++++ +++.++... ...+++|++|+++++ .+..+ |..+..+++|++|++.+ +.+..
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~--------------n~l~~ 94 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRS--------------NRLKL 94 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS--------------SCCCS
T ss_pred CCCcEEECCCC-ccceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCC--------------CcCCc
Confidence 57888888885 566665433 457889999999988 55554 66778888999998854 11222
Q ss_pred HHH-hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 97 CYK-EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 97 l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
++. .+..+++|++|+++++. +....... | ..+++|+.|.+.+|.... +.+ ..+..+++|+.|++++|. +..+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~l~~n~l~~-~~~-~~~~~l~~L~~L~l~~n~-l~~~ 167 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENK-IVILLDYM-F--QDLYNLKSLEVGDNDLVY-ISH-RAFSGLNSLEQLTLEKCN-LTSI 167 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEEECCTTCCE-ECT-TSSTTCTTCCEEEEESCC-CSSC
T ss_pred cCcccccCCCCCCEEECCCCc-cccCChhH-c--cccccCCEEECCCCccce-eCh-hhccCCCCCCEEECCCCc-Cccc
Confidence 333 24567889999998876 33332222 2 347889999998876543 222 346788889999998874 3332
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
+.. .+. .+++|+.|++.++. +..+.. ..+..+++|+.|++.+|+.+..+++..+ ...+|++|++++
T Consensus 168 ~~~--------~l~-~l~~L~~L~l~~n~-i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~ 233 (477)
T 2id5_A 168 PTE--------ALS-HLHGLIVLRLRHLN-INAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITH 233 (477)
T ss_dssp CHH--------HHT-TCTTCCEEEEESCC-CCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEES
T ss_pred Chh--------Hhc-ccCCCcEEeCCCCc-CcEeCh--hhcccCcccceeeCCCCccccccCcccc--cCccccEEECcC
Confidence 210 011 24788888888753 333221 2355678899999988877777655432 245888888887
Q ss_pred ccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCE
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLAT 335 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 335 (407)
+..- .+.. ..+..+++|+.|+++++ .++.++...+.. +++|+.|+++++......|..+..+++|++
T Consensus 234 n~l~-~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 234 CNLT-AVPY--------LAVRHLVYLRFLNLSYN-PISTIEGSMLHE---LLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp SCCC-SCCH--------HHHTTCTTCCEEECCSS-CCCEECTTSCTT---CTTCCEEECCSSCCSEECTTTBTTCTTCCE
T ss_pred Cccc-ccCH--------HHhcCccccCeeECCCC-cCCccChhhccc---cccCCEEECCCCccceECHHHhcCcccCCE
Confidence 7532 2211 12456788999999884 466666655544 788999999887544444556778889999
Q ss_pred EEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 336 LKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 336 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
|+++++ .+..++ ......+++|+.|++.+++
T Consensus 301 L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 301 LNVSGN-QLTTLE-ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSS-CCSCCC-GGGBSCGGGCCEEECCSSC
T ss_pred EECCCC-cCceeC-HhHcCCCcccCEEEccCCC
Confidence 999884 666663 3445567888988887763
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=8.3e-20 Score=184.06 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=45.1
Q ss_pred cCCcCceeeccCcccc-ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccc
Q 047829 306 FANLKSPEISECSKLQ-KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAED 384 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~ 384 (407)
+++|+.|++++|.... .+|..+..+++|++|++++| .+...++ .....+++|+.|++++| .+..+ .+..
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~-------~~~~ 516 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHN-NLLFL-------DSSH 516 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCE-------EGGG
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCC-cCCCc-------CHHH
Confidence 4555555555554322 13444555666666666654 3333322 22345566666666666 23222 1244
Q ss_pred eeEecccceEecCCCC
Q 047829 385 CIVFRKLEYLGLDCLP 400 (407)
Q Consensus 385 ~~~~~~L~~L~l~~cp 400 (407)
+..+++|++|+++++.
T Consensus 517 ~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred ccCCCcCCEEECCCCc
Confidence 5566778888777663
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=2.9e-19 Score=176.76 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=97.4
Q ss_pred cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc--hhhhccccccccccccccCCcceEeccccccccc-
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE--NLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQH- 294 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~- 294 (407)
.+++|+.|+++++ .+++..+.. ...+++|++|+++++.... .++. ..+.+++|+.|+++++. +..
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~---------~~~~l~~L~~L~Ls~N~-l~~~ 389 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMNQLKELSKIAE---------MTTQMKSLQQLDISQNS-VSYD 389 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHH---------HHTTCTTCCEEECCSSC-CBCC
T ss_pred hCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCCccCccccchH---------HHhhCCCCCEEECCCCc-CCcc
Confidence 4566777777664 344433333 2346677777776665322 1111 14567888888888843 444
Q ss_pred ccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhh
Q 047829 295 LWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEII 374 (407)
Q Consensus 295 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 374 (407)
++...+.. +++|+.|++++|.....+|..+. ++|++|++++| .+..+ +..+. .+++|+.|++++| .+..++
T Consensus 390 l~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 390 EKKGDCSW---TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp GGGCSCCC---CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSS-CCCCCC
T ss_pred cccchhcc---CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCC-cCCccC
Confidence 66554443 67888888888765445544332 68899999885 56655 33333 7889999999888 555554
Q ss_pred ccccCCcccceeEecccceEecCCCC
Q 047829 375 QSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 375 ~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
...+..+++|++|+++++|
T Consensus 461 -------~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 461 -------DGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -------TTTTTTCTTCCEEECCSSC
T ss_pred -------HHHhccCCcccEEECcCCC
Confidence 1125567889999998876
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=2.4e-19 Score=175.45 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=14.5
Q ss_pred ccCCccEEeecCCCcccccccc-ccCCCCcceeEE
Q 047829 42 EFPSLERVSVTFCPDMKTFSQG-ILSTPKLHKVQV 75 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l 75 (407)
.+++|++|+++++ .+..+|.. +..+++|++|++
T Consensus 78 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 78 NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEEC
T ss_pred CCccCCEEECCCC-cCCccCcccccCCCCCCEEEC
Confidence 3444444444444 34444332 234444444444
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=5.6e-19 Score=172.28 Aligned_cols=302 Identities=15% Similarity=0.160 Sum_probs=164.2
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|+.|++.++ .++.++. ...+++|++|++++| .+..+|. +..+++|++|++.++. +.
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~~---~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~--------------l~ 103 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ--------------IA 103 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC--------------CC
T ss_pred HhccccEEecCCC-CCccCcc---hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc--------------cc
Confidence 3678888888875 4555542 346788888888888 6767765 7788888888885411 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.++. +..+++|++|+++++. +..... + ..+++|+.|++++|... .++ .+..+++|+.|++.+ .+..+
T Consensus 104 ~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~--~~l~~L~~L~l~~n~l~-~~~---~~~~l~~L~~L~l~~--~~~~~ 170 (466)
T 1o6v_A 104 DITP-LANLTNLTGLTLFNNQ-ITDIDP---L--KNLTNLNRLELSSNTIS-DIS---ALSGLTSLQQLSFGN--QVTDL 170 (466)
T ss_dssp CCGG-GTTCTTCCEEECCSSC-CCCCGG---G--TTCTTCSEEEEEEEEEC-CCG---GGTTCTTCSEEEEEE--SCCCC
T ss_pred cChh-hcCCCCCCEEECCCCC-CCCChH---H--cCCCCCCEEECCCCccC-CCh---hhccCCcccEeecCC--cccCc
Confidence 1122 4566777777777764 333221 1 33677777777776533 221 245566666666642 11111
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCc----------------
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISN---------------- 239 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---------------- 239 (407)
..+ . .+++|+.|+++++. +..+. .+..+++|+.|++.+|. +....+.
T Consensus 171 ~~~----------~-~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 171 KPL----------A-NLTTLERLDISSNK-VSDIS----VLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL 233 (466)
T ss_dssp GGG----------T-TCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhh----------c-cCCCCCEEECcCCc-CCCCh----hhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc
Confidence 110 0 23455555555432 22211 12234444444444432 2222210
Q ss_pred ---ccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeecc
Q 047829 240 ---STSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISE 316 (407)
Q Consensus 240 ---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~ 316 (407)
.....+++|++|++++|.... ..+...+++|+.|+++++ .+..++. + ..+++|+.|++++
T Consensus 234 ~~~~~l~~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 234 KDIGTLASLTNLTDLDLANNQISN-----------LAPLSGLTKLTELKLGAN-QISNISP--L---AGLTALTNLELNE 296 (466)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCC-----------CGGGTTCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCS
T ss_pred ccchhhhcCCCCCEEECCCCcccc-----------chhhhcCCCCCEEECCCC-ccCcccc--c---cCCCccCeEEcCC
Confidence 012234555555554443211 111445667777777763 3444332 2 2367777777777
Q ss_pred CccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEec
Q 047829 317 CSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 396 (407)
Q Consensus 317 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l 396 (407)
|. +..+++ +..+++|++|++++| .+....+ ...+++|+.|++++| .+..+. .+..+++|++|++
T Consensus 297 n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~---------~l~~l~~L~~L~l 360 (466)
T 1o6v_A 297 NQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS---------SLANLTNINWLSA 360 (466)
T ss_dssp SC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEEC
T ss_pred Cc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch---------hhccCCCCCEEeC
Confidence 64 444443 567778888888775 4444422 346778888888877 343332 3456788888888
Q ss_pred CCCC
Q 047829 397 DCLP 400 (407)
Q Consensus 397 ~~cp 400 (407)
++|+
T Consensus 361 ~~n~ 364 (466)
T 1o6v_A 361 GHNQ 364 (466)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7653
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=7.9e-19 Score=171.22 Aligned_cols=307 Identities=15% Similarity=0.165 Sum_probs=196.9
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|++|+++++ .++.++. ...+++|++|++++| .+..++. +..+++|++|++.++.
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-------------- 123 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ-------------- 123 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC--------------
T ss_pred hhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCC--------------
Confidence 345788999999886 4666554 446788888888887 5666664 7778888888885421
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceecc-CC---------------CCCccccCCceEEEEecCCCCCcCCccchhhc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWH-GQ---------------ALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRC 157 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~---------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 157 (407)
+..++. +..+++|++|+++++. +..... .. ..+-..+++|+.|++++|... .+ ..+..
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~---~~l~~ 197 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DI---SVLAK 197 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CC---GGGGG
T ss_pred CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CC---hhhcc
Confidence 111111 4455666666666553 221110 00 000023556666666665432 22 12566
Q ss_pred cccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcccc
Q 047829 158 LNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFI 237 (407)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 237 (407)
+++|+.|++++|. +..+... ..+++|+.|++.++. +..+ ..+..+++|+.|++.+|. +...+
T Consensus 198 l~~L~~L~l~~n~-l~~~~~~-----------~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~ 259 (466)
T 1o6v_A 198 LTNLESLIATNNQ-ISDITPL-----------GILTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQ-ISNLA 259 (466)
T ss_dssp CTTCSEEECCSSC-CCCCGGG-----------GGCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCCCG
T ss_pred CCCCCEEEecCCc-ccccccc-----------cccCCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCCc-cccch
Confidence 6666666666653 2221110 125788888888763 3332 235578999999999864 55554
Q ss_pred CcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccC
Q 047829 238 SNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISEC 317 (407)
Q Consensus 238 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c 317 (407)
+ ...+++|++|+++++.... ..+...+++|+.|+++++ .+..++. +..+++|+.|++++|
T Consensus 260 ~---~~~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 260 P---LSGLTKLTELKLGANQISN-----------ISPLAGLTALTNLELNEN-QLEDISP-----ISNLKNLTYLTLYFN 319 (466)
T ss_dssp G---GTTCTTCSEEECCSSCCCC-----------CGGGTTCTTCSEEECCSS-CCSCCGG-----GGGCTTCSEEECCSS
T ss_pred h---hhcCCCCCEEECCCCccCc-----------cccccCCCccCeEEcCCC-cccCchh-----hcCCCCCCEEECcCC
Confidence 3 4458999999998875322 112566899999999995 4555543 234899999999998
Q ss_pred ccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 318 SKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 318 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
. +..+++ +..+++|++|++++| .+... .....+++|+.|++++|. +.... ++..+++|++|+++
T Consensus 320 ~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 320 N-ISDISP-VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLT---------PLANLTRITQLGLN 383 (466)
T ss_dssp C-CSCCGG-GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCG---------GGTTCTTCCEEECC
T ss_pred c-CCCchh-hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccc---------hhhcCCCCCEEecc
Confidence 5 454444 678999999999986 56655 235678999999999993 43332 25678999999998
Q ss_pred CCC
Q 047829 398 CLP 400 (407)
Q Consensus 398 ~cp 400 (407)
+|+
T Consensus 384 ~n~ 386 (466)
T 1o6v_A 384 DQA 386 (466)
T ss_dssp CEE
T ss_pred CCc
Confidence 874
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.4e-19 Score=175.60 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=146.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|+.|+++++ .++..+ ....+++|++|++++| .+..+| ++.+++|++|++.++. +.
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~---~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~--------------l~ 98 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMT---GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK--------------LT 98 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCT---TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC--------------CS
T ss_pred HcCCCCEEEccCC-CcccCh---hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC--------------Cc
Confidence 3788999999986 576664 2457899999999998 677775 7889999999996511 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+ .+..+++|++|+++++. ++..+. ..+++|+.|.+.+|.... + + ++.+++|++|++++|..+..+
T Consensus 99 ~~--~~~~l~~L~~L~L~~N~-l~~l~~------~~l~~L~~L~l~~N~l~~-l-~---l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 99 NL--DVTPLTKLTYLNCDTNK-LTKLDV------SQNPLLTYLNCARNTLTE-I-D---VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSC-CSCCCC------TTCTTCCEEECTTSCCSC-C-C---CTTCTTCCEEECTTCSCCCCC
T ss_pred ee--ecCCCCcCCEEECCCCc-CCeecC------CCCCcCCEEECCCCccce-e-c---cccCCcCCEEECCCCCccccc
Confidence 11 15667888888888875 444332 347788888888775443 2 2 467778888888877544433
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
. + . .+++|+.|+++++ .++.++ +..+++|+.|++.++ .++.+. ...+++|++|++++
T Consensus 165 ~-~----------~-~l~~L~~L~ls~n-~l~~l~-----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 165 D-V----------T-PQTQLTTLDCSFN-KITELD-----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSS 221 (457)
T ss_dssp C-C----------T-TCTTCCEEECCSS-CCCCCC-----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCS
T ss_pred c-c----------c-cCCcCCEEECCCC-ccceec-----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcC
Confidence 1 1 0 2466777777654 233331 334566666666553 344432 22356666666655
Q ss_pred ccccchhhhccccccccccccccCCcceEeccccccccccccccccccc----ccCCcCceeeccCcccccccccccccc
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNK----VFANLKSPEISECSKLQKLVPASWHLE 331 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~~~ 331 (407)
+..-. + + .+.+++|+.|+++++ .++.++...++.+. ...+|+.+++++|+.+..+| ...++
T Consensus 222 N~l~~-i----------p-~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 222 NKLTE-I----------D-VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp SCCSC-C----------C-CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred Ccccc-c----------C-ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccc
Confidence 53211 1 0 334555556655552 33333332222100 00133444444444444443 23445
Q ss_pred ccCEEEeccCcCccc
Q 047829 332 NLATLKVSKCHGLIN 346 (407)
Q Consensus 332 ~L~~L~l~~c~~l~~ 346 (407)
+|++|++++|+.+..
T Consensus 287 ~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 287 KIKELDVTHNTQLYL 301 (457)
T ss_dssp TCCCCCCTTCTTCCE
T ss_pred cCCEEECCCCcccce
Confidence 555555555544433
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=8.2e-19 Score=175.35 Aligned_cols=238 Identities=17% Similarity=0.135 Sum_probs=136.4
Q ss_pred ccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccc----------ccc-ccCCCCCcccEEe
Q 047829 131 FFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSA----------KEE-HIGPLFPSLSWLR 199 (407)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~L~~L~ 199 (407)
.+++|+.|.+.+|... .++.. +..+ +|+.|++++|.. ..++... ... ... .....+++|+.|+
T Consensus 280 ~l~~L~~L~l~~~~l~-~l~~~--~~~~-~L~~L~l~~n~~-~~l~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIE-RVKDF--SYNF-GWQHLELVNCKF-GQFPTLK-LKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp GGTTCSEEEEESCEEC-SCCBC--CSCC-CCSEEEEESCBC-SSCCBCB-CSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred CcCcccEEEecCccch-hhhhh--hccC-CccEEeeccCcc-cccCccc-ccccCEEeCcCCccccccccccCCCCCEEe
Confidence 3577888888876543 33332 4555 777777776642 2222100 000 000 0001235555555
Q ss_pred ccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccC
Q 047829 200 LIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFP 279 (407)
Q Consensus 200 l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~ 279 (407)
++++. +..+......+..+++|+.|++.+|. +...++. ...+++|++|+++++....... ......++
T Consensus 354 l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~l~ 421 (570)
T 2z63_A 354 LSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSNLKQMSE--------FSVFLSLR 421 (570)
T ss_dssp CCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSEEESCTT--------SCTTTTCT
T ss_pred CcCCc-cCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCccccccc--------hhhhhcCC
Confidence 55442 11110001123345666666666542 3333322 3346667777766654322111 11245678
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccc-cccccccccccccCEEEeccCcCcccccCchhhhcccc
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKL-QKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVN 358 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 358 (407)
+|+.|+++++. +.......+.. +++|+.|++++|... ..+|..+..+++|++|++++| .+....+. ....+++
T Consensus 422 ~L~~L~l~~n~-l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~ 495 (570)
T 2z63_A 422 NLIYLDISHTH-TRVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSS 495 (570)
T ss_dssp TCCEEECTTSC-CEECCTTTTTT---CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTT
T ss_pred CCCEEeCcCCc-ccccchhhhhc---CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChh-hhhcccC
Confidence 99999998853 44433343333 889999999988754 357777888999999999985 45555333 3457889
Q ss_pred CCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 359 LERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 359 L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
|+.|++++| .+..++ +..+..+++|++|+++++|
T Consensus 496 L~~L~l~~n-~l~~~~-------~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 496 LQVLNMASN-QLKSVP-------DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSS-CCSCCC-------TTTTTTCTTCCEEECCSSC
T ss_pred CCEEeCCCC-cCCCCC-------HHHhhcccCCcEEEecCCc
Confidence 999999988 444443 2345678899999998865
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=182.34 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=88.6
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.++|+.|+++++ .++...... ...+++|++|++++|.....+ |..+.++++|++|++.++ .+.
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N--------------~l~ 86 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS--------------KIY 86 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC--------------CCC
T ss_pred CCCcCEEECCCC-cCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC--------------cCc
Confidence 367888888885 466554433 457888888888888666666 566788888888888541 111
Q ss_pred H-HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 96 K-CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 96 ~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
. .|+.+..+++|++|+++++.-.........+ ..+++|+.|++++|.... +.+...++++++|+.|++++|.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF--RNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC--SSCSSCCEEEEESCCCCC-CCCCGGGGTCSSCCEEEEESSC
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccc--cccCCCCEEECCCCcccc-cccchhHhhCCCCCEEECCCCc
Confidence 1 2455677788888888887522222221112 347888888888876544 2333447788888888888763
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=6.9e-19 Score=175.17 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=81.6
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
+++|++|+++++ +++..+... ...+++|++|++++| .+..++ ..+..+++|++|++.++ .+.
T Consensus 25 ~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n--------------~l~ 87 (549)
T 2z81_A 25 TAAMKSLDLSFN-KITYIGHGD-LRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN--------------HLS 87 (549)
T ss_dssp CTTCCEEECCSS-CCCEECSST-TSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--------------CCC
T ss_pred CCCccEEECcCC-ccCccChhh-hhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC--------------ccC
Confidence 367888888885 466554432 457788888888888 555554 56777888888888541 111
Q ss_pred HHH-HhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 96 KCY-KEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 96 ~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
.++ ..+..+++|++|+++++. +........+ ..+++|+.|++.+|.....+++ ..+..+++|++|++++|.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLF--PNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALS 159 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSC--TTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT
T ss_pred ccCHHHhccCCCCcEEECCCCc-ccccchhhhh--hccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCc
Confidence 122 235667778888887775 3321111102 3467777777777765554432 235667777777777653
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=2.9e-19 Score=177.90 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=86.5
Q ss_pred cCCCccEEeEecCCCCccccC--cccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 218 ELPMFWSLTIENCPDMETFIS--NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
.+++|+.|+++++. +.+..+ ......+++|+.|++++|..- .+... ......+++|+.|+++++ .++.+
T Consensus 332 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~l 402 (549)
T 2z81_A 332 HLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKT------GEILLTLKNLTSLDISRN-TFHPM 402 (549)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHH------HHHGGGCTTCCEEECTTC-CCCCC
T ss_pred cCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCccc-ccccc------hhhhhcCCCCCEEECCCC-CCccC
Confidence 46788888888764 433221 111234788888888777532 11100 001344566666666663 44444
Q ss_pred cccccccccccCCcCceeeccCccccccccc------------------cccccccCEEEeccCcCcccccCchhhhccc
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVPA------------------SWHLENLATLKVSKCHGLINLLTLSTSESLV 357 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~------------------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 357 (407)
|.. ...+++|++|+++++. ++.+|.. ...+++|++|+++++ .+..++. ...++
T Consensus 403 p~~----~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~ 473 (549)
T 2z81_A 403 PDS----CQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD---ASLFP 473 (549)
T ss_dssp CSC----CCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC---GGGCT
T ss_pred Chh----hcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC---cccCc
Confidence 432 1124555555555543 2222211 135677777777774 5555532 23567
Q ss_pred cCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 358 NLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 358 ~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
+|+.|++++| .+..++ +..+..+++|+.|+++++|
T Consensus 474 ~L~~L~Ls~N-~l~~~~-------~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 474 VLLVMKISRN-QLKSVP-------DGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TCCEEECCSS-CCCCCC-------TTGGGGCTTCCEEECCSSC
T ss_pred cCCEEecCCC-ccCCcC-------HHHHhcCcccCEEEecCCC
Confidence 7888887777 443332 3445677888888888876
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.4e-18 Score=168.88 Aligned_cols=315 Identities=11% Similarity=-0.003 Sum_probs=197.0
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|++|+++++.-....+... ...+++|++|++++|......|..+..+++|++|++.++ .
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------------~ 114 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC--------------N 114 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTT-TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS--------------C
T ss_pred hccCccccEEECcCCcccceECccc-ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC--------------C
Confidence 3457899999999975333443332 457899999999999433345778899999999999541 1
Q ss_pred HH-HHHHh--hcCCCCccEEEeccCCCccee-ccCCCCCccccCCceEEEEecCCCCCcCCccchhhcc--ccCCeeEEc
Q 047829 94 IQ-KCYKE--MIGFRDIWYLQLSYFPRLKEI-WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCL--NNLGWLEVR 167 (407)
Q Consensus 94 ~~-~l~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~ 167 (407)
+. ..+.. +..+++|++|+++++. +... +... + ..+++|+.|++++|......+ ..+..+ ++|+.++++
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~--~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASF-F--LNMRRFHVLDLTFNKVKSICE--EDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGG-G--GGCTTCCEEECTTCCBSCCCT--TTSGGGTTCEEEEEECT
T ss_pred CCccccCcccccCcccCCEEECCCCc-cCccCcccc-c--CCCCcccEEeCCCCcccccCh--hhhhccccccccccccc
Confidence 11 13333 6788999999999887 3322 1110 1 347899999999887654322 123333 456666666
Q ss_pred cccccceeeccCCccccccccCCCCCcccEEeccccc---------------------------cccccccC-------C
Q 047829 168 NCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLP---------------------------KLKRFCNF-------T 213 (407)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------------~l~~i~~~-------~ 213 (407)
++. +..+.............. .+++|+.|+++++. ........ .
T Consensus 189 ~n~-l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 189 SIT-LQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp TCB-CTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cCc-ccccchhhcccccccccc-ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 543 222111100000000000 12455555555442 11100000 0
Q ss_pred Ccc--ccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccc
Q 047829 214 GNI--IELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHK 291 (407)
Q Consensus 214 ~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 291 (407)
..+ ...++|+.|++.++ .+....+.. ...+++|++|+++++....... ..+..+++|+.|+++++ .
T Consensus 267 ~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~Ls~N-~ 334 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKS-KIFALLKSV-FSHFTDLEQLTLAQNEINKIDD---------NAFWGLTHLLKLNLSQN-F 334 (455)
T ss_dssp TTTGGGTTSCCCEEECCSS-CCCEECTTT-TTTCTTCCEEECTTSCCCEECT---------TTTTTCTTCCEEECCSS-C
T ss_pred cccccccccCceEEEecCc-cccccchhh-cccCCCCCEEECCCCcccccCh---------hHhcCcccCCEEECCCC-c
Confidence 001 12368999999885 466665544 3458999999998886432211 12567899999999995 5
Q ss_pred cccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 292 VQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 292 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++.++...+.. +++|+.|+++++......|..+..+++|++|++++ +.+..+++ .....+++|+.|++++++
T Consensus 335 l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 335 LGSIDSRMFEN---LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEECGGGGTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cCCcChhHhcC---cccCCEEECCCCcccccChhhccccccccEEECCC-CccccCCH-hHhccCCcccEEEccCCC
Confidence 66666555544 89999999999865444466788899999999998 56777643 445678999999998753
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2e-18 Score=180.31 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=89.2
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCcccc-ccccccCCCCcceeEEEeecccccccccCcchh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKT-FSQGILSTPKLHKVQVIVKEEGELYHREGNLNS 92 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (407)
...+++|++|+++++.....++... ...+++|++|++++| .+.. .|..+..+++|++|++.++.-. .
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~-------~--- 111 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLS-------D--- 111 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCS-------S---
T ss_pred CcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCC-------c---
Confidence 3457899999999986665554433 567899999999999 4554 4778899999999999542110 0
Q ss_pred hHHHHHHh--hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhcc--ccCCeeEEcc
Q 047829 93 TIQKCYKE--MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCL--NNLGWLEVRN 168 (407)
Q Consensus 93 ~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~ 168 (407)
..+.. +..+++|++|+++++. +........| ..+++|+.|++++|...... + ..+..+ ++|+.|++++
T Consensus 112 ---~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~--~~L~~L~~L~Ls~N~i~~~~-~-~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 112 ---AVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSF--GKLNSLKSIDFSSNQIFLVC-E-HELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp ---CCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGG--GTCSSCCEEEEESSCCCCCC-S-GGGHHHHHCSSCCCEECC
T ss_pred ---ccccCccccccCCCCEEECCCCc-ccccccchhH--hhCCCCCEEECCCCcCCeeC-H-HHcccccCCccceEECCC
Confidence 01222 5677889999999876 3322111112 34788999999887654322 2 224444 6677777766
Q ss_pred cc
Q 047829 169 CD 170 (407)
Q Consensus 169 ~~ 170 (407)
|.
T Consensus 184 n~ 185 (844)
T 3j0a_A 184 NS 185 (844)
T ss_dssp SB
T ss_pred Cc
Confidence 53
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=2.9e-18 Score=163.29 Aligned_cols=282 Identities=12% Similarity=0.078 Sum_probs=204.4
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTI 94 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (407)
.+++|++|+++++ .++..+... ...+++|++|+++++ .+..+| ..+..+++|++|++.+ +.+
T Consensus 67 ~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~--------------n~l 129 (390)
T 3o6n_A 67 SFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER--------------NDL 129 (390)
T ss_dssp HCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--------------SCC
T ss_pred ccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCC--------------Ccc
Confidence 4689999999996 476665543 457899999999999 566665 4578899999999965 122
Q ss_pred HHHHHh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 95 QKCYKE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 95 ~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
..+|.. +..+++|++|+++++. +....... + ..+++|+.|.+.+|.... + + +..+++|+.++++++. +.
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~l~~n~l~~-~-~---~~~l~~L~~L~l~~n~-l~ 199 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQLSSNRLTH-V-D---LSLIPSLFHANVSYNL-LS 199 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--SSCTTCCEEECCSSCCSB-C-C---GGGCTTCSEEECCSSC-CS
T ss_pred CcCCHHHhcCCCCCcEEECCCCc-cCccChhh-c--cCCCCCCEEECCCCcCCc-c-c---cccccccceeeccccc-cc
Confidence 234444 3678999999999986 44332222 2 347999999999986543 2 2 5778999999999863 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
.+. ..++|+.|++.++. +..++. ..+++|+.|++.++ .++..+ ....+++|++|++
T Consensus 200 ~~~--------------~~~~L~~L~l~~n~-l~~~~~-----~~~~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~L 255 (390)
T 3o6n_A 200 TLA--------------IPIAVEELDASHNS-INVVRG-----PVNVELTILKLQHN-NLTDTA---WLLNYPGLVEVDL 255 (390)
T ss_dssp EEE--------------CCSSCSEEECCSSC-CCEEEC-----CCCSSCCEEECCSS-CCCCCG---GGGGCTTCSEEEC
T ss_pred ccC--------------CCCcceEEECCCCe-eeeccc-----cccccccEEECCCC-CCcccH---HHcCCCCccEEEC
Confidence 332 23689999998763 444322 23578999999886 455442 3456899999999
Q ss_pred ccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccccc
Q 047829 254 QKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL 333 (407)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 333 (407)
+++....... ..+..+++|+.|++++ ..++.++... ..+++|+.|+++++ .+..+|+.+..+++|
T Consensus 256 s~n~l~~~~~---------~~~~~l~~L~~L~L~~-n~l~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 256 SYNELEKIMY---------HPFVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRL 320 (390)
T ss_dssp CSSCCCEEES---------GGGTTCSSCCEEECCS-SCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTC
T ss_pred CCCcCCCcCh---------hHccccccCCEEECCC-CcCcccCccc----CCCCCCCEEECCCC-cceecCccccccCcC
Confidence 9886432111 1256789999999999 4566666542 23889999999998 467788888889999
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++|+++++ .+..++ ...+++|+.|++++++
T Consensus 321 ~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 321 ENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 99999985 466552 3467899999998864
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.9e-18 Score=172.59 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=93.1
Q ss_pred cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccc-cc
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQH-LW 296 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-l~ 296 (407)
.+++|+.|+++++ .+++..+.. ...+++|+.|+++++..- .+.. .......+++|+.|+++++. ++. ++
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~~~~------~~~~~~~l~~L~~L~l~~N~-l~~~~~ 420 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVFQG-CSTLKRLQTLILQRNGLK-NFFK------VALMTKNMSSLETLDVSLNS-LNSHAY 420 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTT-CCSCSSCCEEECCSSCCC-BTTH------HHHTTTTCTTCCEEECTTSC-CBSCCS
T ss_pred CCCCceEEECCCC-ccccchhhh-hcccCCCCEEECCCCCcC-Cccc------chhhhcCCCCCCEEECCCCc-CCCccC
Confidence 4556666666654 344433322 234666677766665322 1100 00114567788888888743 443 66
Q ss_pred ccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhcc
Q 047829 297 KENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQS 376 (407)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 376 (407)
...+.. +++|+.|+++++.-...+|..+. ++|++|+++++ .+..++ ..+. .+++|+.|+++++ .+..++
T Consensus 421 ~~~~~~---l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip-~~~~-~l~~L~~L~L~~N-~l~~l~-- 489 (562)
T 3a79_B 421 DRTCAW---AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIP-KDVT-HLQALQELNVASN-QLKSVP-- 489 (562)
T ss_dssp SCCCCC---CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCC-TTTT-SSCCCSEEECCSS-CCCCCC--
T ss_pred hhhhcC---cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccC-hhhc-CCCCCCEEECCCC-CCCCCC--
Confidence 554443 67888888887764344443322 68888888874 666653 3333 7888888888887 455554
Q ss_pred ccCCcccceeEecccceEecCCCC
Q 047829 377 QVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 377 ~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
...+..+++|++|+++++|
T Consensus 490 -----~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 490 -----DGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -----TTSTTTCTTCCCEECCSCC
T ss_pred -----HHHHhcCCCCCEEEecCCC
Confidence 1125567888888888876
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=176.64 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=63.1
Q ss_pred ccccCCcceEecccccccccc-cccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHL-WKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+++|+.|+++++. +... +...+. .+++|+.|++++|......|..+..+++|++|++++|.......+ ...
T Consensus 392 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~ 466 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSN-LKQMSEFSVFL---SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIF 466 (570)
T ss_dssp EETCTTCCEEECTTSE-EESCTTSCTTT---TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCC
T ss_pred ccccCCCCEEEccCCc-cccccchhhhh---cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhh
Confidence 3445666666666532 2222 212222 266777777777654444555566677777777777542211112 234
Q ss_pred hccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 354 ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
..+++|+.|++++| .+..+ .+..+..+++|++|++++|
T Consensus 467 ~~l~~L~~L~l~~n-~l~~~-------~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 467 TELRNLTFLDLSQC-QLEQL-------SPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTCTTCCEEECTTS-CCCEE-------CTTTTTTCTTCCEEECCSS
T ss_pred hcccCCCEEECCCC-ccccC-------ChhhhhcccCCCEEeCCCC
Confidence 45677777777777 33333 1244556788888887765
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=170.51 Aligned_cols=130 Identities=13% Similarity=0.086 Sum_probs=76.0
Q ss_pred ccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccc--cccccccccCCcCceeeccCcccc
Q 047829 244 LHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWK--ENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 244 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
.+++|++|+++++......+ ...+.+++|+.|+++++ .++.++. ..+ ..+++|+.|+++++....
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~---~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVF---------ENCGHLTELETLILQMN-QLKELSKIAEMT---TQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTT---------TTCCCCSSCCEEECCSS-CCCBHHHHHHHH---TTCTTCCEEECCSSCCBC
T ss_pred hCCcccEEEeECCccChhhh---------hhhccCCCCCEEEccCC-ccCccccchHHH---hhCCCCCEEECCCCcCCc
Confidence 35666666666654322111 12456777888888774 3443221 112 236778888888765433
Q ss_pred ccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 322 KLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 322 ~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
.+|.. +..+++|++|++++|. +....+..+ .++|+.|++++| .+..++ ..+..+++|++|+++++
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l---~~~L~~L~Ls~N-~l~~ip--------~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCL---PPRIKVLDLHSN-KIKSIP--------KQVVKLEALQELNVASN 454 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSC-CCGGGGGSC---CTTCCEEECCSS-CCCCCC--------GGGGGCTTCCEEECCSS
T ss_pred ccccchhccCccCCEEECcCCC-CCcchhhhh---cccCCEEECCCC-cccccc--------hhhhcCCCCCEEECCCC
Confidence 36643 5567788888887753 332212111 157888888887 455544 34447888999988775
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=3.9e-18 Score=174.14 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=92.6
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCc--cccCcccccccCCCceeecccccccchhhhcccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDME--TFISNSTSILHMTADNKEPQKLKSEENLLVADQIQH 270 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 270 (407)
++|++|+++++. +..+. ...+..+++|+.|++.++. +. +..+.. ...+++|+.|+++++..- .+.+
T Consensus 430 ~~L~~L~Ls~n~-l~~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~-~i~~------ 497 (680)
T 1ziw_A 430 ENIFEIYLSYNK-YLQLT--RNSFALVPSLQRLMLRRVA-LKNVDSSPSP-FQPLRNLTILDLSNNNIA-NIND------ 497 (680)
T ss_dssp TTCCEEECCSCS-EEECC--TTTTTTCTTCCEEECTTSC-CBCTTCSSCT-TTTCTTCCEEECCSSCCC-CCCT------
T ss_pred ccccEEecCCCC-cceeC--hhhhhcCcccccchhcccc-ccccccCCcc-cccCCCCCEEECCCCCCC-cCCh------
Confidence 555555555543 21111 1123345556666655532 11 111211 233566666666555321 1111
Q ss_pred ccccccccCCcceEecccccccccccccccc-----cccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCc
Q 047829 271 LFDEKVTFPQLRFLELSRLHKVQHLWKENAE-----SNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGL 344 (407)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~-----~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l 344 (407)
.....+++|+.|+++++ .++.++...++ .+..+++|+.|+++++ .+..+|. .+..+++|++|++++ +.+
T Consensus 498 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l 572 (680)
T 1ziw_A 498 --DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNL 572 (680)
T ss_dssp --TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCC
T ss_pred --hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCC
Confidence 11445667777777763 34444322211 1223667777777765 3455554 356677777777766 456
Q ss_pred ccccCchhhhccccCCEEEEecccchhhhhccccCCccccee-EecccceEecCCCC
Q 047829 345 INLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCI-VFRKLEYLGLDCLP 400 (407)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~-~~~~L~~L~l~~cp 400 (407)
..++ ......+++|+.|+++++ .+..++ +..+. .+++|++++++++|
T Consensus 573 ~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~-------~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 573 NTLP-ASVFNNQVSLKSLNLQKN-LITSVE-------KKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCCC-TTTTTTCTTCCEEECTTS-CCCBCC-------HHHHHHHHTTCSEEECTTCC
T ss_pred CcCC-HhHhCCCCCCCEEECCCC-cCCccC-------hhHhcccccccCEEEccCCC
Confidence 6553 334456677777777776 333332 11222 46677777777655
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=1.5e-18 Score=168.48 Aligned_cols=256 Identities=15% Similarity=0.125 Sum_probs=183.0
Q ss_pred ccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc
Q 047829 40 TLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK 119 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 119 (407)
...+++|++|+++++ .+..+| .+..+++|++|++.++. +..+ .+..+++|++|+++++. +.
T Consensus 38 ~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~--------------l~~~--~~~~l~~L~~L~Ls~N~-l~ 98 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN--------------ITTL--DLSQNTNLTYLACDSNK-LT 98 (457)
T ss_dssp HHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC--------------CSCC--CCTTCTTCSEEECCSSC-CS
T ss_pred hhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc--------------CCeE--ccccCCCCCEEECcCCC-Cc
Confidence 346899999999999 788887 78999999999996521 1112 25678999999999987 55
Q ss_pred eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEe
Q 047829 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLR 199 (407)
Q Consensus 120 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 199 (407)
..+ + ..+++|+.|++++|.... + + ++.+++|++|++++|. ++.+. + ..+++|+.|+
T Consensus 99 ~~~----~--~~l~~L~~L~L~~N~l~~-l-~---~~~l~~L~~L~l~~N~-l~~l~-----------l-~~l~~L~~L~ 154 (457)
T 3bz5_A 99 NLD----V--TPLTKLTYLNCDTNKLTK-L-D---VSQNPLLTYLNCARNT-LTEID-----------V-SHNTQLTELD 154 (457)
T ss_dssp CCC----C--TTCTTCCEEECCSSCCSC-C-C---CTTCTTCCEEECTTSC-CSCCC-----------C-TTCTTCCEEE
T ss_pred eee----c--CCCCcCCEEECCCCcCCe-e-c---CCCCCcCCEEECCCCc-cceec-----------c-ccCCcCCEEE
Confidence 433 2 458999999999986543 3 2 6889999999999874 33321 1 1358999999
Q ss_pred ccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccC
Q 047829 200 LIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFP 279 (407)
Q Consensus 200 l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~ 279 (407)
+.++..+..+ .+..+++|+.|+++++ ++++++ ...+++|+.|+++++..-. + ..+.++
T Consensus 155 l~~n~~~~~~-----~~~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N~l~~-~-----------~l~~l~ 212 (457)
T 3bz5_A 155 CHLNKKITKL-----DVTPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTNNITK-L-----------DLNQNI 212 (457)
T ss_dssp CTTCSCCCCC-----CCTTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSSCCSC-C-----------CCTTCT
T ss_pred CCCCCccccc-----ccccCCcCCEEECCCC-ccceec----cccCCCCCEEECcCCcCCe-e-----------ccccCC
Confidence 9998766654 2456899999999886 576664 2358999999998875322 1 256789
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEE----------EeccCcCcccccC
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATL----------KVSKCHGLINLLT 349 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L----------~l~~c~~l~~~~~ 349 (407)
+|+.|+++++ .++.++ + ..+++|+.|+++++. ++.+| ...+++|+.| ++++|..+..++
T Consensus 213 ~L~~L~Ls~N-~l~~ip---~---~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 213 QLTFLDCSSN-KLTEID---V---TPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp TCSEEECCSS-CCSCCC---C---TTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-
T ss_pred CCCEEECcCC-cccccC---c---cccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-
Confidence 9999999994 566665 2 238899999999874 55554 3455555555 455444333332
Q ss_pred chhhhccccCCEEEEecccchhhhh
Q 047829 350 LSTSESLVNLERMKITDCKMMEEII 374 (407)
Q Consensus 350 ~~~~~~l~~L~~L~i~~c~~l~~~~ 374 (407)
...+++|+.|++++|..+..++
T Consensus 282 ---~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 282 ---AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ---CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ---ccccccCCEEECCCCcccceec
Confidence 2356888999998887655554
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=3.1e-18 Score=174.87 Aligned_cols=106 Identities=13% Similarity=-0.002 Sum_probs=54.4
Q ss_pred ccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccc-----ccc
Q 047829 222 FWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQ-----HLW 296 (407)
Q Consensus 222 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-----~l~ 296 (407)
|+.|+++++ .++..++.. ...+++|++|+++++...... ...+..+++|+.|+++++..-. .++
T Consensus 250 L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~---------~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 250 LTMLDLSYN-NLNVVGNDS-FAWLPQLEYFFLEYNNIQHLF---------SHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp CCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSCCBSEEC---------TTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred CCEEECCCC-CcCccCccc-ccCcccccEeeCCCCccCccC---------hhhhcCCCCccEEeccchhhhccccccccc
Confidence 666666554 244443332 233566666666555322111 1124456677777776532111 111
Q ss_pred ---ccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 297 ---KENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 297 ---~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
...+ ..+++|+.|+++++.-....+..+..+++|++|++++|
T Consensus 319 ~i~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 319 KIDDFSF---QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp EECTTTT---TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccChhhc---ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 1122 23677888888776533333344566777888877765
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=2.5e-17 Score=153.22 Aligned_cols=291 Identities=12% Similarity=0.051 Sum_probs=141.8
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCccccccc-cccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQ-GILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
+++.+++++. .++.+|... .+.|++|+++++ .+..++. .+..+++|++|++.++. +..+
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~ 91 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK--------------ISKI 91 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC--------------CCCB
T ss_pred CCeEEEecCC-CccccCccC----CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc--------------CCee
Confidence 4555555553 344444331 256666666666 4555543 45566666666664310 1111
Q ss_pred -HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 98 -YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 98 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
|..+..+++|++|+++++. ++. ++...+++|+.|.+.+|.... + +...+.++++|+.|++++|.....
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~-l~~------l~~~~~~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~l~~n~l~~~-- 160 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQ-LKE------LPEKMPKTLQELRVHENEITK-V-RKSVFNGLNQMIVVELGTNPLKSS-- 160 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSB------CCSSCCTTCCEEECCSSCCCB-B-CHHHHTTCTTCCEEECCSSCCCGG--
T ss_pred CHHHhcCCCCCCEEECCCCc-CCc------cChhhcccccEEECCCCcccc-c-CHhHhcCCccccEEECCCCcCCcc--
Confidence 3334455666666666554 322 121223556666666554332 2 223345556666666655431100
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKL 256 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 256 (407)
......+..+++|+.|++.++ .++.++... .++|++|+++++
T Consensus 161 ---------------------------------~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~----~~~L~~L~l~~n 202 (330)
T 1xku_A 161 ---------------------------------GIENGAFQGMKKLSYIRIADT-NITTIPQGL----PPSLTELHLDGN 202 (330)
T ss_dssp ---------------------------------GBCTTGGGGCTTCCEEECCSS-CCCSCCSSC----CTTCSEEECTTS
T ss_pred ---------------------------------CcChhhccCCCCcCEEECCCC-ccccCCccc----cccCCEEECCCC
Confidence 000111233444444444443 233332211 245555555554
Q ss_pred cccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEE
Q 047829 257 KSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATL 336 (407)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L 336 (407)
.... +. ...+..+++|+.|+++++ .++.++...+.. +++|+.|+++++ .+..+|.++..+++|++|
T Consensus 203 ~l~~-~~--------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 203 KITK-VD--------AASLKGLNNLAKLGLSFN-SISAVDNGSLAN---TPHLRELHLNNN-KLVKVPGGLADHKYIQVV 268 (330)
T ss_dssp CCCE-EC--------TGGGTTCTTCCEEECCSS-CCCEECTTTGGG---STTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred cCCc-cC--------HHHhcCCCCCCEEECCCC-cCceeChhhccC---CCCCCEEECCCC-cCccCChhhccCCCcCEE
Confidence 3211 10 011344566777777663 444554443333 677777777776 355677777777888888
Q ss_pred EeccCcCcccccCchhh-----hccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 337 KVSKCHGLINLLTLSTS-----ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 337 ~l~~c~~l~~~~~~~~~-----~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
++++ +.+..++...+. ...+.++.+++.+++..... ..+.....++.++.++++++
T Consensus 269 ~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~------i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE------IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG------SCGGGGTTCCCGGGEEC---
T ss_pred ECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc------cCccccccccceeEEEeccc
Confidence 8877 345555332221 12356777777776421111 01233445666777776653
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=2.7e-17 Score=165.33 Aligned_cols=281 Identities=12% Similarity=0.078 Sum_probs=202.9
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCcccccccc-ccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQG-ILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
+++|++|+++++ .+...+... ...+++|++|++++| .+..+|.. ++.+++|++|++.++ .+.
T Consensus 74 l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~ 136 (597)
T 3oja_B 74 FRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN--------------DLS 136 (597)
T ss_dssp CCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--------------CCC
T ss_pred CCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC--------------CCC
Confidence 689999999996 477665543 457899999999999 57666654 588999999999651 222
Q ss_pred HHHHh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 96 KCYKE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 96 ~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
.+|.. +..+++|++|+++++. +....... + ..+++|+.|.+++|.... + + +..+++|+.|++++|. +..
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~--~~l~~L~~L~L~~N~l~~-~-~---~~~l~~L~~L~l~~n~-l~~ 206 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQLSSNRLTH-V-D---LSLIPSLFHANVSYNL-LST 206 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEECTTSCCSB-C-C---GGGCTTCSEEECCSSC-CSE
T ss_pred CCCHHHhccCCCCCEEEeeCCc-CCCCChhh-h--hcCCcCcEEECcCCCCCC-c-C---hhhhhhhhhhhcccCc-ccc
Confidence 34444 4678999999999986 44433222 2 347999999999986543 2 2 4778999999999863 333
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
+. ..++|+.|+++++. +..++.. .+++|+.|++.++ .+++. .....+++|+.|+++
T Consensus 207 l~--------------~~~~L~~L~ls~n~-l~~~~~~-----~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 207 LA--------------IPIAVEELDASHNS-INVVRGP-----VNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLS 262 (597)
T ss_dssp EE--------------CCTTCSEEECCSSC-CCEEECS-----CCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECC
T ss_pred cc--------------CCchhheeeccCCc-ccccccc-----cCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECC
Confidence 22 23689999998764 4443322 2478999999886 45543 234568999999998
Q ss_pred cccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccC
Q 047829 255 KLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLA 334 (407)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 334 (407)
++......+ ..++.+++|+.|++++ +.++.++... ..+++|+.|++++|. +..+|..+..+++|+
T Consensus 263 ~N~l~~~~~---------~~~~~l~~L~~L~Ls~-N~l~~l~~~~----~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 263 YNELEKIMY---------HPFVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 327 (597)
T ss_dssp SSCCCEEES---------GGGTTCSSCCEEECTT-SCCCEEECSS----SCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred CCccCCCCH---------HHhcCccCCCEEECCC-CCCCCCCccc----ccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence 876432211 1266789999999998 4566666542 237899999999875 567888888899999
Q ss_pred EEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 335 TLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 335 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+|++++| .+..++ ...+++|+.|++++++
T Consensus 328 ~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred EEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 9999985 455542 3457899999998864
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.6e-17 Score=153.25 Aligned_cols=113 Identities=8% Similarity=0.088 Sum_probs=65.3
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
+..+++|+.|++++ ..++.++...+.. +++|+.|+++++ .+..+|.++..+++|++|++++ +.+..+++..+..
T Consensus 213 l~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 213 LLRYSKLYRLGLGH-NQIRMIENGSLSF---LPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCP 286 (332)
T ss_dssp STTCTTCSCCBCCS-SCCCCCCTTGGGG---CTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSC
T ss_pred hcCCCCCCEEECCC-CcCCcCChhHhhC---CCCCCEEECCCC-cCeecChhhhcCccCCEEECCC-CCCCccChhHccc
Confidence 44566777777776 3455555444433 677888888776 3557777777778888888877 4555553332221
Q ss_pred c-----cccCCEEEEecccchh-hhhccccCCcccceeEecccceEecCCCC
Q 047829 355 S-----LVNLERMKITDCKMME-EIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 355 ~-----l~~L~~L~i~~c~~l~-~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
. .+.|+.+++.+++... .+ .+.....+++|+.++++++.
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~-------~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEV-------QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGS-------CGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCccccccc-------Ccccccccchhhhhhccccc
Confidence 1 3567778887775321 11 12334556777777777653
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=1.7e-17 Score=154.10 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=69.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+++++.|+++++ +++.+|.. ...+++|++|+++++ .+..+|..++.+++|++|++.++ .+..
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~--l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n--------------~l~~ 141 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQ--AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN--------------PLRA 141 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSC--GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC--------------CCCC
T ss_pred ccceeEEEccCC-CchhcChh--hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC--------------cccc
Confidence 356666666663 45555443 334666777777766 45566666666667777766531 1112
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCC---CC--ccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQA---LP--VSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+|..+..+++|++|++++|......+.... +. -..+++|+.|++.+|... .++.. +..+++|++|++++|
T Consensus 142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~--l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS--IANLQNLKSLKIRNS 216 (328)
T ss_dssp CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG--GGGCTTCCEEEEESS
T ss_pred CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh--hcCCCCCCEEEccCC
Confidence 444455566666666666554433222110 00 012555666666655433 33322 555566666666554
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=3.6e-17 Score=151.94 Aligned_cols=230 Identities=19% Similarity=0.179 Sum_probs=112.1
Q ss_pred cCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceec
Q 047829 43 FPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIW 122 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 122 (407)
.+.++.|+++++ .+..+|..++++++|++|++.++ .+..+|..+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n--------------~l~~lp~~~--------------------- 123 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA--------------GLMELPDTM--------------------- 123 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS--------------CCCCCCSCG---------------------
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCC--------------CccchhHHH---------------------
Confidence 478888888887 67788887888888888888541 111122222
Q ss_pred cCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc
Q 047829 123 HGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID 202 (407)
Q Consensus 123 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (407)
..+++|+.|++++|... .++.. +.++++|++|++++|+.+..++.........+.+. .+++|+.|++++
T Consensus 124 -------~~l~~L~~L~Ls~n~l~-~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~-~l~~L~~L~L~~ 192 (328)
T 4fcg_A 124 -------QQFAGLETLTLARNPLR-ALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQ-GLVNLQSLRLEW 192 (328)
T ss_dssp -------GGGTTCSEEEEESCCCC-CCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE-ESTTCCEEEEEE
T ss_pred -------hccCCCCEEECCCCccc-cCcHH--HhcCcCCCEEECCCCCCccccChhHhhccchhhhc-cCCCCCEEECcC
Confidence 23566666666665443 33322 56667777777776654444332110000000000 124444444444
Q ss_pred cccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcc
Q 047829 203 LPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLR 282 (407)
Q Consensus 203 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~ 282 (407)
+ .+..++. .+..+++|+.|+++++ .++++++ . +..+++|+
T Consensus 193 n-~l~~lp~---~l~~l~~L~~L~L~~N-~l~~l~~-~----------------------------------l~~l~~L~ 232 (328)
T 4fcg_A 193 T-GIRSLPA---SIANLQNLKSLKIRNS-PLSALGP-A----------------------------------IHHLPKLE 232 (328)
T ss_dssp E-CCCCCCG---GGGGCTTCCEEEEESS-CCCCCCG-G----------------------------------GGGCTTCC
T ss_pred C-CcCcchH---hhcCCCCCCEEEccCC-CCCcCch-h----------------------------------hccCCCCC
Confidence 3 2222211 1233445555555443 2333222 1 33344555
Q ss_pred eEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEE
Q 047829 283 FLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERM 362 (407)
Q Consensus 283 ~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 362 (407)
.|+++++...+.++.. +..+++|+.|++++|.....+|..+..+++|++|++++|+.+..++ .....+++|+.+
T Consensus 233 ~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l 306 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCII 306 (328)
T ss_dssp EEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEE
T ss_pred EEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEE
Confidence 5555544444333332 1124555555555555555555555555555555555555544442 123445555555
Q ss_pred EEe
Q 047829 363 KIT 365 (407)
Q Consensus 363 ~i~ 365 (407)
.+.
T Consensus 307 ~l~ 309 (328)
T 4fcg_A 307 LVP 309 (328)
T ss_dssp ECC
T ss_pred eCC
Confidence 544
No 40
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=4e-19 Score=178.52 Aligned_cols=217 Identities=12% Similarity=-0.020 Sum_probs=116.7
Q ss_pred hhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEec-----
Q 047829 155 LRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIEN----- 229 (407)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~----- 229 (407)
+..+++|++|++++|. +..... .. +...+++|++|++.++..-..+ ......+++|++|++.+
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~-------~~-~~~~~~~L~~L~L~~~~~~~~l---~~~~~~~~~L~~L~L~~g~~~~ 356 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDH-------CT-LIQKCPNLEVLETRNVIGDRGL---EVLAQYCKQLKRLRIERGADEQ 356 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHH-------HH-HHTTCTTCCEEEEEGGGHHHHH---HHHHHHCTTCCEEEEECCCCSS
T ss_pred HhhcCCCcEEecCCCc-CCHHHH-------HH-HHHhCcCCCEEeccCccCHHHH---HHHHHhCCCCCEEEeecCcccc
Confidence 5566777777777765 221110 00 0012467777777632111110 00123467788888885
Q ss_pred -----CCCCccccCcccccccCCCceeecccccccchhhhccccccccccccc-cCCcceEeccc---cccccccccc-c
Q 047829 230 -----CPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVT-FPQLRFLELSR---LHKVQHLWKE-N 299 (407)
Q Consensus 230 -----c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~---~~~l~~l~~~-~ 299 (407)
|+.++......+...+++|++|.+ .|..+++.. ....+. +++|+.|+++. ++.++..|.+ +
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~--------~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 357 GMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNES--------LESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp TTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHH--------HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred ccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHH--------HHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 777665544444556788888888 444443311 111333 77888888873 4455544321 1
Q ss_pred cc-cccccCCcCceeeccCcc-ccc-ccccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhc
Q 047829 300 AE-SNKVFANLKSPEISECSK-LQK-LVPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQ 375 (407)
Q Consensus 300 ~~-~~~~~~~L~~L~l~~c~~-l~~-l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 375 (407)
+. ....+++|+.|+++.|.. +.. .+..+ ..+++|++|++++|. +.+.....+...+++|+.|++++|+ +....
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~- 504 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERA- 504 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHH-
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHH-
Confidence 11 022377888888876553 221 11112 346788888888654 4433223345567888888888886 32211
Q ss_pred cccCCcccceeEecccceEecCCCC
Q 047829 376 SQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 376 ~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
.+.....+++|++|++++|+
T Consensus 505 -----~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 505 -----IAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -----HHHHHHHCSSCCEEEEESCB
T ss_pred -----HHHHHHhcCccCeeECcCCc
Confidence 00122456788888888776
No 41
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=6.4e-19 Score=177.06 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=65.0
Q ss_pred ccCCcceEecc-----ccccccccccc-cccc-ccccCCcCceeeccCccccc-cccccc-cccccCEEEeccCcCcccc
Q 047829 277 TFPQLRFLELS-----RLHKVQHLWKE-NAES-NKVFANLKSPEISECSKLQK-LVPASW-HLENLATLKVSKCHGLINL 347 (407)
Q Consensus 277 ~l~~L~~L~L~-----~~~~l~~l~~~-~~~~-~~~~~~L~~L~l~~c~~l~~-l~~~~~-~~~~L~~L~l~~c~~l~~~ 347 (407)
.+++|+.|+++ +|..++..+.. ++.. ...+++|+.|++.+ .+.. .+..+. .+++|++|++++|. +.+.
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~ 471 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL 471 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH
Confidence 36788888887 45555543321 1110 12367788888865 3332 111222 36788888887764 4433
Q ss_pred cCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCC
Q 047829 348 LTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS 401 (407)
Q Consensus 348 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~ 401 (407)
....+...+++|+.|++++|+.-.... ......+++|++|++++|+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~-------~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPFGDKAL-------LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCHHHH-------HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCCcHHHH-------HHHHHhCCCCCEEeeeCCCC
Confidence 233334567888888888885421111 01223567888888888864
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=2.7e-17 Score=164.16 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=82.1
Q ss_pred ccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccc--cccccccccCCcCceeeccCcccc
Q 047829 244 LHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWK--ENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 244 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
.+++|++|+++++......+ ...+.+++|+.|+++++ .++.++. ..+. .+++|+.|+++++....
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~---~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVF---------QGCSTLKRLQTLILQRN-GLKNFFKVALMTK---NMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTT---------TTCCSCSSCCEEECCSS-CCCBTTHHHHTTT---TCTTCCEEECTTSCCBS
T ss_pred CCCCceEEECCCCccccchh---------hhhcccCCCCEEECCCC-CcCCcccchhhhc---CCCCCCEEECCCCcCCC
Confidence 46677777776665332211 12566788888888883 5554432 1222 37888888888876443
Q ss_pred ccccc-cccccccCEEEeccCcCcccccCchhhhcc-ccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 322 KLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESL-VNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 322 ~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
.+|.. +..+++|++|+++++. +.... +..+ ++|+.|++++| .+..++ ..+..+++|++|+++++
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~~L~~L~L~~N-~l~~ip--------~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNM-LTGSV----FRCLPPKVKVLDLHNN-RIMSIP--------KDVTHLQALQELNVASN 483 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSC-CCGGG----GSSCCTTCSEEECCSS-CCCCCC--------TTTTSSCCCSEEECCSS
T ss_pred ccChhhhcCcccCCEEECCCCC-CCcch----hhhhcCcCCEEECCCC-cCcccC--------hhhcCCCCCCEEECCCC
Confidence 36643 5667888999988854 43322 2233 58899999888 566554 33446788999987764
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=1.5e-16 Score=160.71 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=79.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc-ccccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL-VPASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+++++.|+++++.....+....+.. +++|+.|++++|. ++.+ |..+..+++|++|++++ +.+..+.+ ...
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~-~~~ 538 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTE---LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDT-FPY 538 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTT---CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT-SCCCBCCC-GGG
T ss_pred cccchhhhhhhhhhcccccccCchhhhh---ccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC-CcCCCCCh-hHH
Confidence 3456788888888876566555555444 8889999999875 4544 55678889999999988 46777644 345
Q ss_pred hccccCCEEEEecccchhhhhccccCCcccceeEe-cccceEecCCCC
Q 047829 354 ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVF-RKLEYLGLDCLP 400 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~-~~L~~L~l~~cp 400 (407)
..+++|+.|+++++ .+..+. +..+..+ ++|++|++++.|
T Consensus 539 ~~l~~L~~L~Ls~N-~l~~~~-------~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 539 KCLNSLQVLDYSLN-HIMTSK-------KQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCC-------SSCTTCCCTTCCEEECTTCC
T ss_pred hCCCCCCEEECCCC-cCCCCC-------HHHHHhhhCcCCEEEeeCCC
Confidence 67889999999888 444443 3445555 579999998765
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=2.1e-18 Score=173.19 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=132.2
Q ss_pred ccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc--------
Q 047829 131 FFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID-------- 202 (407)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------- 202 (407)
.+++|+.|++.+|. +.+......+..+++|+.|+++++-....+.. +...+++|++|++.+
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~----------~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEV----------LAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----------HHHHCTTCCEEEEECCCCSSTTS
T ss_pred hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHH----------HHHhCCCCCEEEeecCccccccc
Confidence 46789999999887 43322223467899999999984321111110 001247899999985
Q ss_pred --cccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc---ccccchhhhccccccccccccc
Q 047829 203 --LPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK---LKSEENLLVADQIQHLFDEKVT 277 (407)
Q Consensus 203 --~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~---~~~l~~~~~~~~~~~~~~~~~~ 277 (407)
|..+..... ......+++|++|++ +|+.++......+...+++|++|++++ |..+++.+...++. .....
T Consensus 360 ~~~~~~~~~~~-~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~---~~~~~ 434 (592)
T 3ogk_B 360 DEEGLVSQRGL-IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR---SLLIG 434 (592)
T ss_dssp STTCCCCHHHH-HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH---HHHHH
T ss_pred cccCccCHHHH-HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH---HHHHh
Confidence 555543100 001235789999999 667777665555556688999999974 44444321000000 01334
Q ss_pred cCCcceEecccccc-cccccccccccccccCCcCceeeccCcccc-ccccccccccccCEEEeccCcCcccccCchhhhc
Q 047829 278 FPQLRFLELSRLHK-VQHLWKENAESNKVFANLKSPEISECSKLQ-KLVPASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 278 l~~L~~L~L~~~~~-l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
+++|+.|++++|.. ++......+. ..+++|+.|++++|..-. .++..+..+++|++|++++|+ +.+.....+...
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIG--QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHH--HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHH--HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 78899999976543 2221111111 126789999998776322 234445678889999999887 554333344556
Q ss_pred cccCCEEEEeccc
Q 047829 356 LVNLERMKITDCK 368 (407)
Q Consensus 356 l~~L~~L~i~~c~ 368 (407)
+++|+.|++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 8899999999885
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=2.6e-16 Score=146.27 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=130.3
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.++|+.|+++++ +++..+... ...+++|++|++++| .+..+ |..+..+++|++|++.++ .+.
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n--------------~l~ 113 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN--------------QLK 113 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS--------------CCS
T ss_pred CCCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC--------------cCC
Confidence 368999999996 577776543 457899999999999 56665 778899999999999651 112
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+|..+. ++|++|+++++. +....... + ..+++|+.|++.+|...........+..+++|+.|++++|. +..+
T Consensus 114 ~l~~~~~--~~L~~L~l~~n~-l~~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l 186 (330)
T 1xku_A 114 ELPEKMP--KTLQELRVHENE-ITKVRKSV-F--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI 186 (330)
T ss_dssp BCCSSCC--TTCCEEECCSSC-CCBBCHHH-H--TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSC
T ss_pred ccChhhc--ccccEEECCCCc-ccccCHhH-h--cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccC
Confidence 2333322 789999999886 33322111 1 34789999999998764321223457889999999999874 3332
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
+. ..+++|++|++.++. +..+. ...+..+++|+.|+++++ .++..++.. ...+++|++|++++
T Consensus 187 ~~------------~~~~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 187 PQ------------GLPPSLTELHLDGNK-ITKVD--AASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNN 249 (330)
T ss_dssp CS------------SCCTTCSEEECTTSC-CCEEC--TGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCS
T ss_pred Cc------------cccccCCEEECCCCc-CCccC--HHHhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCC
Confidence 21 123788888888763 33321 112445677777777764 355544433 23356666666655
Q ss_pred cc
Q 047829 256 LK 257 (407)
Q Consensus 256 ~~ 257 (407)
+.
T Consensus 250 N~ 251 (330)
T 1xku_A 250 NK 251 (330)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=2.1e-16 Score=147.04 Aligned_cols=289 Identities=13% Similarity=0.086 Sum_probs=195.4
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
+++.++++++ .++.+|... .++|++|+++++ .+..++ ..+..+++|++|++.++. +..+
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~ 93 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI----SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK--------------ISKI 93 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC--------------CCEE
T ss_pred cCCEEECCCC-CccccCCCC----CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc--------------cCcc
Confidence 5888888875 577776542 489999999999 576664 468899999999996511 1112
Q ss_pred -HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 98 -YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 98 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
+..+..+++|++|+++++. +.. ++...+++|+.|++.+|... .+ +...+..+++|+.|++++|.. +..+
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~-l~~------l~~~~~~~L~~L~l~~n~i~-~~-~~~~~~~l~~L~~L~l~~n~l-~~~~ 163 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNH-LVE------IPPNLPSSLVELRIHDNRIR-KV-PKGVFSGLRNMNCIEMGGNPL-ENSG 163 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSC-CCS------CCSSCCTTCCEEECCSSCCC-CC-CSGGGSSCSSCCEEECCSCCC-BGGG
T ss_pred CHhHhhCcCCCCEEECCCCc-CCc------cCccccccCCEEECCCCccC-cc-CHhHhCCCccCCEEECCCCcc-ccCC
Confidence 4567788999999999886 443 33333589999999998664 33 334578899999999998753 2111
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKL 256 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 256 (407)
.. ...+. .+ +|+.|+++++. +..++.. .+++|+.|+++++ .++..++.. ...+++|++|+++++
T Consensus 164 ~~------~~~~~-~l-~L~~L~l~~n~-l~~l~~~-----~~~~L~~L~l~~n-~i~~~~~~~-l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 164 FE------PGAFD-GL-KLNYLRISEAK-LTGIPKD-----LPETLNELHLDHN-KIQAIELED-LLRYSKLYRLGLGHN 227 (332)
T ss_dssp SC------TTSSC-SC-CCSCCBCCSSB-CSSCCSS-----SCSSCSCCBCCSS-CCCCCCTTS-STTCTTCSCCBCCSS
T ss_pred CC------ccccc-CC-ccCEEECcCCC-CCccCcc-----ccCCCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC
Confidence 00 00111 22 78888888763 4444332 2378999999885 566665544 345899999999887
Q ss_pred cccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cc------c
Q 047829 257 KSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SW------H 329 (407)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~------~ 329 (407)
..-. +.+ .....+++|+.|+++++ .++.+|.. + ..+++|+.|++++++ ++.++.. +. .
T Consensus 228 ~l~~-~~~--------~~~~~l~~L~~L~L~~N-~l~~lp~~-l---~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 228 QIRM-IEN--------GSLSFLPTLRELHLDNN-KLSRVPAG-L---PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp CCCC-CCT--------TGGGGCTTCCEEECCSS-CCCBCCTT-G---GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSS
T ss_pred cCCc-CCh--------hHhhCCCCCCEEECCCC-cCeecChh-h---hcCccCCEEECCCCC-CCccChhHccccccccc
Confidence 5322 211 12567899999999984 66777765 2 348999999999865 5555432 11 1
Q ss_pred ccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 330 LENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 330 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.++|+.+++++++.......+.....+++|+.++++++.
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 578999999986543222234556678999999998874
No 47
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=4.4e-18 Score=170.90 Aligned_cols=318 Identities=14% Similarity=0.062 Sum_probs=172.3
Q ss_pred eecccceeeeCccccccccccc---ccccccCCccEEeecCCC-ccc--cccccccCCCCcceeEEEeecccccccccCc
Q 047829 16 AFSELKFLILDYLPRLTSFCLE---NYTLEFPSLERVSVTFCP-DMK--TFSQGILSTPKLHKVQVIVKEEGELYHREGN 89 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~l~~c~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 89 (407)
.+++|++|++++|. +...... .....+++|++|++++|. .+. .++.-+..+++|++|++.++
T Consensus 154 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~----------- 221 (594)
T 2p1m_B 154 TCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA----------- 221 (594)
T ss_dssp HCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-----------
T ss_pred hCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-----------
Confidence 46788888888875 4332211 112255677777777774 111 12222244677777777531
Q ss_pred chhhHHHHHHhhcCCCCccEEEeccC-------------------CCccee-ccCC----CCCc--cccCCceEEEEecC
Q 047829 90 LNSTIQKCYKEMIGFRDIWYLQLSYF-------------------PRLKEI-WHGQ----ALPV--SFFNNLCKLVVDDC 143 (407)
Q Consensus 90 ~~~~~~~l~~~~~~~~~L~~L~l~~~-------------------~~l~~~-~~~~----~~~~--~~l~~L~~L~l~~~ 143 (407)
..+..++..+..+++|++|.++.+ ++++.. .... .++. ..+++|+.|++.+|
T Consensus 222 --~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 --VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp --SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred --CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 112224444444455555553322 222211 0000 0111 24688999999988
Q ss_pred CCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc--------cccccccccCCCc
Q 047829 144 TNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID--------LPKLKRFCNFTGN 215 (407)
Q Consensus 144 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~l~~i~~~~~~ 215 (407)
. +.+......+..+++|+.|++++|-....+.. +...+++|++|++.+ +..+..... ...
T Consensus 300 ~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~----------l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-~~l 367 (594)
T 2p1m_B 300 T-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV----------LASTCKDLRELRVFPSEPFVMEPNVALTEQGL-VSV 367 (594)
T ss_dssp C-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----------HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-HHH
T ss_pred C-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH----------HHHhCCCCCEEEEecCcccccccCCCCCHHHH-HHH
Confidence 7 44322223356889999999988721111100 011247888888843 223322100 000
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeecc-----cccccchhhhccccccccc-cccccCCcceEecccc
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ-----KLKSEENLLVADQIQHLFD-EKVTFPQLRFLELSRL 289 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~-----~~~~l~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~ 289 (407)
...+++|+.|.+ +|+.++......+...+++|++|+++ +|..+++..... .+. -...+++|+.|++++
T Consensus 368 ~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~----~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 368 SMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI----GFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH----HHHHHHHHCTTCCEEECCS-
T ss_pred HHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh----HHHHHHhhCCCccEEeecC-
Confidence 124788888844 56677665555555568899999988 455555221100 010 134577899999865
Q ss_pred cccccccccccccccccCCcCceeeccCcccccccccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.++......+. ..+++|+.|++++|......+..+ ..+++|++|++++|+. .+.....+...+++|+.|++++|+
T Consensus 442 -~l~~~~~~~l~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 442 -LLTDKVFEYIG--TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp -SCCHHHHHHHH--HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred -cccHHHHHHHH--HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 33332211111 126789999998876322211122 5578899999988765 433233345567889999998886
Q ss_pred c
Q 047829 369 M 369 (407)
Q Consensus 369 ~ 369 (407)
.
T Consensus 518 ~ 518 (594)
T 2p1m_B 518 V 518 (594)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.3e-15 Score=152.57 Aligned_cols=257 Identities=16% Similarity=0.087 Sum_probs=182.5
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
.+++.|+++++ +++.+|... .++|++|++++| .++.+|. .+++|++|++.++. +..+
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l----~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~--------------l~~l 96 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCL----PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ--------------LTSL 96 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCC----CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC--------------CSCC
T ss_pred CCCcEEEecCC-CcCccChhh----CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc--------------CCcC
Confidence 35888999884 577776653 289999999999 7888885 67899999996521 1123
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
|. .+++|++|+++++. ++. ++. .+++|+.|.+.+|... .++. .+++|++|++++|. +..++.
T Consensus 97 p~---~l~~L~~L~Ls~N~-l~~------l~~-~l~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~-l~~l~~ 158 (622)
T 3g06_A 97 PV---LPPGLLELSIFSNP-LTH------LPA-LPSGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQ-LASLPA 158 (622)
T ss_dssp CC---CCTTCCEEEECSCC-CCC------CCC-CCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSC-CSCCCC
T ss_pred CC---CCCCCCEEECcCCc-CCC------CCC-CCCCcCEEECCCCCCC-cCCC-----CCCCCCEEECcCCc-CCCcCC
Confidence 32 56889999999876 433 222 4688999999987643 3443 24789999999873 333221
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
.+++|+.|.+.++ .+..++ ..+++|+.|+++++ .++.++. .+++|+.|.++++.
T Consensus 159 -------------~~~~L~~L~L~~N-~l~~l~------~~~~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 159 -------------LPSELCKLWAYNN-QLTSLP------MLPSGLQELSVSDN-QLASLPT-----LPSELYKLWAYNNR 212 (622)
T ss_dssp -------------CCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred -------------ccCCCCEEECCCC-CCCCCc------ccCCCCcEEECCCC-CCCCCCC-----ccchhhEEECcCCc
Confidence 3478999998875 455443 24688999999885 4666543 26889999998775
Q ss_pred ccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEE
Q 047829 258 SEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLK 337 (407)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~ 337 (407)
.- .+ ...+++|+.|+++++ .++.++.. +++|+.|+++++ .++.+|. .+++|+.|+
T Consensus 213 l~-~l------------~~~~~~L~~L~Ls~N-~L~~lp~~-------l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 213 LT-SL------------PALPSGLKELIVSGN-RLTSLPVL-------PSELKELMVSGN-RLTSLPM---LPSGLLSLS 267 (622)
T ss_dssp CS-SC------------CCCCTTCCEEECCSS-CCSCCCCC-------CTTCCEEECCSS-CCSCCCC---CCTTCCEEE
T ss_pred cc-cc------------CCCCCCCCEEEccCC-ccCcCCCC-------CCcCcEEECCCC-CCCcCCc---ccccCcEEe
Confidence 32 21 123578999999984 67777732 688999999987 5677775 678999999
Q ss_pred eccCcCcccccCchhhhccccCCEEEEecccc
Q 047829 338 VSKCHGLINLLTLSTSESLVNLERMKITDCKM 369 (407)
Q Consensus 338 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 369 (407)
+++| .+..+ +. ....+++|+.|++++|+-
T Consensus 268 Ls~N-~L~~l-p~-~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 268 VYRN-QLTRL-PE-SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCSS-CCCSC-CG-GGGGSCTTCEEECCSCCC
T ss_pred CCCC-CCCcC-CH-HHhhccccCEEEecCCCC
Confidence 9985 66666 33 356789999999999853
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=2.7e-16 Score=145.01 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=68.5
Q ss_pred CCccEEeecCCCccc--cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 44 PSLERVSVTFCPDMK--TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.++++|+++++.--. .+|..+.++++|++|++.+++. ....+|..+..+++|++|+++++.-....
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------------LVGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------------EESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------------ccccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 689999999984333 6888888999999999963111 11124445566677778877776522122
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
+... ..+++|+.|++++|.....++. .+..+++|++|++++|.
T Consensus 118 p~~~----~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 118 PDFL----SQIKTLVTLDFSYNALSGTLPP--SISSLPNLVGITFDGNR 160 (313)
T ss_dssp CGGG----GGCTTCCEEECCSSEEESCCCG--GGGGCTTCCEEECCSSC
T ss_pred CHHH----hCCCCCCEEeCCCCccCCcCCh--HHhcCCCCCeEECcCCc
Confidence 2211 3467777777777655433332 36677777777777664
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=7.5e-16 Score=144.57 Aligned_cols=237 Identities=13% Similarity=0.106 Sum_probs=125.2
Q ss_pred hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCC
Q 047829 101 MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEE 180 (407)
Q Consensus 101 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 180 (407)
+..+++|++|+++++. +....... | ..+++|+.|++++|... .+ +...+..+++|++|++++|. +..++...
T Consensus 72 ~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~Ls~n~l~-~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~- 143 (353)
T 2z80_A 72 LQRCVNLQALVLTSNG-INTIEEDS-F--SSLGSLEHLDLSYNYLS-NL-SSSWFKPLSSLTFLNLLGNP-YKTLGETS- 143 (353)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSSCCS-SC-CHHHHTTCTTCSEEECTTCC-CSSSCSSC-
T ss_pred hccCCCCCEEECCCCc-cCccCHhh-c--CCCCCCCEEECCCCcCC-cC-CHhHhCCCccCCEEECCCCC-CcccCchh-
Confidence 3455666666666553 33332221 2 23566777777766443 22 22345667777777777653 22222100
Q ss_pred ccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc
Q 047829 181 LSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE 260 (407)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 260 (407)
.+ ..+++|++|++.++..+..+.. ..+..+++|+.|++.++ .++...+.. ...+++|++|+++++.. .
T Consensus 144 ------~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~l~~n~l-~ 211 (353)
T 2z80_A 144 ------LF-SHLTKLQILRVGNMDTFTKIQR--KDFAGLTFLEELEIDAS-DLQSYEPKS-LKSIQNVSHLILHMKQH-I 211 (353)
T ss_dssp ------SC-TTCTTCCEEEEEESSSCCEECT--TTTTTCCEEEEEEEEET-TCCEECTTT-TTTCSEEEEEEEECSCS-T
T ss_pred ------hh-ccCCCCcEEECCCCccccccCH--HHccCCCCCCEEECCCC-CcCccCHHH-HhccccCCeecCCCCcc-c
Confidence 01 1246777777776644444321 12445667777777765 355544433 23466777777766652 2
Q ss_pred hhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcc----ccccccccccccccCEE
Q 047829 261 NLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSK----LQKLVPASWHLENLATL 336 (407)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~~~~~~~~~L~~L 336 (407)
.+... ....+++|+.|+++++ .++.++...+......+.++.++++++.- +..+|..+..+++|++|
T Consensus 212 ~~~~~--------~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 212 LLLEI--------FVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp THHHH--------HHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred cchhh--------hhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 22111 0223667777777773 44444333222222245566666665432 22355566777888888
Q ss_pred EeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 337 KVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 337 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+++++ .+..+ +......+++|++|++++++
T Consensus 283 ~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 283 EFSRN-QLKSV-PDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-CCCcc-CHHHHhcCCCCCEEEeeCCC
Confidence 88874 56555 33344567788888887653
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=3.4e-17 Score=159.34 Aligned_cols=348 Identities=14% Similarity=0.000 Sum_probs=174.7
Q ss_pred ecccceeeeCcccccccccc---cccccccCCccEEeecCCCcccc-ccccc-cCCC----CcceeEEEeeccccccccc
Q 047829 17 FSELKFLILDYLPRLTSFCL---ENYTLEFPSLERVSVTFCPDMKT-FSQGI-LSTP----KLHKVQVIVKEEGELYHRE 87 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~-lp~~~-~~l~----~L~~L~l~~~~~~~~~~~~ 87 (407)
+++|++|++++|. +..... ......+++|++|+++++. +.. .+..+ ..++ +|++|++.+ .
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~---------n 95 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQN---------C 95 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTT---------S
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccC---------C
Confidence 5566666666653 332111 1112245666666666663 322 11111 1122 466666633 1
Q ss_pred CcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCc---cccCCceEEEEecCCCCCcCC--ccchhhccccCC
Q 047829 88 GNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPV---SFFNNLCKLVVDDCTNMSSAI--PVNLLRCLNNLG 162 (407)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~ 162 (407)
.-.......++..+..+++|++|+++++. +....... +.. ...++|+.|++.+|....... ....+..+++|+
T Consensus 96 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 96 CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence 11122344566777777788888887776 33211000 000 113568888887775432110 122355678888
Q ss_pred eeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc--CCCccccCCCccEEeEecCCCCccccCc-
Q 047829 163 WLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN--FTGNIIELPMFWSLTIENCPDMETFISN- 239 (407)
Q Consensus 163 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~- 239 (407)
+|++++|. +...+... +........++|++|++.++. +..... ....+..+++|+.|+++++ .++.....
T Consensus 174 ~L~L~~n~-i~~~~~~~----l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 246 (461)
T 1z7x_W 174 ELTVSNND-INEAGVRV----LCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAE 246 (461)
T ss_dssp EEECCSSB-CHHHHHHH----HHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHH
T ss_pred EEECcCCC-cchHHHHH----HHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHH
Confidence 88888764 22211000 000010113578888887763 222100 0112335678888888776 34433211
Q ss_pred ---ccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccc--ccccCCcCceee
Q 047829 240 ---STSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES--NKVFANLKSPEI 314 (407)
Q Consensus 240 ---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~--~~~~~~L~~L~l 314 (407)
.+...+++|++|++++|..-..-... -......+++|+.|+++++ .++......+.. ....++|+.|++
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGD-----LCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHH-----HHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHH-----HHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEc
Confidence 11223678888888877432210000 0111344678888888874 343322111110 001357888888
Q ss_pred ccCccccc----cccccccccccCEEEeccCcCcccccCchhhh----ccccCCEEEEecccchh-----hhhccccCCc
Q 047829 315 SECSKLQK----LVPASWHLENLATLKVSKCHGLINLLTLSTSE----SLVNLERMKITDCKMME-----EIIQSQVGEE 381 (407)
Q Consensus 315 ~~c~~l~~----l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~----~l~~L~~L~i~~c~~l~-----~~~~~~~g~~ 381 (407)
++|.--.. ++..+..+++|++|+++++ .+.+.....+.. ..++|+.|++++|. +. .++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~------- 391 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA------- 391 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-------
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH-------
Confidence 87763221 3444556688888888875 454442222222 14578888888873 33 232
Q ss_pred ccceeEecccceEecCCCC
Q 047829 382 AEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 382 ~~~~~~~~~L~~L~l~~cp 400 (407)
..+..+++|++|++++++
T Consensus 392 -~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 392 -ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp -HHHHHCCCCCEEECCSSS
T ss_pred -HHHHhCCCccEEECCCCC
Confidence 344557788888887764
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=4.8e-15 Score=143.63 Aligned_cols=296 Identities=19% Similarity=0.147 Sum_probs=149.5
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
++|+.|+++++ .++.+|. .+++|++|+++++ .+..+|.. .++|++|++.++ .+..+
T Consensus 91 ~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n--------------~l~~l 146 (454)
T 1jl5_A 91 PHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNN--------------QLEKL 146 (454)
T ss_dssp TTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSS--------------CCSSC
T ss_pred CCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcccCC---CCCCCEEECcCC--------------CCCCC
Confidence 57888888774 4555542 2377888888887 56555521 257888888541 11223
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
| ++..+++|++|+++++. ++. +| ....+|+.|++++|.... ++ . ++.+++|+.|++++|. +..++.
T Consensus 147 p-~~~~l~~L~~L~l~~N~-l~~------lp-~~~~~L~~L~L~~n~l~~-l~-~--~~~l~~L~~L~l~~N~-l~~l~~ 212 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNS-LKK------LP-DLPPSLEFIAAGNNQLEE-LP-E--LQNLPFLTAIYADNNS-LKKLPD 212 (454)
T ss_dssp C-CCTTCTTCCEEECCSSC-CSC------CC-CCCTTCCEEECCSSCCSS-CC-C--CTTCTTCCEEECCSSC-CSSCCC
T ss_pred c-ccCCCCCCCEEECCCCc-Ccc------cC-CCcccccEEECcCCcCCc-Cc-c--ccCCCCCCEEECCCCc-CCcCCC
Confidence 3 35667778888888765 332 22 123578888887765433 33 2 5777778888777763 222211
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
..++|+.|+++++ .+..++. +..+++|+.|+++++ ++++++. .+++|++|+++++.
T Consensus 213 -------------~~~~L~~L~l~~n-~l~~lp~----~~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 213 -------------LPLSLESIVAGNN-ILEELPE----LQNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDNY 268 (454)
T ss_dssp -------------CCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSSC
T ss_pred -------------CcCcccEEECcCC-cCCcccc----cCCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCCc
Confidence 1246666666655 3333321 335566666666553 3443322 13555556555543
Q ss_pred ccchhhhc----ccccc---ccccc-cccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccc
Q 047829 258 SEENLLVA----DQIQH---LFDEK-VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWH 329 (407)
Q Consensus 258 ~l~~~~~~----~~~~~---~~~~~-~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 329 (407)
.. .+... ..+.. .+... ...++|+.|+++++ .+..++.. .++|+.|+++++. +..+|..
T Consensus 269 l~-~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N-~l~~i~~~-------~~~L~~L~Ls~N~-l~~lp~~--- 335 (454)
T 1jl5_A 269 LT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSLCDL-------PPSLEELNVSNNK-LIELPAL--- 335 (454)
T ss_dssp CS-CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCSEECCC-------CTTCCEEECCSSC-CSCCCCC---
T ss_pred cc-ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC-cCCcccCC-------cCcCCEEECCCCc-ccccccc---
Confidence 21 11000 00000 00000 01245666666652 33333211 2478888887753 4555543
Q ss_pred ccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEe-------------cccceEec
Q 047829 330 LENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVF-------------RKLEYLGL 396 (407)
Q Consensus 330 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~-------------~~L~~L~l 396 (407)
+++|++|++++| .+..++. .+++|++|+++++. +..++ ..+..+..+ ++|++|++
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~-----~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFP-----DIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCC-----CCCTTCCEEECCC-----------------
T ss_pred CCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCC-----CChHHHHhhhhcccccccccccCcCCEEEC
Confidence 578888888874 5555532 35788888888773 33311 112233333 67888888
Q ss_pred CCCC
Q 047829 397 DCLP 400 (407)
Q Consensus 397 ~~cp 400 (407)
++++
T Consensus 404 s~N~ 407 (454)
T 1jl5_A 404 ETNP 407 (454)
T ss_dssp ----
T ss_pred CCCc
Confidence 7754
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=3.3e-15 Score=144.76 Aligned_cols=263 Identities=19% Similarity=0.109 Sum_probs=129.0
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+++|+.|+++++ ++..++.. .++|++|++++| .+..+| .++.+++|++|++.++.- ..
T Consensus 110 ~~~L~~L~l~~n-~l~~l~~~-----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l--------------~~ 167 (454)
T 1jl5_A 110 PQSLKSLLVDNN-NLKALSDL-----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSL--------------KK 167 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCSC-----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCC--------------SC
T ss_pred cCCCcEEECCCC-ccCcccCC-----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcC--------------cc
Confidence 367888888875 45544322 267888888888 666777 577888888888854211 00
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCC-------------------cCCccchhhc
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMS-------------------SAIPVNLLRC 157 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~~~~~~ 157 (407)
+|. ...+|++|+++++. +...+ . + ..+++|+.|++.+|.... .++. ++.
T Consensus 168 lp~---~~~~L~~L~L~~n~-l~~l~-~--~--~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~---~~~ 235 (454)
T 1jl5_A 168 LPD---LPPSLEFIAAGNNQ-LEELP-E--L--QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE---LQN 235 (454)
T ss_dssp CCC---CCTTCCEEECCSSC-CSSCC-C--C--TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC---CTT
T ss_pred cCC---CcccccEEECcCCc-CCcCc-c--c--cCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc---cCC
Confidence 111 11355555555543 22221 1 1 224455555555443321 2221 344
Q ss_pred cccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcccc
Q 047829 158 LNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFI 237 (407)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 237 (407)
+++|+.|++++|. +..++ ..+++|+.|++.++. +..++. .+++|+.|+++++ .+++++
T Consensus 236 l~~L~~L~l~~N~-l~~l~-------------~~~~~L~~L~l~~N~-l~~l~~------~~~~L~~L~ls~N-~l~~l~ 293 (454)
T 1jl5_A 236 LPFLTTIYADNNL-LKTLP-------------DLPPSLEALNVRDNY-LTDLPE------LPQSLTFLDVSEN-IFSGLS 293 (454)
T ss_dssp CTTCCEEECCSSC-CSSCC-------------SCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSEES
T ss_pred CCCCCEEECCCCc-CCccc-------------ccccccCEEECCCCc-ccccCc------ccCcCCEEECcCC-ccCccc
Confidence 4444444444432 11111 012445555554432 222211 1245555555553 233332
Q ss_pred CcccccccCCCceeecccccccchhhhcccccccccccccc-CCcceEecccccccccccccccccccccCCcCceeecc
Q 047829 238 SNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTF-PQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISE 316 (407)
Q Consensus 238 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~ 316 (407)
. ..++|+.|+++++.... ...+ ++|+.|++++ ..+..++.. +++|+.|++++
T Consensus 294 ~-----~~~~L~~L~l~~N~l~~--------------i~~~~~~L~~L~Ls~-N~l~~lp~~-------~~~L~~L~L~~ 346 (454)
T 1jl5_A 294 E-----LPPNLYYLNASSNEIRS--------------LCDLPPSLEELNVSN-NKLIELPAL-------PPRLERLIASF 346 (454)
T ss_dssp C-----CCTTCCEEECCSSCCSE--------------ECCCCTTCCEEECCS-SCCSCCCCC-------CTTCCEEECCS
T ss_pred C-----cCCcCCEEECcCCcCCc--------------ccCCcCcCCEEECCC-Ccccccccc-------CCcCCEEECCC
Confidence 1 12455555555443211 1223 4889999988 456666643 67899999988
Q ss_pred CccccccccccccccccCEEEeccCcCcccc--cCchhhhcc-------------ccCCEEEEeccc
Q 047829 317 CSKLQKLVPASWHLENLATLKVSKCHGLINL--LTLSTSESL-------------VNLERMKITDCK 368 (407)
Q Consensus 317 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~l-------------~~L~~L~i~~c~ 368 (407)
+ .++.+|. .+++|++|+++++ .+..+ .+. ....+ ++|+.|++++++
T Consensus 347 N-~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 347 N-HLAEVPE---LPQNLKQLHVEYN-PLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSS-CCSSCCCCCT-TCCEEECCC---------------------
T ss_pred C-ccccccc---hhhhccEEECCCC-CCCcCCCChH-HHHhhhhcccccccccccCcCCEEECCCCc
Confidence 7 4566765 4688999999874 44442 122 22233 678888888873
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=1.3e-14 Score=145.24 Aligned_cols=235 Identities=18% Similarity=0.098 Sum_probs=141.7
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
++|+.|+++++ +++.+|. .+++|++|++++| .+..+|. .+++|++|++.++ .+..+
T Consensus 61 ~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N--------------~l~~l 116 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN--------------PLTHL 116 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC--------------CCCCC
T ss_pred CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC--------------cCCCC
Confidence 57777877775 4665544 3577888888877 5667774 6677787777541 11112
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
|. .+++|++|+++++. +.. +| ..+++|+.|++++|... .++. .+++|+.|++++|. +..++
T Consensus 117 ~~---~l~~L~~L~L~~N~-l~~------lp-~~l~~L~~L~Ls~N~l~-~l~~-----~~~~L~~L~L~~N~-l~~l~- 177 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQ-LTS------LP-VLPPGLQELSVSDNQLA-SLPA-----LPSELCKLWAYNNQ-LTSLP- 177 (622)
T ss_dssp CC---CCTTCCEEECCSSC-CSC------CC-CCCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSC-CSCCC-
T ss_pred CC---CCCCcCEEECCCCC-CCc------CC-CCCCCCCEEECcCCcCC-CcCC-----ccCCCCEEECCCCC-CCCCc-
Confidence 21 34667777777765 332 22 22477778887776443 3322 23567777777653 33322
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
..+++|+.|+++++. +..++. .+++|+.|++.++ .++.++. .+++|+.|+++++.
T Consensus 178 ------------~~~~~L~~L~Ls~N~-l~~l~~------~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 178 ------------MLPSGLQELSVSDNQ-LASLPT------LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR 232 (622)
T ss_dssp ------------CCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSSC
T ss_pred ------------ccCCCCcEEECCCCC-CCCCCC------ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCCc
Confidence 134777777777653 443321 2467777777764 4544432 25677777777663
Q ss_pred ccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEE
Q 047829 258 SEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLK 337 (407)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~ 337 (407)
+..+ ...+++|+.|+++++ .++.++.. +++|+.|++++| .++.+|..+..+++|+.|+
T Consensus 233 -L~~l------------p~~l~~L~~L~Ls~N-~L~~lp~~-------~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 233 -LTSL------------PVLPSELKELMVSGN-RLTSLPML-------PSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp -CSCC------------CCCCTTCCEEECCSS-CCSCCCCC-------CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEE
T ss_pred -cCcC------------CCCCCcCcEEECCCC-CCCcCCcc-------cccCcEEeCCCC-CCCcCCHHHhhccccCEEE
Confidence 2221 133567778888773 56666652 567777888776 4557777777777888888
Q ss_pred eccCc
Q 047829 338 VSKCH 342 (407)
Q Consensus 338 l~~c~ 342 (407)
+++++
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 87743
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=7.1e-15 Score=135.50 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=80.6
Q ss_pred ccCCCccEEeEecCCCCccccCcccccccC-CCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 217 IELPMFWSLTIENCPDMETFISNSTSILHM-TADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 217 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
..+++|++|++.++ .+++..+..+.. ++ +|++|+++++.....++.. ...+. |+.|+++++ .+...
T Consensus 146 ~~l~~L~~L~L~~N-~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~---------~~~l~-L~~L~Ls~N-~l~~~ 212 (313)
T 1ogq_A 146 SSLPNLVGITFDGN-RISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPT---------FANLN-LAFVDLSRN-MLEGD 212 (313)
T ss_dssp GGCTTCCEEECCSS-CCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGG---------GGGCC-CSEEECCSS-EEEEC
T ss_pred hcCCCCCeEECcCC-cccCcCCHHHhh-hhhcCcEEECcCCeeeccCChH---------HhCCc-ccEEECcCC-cccCc
Confidence 34556666666553 344333333222 33 6666666655432211111 22333 666777663 33333
Q ss_pred cccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhc
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQ 375 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 375 (407)
....+.. +++|+.|+++++.. ...++.+..+++|++|+++++ .+....+. ....+++|+.|++++|.--..++
T Consensus 213 ~~~~~~~---l~~L~~L~L~~N~l-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip- 285 (313)
T 1ogq_A 213 ASVLFGS---DKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNN-RIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP- 285 (313)
T ss_dssp CGGGCCT---TSCCSEEECCSSEE-CCBGGGCCCCTTCCEEECCSS-CCEECCCG-GGGGCTTCCEEECCSSEEEEECC-
T ss_pred CCHHHhc---CCCCCEEECCCCce-eeecCcccccCCCCEEECcCC-cccCcCCh-HHhcCcCCCEEECcCCcccccCC-
Confidence 3333332 66777777776543 322233556677777777764 34433232 34456777777777763222222
Q ss_pred cccCCcccceeEecccceEecCCCCCcc
Q 047829 376 SQVGEEAEDCIVFRKLEYLGLDCLPSLT 403 (407)
Q Consensus 376 ~~~g~~~~~~~~~~~L~~L~l~~cp~l~ 403 (407)
.. ..+++|+.+++++.|.+.
T Consensus 286 -------~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 286 -------QG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -------CS-TTGGGSCGGGTCSSSEEE
T ss_pred -------CC-ccccccChHHhcCCCCcc
Confidence 22 456677777777766443
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=2.3e-14 Score=144.67 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=104.3
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++|+.+.+..+....... ...+..+++++.+++..+ .+....+. ....+++++.|+++++.....+.+.
T Consensus 420 ~~L~~l~l~~~~~~~~~~--~~~~~~l~~l~~l~ls~n-~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~------- 488 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD------- 488 (635)
T ss_dssp TTCCEEECTTSEEESTTS--SCTTTTCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTCEEGGGEECS-------
T ss_pred ccccchhhhhcccccccc--cccccccccccccccccc-cccccccc-ccccchhhhhhhhhhcccccccCch-------
Confidence 556666655443322211 112445667777777653 45444443 3445788999999888765543222
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccc-cccccccccCEEEeccCcCcccccCch
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV-PASWHLENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~ 351 (407)
....+++|+.|+++++ .++.++...+.. +++|+.|+++++. ++.++ ..+..+++|++|++++ +.+..+++..
T Consensus 489 -~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~---l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 561 (635)
T 4g8a_A 489 -IFTELRNLTFLDLSQC-QLEQLSPTAFNS---LSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQE 561 (635)
T ss_dssp -CCTTCTTCCEEECTTS-CCCEECTTTTTT---CTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSC
T ss_pred -hhhhccccCEEECCCC-ccCCcChHHHcC---CCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCC-CcCCCCCHHH
Confidence 2566899999999995 677777666654 8999999999874 56554 3567899999999998 5677775544
Q ss_pred hhhcc-ccCCEEEEec
Q 047829 352 TSESL-VNLERMKITD 366 (407)
Q Consensus 352 ~~~~l-~~L~~L~i~~ 366 (407)
+ ..+ ++|+.|++++
T Consensus 562 l-~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 562 L-QHFPSSLAFLNLTQ 576 (635)
T ss_dssp T-TCCCTTCCEEECTT
T ss_pred H-HhhhCcCCEEEeeC
Confidence 3 445 6899999975
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=2.8e-14 Score=138.38 Aligned_cols=241 Identities=19% Similarity=0.150 Sum_probs=105.5
Q ss_pred cEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH-HHhhcCCCCccEEEeccCCCcceeccCC
Q 047829 47 ERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC-YKEMIGFRDIWYLQLSYFPRLKEIWHGQ 125 (407)
Q Consensus 47 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 125 (407)
+.++.++. .+..+|..+. +++++|++.+. .+..+ +..+..+++|++|+++++. +.......
T Consensus 57 ~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n--------------~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 118 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGIP--SNTRYLNLMEN--------------NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA 118 (452)
T ss_dssp CEEECCSS-CCSSCCSCCC--TTCSEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred cEEEECCC-CcCccCCCCC--CCccEEECcCC--------------cCceECHHHcCCCCCCCEEECCCCc-cCCcChhh
Confidence 44544443 5556664433 46666666431 11111 2234455666666666654 33332222
Q ss_pred CCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccc
Q 047829 126 ALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPK 205 (407)
Q Consensus 126 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (407)
| ..+++|+.|++++|... .+ +...+..+++|++|++++|. +..++... + ..+++|+.|++.++..
T Consensus 119 -~--~~l~~L~~L~L~~n~l~-~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--------~-~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 119 -F--NGLASLNTLELFDNWLT-VI-PSGAFEYLSKLRELWLRNNP-IESIPSYA--------F-NRVPSLMRLDLGELKK 183 (452)
T ss_dssp -T--TTCTTCCEEECCSSCCS-BC-CTTTSSSCTTCCEEECCSCC-CCEECTTT--------T-TTCTTCCEEECCCCTT
T ss_pred -c--cCcccCCEEECCCCcCC-cc-ChhhhcccCCCCEEECCCCC-cceeCHhH--------H-hcCCcccEEeCCCCCC
Confidence 2 22556666666665432 22 22334556666666666543 22222100 0 1235566666655555
Q ss_pred ccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEe
Q 047829 206 LKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLE 285 (407)
Q Consensus 206 l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 285 (407)
+..+... .+..+++|+.|+++++ +++.++. ...+++|+.|+++++....... ..+..+++|+.|+
T Consensus 184 l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 184 LEYISEG--AFEGLFNLKYLNLGMC-NIKDMPN---LTPLVGLEELEMSGNHFPEIRP---------GSFHGLSSLKKLW 248 (452)
T ss_dssp CCEECTT--TTTTCTTCCEEECTTS-CCSSCCC---CTTCTTCCEEECTTSCCSEECG---------GGGTTCTTCCEEE
T ss_pred ccccChh--hccCCCCCCEEECCCC-ccccccc---ccccccccEEECcCCcCcccCc---------ccccCccCCCEEE
Confidence 5443221 2334555555555553 3333321 1234555555554443211100 0133344555555
Q ss_pred cccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEecc
Q 047829 286 LSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSK 340 (407)
Q Consensus 286 L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 340 (407)
+++ +.+..++...+.. +++|+.|+++++ +++.+|. .+..+++|++|++++
T Consensus 249 L~~-n~l~~~~~~~~~~---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 249 VMN-SQVSLIERNAFDG---LASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CTT-SCCCEECTTTTTT---CTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred eCC-CcCceECHHHhcC---CCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 554 2333333333322 445555555544 2333332 223444555555544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=3.6e-16 Score=144.50 Aligned_cols=246 Identities=13% Similarity=0.029 Sum_probs=142.9
Q ss_pred ccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 42 EFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
.+++|++|+++++ .+..++ ..+..+++|++|++.+ +. +..
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-------------------------------------n~-l~~ 72 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSS-------------------------------------NV-LYE 72 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTT-------------------------------------SC-CEE
T ss_pred cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCC-------------------------------------Cc-CCc
Confidence 4567888888887 555443 4556666677666633 22 111
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEec
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRL 200 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 200 (407)
... + ..+++|+.|++++|... . +...++|+.|++++|. +..++. ..+++|+.|++
T Consensus 73 ~~~---~--~~l~~L~~L~Ls~n~l~-~------l~~~~~L~~L~l~~n~-l~~~~~------------~~~~~L~~L~l 127 (317)
T 3o53_A 73 TLD---L--ESLSTLRTLDLNNNYVQ-E------LLVGPSIETLHAANNN-ISRVSC------------SRGQGKKNIYL 127 (317)
T ss_dssp EEE---E--TTCTTCCEEECCSSEEE-E------EEECTTCCEEECCSSC-CSEEEE------------CCCSSCEEEEC
T ss_pred chh---h--hhcCCCCEEECcCCccc-c------ccCCCCcCEEECCCCc-cCCcCc------------cccCCCCEEEC
Confidence 100 0 22455666666555322 1 1223566666666653 222221 12466677776
Q ss_pred cccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCC
Q 047829 201 IDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQ 280 (407)
Q Consensus 201 ~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~ 280 (407)
.++. +..+.. ..+..+++|+.|+++++ .++...+..+...+++|++|+++++..- .+ +....+++
T Consensus 128 ~~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~----------~~~~~l~~ 192 (317)
T 3o53_A 128 ANNK-ITMLRD--LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY-DV----------KGQVVFAK 192 (317)
T ss_dssp CSSC-CCSGGG--BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC-EE----------ECCCCCTT
T ss_pred CCCC-CCCccc--hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCc-cc----------cccccccc
Confidence 6553 222211 12345677777777764 4555555444445778888888776532 11 11334778
Q ss_pred cceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCC
Q 047829 281 LRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLE 360 (407)
Q Consensus 281 L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 360 (407)
|+.|++++ ..++.++.. +. .+++|+.|+++++ .++.+|..+..+++|+.|++++++-.... ...+...++.|+
T Consensus 193 L~~L~Ls~-N~l~~l~~~-~~---~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~-~~~~~~~~~~L~ 265 (317)
T 3o53_A 193 LKTLDLSS-NKLAFMGPE-FQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGT-LRDFFSKNQRVQ 265 (317)
T ss_dssp CCEEECCS-SCCCEECGG-GG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHH-HHHHHHTCHHHH
T ss_pred CCEEECCC-CcCCcchhh-hc---ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcC-HHHHHhccccce
Confidence 88888888 456666655 32 3788999999886 46678877788889999999885433132 234556677777
Q ss_pred EEEEecccchhhh
Q 047829 361 RMKITDCKMMEEI 373 (407)
Q Consensus 361 ~L~i~~c~~l~~~ 373 (407)
.+++.++..++..
T Consensus 266 ~l~l~~~~~l~~~ 278 (317)
T 3o53_A 266 TVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHSS
T ss_pred EEECCCchhccCC
Confidence 7777766555443
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=1.8e-14 Score=139.73 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=151.2
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
+++++|+++++. ++...... | ..+++|+.|++++|... .++ ...+..+++|+.|++++|. +..++...
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n~i~-~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~----- 142 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADT-F--RHLHHLEVLQLGRNSIR-QIE-VGAFNGLASLNTLELFDNW-LTVIPSGA----- 142 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSSC-CSBCCTTT-----
T ss_pred CCccEEECcCCc-CceECHHH-c--CCCCCCCEEECCCCccC-CcC-hhhccCcccCCEEECCCCc-CCccChhh-----
Confidence 578999998876 55443332 3 34788999999887554 333 2447788899999998864 44332110
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
+ ..+++|++|+++++. +..++. ..+..+++|+.|++.+|+.+..++... +..+++|++|+++++..- .+
T Consensus 143 ---~-~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~-~~-- 211 (452)
T 3zyi_A 143 ---F-EYLSKLRELWLRNNP-IESIPS--YAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMCNIK-DM-- 211 (452)
T ss_dssp ---S-SSCTTCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTSCCS-SC--
T ss_pred ---h-cccCCCCEEECCCCC-cceeCH--hHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCCccc-cc--
Confidence 1 135788899888763 444332 235578889999998888887776544 345888888888877532 11
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCc
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGL 344 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 344 (407)
+....+++|+.|++++ +.+..++...+.. +++|+.|+++++......+..+..+++|++|+++++ .+
T Consensus 212 --------~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 212 --------PNLTPLVGLEELEMSG-NHFPEIRPGSFHG---LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp --------CCCTTCTTCCEEECTT-SCCSEECGGGGTT---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred --------ccccccccccEEECcC-CcCcccCcccccC---ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cC
Confidence 2255678888888888 4566665555544 788888888887543334455677888888888874 66
Q ss_pred ccccCchhhhccccCCEEEEecc
Q 047829 345 INLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
..+++ .....+++|+.|++.++
T Consensus 279 ~~~~~-~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 279 SSLPH-DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SCCCT-TSSTTCTTCCEEECCSS
T ss_pred CccCh-HHhccccCCCEEEccCC
Confidence 66533 34556788888888765
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=1.7e-14 Score=139.52 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=156.6
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
+++++|+++++. ++...... | ..+++|+.|++++|... .+ +...+..+++|+.|++++| .++.++...
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n~i~-~i-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~----- 131 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRNHIR-TI-EIGAFNGLANLNTLELFDN-RLTTIPNGA----- 131 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSSCCC-EE-CGGGGTTCSSCCEEECCSS-CCSSCCTTT-----
T ss_pred CCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCCcCC-cc-ChhhccCCccCCEEECCCC-cCCeeCHhH-----
Confidence 678999999876 55544333 3 34789999999987654 33 3345788999999999986 344433210
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
+ ..+++|++|+++++. +..+.. ..+..+++|+.|++.+++.+..+++.. +..+++|++|+++++..- .+
T Consensus 132 ---~-~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~-~~-- 200 (440)
T 3zyj_A 132 ---F-VYLSKLKELWLRNNP-IESIPS--YAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLR-EI-- 200 (440)
T ss_dssp ---S-CSCSSCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCSSCCEEECTTSCCS-SC--
T ss_pred ---h-hccccCceeeCCCCc-ccccCH--HHhhhCcccCEeCCCCCCCcceeCcch-hhcccccCeecCCCCcCc-cc--
Confidence 1 135889999998764 444332 235578899999999888888776544 445889999999887532 21
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCc
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGL 344 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 344 (407)
+....+++|+.|+++++ .++.++...+.. +++|+.|++.++..-...+..+..+++|++|++++ +.+
T Consensus 201 --------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l 267 (440)
T 3zyj_A 201 --------PNLTPLIKLDELDLSGN-HLSAIRPGSFQG---LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNL 267 (440)
T ss_dssp --------CCCTTCSSCCEEECTTS-CCCEECTTTTTT---CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCC
T ss_pred --------cccCCCcccCEEECCCC-ccCccChhhhcc---CccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCC
Confidence 22566789999999984 666666655554 88899999988754333344567788999999988 466
Q ss_pred ccccCchhhhccccCCEEEEecc
Q 047829 345 INLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
..+++ .....+++|+.|++.++
T Consensus 268 ~~~~~-~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 268 TLLPH-DLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCCCT-TTTSSCTTCCEEECCSS
T ss_pred CccCh-hHhccccCCCEEEcCCC
Confidence 66633 44567788999988765
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=4e-14 Score=136.86 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=175.0
Q ss_pred CccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHH-HhhcCCCCccEEEeccCCCcceecc
Q 047829 45 SLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCY-KEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
..+.++.++. .++.+|..+. +++++|++.++ .+..++ ..+..+++|++|+++++. +.....
T Consensus 44 ~~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n--------------~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~ 105 (440)
T 3zyj_A 44 QFSKVICVRK-NLREVPDGIS--TNTRLLNLHEN--------------QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEI 105 (440)
T ss_dssp TSCEEECCSC-CCSSCCSCCC--TTCSEEECCSC--------------CCCEECTTTTSSCSSCCEEECCSSC-CCEECG
T ss_pred CCCEEEeCCC-CcCcCCCCCC--CCCcEEEccCC--------------cCCeeCHHHhhCCCCCCEEECCCCc-CCccCh
Confidence 4566776665 7888997654 68999999651 111122 456788999999999986 554433
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDL 203 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (407)
.. | ..+++|+.|++++|... .++ ...+..+++|++|++++|. +..++... + ..+++|+.|++.++
T Consensus 106 ~~-~--~~l~~L~~L~L~~n~l~-~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~--------~-~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 106 GA-F--NGLANLNTLELFDNRLT-TIP-NGAFVYLSKLKELWLRNNP-IESIPSYA--------F-NRIPSLRRLDLGEL 170 (440)
T ss_dssp GG-G--TTCSSCCEEECCSSCCS-SCC-TTTSCSCSSCCEEECCSCC-CCEECTTT--------T-TTCTTCCEEECCCC
T ss_pred hh-c--cCCccCCEEECCCCcCC-eeC-HhHhhccccCceeeCCCCc-ccccCHHH--------h-hhCcccCEeCCCCC
Confidence 22 3 34799999999998554 433 3457889999999999874 44443211 1 13589999999998
Q ss_pred ccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcce
Q 047829 204 PKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRF 283 (407)
Q Consensus 204 ~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~ 283 (407)
..+..+... .+..+++|+.|++.++ +++.++. ...+++|+.|+++++.. ..+.+ ..+..+++|+.
T Consensus 171 ~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l-~~~~~--------~~~~~l~~L~~ 235 (440)
T 3zyj_A 171 KRLSYISEG--AFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGNHL-SAIRP--------GSFQGLMHLQK 235 (440)
T ss_dssp TTCCEECTT--TTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTSCC-CEECT--------TTTTTCTTCCE
T ss_pred CCcceeCcc--hhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCCcc-CccCh--------hhhccCccCCE
Confidence 887766432 3567899999999986 5666643 34589999999998853 32211 12567899999
Q ss_pred EecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 284 LELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 284 L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
|++++ +.+..++...+.. +++|+.|+++++. ++.++. .+..+++|+.|++++++
T Consensus 236 L~L~~-n~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQ-SQIQVIERNAFDN---LQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTT-CCCCEECTTSSTT---CTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCC-CceeEEChhhhcC---CCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 99998 4677777666654 8999999999974 566654 45778999999999854
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=9.5e-16 Score=141.64 Aligned_cols=193 Identities=11% Similarity=0.015 Sum_probs=121.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|+.|+++++ +++..+... ...+++|++|++++| .+..++. +..+++|++|++.++. +.
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~--------------l~ 93 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY--------------VQ 93 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSE--------------EE
T ss_pred cCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCc--------------cc
Confidence 3568999999996 576665432 457899999999999 6666654 7889999999996411 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+...++|++|+++++. +..... ..+++|+.|.+.+|.... ++ ...+..+++|+.|++++|. +..+
T Consensus 94 ----~l~~~~~L~~L~l~~n~-l~~~~~------~~~~~L~~L~l~~N~l~~-~~-~~~~~~l~~L~~L~Ls~N~-l~~~ 159 (317)
T 3o53_A 94 ----ELLVGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANNKITM-LR-DLDEGCRSRVQYLDLKLNE-IDTV 159 (317)
T ss_dssp ----EEEECTTCCEEECCSSC-CSEEEE------CCCSSCEEEECCSSCCCS-GG-GBCTGGGSSEEEEECTTSC-CCEE
T ss_pred ----cccCCCCcCEEECCCCc-cCCcCc------cccCCCCEEECCCCCCCC-cc-chhhhccCCCCEEECCCCC-CCcc
Confidence 11233789999999876 444332 336889999999876543 22 2346778899999998864 3333
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
.... +...+++|+.|+++++. +..+.. ...+++|+.|+++++ .++.+++. ...+++|+.|++++
T Consensus 160 ~~~~--------~~~~l~~L~~L~L~~N~-l~~~~~----~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 160 NFAE--------LAASSDTLEHLNLQYNF-IYDVKG----QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRN 223 (317)
T ss_dssp EGGG--------GGGGTTTCCEEECTTSC-CCEEEC----CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTT
T ss_pred cHHH--------HhhccCcCCEEECCCCc-Cccccc----ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcC
Confidence 2111 00124778888887763 443321 123566777777664 44444332 22345555555554
Q ss_pred c
Q 047829 256 L 256 (407)
Q Consensus 256 ~ 256 (407)
+
T Consensus 224 N 224 (317)
T 3o53_A 224 N 224 (317)
T ss_dssp S
T ss_pred C
Confidence 4
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=3e-14 Score=130.83 Aligned_cols=229 Identities=16% Similarity=0.106 Sum_probs=126.0
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
++|++|+++++. ++..+... + ..+++|+.|++.+|...........+..+++|++|++++|. +..++..
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~------ 96 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN------ 96 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE------
T ss_pred CCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhh------
Confidence 567888887765 44333222 2 23677888888776543210011234567778888887764 3332211
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
+. .+++|++|++.++. +..+.. ...+..+++|+.|+++++ .+....+.. ...+++|++|+++++.......+
T Consensus 97 ---~~-~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 97 ---FL-GLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp ---EE-TCTTCCEEECTTSE-EESSTT-TTTTTTCTTCCEEECTTS-CCEECSTTT-TTTCTTCCEEECTTCEEGGGEEC
T ss_pred ---cC-CCCCCCEEECCCCc-cccccc-chhhhhccCCCEEECCCC-cCCccchhh-cccCcCCCEEECCCCccccccch
Confidence 11 24777888777653 333221 112446677788877765 344443332 33467777777777653321111
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcC
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHG 343 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 343 (407)
.....+++|+.|+++++ .++.++...+.. +++|+.|+++++. +..++. .+..+++|++|+++++ .
T Consensus 169 --------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~ 234 (306)
T 2z66_A 169 --------DIFTELRNLTFLDLSQC-QLEQLSPTAFNS---LSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-H 234 (306)
T ss_dssp --------SCCTTCTTCCEEECTTS-CCCEECTTTTTT---CTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-C
T ss_pred --------hHHhhCcCCCEEECCCC-CcCCcCHHHhcC---CCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC-C
Confidence 12445677777777773 455554444433 6777777777764 333332 4556677777777764 4
Q ss_pred cccccCchhhhcc-ccCCEEEEecc
Q 047829 344 LINLLTLSTSESL-VNLERMKITDC 367 (407)
Q Consensus 344 l~~~~~~~~~~~l-~~L~~L~i~~c 367 (407)
+....+.. ...+ ++|+.|+++++
T Consensus 235 l~~~~~~~-~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 235 IMTSKKQE-LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCBCSSSS-CCCCCTTCCEEECTTC
T ss_pred CcccCHHH-HHhhhccCCEEEccCC
Confidence 44443322 2234 47777777665
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=135.45 Aligned_cols=255 Identities=12% Similarity=0.079 Sum_probs=128.3
Q ss_pred CCccEEeecCCCccccccc-cccCCCCcceeEEEeecccccccccCcchhhHHHH-HHhhcCCCCccEEEeccCCCccee
Q 047829 44 PSLERVSVTFCPDMKTFSQ-GILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC-YKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
++|++|+++++ .++.+|. .+..+++|++|++.++ .+..+ +..+..+++|++|+++++. ++..
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 115 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN--------------GINTIEEDSFSSLGSLEHLDLSYNY-LSNL 115 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEECCSSC-CSSC
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC--------------ccCccCHhhcCCCCCCCEEECCCCc-CCcC
Confidence 46666666666 4555554 4555666666666331 11111 1234455666666666654 2222
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
+... + ..+++|+.|++++|... .++....+..+++|+.|++++|+.+..+.... +. .+++|+.|+++
T Consensus 116 ~~~~-~--~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------~~-~l~~L~~L~l~ 182 (353)
T 2z80_A 116 SSSW-F--KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD--------FA-GLTFLEELEID 182 (353)
T ss_dssp CHHH-H--TTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT--------TT-TCCEEEEEEEE
T ss_pred CHhH-h--CCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH--------cc-CCCCCCEEECC
Confidence 1110 1 23566666666665433 23331335566666666666664444432111 01 23566666666
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCc
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQL 281 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L 281 (407)
++. +..+. ...+..+++|++|++.++. ++.++. .+...+++|+.|+++++..-...+. ........+.+
T Consensus 183 ~n~-l~~~~--~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~~~~~~l 251 (353)
T 2z80_A 183 ASD-LQSYE--PKSLKSIQNVSHLILHMKQ-HILLLE-IFVDVTSSVECLELRDTDLDTFHFS------ELSTGETNSLI 251 (353)
T ss_dssp ETT-CCEEC--TTTTTTCSEEEEEEEECSC-STTHHH-HHHHHTTTEEEEEEESCBCTTCCCC------------CCCCC
T ss_pred CCC-cCccC--HHHHhccccCCeecCCCCc-cccchh-hhhhhcccccEEECCCCcccccccc------ccccccccchh
Confidence 543 22211 1123455667777776643 333322 2233466777777766543211000 00111224455
Q ss_pred ceEeccccc----ccccccccccccccccCCcCceeeccCcccccccccc-ccccccCEEEeccCcC
Q 047829 282 RFLELSRLH----KVQHLWKENAESNKVFANLKSPEISECSKLQKLVPAS-WHLENLATLKVSKCHG 343 (407)
Q Consensus 282 ~~L~L~~~~----~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~ 343 (407)
+.+++..+. .+..++.. +..+++|+.|+++++ .++.+|..+ ..+++|++|++++++-
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~----l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKL----LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHH----HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccccccccccCcchhhhHHH----HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 566665531 11223322 234788999999887 466777764 7889999999988643
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=2.3e-16 Score=153.41 Aligned_cols=348 Identities=13% Similarity=0.017 Sum_probs=203.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccCcch
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLN 91 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 91 (407)
.++|+.|+++++ ++...+.......+++|++|++++|. +. .++..+..+++|++|++.++. -..
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---------l~~ 70 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE---------LGD 70 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC---------CHH
T ss_pred Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc---------CCh
Confidence 467899999875 46555444334578999999999994 55 467777889999999995411 011
Q ss_pred hhHHHHHHhhcCCC-CccEEEeccCCCcce-----eccCCCCCccccCCceEEEEecCCCCCcCCccc----hhhccccC
Q 047829 92 STIQKCYKEMIGFR-DIWYLQLSYFPRLKE-----IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVN----LLRCLNNL 161 (407)
Q Consensus 92 ~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~-----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~l~~L 161 (407)
..+..+...+.... +|++|+++++. +.. .... + ..+++|+.|++++|... +..... .....++|
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~--l--~~~~~L~~L~Ls~n~i~-~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSST--L--RTLPTLQELHLSDNLLG-DAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHH--T--TSCTTCCEEECCSSBCH-HHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHH--H--ccCCceeEEECCCCcCc-hHHHHHHHHHHhcCCCcc
Confidence 12333444343322 79999999987 442 1111 2 34789999999998743 211111 11224579
Q ss_pred CeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCC--Ccc-ccCCCccEEeEecCCCCccccC
Q 047829 162 GWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT--GNI-IELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~--~~~-~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
++|++++|. +..... ..+...+. .+++|++|+++++. +....... ..+ ...++|+.|++++| .++....
T Consensus 145 ~~L~L~~n~-l~~~~~----~~l~~~l~-~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 216 (461)
T 1z7x_W 145 EKLQLEYCS-LSAASC----EPLASVLR-AKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNC 216 (461)
T ss_dssp CEEECTTSC-CBGGGH----HHHHHHHH-HCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHH
T ss_pred eEEECCCCC-CCHHHH----HHHHHHHh-hCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHH
Confidence 999999984 222110 00001111 24899999999875 33210000 001 13569999999987 3544321
Q ss_pred ---cccccccCCCceeecccccccchhhhcccccccccc-ccccCCcceEecccccccccccccccc-cccccCCcCcee
Q 047829 239 ---NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDE-KVTFPQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPE 313 (407)
Q Consensus 239 ---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~ 313 (407)
......+++|++|++++|..-..-+.. -... ...+++|+.|++++| .++......++ .+..+++|+.|+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-----l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAE-----LCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHH-----HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHH-----HHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEE
Confidence 112345899999999998532211000 0000 124789999999996 55542211111 123478999999
Q ss_pred eccCccccccccccc-----cccccCEEEeccCcCcccccC---chhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 314 ISECSKLQKLVPASW-----HLENLATLKVSKCHGLINLLT---LSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 314 l~~c~~l~~l~~~~~-----~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
++++.--..-+..+. ..++|++|++++|. +..... ......+++|+.|++++| .+.+..... ....+
T Consensus 291 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~---l~~~l 365 (461)
T 1z7x_W 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE---LCQGL 365 (461)
T ss_dssp CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH---HHHHH
T ss_pred CCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH---HHHHH
Confidence 998753221111111 23699999999975 443311 123345689999999999 444432000 00111
Q ss_pred e-EecccceEecCCCC
Q 047829 386 I-VFRKLEYLGLDCLP 400 (407)
Q Consensus 386 ~-~~~~L~~L~l~~cp 400 (407)
. ..++|++|++++|.
T Consensus 366 ~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCD 381 (461)
T ss_dssp TSTTCCCCEEECTTSC
T ss_pred cCCCCceEEEECCCCC
Confidence 1 15699999999984
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=2.3e-14 Score=130.21 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=62.4
Q ss_pred eeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHH-HH
Q 047829 22 FLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC-YK 99 (407)
Q Consensus 22 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~ 99 (407)
+++.++ .+++.+|.. ..++|++|+++++ .+..++ ..+..+++|++|++.++ .+..+ +.
T Consensus 15 ~~~c~~-~~l~~ip~~----~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n--------------~l~~~~~~ 74 (285)
T 1ozn_A 15 TTSCPQ-QGLQAVPVG----IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN--------------VLARIDAA 74 (285)
T ss_dssp EEECCS-SCCSSCCTT----CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--------------CCCEECTT
T ss_pred EEEcCc-CCcccCCcC----CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC--------------ccceeCHh
Confidence 444444 345555443 2467788888877 555555 34566777777777431 01111 22
Q ss_pred hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 100 EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
.+..+++|++|+++++..+....... + ..+++|+.|++.+|.... ++ ...+..+++|++|++++|
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~-~--~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPAT-F--HGLGRLHTLHLDRCGLQE-LG-PGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTT-T--TTCTTCCEEECTTSCCCC-CC-TTTTTTCTTCCEEECCSS
T ss_pred hcCCccCCCEEeCCCCCCccccCHHH-h--cCCcCCCEEECCCCcCCE-EC-HhHhhCCcCCCEEECCCC
Confidence 33445566666666654333332111 1 225566666666554332 11 123455566666666554
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.54 E-value=1.4e-13 Score=126.32 Aligned_cols=244 Identities=13% Similarity=0.079 Sum_probs=162.1
Q ss_pred cEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHh-hcCCCCccEEEeccCCCccee---c
Q 047829 47 ERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKE-MIGFRDIWYLQLSYFPRLKEI---W 122 (407)
Q Consensus 47 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~---~ 122 (407)
+.++.++. .++.+|..+ .++|++|++.+ +.+..++.. +..+++|++|+++++. +... +
T Consensus 10 ~~l~c~~~-~l~~ip~~~--~~~l~~L~L~~--------------n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 71 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELES--------------NKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCS 71 (306)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCCEEECCS--------------SCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEE
T ss_pred CEEEcCCC-CcccCCCCC--CCCCCEEECCC--------------CccCccCHhHhhccccCCEEECCCCc-cCcccCcc
Confidence 35666665 678888644 36899999964 122234443 4678999999999886 3322 1
Q ss_pred cCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc
Q 047829 123 HGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID 202 (407)
Q Consensus 123 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (407)
... ..+++|+.|++++|... .++. .+..+++|++|++++|. +..++... .+ ..+++|+.|++++
T Consensus 72 ~~~----~~~~~L~~L~Ls~n~i~-~l~~--~~~~l~~L~~L~l~~n~-l~~~~~~~-------~~-~~l~~L~~L~l~~ 135 (306)
T 2z66_A 72 QSD----FGTTSLKYLDLSFNGVI-TMSS--NFLGLEQLEHLDFQHSN-LKQMSEFS-------VF-LSLRNLIYLDISH 135 (306)
T ss_dssp HHH----HSCSCCCEEECCSCSEE-EEEE--EEETCTTCCEEECTTSE-EESSTTTT-------TT-TTCTTCCEEECTT
T ss_pred ccc----ccccccCEEECCCCccc-cChh--hcCCCCCCCEEECCCCc-ccccccch-------hh-hhccCCCEEECCC
Confidence 111 23689999999998654 3333 26789999999999864 22222111 11 1358999999988
Q ss_pred cccccccccCCCccccCCCccEEeEecCCCCcc-ccCcccccccCCCceeecccccccchhhhccccccccccccccCCc
Q 047829 203 LPKLKRFCNFTGNIIELPMFWSLTIENCPDMET-FISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQL 281 (407)
Q Consensus 203 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L 281 (407)
+. +..+. ...+..+++|+.|++.++. ++. ..+.. ...+++|++|+++++.... +. ...+..+++|
T Consensus 136 n~-l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~-~~--------~~~~~~l~~L 201 (306)
T 2z66_A 136 TH-TRVAF--NGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDLSQCQLEQ-LS--------PTAFNSLSSL 201 (306)
T ss_dssp SC-CEECS--TTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEECTTSCCCE-EC--------TTTTTTCTTC
T ss_pred Cc-CCccc--hhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEECCCCCcCC-cC--------HHHhcCCCCC
Confidence 74 32221 1234568899999998863 443 33333 4458999999998875332 21 1125668899
Q ss_pred ceEecccccccccccccccccccccCCcCceeeccCcccccccccccccc-ccCEEEeccCc
Q 047829 282 RFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLE-NLATLKVSKCH 342 (407)
Q Consensus 282 ~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~ 342 (407)
+.|+++++ .++.++...+.. +++|+.|+++++......+..+..++ +|++|++++++
T Consensus 202 ~~L~L~~N-~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 202 QVLNMSHN-NFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTS-CCSBCCSGGGTT---CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CEEECCCC-ccCccChhhccC---cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999984 566666554443 88999999999865555566677774 99999999854
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=2.8e-13 Score=123.01 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=71.5
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++|++|+++++..+..+.. ..+..+++|++|++.++ .++..++.. ...+++|++|+++++... .+..
T Consensus 80 ~~L~~L~l~~n~~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-------- 146 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDP--ATFHGLGRLHTLHLDRC-GLQELGPGL-FRGLAALQYLYLQDNALQ-ALPD-------- 146 (285)
T ss_dssp TTCCEEECCSCTTCCCCCT--TTTTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSSCCC-CCCT--------
T ss_pred cCCCEEeCCCCCCccccCH--HHhcCCcCCCEEECCCC-cCCEECHhH-hhCCcCCCEEECCCCccc-ccCH--------
Confidence 4555555554433333211 11334455555555543 233332222 223555555555554321 1100
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchh
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLST 352 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 352 (407)
..+..+++|+.|+++++ .++.++...+.. +++|+.|+++++......|..+..+++|++|+++++ .+..++ ...
T Consensus 147 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGN-RISSVPERAFRG---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALP-TEA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC-HHH
T ss_pred hHhccCCCccEEECCCC-cccccCHHHhcC---ccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCC-HHH
Confidence 01334556666666652 444444443332 556666666665432233445555666666666653 444442 223
Q ss_pred hhccccCCEEEEecc
Q 047829 353 SESLVNLERMKITDC 367 (407)
Q Consensus 353 ~~~l~~L~~L~i~~c 367 (407)
...+++|+.|+++++
T Consensus 221 ~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 221 LAPLRALQYLRLNDN 235 (285)
T ss_dssp HTTCTTCCEEECCSS
T ss_pred cccCcccCEEeccCC
Confidence 345566666666554
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=6.3e-15 Score=137.12 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=52.0
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
+.+++|+++++ .+...+..+..+++|++|++.++. + .-..++..+..+++|++|+++++. +.....
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~----------l--~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV----------I--EVSTLHGILSQCSKLQNLSLEGLR-LSDPIV 135 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE----------E--CHHHHHHHHTTBCCCSEEECTTCB-CCHHHH
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCC----------c--CHHHHHHHHhhCCCCCEEeCcCcc-cCHHHH
Confidence 66666666666 444444445566666666663310 0 011244445555666666666653 221111
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
.. + ..+++|+.|++.+|..+++......+..+++|++|++++|
T Consensus 136 ~~-l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 136 NT-L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp HH-H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred HH-H--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 00 1 1245666666666543332111122455556666666555
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=2e-14 Score=140.64 Aligned_cols=192 Identities=11% Similarity=0.011 Sum_probs=91.3
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+++|+.|+++++ .+...+... ...+++|++|++++| .+...+. +..+++|++|++.++. +..
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~--------------l~~ 94 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY--------------VQE 94 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSE--------------EEE
T ss_pred CCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCc--------------CCC
Confidence 346667777664 455444322 345667777777766 4444432 5666667776664310 000
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
+...++|++|+++++. +...+. ..+++|+.|++.+|..... ++ ..++.+++|+.|++++|. +..+.
T Consensus 95 ----l~~~~~L~~L~L~~N~-l~~~~~------~~l~~L~~L~L~~N~l~~~-~~-~~~~~l~~L~~L~Ls~N~-l~~~~ 160 (487)
T 3oja_A 95 ----LLVGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANNKITML-RD-LDEGCRSRVQYLDLKLNE-IDTVN 160 (487)
T ss_dssp ----EEECTTCCEEECCSSC-CCCEEE------CCCSSCEEEECCSSCCCSG-GG-BCGGGGSSEEEEECTTSC-CCEEE
T ss_pred ----CCCCCCcCEEECcCCc-CCCCCc------cccCCCCEEECCCCCCCCC-Cc-hhhcCCCCCCEEECCCCC-CCCcC
Confidence 1122566666666655 332222 2256666666666554332 11 224556666666666653 22221
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKL 256 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 256 (407)
... +...+++|+.|+++++. +..++. ...+++|+.|+++++ .++++++. ...+++|+.|+++++
T Consensus 161 ~~~--------l~~~l~~L~~L~Ls~N~-l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 161 FAE--------LAASSDTLEHLNLQYNF-IYDVKG----QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN 224 (487)
T ss_dssp GGG--------GGGGTTTCCEEECTTSC-CCEEEC----CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS
T ss_pred hHH--------HhhhCCcccEEecCCCc-cccccc----cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC
Confidence 100 00013566666666543 322211 113455555555543 34444332 223444555555443
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=2.3e-13 Score=120.22 Aligned_cols=104 Identities=9% Similarity=0.054 Sum_probs=58.5
Q ss_pred eEecccccccccccccccccccccCCcC-ceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhcc-ccCC
Q 047829 283 FLELSRLHKVQHLWKENAESNKVFANLK-SPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESL-VNLE 360 (407)
Q Consensus 283 ~L~L~~~~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~ 360 (407)
.|++++++.++.++...+.. +++|+ .++++++. ++.+|......++|++|++++++.+..+++ .....+ ++|+
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~---l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~ 208 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQG---LCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPS 208 (239)
T ss_dssp EEEEESCTTCCEECTTTTTT---TBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCS
T ss_pred EEECCCCcchhhcCcccccc---hhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCc
Confidence 66666644566666554443 66677 77776543 445554433336777777776544655533 233455 6777
Q ss_pred EEEEecccchhhhhccccCCcccceeEecccceEecCCCCCc
Q 047829 361 RMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSL 402 (407)
Q Consensus 361 ~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l 402 (407)
.|+++++ .+..++ .. .+++|+.|++++++.|
T Consensus 209 ~L~l~~N-~l~~l~--------~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 209 LLDVSQT-SVTALP--------SK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEECTTC-CCCCCC--------CT--TCTTCSEEECTTC---
T ss_pred EEECCCC-ccccCC--------hh--HhccCceeeccCccCC
Confidence 7777765 344443 11 4667777777776543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=6.5e-13 Score=129.85 Aligned_cols=237 Identities=16% Similarity=0.123 Sum_probs=163.0
Q ss_pred CCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcc
Q 047829 103 GFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELS 182 (407)
Q Consensus 103 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (407)
.+++|++|+++++. +...+... | ..+++|+.|++++|.... .++ +..+++|+.|++++|. +..++
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~-~--~~l~~L~~L~Ls~N~l~~-~~~---l~~l~~L~~L~Ls~N~-l~~l~------ 96 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD-L--APFTKLELLNLSSNVLYE-TLD---LESLSTLRTLDLNNNY-VQELL------ 96 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG-G--TTCTTCCEEECTTSCCEE-EEE---CTTCTTCCEEECCSSE-EEEEE------
T ss_pred cCCCccEEEeeCCc-CCCCCHHH-H--hCCCCCCEEEeeCCCCCC-Ccc---cccCCCCCEEEecCCc-CCCCC------
Confidence 44589999999986 44433222 2 347899999999987543 223 6889999999999874 44433
Q ss_pred ccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchh
Q 047829 183 AKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENL 262 (407)
Q Consensus 183 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 262 (407)
..++|+.|+++++. +..+.. ..+++|+.|++.++ .+++.++..+ ..+++|+.|+++++......
T Consensus 97 --------~~~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 97 --------VGPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp --------ECTTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTSCCCEEE
T ss_pred --------CCCCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCCCCCCcC
Confidence 13789999999864 443322 24789999999885 5666655443 45899999999887543321
Q ss_pred hhcccccccccccc-ccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 263 LVADQIQHLFDEKV-TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 263 ~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+. .+. .+++|+.|+++++ .++.++... .+++|+.|+++++. +..+|+.+..+++|+.|++++
T Consensus 161 ~~---------~l~~~l~~L~~L~Ls~N-~l~~~~~~~-----~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~- 223 (487)
T 3oja_A 161 FA---------ELAASSDTLEHLNLQYN-FIYDVKGQV-----VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN- 223 (487)
T ss_dssp GG---------GGGGGTTTCCEEECTTS-CCCEEECCC-----CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTT-
T ss_pred hH---------HHhhhCCcccEEecCCC-ccccccccc-----cCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecC-
Confidence 11 133 5789999999984 466654432 37899999999874 667777788899999999998
Q ss_pred cCcccccCchhhhccccCCEEEEecccch-hhhhccccCCcccceeEecccceEecC
Q 047829 342 HGLINLLTLSTSESLVNLERMKITDCKMM-EEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 342 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
+.+..++. ....+++|+.|++.+++-. ..++ ..+..++.|+.+++.
T Consensus 224 N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~~--------~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLR--------DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCCEECT--TCCCCTTCCEEECTTCCBCHHHHH--------HHHTTCHHHHHHHHH
T ss_pred CcCcccch--hhccCCCCCEEEcCCCCCcCcchH--------HHHHhCCCCcEEecc
Confidence 45666532 2456789999999988543 2232 233445666666553
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=9.1e-13 Score=116.36 Aligned_cols=84 Identities=13% Similarity=0.021 Sum_probs=50.8
Q ss_pred ccccCCcc-eEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccc-cccCEEEeccCcCcccccCch
Q 047829 275 KVTFPQLR-FLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHL-ENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 275 ~~~l~~L~-~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~~~~~~ 351 (407)
+..+++|+ .|++++ ..++.++...+. .++|+.|++++++.++.+++ .+..+ ++|++|++++ +.+..+++.
T Consensus 151 ~~~l~~L~~~L~l~~-n~l~~i~~~~~~----~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~- 223 (239)
T 2xwt_C 151 FQGLCNETLTLKLYN-NGFTSVQGYAFN----GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK- 223 (239)
T ss_dssp TTTTBSSEEEEECCS-CCCCEECTTTTT----TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-
T ss_pred ccchhcceeEEEcCC-CCCcccCHhhcC----CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-
Confidence 33456666 677666 345556554433 35677777777655666643 34556 7788888877 456555322
Q ss_pred hhhccccCCEEEEeccc
Q 047829 352 TSESLVNLERMKITDCK 368 (407)
Q Consensus 352 ~~~~l~~L~~L~i~~c~ 368 (407)
.+++|+.|.+.++.
T Consensus 224 ---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 ---GLEHLKELIARNTW 237 (239)
T ss_dssp ---TCTTCSEEECTTC-
T ss_pred ---HhccCceeeccCcc
Confidence 45677777777664
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=3.5e-12 Score=119.36 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=139.7
Q ss_pred EeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHH-hhcCCCCccEEEeccCCCcceeccCCCC
Q 047829 49 VSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK-EMIGFRDIWYLQLSYFPRLKEIWHGQAL 127 (407)
Q Consensus 49 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 127 (407)
++-++. .++.+|..+ .+++++|++.+ +.++.++. .+.++++|++|+++++.-++..+... |
T Consensus 14 v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~--------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f 75 (350)
T 4ay9_X 14 FLCQES-KVTEIPSDL--PRNAIELRFVL--------------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-F 75 (350)
T ss_dssp EEEEST-TCCSCCTTC--CTTCSEEEEES--------------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-B
T ss_pred EEecCC-CCCccCcCc--CCCCCEEEccC--------------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-h
Confidence 343433 555666543 24566666643 22223333 23556667777777666444433322 3
Q ss_pred CccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccc
Q 047829 128 PVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLK 207 (407)
Q Consensus 128 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 207 (407)
..+++++++.+.++..+..+++ +.+..+++|+.|++++|. +..++..... ...++..|.+.++..+.
T Consensus 76 --~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~-l~~~~~~~~~---------~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 76 --SNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTG-IKHLPDVHKI---------HSLQKVLLDIQDNINIH 142 (350)
T ss_dssp --CSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEEC-CSSCCCCTTC---------CBSSCEEEEEESCTTCC
T ss_pred --hcchhhhhhhcccCCcccccCc-hhhhhccccccccccccc-cccCCchhhc---------ccchhhhhhhccccccc
Confidence 2356777766665556655543 446788899999998763 3333321111 12456667776666666
Q ss_pred ccccCCCccccC-CCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEec
Q 047829 208 RFCNFTGNIIEL-PMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLEL 286 (407)
Q Consensus 208 ~i~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 286 (407)
.++... +... ..++.|++.+ ++++.+++..+ ...+|+++.+.++..++.+... .+..+++|+.|++
T Consensus 143 ~l~~~~--f~~~~~~l~~L~L~~-N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~--------~f~~l~~L~~LdL 209 (350)
T 4ay9_X 143 TIERNS--FVGLSFESVILWLNK-NGIQEIHNSAF--NGTQLDELNLSDNNNLEELPND--------VFHGASGPVILDI 209 (350)
T ss_dssp EECTTS--STTSBSSCEEEECCS-SCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTT--------TTTTEECCSEEEC
T ss_pred cccccc--hhhcchhhhhhcccc-ccccCCChhhc--cccchhHHhhccCCcccCCCHH--------HhccCcccchhhc
Confidence 554322 2222 3577777766 45666655432 2456777777776666654322 1456778888888
Q ss_pred ccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEecc
Q 047829 287 SRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSK 340 (407)
Q Consensus 287 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~ 340 (407)
++ +.++.+|... +.+|+.|.+.++.+++.+|. +..+++|+.+++.+
T Consensus 210 s~-N~l~~lp~~~------~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SR-TRIHSLPSYG------LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TT-SCCCCCCSSS------CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CC-CCcCccChhh------hccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 87 4677777653 45677777777777777774 66778888887754
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=1.2e-13 Score=128.48 Aligned_cols=235 Identities=13% Similarity=0.060 Sum_probs=138.5
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
+++++|+++++. +...+... ..+++|+.|++++|..... .....+..+++|++|++++|.-....+.
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~------- 136 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSVIEVS-TLHGILSQCSKLQNLSLEGLRLSDPIVN------- 136 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCEECHH-HHHHHHTTBCCCSEEECTTCBCCHHHHH-------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCCcCHH-HHHHHHhhCCCCCEEeCcCcccCHHHHH-------
Confidence 456666666543 22222222 3368888888888763221 1123467788888888888742111111
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccC-CCceeeccccc-ccch-
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHM-TADNKEPQKLK-SEEN- 261 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~-~l~~- 261 (407)
.+. .+++|++|+++++..+.... ....+..+++|++|++.+|..++..........++ +|++|++++|. .+.+
T Consensus 137 --~l~-~~~~L~~L~L~~~~~l~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 137 --TLA-KNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp --HHT-TCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred --HHh-cCCCCCEEECCCCCCCCHHH-HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 111 25888888888876554310 01124467889999998886776543223355688 99999998885 3431
Q ss_pred hhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc-ccccccccccCEEEecc
Q 047829 262 LLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL-VPASWHLENLATLKVSK 340 (407)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~ 340 (407)
.++. ....+++|+.|++++|..++......+. .+++|+.|++++|..+... ...+..+++|++|++++
T Consensus 213 ~l~~--------~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 213 DLST--------LVRRCPNLVHLDLSDSVMLKNDCFQEFF---QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp HHHH--------HHHHCTTCSEEECTTCTTCCGGGGGGGG---GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred HHHH--------HHhhCCCCCEEeCCCCCcCCHHHHHHHh---CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 1111 1446889999999987655443333333 3789999999998743321 12456789999999998
Q ss_pred CcCcccccCchhhhcc-ccCCEEEEecccchhhhh
Q 047829 341 CHGLINLLTLSTSESL-VNLERMKITDCKMMEEII 374 (407)
Q Consensus 341 c~~l~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~ 374 (407)
| +.+. ....+ ..+..|++.++ .+..+.
T Consensus 282 ~--i~~~----~~~~l~~~l~~L~l~~n-~l~~~~ 309 (336)
T 2ast_B 282 I--VPDG----TLQLLKEALPHLQINCS-HFTTIA 309 (336)
T ss_dssp S--SCTT----CHHHHHHHSTTSEESCC-CSCCTT
T ss_pred c--cCHH----HHHHHHhhCcceEEecc-cCcccc
Confidence 7 3332 12222 24556666544 555543
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=1.2e-12 Score=122.40 Aligned_cols=234 Identities=20% Similarity=0.179 Sum_probs=163.2
Q ss_pred HHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 95 QKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 95 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
+.+|..+ .+++++|+++++. ++.++.+. | ..+++|+.|++++|...+.++ .+.+.++++++++.+.+++.+..
T Consensus 22 t~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 22 TEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp CSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCE
T ss_pred CccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccc
Confidence 3455444 3679999999876 66655443 4 347899999999988766443 34567888888777766667776
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
++... + ..+++|+.|++.++ .+..+... .+....++..+++.++.++..++...+......++.|+++
T Consensus 95 l~~~~--------f-~~l~~L~~L~l~~n-~l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 95 INPEA--------F-QNLPNLQYLLISNT-GIKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp ECTTS--------B-CCCTTCCEEEEEEE-CCSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred cCchh--------h-hhcccccccccccc-ccccCCch--hhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 64311 1 13588999999875 34443321 1234457788888888888888766554444568888887
Q ss_pred cccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccC
Q 047829 255 KLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLA 334 (407)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 334 (407)
++.. +.+... .....+|+.+.+.+++.++.++.+.+.. +++|+.|+++++ +++.+|. ..+.+|+
T Consensus 163 ~N~i-~~i~~~---------~f~~~~L~~l~l~~~n~l~~i~~~~f~~---l~~L~~LdLs~N-~l~~lp~--~~~~~L~ 226 (350)
T 4ay9_X 163 KNGI-QEIHNS---------AFNGTQLDELNLSDNNNLEELPNDVFHG---ASGPVILDISRT-RIHSLPS--YGLENLK 226 (350)
T ss_dssp SSCC-CEECTT---------SSTTEEEEEEECTTCTTCCCCCTTTTTT---EECCSEEECTTS-CCCCCCS--SSCTTCC
T ss_pred cccc-cCCChh---------hccccchhHHhhccCCcccCCCHHHhcc---CcccchhhcCCC-CcCccCh--hhhccch
Confidence 7542 222111 3345689999999888899998877665 889999999986 5778875 4578899
Q ss_pred EEEeccCcCcccccCchhhhccccCCEEEEec
Q 047829 335 TLKVSKCHGLINLLTLSTSESLVNLERMKITD 366 (407)
Q Consensus 335 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 366 (407)
+|.+.+++.++.+++ ...+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 999988888888853 45688899888865
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.38 E-value=1.2e-11 Score=112.57 Aligned_cols=200 Identities=13% Similarity=0.011 Sum_probs=135.4
Q ss_pred cCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCc
Q 047829 102 IGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEEL 181 (407)
Q Consensus 102 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 181 (407)
..++++++++++++. ++.++. ...++++.|++++|.... + ....+..+++|+.|++++|. ++.++..
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~------~~~~~l~~L~L~~N~l~~-~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~--- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPP------DLPKDTTILHLSENLLYT-F-SLATLMPYTRLTQLNLDRAE-LTKLQVD--- 73 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCS------CCCTTCCEEECTTSCCSE-E-EGGGGTTCTTCCEEECTTSC-CCEEECC---
T ss_pred cccCCccEEECCCCC-CCcCCC------CCCCCCCEEEcCCCcCCc-c-CHHHhhcCCCCCEEECCCCc-cCcccCC---
Confidence 345667777776654 443332 334788899998876543 2 23457888999999998864 4444321
Q ss_pred cccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccch
Q 047829 182 SAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEEN 261 (407)
Q Consensus 182 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 261 (407)
..+++|+.|+++++ .+..++. .+..+++|+.|+++++ +++.+++.. +..+++|++|+++++..- .
T Consensus 74 --------~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~l~~N-~l~~l~~~~-~~~l~~L~~L~L~~N~l~-~ 138 (290)
T 1p9a_G 74 --------GTLPVLGTLDLSHN-QLQSLPL---LGQTLPALTVLDVSFN-RLTSLPLGA-LRGLGELQELYLKGNELK-T 138 (290)
T ss_dssp --------SCCTTCCEEECCSS-CCSSCCC---CTTTCTTCCEEECCSS-CCCCCCSST-TTTCTTCCEEECTTSCCC-C
T ss_pred --------CCCCcCCEEECCCC-cCCcCch---hhccCCCCCEEECCCC-cCcccCHHH-HcCCCCCCEEECCCCCCC-c
Confidence 13588999999876 3444432 2456788999999874 577766544 345888999999877432 2
Q ss_pred hhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 262 LLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+.+ ..+..+++|+.|++++ +.++.++...+.. +++|+.|+++++ .++.+|..+...++|+.++++++
T Consensus 139 ~~~--------~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~---l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 139 LPP--------GLLTPTPKLEKLSLAN-NNLTELPAGLLNG---LENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCT--------TTTTTCTTCCEEECTT-SCCSCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCh--------hhcccccCCCEEECCC-CcCCccCHHHhcC---cCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 211 1144578899999988 4677777765544 788999999876 46778887778888999999874
Q ss_pred c
Q 047829 342 H 342 (407)
Q Consensus 342 ~ 342 (407)
+
T Consensus 206 p 206 (290)
T 1p9a_G 206 P 206 (290)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=5.4e-12 Score=115.82 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=27.5
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
|++|+.|+++++ +++.++. ...+++|++|++++| .+..++. +..+++|++|++.
T Consensus 40 l~~L~~L~l~~~-~i~~l~~---~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELS 93 (308)
T ss_dssp HHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECC
T ss_pred cCCcCEEEeeCC-CccCchh---hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEcc
Confidence 455555555554 3443321 234555555655555 4444443 4555555555554
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=6.4e-12 Score=115.33 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=141.0
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++|+.|.+.+|... .++ .+..+++|+.|++++|. +..++.+ . .+++|+.|+++++. +..+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~---~~~~l~~L~~L~L~~n~-i~~~~~~----------~-~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE---GVQYLNNLIGLELKDNQ-ITDLAPL----------K-NLTKITELELSGNP-LKNV 100 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT---TGGGCTTCCEEECCSSC-CCCCGGG----------T-TCCSCCEEECCSCC-CSCC
T ss_pred HHcCCcCEEEeeCCCcc-Cch---hhhccCCCCEEEccCCc-CCCChhH----------c-cCCCCCEEEccCCc-CCCc
Confidence 45889999999998553 333 37889999999999874 4443321 1 36899999999874 5543
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
. .+..+++|+.|+++++ .++.+++ ...+++|++|+++++..- .+ .....+++|+.|+++++
T Consensus 101 ~----~~~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~l~-~~----------~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 101 S----AIAGLQSIKTLDLTST-QITDVTP---LAGLSNLQVLYLDLNQIT-NI----------SPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp G----GGTTCTTCCEEECTTS-CCCCCGG---GTTCTTCCEEECCSSCCC-CC----------GGGGGCTTCCEEECCSS
T ss_pred h----hhcCCCCCCEEECCCC-CCCCchh---hcCCCCCCEEECCCCccC-cC----------ccccCCCCccEEEccCC
Confidence 2 3567899999999986 4666543 456899999999887532 11 12567899999999985
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.+..++. +. .+++|+.|+++++. +..+++ +..+++|++|++++| .+..+++ ...+++|+.|++.+++
T Consensus 162 -~l~~~~~--l~---~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 162 -QVSDLTP--LA---NLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -CCCCCGG--GT---TCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred -cCCCChh--hc---CCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence 5565554 32 38899999999874 566654 778999999999985 5666632 4678999999999984
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.34 E-value=4.6e-13 Score=123.29 Aligned_cols=115 Identities=13% Similarity=-0.014 Sum_probs=56.8
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
..++|++|+++++ .+ .+|..+... |++|++.+..- .. ...+..+..-......+++|++|+++++.--...
T Consensus 41 ~~~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l----~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 41 GGRSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTV----RA-ARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEE----EE-EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred cCCCceeEeeccc-cc-ccHHHHHHH--Hhhcccccccc----cC-CCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 4577788888877 34 666554443 66666643110 00 0011111111112235567777777776521121
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhcc-----ccCCeeEEcccc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCL-----NNLGWLEVRNCD 170 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~ 170 (407)
+... + ...+++|+.|++++|..... + ..+..+ ++|++|++++|.
T Consensus 112 ~~~~-~-~~~l~~L~~L~Ls~N~l~~~-~--~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 112 PPPL-L-EATGPDLNILNLRNVSWATR-D--AWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp CCCS-S-SCCSCCCSEEEEESCBCSSS-S--SHHHHHHTTCCTTCCEEEEESCS
T ss_pred HHHH-H-HhcCCCccEEEccCCCCcch-h--HHHHHHHHhhcCCCcEEEeeCCC
Confidence 1111 1 02366777777777654432 2 224444 677777777653
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.32 E-value=3e-11 Score=108.63 Aligned_cols=200 Identities=17% Similarity=0.118 Sum_probs=135.1
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.+.+.+++.++.. +.+|.. + .++++.|+++++. +..++.. .+ ..+++|++|+++++ .+..++..
T Consensus 16 ~~~~~l~~~~~~l-~~ip~~--~--~~~l~~L~l~~n~-l~~~~~~--------~~-~~l~~L~~L~l~~n-~l~~i~~~ 79 (270)
T 2o6q_A 16 NNKNSVDCSSKKL-TAIPSN--I--PADTKKLDLQSNK-LSSLPSK--------AF-HRLTKLRLLYLNDN-KLQTLPAG 79 (270)
T ss_dssp TTTTEEECTTSCC-SSCCSC--C--CTTCSEEECCSSC-CSCCCTT--------SS-SSCTTCCEEECCSS-CCSCCCTT
T ss_pred CCCCEEEccCCCC-CccCCC--C--CCCCCEEECcCCC-CCeeCHH--------Hh-cCCCCCCEEECCCC-ccCeeChh
Confidence 4678888887554 444432 2 2679999999874 4433211 11 13589999999876 34444322
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
.+..+++|++|++.++ .++.+++.. +..+++|++|+++++.... +.+ ..+..+++|+.|+++++ .+
T Consensus 80 --~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--------~~~~~l~~L~~L~Ls~n-~l 145 (270)
T 2o6q_A 80 --IFKELKNLETLWVTDN-KLQALPIGV-FDQLVNLAELRLDRNQLKS-LPP--------RVFDSLTKLTYLSLGYN-EL 145 (270)
T ss_dssp --TTSSCTTCCEEECCSS-CCCCCCTTT-TTTCSSCCEEECCSSCCCC-CCT--------TTTTTCTTCCEEECCSS-CC
T ss_pred --hhcCCCCCCEEECCCC-cCCcCCHhH-cccccCCCEEECCCCccCe-eCH--------HHhCcCcCCCEEECCCC-cC
Confidence 2456889999999885 466665533 4458899999998865322 111 12456889999999984 67
Q ss_pred ccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+.++...+.. +++|+.|+++++. +..+++ .+..+++|++|+++++ .+..+++ .....+++|+.|++.+++
T Consensus 146 ~~~~~~~~~~---l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 QSLPKGVFDK---LTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccC---CcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence 7777665544 8899999998874 555554 3677899999999885 6666643 345678899999997763
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.32 E-value=3.3e-11 Score=108.72 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=36.7
Q ss_pred cccCCcceEecccccccccccccccccccccCCcC----ceeeccCccccccccccccccccCEEEeccCcCcccccCch
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLK----SPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 351 (407)
..+++|+.|+++++ .++.++...+.. +++|+ .++++++. +..+++......+|++|+++++ .+..++ ..
T Consensus 146 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~---l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~ 218 (276)
T 2z62_A 146 SNLTNLEHLDLSSN-KIQSIYCTDLRV---LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVP-DG 218 (276)
T ss_dssp GGCTTCCEEECCSS-CCCEECGGGGHH---HHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCC-TT
T ss_pred ccCCCCCEEECCCC-CCCcCCHHHhhh---hhhccccceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecC-Hh
Confidence 33455555555552 333443333322 33333 44554432 3344433333345566666553 344442 22
Q ss_pred hhhccccCCEEEEe
Q 047829 352 TSESLVNLERMKIT 365 (407)
Q Consensus 352 ~~~~l~~L~~L~i~ 365 (407)
....+++|+.|+++
T Consensus 219 ~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 219 IFDRLTSLQKIWLH 232 (276)
T ss_dssp TTTTCCSCCEEECC
T ss_pred HhcccccccEEEcc
Confidence 33445556666555
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.32 E-value=1.6e-11 Score=111.68 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=134.0
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++++.+.+.++. ++.++.. + .++++.|++++|. +..+.... +. .+++|+.|+++++. +..+
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~~--~--~~~l~~L~L~~N~-l~~~~~~~--------~~-~l~~L~~L~L~~n~-l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPPD--L--PKDTTILHLSENL-LYTFSLAT--------LM-PYTRLTQLNLDRAE-LTKL 70 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCSC--C--CTTCCEEECTTSC-CSEEEGGG--------GT-TCTTCCEEECTTSC-CCEE
T ss_pred cccCCccEEECCCCC-CCcCCCC--C--CCCCCEEEcCCCc-CCccCHHH--------hh-cCCCCCEEECCCCc-cCcc
Confidence 347889999998754 4455542 2 3689999999875 44433111 11 35899999998763 5554
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
... ..+++|+.|+++++ .++.++. ....+++|+.|+++++..- .+.+ ..+..+++|+.|++++
T Consensus 71 ~~~----~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~l~~N~l~-~l~~--------~~~~~l~~L~~L~L~~- 133 (290)
T 1p9a_G 71 QVD----GTLPVLGTLDLSHN-QLQSLPL--LGQTLPALTVLDVSFNRLT-SLPL--------GALRGLGELQELYLKG- 133 (290)
T ss_dssp ECC----SCCTTCCEEECCSS-CCSSCCC--CTTTCTTCCEEECCSSCCC-CCCS--------STTTTCTTCCEEECTT-
T ss_pred cCC----CCCCcCCEEECCCC-cCCcCch--hhccCCCCCEEECCCCcCc-ccCH--------HHHcCCCCCCEEECCC-
Confidence 332 46889999999875 5665543 2345889999999877532 2211 1255678999999998
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
+.++.++...+.. +++|+.|+++++. ++.+|.. +..+++|++|++++ +.+..++. . ....+.|+.+++.++
T Consensus 134 N~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~-~-~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 134 NELKTLPPGLLTP---TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIPK-G-FFGSHLLPFAFLHGN 205 (290)
T ss_dssp SCCCCCCTTTTTT---CTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCCT-T-TTTTCCCSEEECCSC
T ss_pred CCCCccChhhccc---ccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCC-CcCCccCh-h-hcccccCCeEEeCCC
Confidence 4677777665544 7889999998864 6667654 36688999999987 56666632 3 334668899988764
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.32 E-value=4.9e-12 Score=116.38 Aligned_cols=252 Identities=14% Similarity=0.058 Sum_probs=135.8
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccc--ccccccc-------CCCCcceeEEEeecccccccc
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMK--TFSQGIL-------STPKLHKVQVIVKEEGELYHR 86 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~--~lp~~~~-------~l~~L~~L~l~~~~~~~~~~~ 86 (407)
..++|+.|+++++. + ..|... . ..|++|+++++ .+. .+|..+. .+++|++|++.++.-.
T Consensus 41 ~~~~L~~l~l~~n~-l-~~p~~~--~--~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 108 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-E-ADLGQF--T--DIIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVT----- 108 (312)
T ss_dssp EEEECTTHHHHCCT-T-CCCHHH--H--HHHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-----
T ss_pred cCCCceeEeecccc-c-ccHHHH--H--HHHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-----
Confidence 35667777777753 3 444321 1 22778888877 443 3554444 6888888888762211
Q ss_pred cCcchhhHHHHHHhh--cCCCCccEEEeccCCCcceeccCC-CCCccccCCceEEEEecCCCCCcCCccchhhccccCCe
Q 047829 87 EGNLNSTIQKCYKEM--IGFRDIWYLQLSYFPRLKEIWHGQ-ALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGW 163 (407)
Q Consensus 87 ~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 163 (407)
+.+|..+ ..+++|++|+++++. +...+... .++...+++|+.|++++|.... ++ ...+..+++|++
T Consensus 109 --------~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~-~~~~~~l~~L~~ 177 (312)
T 1wwl_A 109 --------GTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FS-CEQVRVFPALST 177 (312)
T ss_dssp --------SCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CC-TTTCCCCSSCCE
T ss_pred --------chhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-ch-HHHhccCCCCCE
Confidence 0123333 567888999988876 33221100 0000112889999999887644 33 234778899999
Q ss_pred eEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCC-CccccCCCccEEeEecCCCCccccCcccc
Q 047829 164 LEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT-GNIIELPMFWSLTIENCPDMETFISNSTS 242 (407)
Q Consensus 164 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 242 (407)
|++++|.-...++... ......+++|++|+++++. +..+.... ..+..+++|+.|+++++ .+++..+...
T Consensus 178 L~Ls~N~l~~~~~~~~------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~- 248 (312)
T 1wwl_A 178 LDLSDNPELGERGLIS------ALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPS- 248 (312)
T ss_dssp EECCSCTTCHHHHHHH------HSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSC-
T ss_pred EECCCCCcCcchHHHH------HHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhh-
Confidence 9999875322211000 0000134677777777652 22111000 01123445555555443 2333221111
Q ss_pred cccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccc
Q 047829 243 ILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQK 322 (407)
Q Consensus 243 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~ 322 (407)
...+++|+.|+++++ .++.+|... .++|+.|+++++ .++.
T Consensus 249 --------------------------------~~~l~~L~~L~Ls~N-~l~~ip~~~------~~~L~~L~Ls~N-~l~~ 288 (312)
T 1wwl_A 249 --------------------------------CDWPSQLNSLNLSFT-GLKQVPKGL------PAKLSVLDLSYN-RLDR 288 (312)
T ss_dssp --------------------------------CCCCTTCCEEECTTS-CCSSCCSSC------CSEEEEEECCSS-CCCS
T ss_pred --------------------------------hhhcCCCCEEECCCC-ccChhhhhc------cCCceEEECCCC-CCCC
Confidence 223456666666663 444555431 157777787775 3555
Q ss_pred cccccccccccCEEEecc
Q 047829 323 LVPASWHLENLATLKVSK 340 (407)
Q Consensus 323 l~~~~~~~~~L~~L~l~~ 340 (407)
+|. +..+++|++|++++
T Consensus 289 ~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 289 NPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CCC-TTTSCEEEEEECTT
T ss_pred Chh-HhhCCCCCEEeccC
Confidence 555 67778888888877
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.30 E-value=8.7e-11 Score=105.59 Aligned_cols=180 Identities=15% Similarity=0.073 Sum_probs=111.0
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
.++++.|+++++... .++ ...+..+++|++|++++|. +..++.. ....+++|++|++.++. +..+..
T Consensus 36 ~~~l~~L~l~~n~l~-~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~---------~~~~l~~L~~L~l~~n~-l~~~~~ 102 (270)
T 2o6q_A 36 PADTKKLDLQSNKLS-SLP-SKAFHRLTKLRLLYLNDNK-LQTLPAG---------IFKELKNLETLWVTDNK-LQALPI 102 (270)
T ss_dssp CTTCSEEECCSSCCS-CCC-TTSSSSCTTCCEEECCSSC-CSCCCTT---------TTSSCTTCCEEECCSSC-CCCCCT
T ss_pred CCCCCEEECcCCCCC-eeC-HHHhcCCCCCCEEECCCCc-cCeeChh---------hhcCCCCCCEEECCCCc-CCcCCH
Confidence 356777777776543 332 2335677777888777653 3332210 11124677777777653 333321
Q ss_pred CCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccc
Q 047829 212 FTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHK 291 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 291 (407)
..+..+++|+.|++.++ .++.+++.. +..+++|++|+++++.. ..+.. ..+..+++|+.|+++++ .
T Consensus 103 --~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l-~~~~~--------~~~~~l~~L~~L~L~~n-~ 168 (270)
T 2o6q_A 103 --GVFDQLVNLAELRLDRN-QLKSLPPRV-FDSLTKLTYLSLGYNEL-QSLPK--------GVFDKLTSLKELRLYNN-Q 168 (270)
T ss_dssp --TTTTTCSSCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCC-CCCCT--------TTTTTCTTCCEEECCSS-C
T ss_pred --hHcccccCCCEEECCCC-ccCeeCHHH-hCcCcCCCEEECCCCcC-CccCH--------hHccCCcccceeEecCC-c
Confidence 12445677888888764 455555433 34578888888877642 22111 11456788899998874 5
Q ss_pred cccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 292 VQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 292 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
++.++...+.. +++|+.|+++++ .++.+|+ .+..+++|+.|++++++
T Consensus 169 l~~~~~~~~~~---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 LKRVPEGAFDK---LTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCTTTTTT---CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEeChhHhcc---CCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 66666655544 788999999887 4566665 35678899999998754
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.25 E-value=7.4e-11 Score=106.19 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=104.4
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++|+.|.+.++... .+. .+..+++|++|++++|. +..+..+ . .+++|++|+++++ .+..+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~---~l~~l~~L~~L~l~~n~-l~~~~~l----------~-~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ---GIQYLPNVRYLALGGNK-LHDISAL----------K-ELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT---TGGGCTTCCEEECTTSC-CCCCGGG----------T-TCTTCCEEECTTS-CCCCC
T ss_pred ccccceeeeeeCCCCcc-ccc---ccccCCCCcEEECCCCC-CCCchhh----------c-CCCCCCEEECCCC-ccCcc
Confidence 34788888888876543 322 26788888888888864 3332211 1 3578888888876 34433
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
.. ..+..+++|+.|++.++ .++.+++.. ...+++|++|++++|. +..+.+. ....+++|+.|+++++
T Consensus 101 ~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~--------~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 101 PN--GVFDKLTNLKELVLVEN-QLQSLPDGV-FDKLTNLTYLNLAHNQ-LQSLPKG--------VFDKLTNLTELDLSYN 167 (272)
T ss_dssp CT--TTTTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT--------TTTTCTTCCEEECCSS
T ss_pred Ch--hHhcCCcCCCEEECCCC-cCCccCHHH-hccCCCCCEEECCCCc-cCccCHH--------HhccCccCCEEECCCC
Confidence 22 12446778888888775 455554432 3346777777777663 2222111 1345667777777774
Q ss_pred cccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccC
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKC 341 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 341 (407)
.++.++...+.. +++|+.|+++++. +..+++ .+..+++|++|+++++
T Consensus 168 -~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 168 -QLQSLPEGVFDK---LTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -CCCCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred -CcCccCHHHhcC---CccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 455555543333 6677777777654 333433 3456677777777664
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=1.6e-10 Score=104.08 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=93.3
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
+++|+.|++++|... .+++ ..+..+++|+.|++++|. +..+... .+. .+++|++|++.++. +..+..
T Consensus 51 l~~L~~L~l~~n~l~-~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~--------~~~-~l~~L~~L~l~~n~-l~~~~~ 117 (276)
T 2z62_A 51 FPELQVLDLSRCEIQ-TIED-GAYQSLSHLSTLILTGNP-IQSLALG--------AFS-GLSSLQKLVAVETN-LASLEN 117 (276)
T ss_dssp CTTCSEEECTTCCCC-EECT-TTTTTCTTCCEEECTTCC-CCEECTT--------TTT-TCTTCCEEECTTSC-CCCSTT
T ss_pred ccCCcEEECCCCcCC-ccCH-HHccCCcCCCEEECCCCc-cCccChh--------hhc-CCccccEEECCCCC-ccccCc
Confidence 455555555555332 2221 224555566666665543 2222110 001 23566666665442 222111
Q ss_pred CCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcc----eEecc
Q 047829 212 FTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLR----FLELS 287 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~----~L~L~ 287 (407)
..+..+++|+.|+++++ .++.+........+++|++|+++++.... +.. .....+++|+ .|+++
T Consensus 118 --~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~--------~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 118 --FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYC--------TDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp --CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECG--------GGGHHHHTCTTCCEEEECC
T ss_pred --hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCc-CCH--------HHhhhhhhccccceeeecC
Confidence 11345566777776654 34433211223446777777777664321 110 0123334444 77887
Q ss_pred cccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccC
Q 047829 288 RLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKC 341 (407)
Q Consensus 288 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 341 (407)
+ +.+..++...+. ..+|+.|+++++. ++.+|.. +..+++|++|+++++
T Consensus 186 ~-n~l~~~~~~~~~----~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 186 L-NPMNFIQPGAFK----EIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp S-SCCCEECTTSSC----SCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred C-CcccccCccccC----CCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 7 456666665443 4579999998875 6666654 467899999999874
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=5.1e-11 Score=109.41 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=43.8
Q ss_pred cCCCccEEeEecCCCCccccCccccc--ccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSI--LHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
.+++|++|+++++ .++...|..+.. .+++|++|+++++..- .++. ..+++|+.|++++ +.++.+
T Consensus 222 ~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-----------~~~~~L~~L~Ls~-N~l~~~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-----------GLPAKLRVLDLSS-NRLNRA 287 (310)
T ss_dssp HTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-----------CCCSCCSCEECCS-CCCCSC
T ss_pred cCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-----------hhcCCCCEEECCC-CcCCCC
Confidence 4466666666553 344442222111 1357777777665432 2211 1136788888877 345554
Q ss_pred cccccccccccCCcCceeeccCc
Q 047829 296 WKENAESNKVFANLKSPEISECS 318 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~ 318 (407)
+. +. .+++|+.|++++++
T Consensus 288 ~~--~~---~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQ--PD---ELPEVDNLTLDGNP 305 (310)
T ss_dssp CC--TT---SCCCCSCEECSSTT
T ss_pred ch--hh---hCCCccEEECcCCC
Confidence 33 12 26788888888764
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=4.8e-12 Score=120.00 Aligned_cols=137 Identities=17% Similarity=0.138 Sum_probs=81.9
Q ss_pred CCccEEeEecCCCCccccCc---ccccccCCCceeecccccccchhhhccccccccc-cccccCCcceEeccccccc---
Q 047829 220 PMFWSLTIENCPDMETFISN---STSILHMTADNKEPQKLKSEENLLVADQIQHLFD-EKVTFPQLRFLELSRLHKV--- 292 (407)
Q Consensus 220 ~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l--- 292 (407)
++|++|++++|. ++..... .....+++|++|.+++|..-..-+ ....+ .+..+++|+.|+++++. +
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~-----~~l~~~~l~~~~~L~~L~Ls~n~-l~~~ 231 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-----EHLLLEGLAYCQELKVLDLQDNT-FTHL 231 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-----HHHHHTTGGGCTTCCEEECCSSC-CHHH
T ss_pred CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH-----HHHHHHHhhcCCCccEEECcCCC-CCcH
Confidence 789999998864 4322111 123457889999988875321100 00011 25567888888888853 4
Q ss_pred --ccccccccccccccCCcCceeeccCccccc----ccccc--ccccccCEEEeccCcCccc----ccCchhhhccccCC
Q 047829 293 --QHLWKENAESNKVFANLKSPEISECSKLQK----LVPAS--WHLENLATLKVSKCHGLIN----LLTLSTSESLVNLE 360 (407)
Q Consensus 293 --~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~----l~~~~--~~~~~L~~L~l~~c~~l~~----~~~~~~~~~l~~L~ 360 (407)
..++.. +..+++|+.|++++|..-.. ++..+ +.+++|++|++++| .+.. ..+..+..++++|+
T Consensus 232 g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 232 GSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHHHH----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHH----HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCce
Confidence 233332 23378888888888763222 34444 23788888888875 4544 12333335578888
Q ss_pred EEEEeccc
Q 047829 361 RMKITDCK 368 (407)
Q Consensus 361 ~L~i~~c~ 368 (407)
+|++++|+
T Consensus 307 ~L~l~~N~ 314 (386)
T 2ca6_A 307 FLELNGNR 314 (386)
T ss_dssp EEECTTSB
T ss_pred EEEccCCc
Confidence 88888874
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=6.9e-13 Score=125.86 Aligned_cols=271 Identities=12% Similarity=0.052 Sum_probs=137.0
Q ss_pred cccCCccEEeecCCCcccc-----ccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccC
Q 047829 41 LEFPSLERVSVTFCPDMKT-----FSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYF 115 (407)
Q Consensus 41 ~~~~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 115 (407)
..+++|++|++++| .+.. ++..+..+++|++|++.++... ...+..+..+..+...+..+++|++|+++++
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~---~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTG---RVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTT---SCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccC---ccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 46788999999998 4442 4444667889999988642111 0112234556667677777888888888877
Q ss_pred CCcce-----eccCCCCCccccCCceEEEEecCCCCCcCC--ccchhhcc---------ccCCeeEEccccccceeeccC
Q 047829 116 PRLKE-----IWHGQALPVSFFNNLCKLVVDDCTNMSSAI--PVNLLRCL---------NNLGWLEVRNCDSLEEVFHLE 179 (407)
Q Consensus 116 ~~l~~-----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~l---------~~L~~L~l~~~~~~~~~~~~~ 179 (407)
. +.. .+... ..+++|+.|++++|......+ ....+..+ ++|++|++++|. +...
T Consensus 105 ~-l~~~~~~~l~~~l----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~---- 174 (386)
T 2ca6_A 105 A-FGPTAQEPLIDFL----SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG---- 174 (386)
T ss_dssp C-CCTTTHHHHHHHH----HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG----
T ss_pred c-CCHHHHHHHHHHH----HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcH----
Confidence 6 221 11011 235677777777665421100 00112222 566666666543 1100
Q ss_pred CccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcc-----ccCcccccccCCCceeecc
Q 047829 180 ELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMET-----FISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l~ 254 (407)
.+......+..+++|+.|++++| .++. +.+. ....+++|++|+++
T Consensus 175 ----------------------------~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~-~l~~~~~L~~L~Ls 224 (386)
T 2ca6_A 175 ----------------------------SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLE-GLAYCQELKVLDLQ 224 (386)
T ss_dssp ----------------------------GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHT-TGGGCTTCCEEECC
T ss_pred ----------------------------HHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHH-HhhcCCCccEEECc
Confidence 00000001223445555555544 2221 1110 12235666666666
Q ss_pred ccccc----chhhhccccccccccccccCCcceEecccccccccccccccc-cc--cccCCcCceeeccCcccc----cc
Q 047829 255 KLKSE----ENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAE-SN--KVFANLKSPEISECSKLQ----KL 323 (407)
Q Consensus 255 ~~~~l----~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~--~~~~~L~~L~l~~c~~l~----~l 323 (407)
+|..- ..+.. .+..+++|+.|+++++. ++......++ .+ ..+++|+.|++++|.--. .+
T Consensus 225 ~n~l~~~g~~~l~~---------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 225 DNTFTHLGSSALAI---------ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp SSCCHHHHHHHHHH---------HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCCCcHHHHHHHH---------HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 55421 11111 14456677777777743 3332111111 01 126778888888775433 26
Q ss_pred cccc-ccccccCEEEeccCcCcccccC--chhhhccccCCEEEEec
Q 047829 324 VPAS-WHLENLATLKVSKCHGLINLLT--LSTSESLVNLERMKITD 366 (407)
Q Consensus 324 ~~~~-~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~ 366 (407)
|..+ ..+++|++|++++|+ +....+ ..+...++.++...+..
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhh
Confidence 6555 457888999988853 443321 33344456666555544
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=7.1e-11 Score=106.32 Aligned_cols=199 Identities=18% Similarity=0.166 Sum_probs=135.7
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+.++..+.+.++... +. .....+++|+.|.+.++. +..+..+. .+++|+.|+++++. +..+
T Consensus 16 ~~~~~l~~l~l~~~~~~-~~---~~~~~l~~L~~L~l~~~~-i~~~~~l~-----------~l~~L~~L~l~~n~-l~~~ 78 (272)
T 3rfs_A 16 DAFAETIKANLKKKSVT-DA---VTQNELNSIDQIIANNSD-IKSVQGIQ-----------YLPNVRYLALGGNK-LHDI 78 (272)
T ss_dssp HHHHHHHHHHHTCSCTT-SE---ECHHHHTTCCEEECTTSC-CCCCTTGG-----------GCTTCCEEECTTSC-CCCC
T ss_pred chHHHHHHHHhcCcccc-cc---cccccccceeeeeeCCCC-cccccccc-----------cCCCCcEEECCCCC-CCCc
Confidence 44555666656554332 22 225788999999999874 44332211 36899999999864 4433
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
. .+..+++|++|++.++ .++.+++.. ...+++|++|+++++..- .+.+ ..+..+++|+.|+++++
T Consensus 79 ~----~l~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~-~~~~--------~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 79 S----ALKELTNLTYLILTGN-QLQSLPNGV-FDKLTNLKELVLVENQLQ-SLPD--------GVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp G----GGTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTSCCC-CCCT--------TTTTTCTTCCEEECCSS
T ss_pred h----hhcCCCCCCEEECCCC-ccCccChhH-hcCCcCCCEEECCCCcCC-ccCH--------HHhccCCCCCEEECCCC
Confidence 2 3557899999999886 566665543 345899999999887532 2211 11456889999999985
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
.++.++...+.. +++|+.|++++|. +..+++. +..+++|++|+++++ .+..+++ .....+++|+.|++.++
T Consensus 144 -~l~~~~~~~~~~---l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 144 -QLQSLPKGVFDK---LTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -CCCCCCTTTTTT---CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred -ccCccCHHHhcc---CccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCC
Confidence 667777655443 8899999999875 5555543 477899999999884 5666643 44567889999999876
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=1.8e-10 Score=105.65 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=24.4
Q ss_pred CCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 307 ANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 307 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
++|+.|+++++. ++.+|..+ +++|++|++++ +.+..++. ...+++|+.|+++++
T Consensus 251 ~~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~-N~l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 251 SALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSS-NRLNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTCCCEECCSSC-CCSCCSCC--CSCCSCEECCS-CCCCSCCC---TTSCCCCSCEECSST
T ss_pred CcCCEEECCCCC-CCchhhhh--cCCCCEEECCC-CcCCCCch---hhhCCCccEEECcCC
Confidence 455555555442 33444433 24555555554 23333311 233455555555444
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.14 E-value=3.8e-10 Score=100.25 Aligned_cols=176 Identities=16% Similarity=0.115 Sum_probs=121.8
Q ss_pred ccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccC
Q 047829 159 NNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
...+.++++++ .+..++. ...++++.|++.++. +..+.. ..+..+++|+.|+++++ .++.+++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~------------~~~~~l~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~ 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS------------GIPADTEKLDLQSTG-LATLSD--ATFRGLTKLTWLNLDYN-QLQTLSA 76 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS------------CCCTTCCEEECTTSC-CCCCCT--TTTTTCTTCCEEECTTS-CCCCCCT
T ss_pred CCCeEEecCCC-CccccCC------------CCCCCCCEEEccCCC-cCccCH--hHhcCcccCCEEECCCC-cCCccCH
Confidence 45677888764 3444332 123689999998764 433322 23567899999999884 5777655
Q ss_pred cccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCc
Q 047829 239 NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECS 318 (407)
Q Consensus 239 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 318 (407)
.. +..+++|++|+++++... .+.+ ..+..+++|+.|++++ +.++.++...+.. +++|+.|+++++
T Consensus 77 ~~-~~~l~~L~~L~L~~n~l~-~~~~--------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~Ls~N- 141 (251)
T 3m19_A 77 GV-FDDLTELGTLGLANNQLA-SLPL--------GVFDHLTQLDKLYLGG-NQLKSLPSGVFDR---LTKLKELRLNTN- 141 (251)
T ss_dssp TT-TTTCTTCCEEECTTSCCC-CCCT--------TTTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-
T ss_pred hH-hccCCcCCEEECCCCccc-ccCh--------hHhcccCCCCEEEcCC-CcCCCcChhHhcc---CCcccEEECcCC-
Confidence 43 345899999999887533 2211 1245688999999998 4677777665544 889999999987
Q ss_pred ccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 319 KLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 319 ~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.++.+++ .+..+++|++|++++ +.+..+++ .....+++|+.|++.+++
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLST-NQLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred cCCccCHHHcCcCcCCCEEECCC-CcCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 4666665 567889999999988 46666643 345678899999998763
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=1.3e-10 Score=99.20 Aligned_cols=111 Identities=11% Similarity=0.152 Sum_probs=66.5
Q ss_pred cccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 41 LEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 41 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
..+++|++|+++++ .+..+| ++..+++|++|++.++.. . .+ ..+..+++|++|+++++. +..
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~-------~-------~~-~~l~~l~~L~~L~l~~n~-l~~ 102 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHA-------T-------NY-NPISGLSNLERLRIMGKD-VTS 102 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCC-------S-------CC-GGGTTCTTCCEEEEECTT-CBG
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCC-------C-------cc-hhhhcCCCCCEEEeECCc-cCc
Confidence 46789999999988 677777 678888999998865210 0 01 134456677777777655 332
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
..... + ..+++|+.|++++|...... ...+..+++|++|++++|..+..
T Consensus 103 ~~~~~-l--~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 103 DKIPN-L--SGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp GGSCC-C--TTCTTCCEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCC
T ss_pred ccChh-h--cCCCCCCEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCccc
Confidence 11111 2 23666777777766544321 23356666677777766643333
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.10 E-value=7.4e-11 Score=110.80 Aligned_cols=68 Identities=13% Similarity=-0.071 Sum_probs=36.4
Q ss_pred HHHhhcCCCCccEEEeccCCCcceecc----CCCCCccccC-CceEEEEecCCCCCcCCccchhhcc-----ccCCeeEE
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWH----GQALPVSFFN-NLCKLVVDDCTNMSSAIPVNLLRCL-----NNLGWLEV 166 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l 166 (407)
+|+.....++|++|+++++. +..... .. + ..++ +|+.|++++|.... ..+ ..+..+ ++|++|++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-l--~~~~~~L~~L~Ls~N~l~~-~~~-~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQA-F--ANTPASVTSLNLSGNSLGF-KNS-DELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHH-H--HTCCTTCCEEECCSSCGGG-SCH-HHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHH-H--HhCCCceeEEECcCCCCCH-HHH-HHHHHHHhccCCCccEEEC
Confidence 33344445558888888776 433221 00 1 1245 77777777764432 221 223333 77777777
Q ss_pred cccc
Q 047829 167 RNCD 170 (407)
Q Consensus 167 ~~~~ 170 (407)
++|.
T Consensus 88 s~n~ 91 (362)
T 3goz_A 88 SGNF 91 (362)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7764
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.08 E-value=5.4e-10 Score=101.54 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=83.8
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.+++|++|++++| .+..++ ++..+++|++|++.++. +..++. +..+++|++|+++++. ++..
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~--------------l~~~~~-l~~l~~L~~L~l~~n~-l~~~ 105 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK--------------LTDIKP-LANLKNLGWLFLDENK-VKDL 105 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC--------------CCCCGG-GTTCTTCCEEECCSSC-CCCG
T ss_pred hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCc--------------cCCCcc-cccCCCCCEEECCCCc-CCCC
Confidence 4455555555555 444443 34555555555553310 111111 3445556666665554 2221
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
+. + ..+++|+.|++.+|... .+ ..+..+++|+.|++++|. +..+..+ . .+++|+.|+++
T Consensus 106 ~~---l--~~l~~L~~L~L~~n~i~-~~---~~l~~l~~L~~L~l~~n~-l~~~~~l----------~-~l~~L~~L~L~ 164 (291)
T 1h6t_A 106 SS---L--KDLKKLKSLSLEHNGIS-DI---NGLVHLPQLESLYLGNNK-ITDITVL----------S-RLTKLDTLSLE 164 (291)
T ss_dssp GG---G--TTCTTCCEEECTTSCCC-CC---GGGGGCTTCCEEECCSSC-CCCCGGG----------G-GCTTCSEEECC
T ss_pred hh---h--ccCCCCCEEECCCCcCC-CC---hhhcCCCCCCEEEccCCc-CCcchhh----------c-cCCCCCEEEcc
Confidence 11 1 23566666666665432 22 225566666666666653 2222110 0 24666666666
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccc
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKS 258 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 258 (407)
++ .+..+.. +..+++|+.|+++++ .++.++. ...+++|+.|++++++.
T Consensus 165 ~N-~l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 165 DN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEEE
T ss_pred CC-ccccchh----hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCcc
Confidence 55 2333221 345667777777664 4444432 33477777777776653
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.07 E-value=3.8e-10 Score=96.30 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=82.3
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
+++|+.|+++++ .+..++ .+..+++|+.|++.+| .++..+ ....+++|++|+++++..-...+
T Consensus 43 l~~L~~L~l~~n-~i~~l~----~l~~l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~-------- 105 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT----GIEYAHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKI-------- 105 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT----TGGGCTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGS--------
T ss_pred cCCccEEeccCC-CccChH----HHhcCCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccC--------
Confidence 467788877765 333332 2446777888888776 444332 13346777777776654322111
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCch
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 351 (407)
..+..+++|+.|+++++ .++......+. .+++|+.|++++|..+..++ .+..+++|++|++++| .+.++.
T Consensus 106 -~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~--- 175 (197)
T 4ezg_A 106 -PNLSGLTSLTLLDISHS-AHDDSILTKIN---TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR--- 175 (197)
T ss_dssp -CCCTTCTTCCEEECCSS-BCBGGGHHHHT---TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT---
T ss_pred -hhhcCCCCCCEEEecCC-ccCcHhHHHHh---hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH---
Confidence 12445667777777763 33322122222 26667777776665455554 3566666777777663 344432
Q ss_pred hhhccccCCEEEEecc
Q 047829 352 TSESLVNLERMKITDC 367 (407)
Q Consensus 352 ~~~~l~~L~~L~i~~c 367 (407)
....+++|+.|++.++
T Consensus 176 ~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TGGGCSSCCEEEECBC
T ss_pred HhccCCCCCEEEeeCc
Confidence 2345566666666655
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.05 E-value=3e-09 Score=94.32 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=122.1
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.+.+.+++.++. ++.+|.. +. ++++.|+++++. +..+... .+. .+++|++|+++++ .+..+..
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~--~~--~~l~~L~L~~n~-l~~~~~~--------~~~-~l~~L~~L~L~~n-~l~~~~~- 76 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSG--IP--ADTEKLDLQSTG-LATLSDA--------TFR-GLTKLTWLNLDYN-QLQTLSA- 76 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSC--CC--TTCCEEECTTSC-CCCCCTT--------TTT-TCTTCCEEECTTS-CCCCCCT-
T ss_pred CCCeEEecCCCC-ccccCCC--CC--CCCCEEEccCCC-cCccCHh--------Hhc-CcccCCEEECCCC-cCCccCH-
Confidence 567788887754 4455542 22 689999999874 3333211 111 3589999999986 3444322
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
..+..+++|+.|+++++ .++.+++.. +..+++|++|+++++.. ..+.+. .+..+++|+.|+++++ .+
T Consensus 77 -~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l-~~~~~~--------~~~~l~~L~~L~Ls~N-~l 143 (251)
T 3m19_A 77 -GVFDDLTELGTLGLANN-QLASLPLGV-FDHLTQLDKLYLGGNQL-KSLPSG--------VFDRLTKLKELRLNTN-QL 143 (251)
T ss_dssp -TTTTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSSCC-CCCCTT--------TTTTCTTCCEEECCSS-CC
T ss_pred -hHhccCCcCCEEECCCC-cccccChhH-hcccCCCCEEEcCCCcC-CCcChh--------HhccCCcccEEECcCC-cC
Confidence 23567899999999885 577766543 44689999999988743 322211 1456899999999994 77
Q ss_pred ccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
+.++...+.. +++|+.|+++++. ++.+++ .+..+++|++|++++++
T Consensus 144 ~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPAGAFDK---LTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHHHcCc---CcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 7877765554 8999999999875 555554 56789999999999854
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.05 E-value=2.6e-09 Score=97.01 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=107.3
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++|+.|.+.+|... .++ .+..+++|+.|++++|. +..+..+ . .+++|+.|+++++. +..+
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~---~~~~l~~L~~L~L~~n~-l~~~~~l----------~-~l~~L~~L~l~~n~-l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ---GIQYLPNVTKLFLNGNK-LTDIKPL----------A-NLKNLGWLFLDENK-VKDL 105 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT---TGGGCTTCCEEECCSSC-CCCCGGG----------T-TCTTCCEEECCSSC-CCCG
T ss_pred hhcCcccEEEccCCCcc-cCh---hHhcCCCCCEEEccCCc-cCCCccc----------c-cCCCCCEEECCCCc-CCCC
Confidence 34788899999887543 332 26788899999998864 3333221 1 35788888888763 4443
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
. .+..+++|+.|+++++ .++.++ ....+++|+.|+++++..- .+ .....+++|+.|+++++
T Consensus 106 ~----~l~~l~~L~~L~L~~n-~i~~~~---~l~~l~~L~~L~l~~n~l~-~~----------~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 106 S----SLKDLKKLKSLSLEHN-GISDIN---GLVHLPQLESLYLGNNKIT-DI----------TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp G----GGTTCTTCCEEECTTS-CCCCCG---GGGGCTTCCEEECCSSCCC-CC----------GGGGGCTTCSEEECCSS
T ss_pred h----hhccCCCCCEEECCCC-cCCCCh---hhcCCCCCCEEEccCCcCC-cc----------hhhccCCCCCEEEccCC
Confidence 2 2456788888888775 455442 1335788888888776422 11 22556778888888774
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
.++.++. +. .+++|+.|+++++ .++.++. +..+++|+.|+++++
T Consensus 167 -~l~~~~~--l~---~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 167 -QISDIVP--LA---GLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -CCCCCGG--GT---TCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred -ccccchh--hc---CCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence 4555443 22 3777888888776 3555543 667778888888774
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=1.2e-09 Score=109.25 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=26.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
|++|+.|+++++ .+..++. ...+++|+.|++++| .+..++. +..+++|++|++.
T Consensus 42 L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECC
T ss_pred CCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECc
Confidence 455555555553 2333321 234555555555555 4444443 4555555555553
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=2.7e-10 Score=106.98 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=33.9
Q ss_pred CCcceEecccccccccccccccc-cccccCCcCceeeccCc-------cccccccccccccccCEEEeccC
Q 047829 279 PQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPEISECS-------KLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 279 ~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
++|+.|+++++ .++..+...+. ....+++|+.|++++|. .+..++..+..+++|+.|+++++
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 46777777763 34443321111 01235677777777765 12233344556677777888763
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.95 E-value=2.4e-09 Score=106.98 Aligned_cols=194 Identities=18% Similarity=0.207 Sum_probs=135.0
Q ss_pred CCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccc
Q 047829 127 LPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKL 206 (407)
Q Consensus 127 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 206 (407)
||...+.++..+.+.... +.++.. ...+++|+.|++++|. +..++.+. .+++|+.|+++++. +
T Consensus 15 fpd~~l~~l~~l~l~~~~-i~~~~~---~~~L~~L~~L~l~~n~-i~~l~~l~-----------~l~~L~~L~Ls~N~-l 77 (605)
T 1m9s_A 15 FPDDAFAETIKDNLKKKS-VTDAVT---QNELNSIDQIIANNSD-IKSVQGIQ-----------YLPNVTKLFLNGNK-L 77 (605)
T ss_dssp CCSHHHHHHHHHHTTCSC-TTSEEC---HHHHTTCCCCBCTTCC-CCCCTTGG-----------GCTTCCEEECTTSC-C
T ss_pred CCcHHHHHHHHHhccCCC-cccccc---hhcCCCCCEEECcCCC-CCCChHHc-----------cCCCCCEEEeeCCC-C
Confidence 444445555555554432 233222 5788999999999874 44433211 36899999999874 4
Q ss_pred cccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEec
Q 047829 207 KRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLEL 286 (407)
Q Consensus 207 ~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 286 (407)
..+.. +..+++|+.|++.+| .+..++. ...+++|+.|++++|..- . .+.+..+++|+.|+|
T Consensus 78 ~~~~~----l~~l~~L~~L~Ls~N-~l~~l~~---l~~l~~L~~L~Ls~N~l~-~----------l~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 78 TDIKP----LTNLKNLGWLFLDEN-KIKDLSS---LKDLKKLKSLSLEHNGIS-D----------INGLVHLPQLESLYL 138 (605)
T ss_dssp CCCGG----GGGCTTCCEEECCSS-CCCCCTT---STTCTTCCEEECTTSCCC-C----------CGGGGGCTTCSEEEC
T ss_pred CCChh----hccCCCCCEEECcCC-CCCCChh---hccCCCCCEEEecCCCCC-C----------CccccCCCccCEEEC
Confidence 44322 567899999999986 4655432 345899999999887632 2 123667899999999
Q ss_pred ccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEec
Q 047829 287 SRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITD 366 (407)
Q Consensus 287 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 366 (407)
+++ .+..++ . +..+++|+.|++++|. +..+++ +..+++|+.|++++| .+..++ ....+++|+.|++.+
T Consensus 139 s~N-~l~~l~--~---l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 139 GNN-KITDIT--V---LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFS 206 (605)
T ss_dssp CSS-CCCCCG--G---GGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEECCS
T ss_pred CCC-ccCCch--h---hcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh---HHccCCCCCEEEccC
Confidence 985 455552 2 3348999999999875 555554 788999999999985 666652 356789999999998
Q ss_pred cc
Q 047829 367 CK 368 (407)
Q Consensus 367 c~ 368 (407)
|+
T Consensus 207 N~ 208 (605)
T 1m9s_A 207 QE 208 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 84
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=1.3e-09 Score=97.56 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=96.8
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+.+++.+.+.+. .+++++. ...+++|++|++++| .+..++ .+..+++|++|++.++ .+..
T Consensus 18 l~~l~~l~l~~~-~i~~~~~---~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N--------------~i~~ 77 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLVS---QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN--------------QISD 77 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEEC---HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCC
T ss_pred HHHHHHHHhcCC-Ccccccc---hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC--------------ccCC
Confidence 556666677763 4555541 347899999999998 777887 6788899999998641 1111
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
++. +..+++|++|+++++. ++..+. +. .++|+.|++++|... .+ + .+..+++|+.|++++|. ++.+.
T Consensus 78 ~~~-l~~l~~L~~L~L~~N~-l~~l~~---~~---~~~L~~L~L~~N~l~-~~-~--~l~~l~~L~~L~Ls~N~-i~~~~ 144 (263)
T 1xeu_A 78 LSP-LKDLTKLEELSVNRNR-LKNLNG---IP---SACLSRLFLDNNELR-DT-D--SLIHLKNLEILSIRNNK-LKSIV 144 (263)
T ss_dssp CGG-GTTCSSCCEEECCSSC-CSCCTT---CC---CSSCCEEECCSSCCS-BS-G--GGTTCTTCCEEECTTSC-CCBCG
T ss_pred Chh-hccCCCCCEEECCCCc-cCCcCc---cc---cCcccEEEccCCccC-CC-h--hhcCcccccEEECCCCc-CCCCh
Confidence 222 5667788888888775 333221 11 167888888776543 22 2 26677777888777753 33322
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEec
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIEN 229 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~ 229 (407)
.+. .+++|+.|+++++. +..+ ..+..+++|+.|++.+
T Consensus 145 ~l~-----------~l~~L~~L~L~~N~-i~~~----~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 145 MLG-----------FLSKLEVLDLHGNE-ITNT----GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp GGG-----------GCTTCCEEECTTSC-CCBC----TTSTTCCCCCEEEEEE
T ss_pred HHc-----------cCCCCCEEECCCCc-Ccch----HHhccCCCCCEEeCCC
Confidence 110 24666666666542 2222 1133445555555544
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.87 E-value=6.5e-09 Score=89.34 Aligned_cols=131 Identities=17% Similarity=0.105 Sum_probs=92.8
Q ss_pred CCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccc
Q 047829 219 LPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKE 298 (407)
Q Consensus 219 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~ 298 (407)
+++|+.|++.++ .++.+++.. +..+++|++|+++++.. +.+.+. .+..+++|+.|+++++ .++.++..
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~--------~~~~l~~L~~L~Ls~n-~l~~~~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGV-FDELTSLTQLYLGGNKL-QSLPNG--------VFNKLTSLTYLNLSTN-QLQSLPNG 94 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSCC-CCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEcCCC-ccCcCChhh-hcccccCcEEECCCCcc-CccChh--------hcCCCCCcCEEECCCC-cCCccCHh
Confidence 568999999885 566665433 44589999999988643 222111 1456889999999984 56677665
Q ss_pred ccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 299 NAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
.+.. +++|+.|+++++. ++.+++. +..+++|++|+++++ .+..+++ .....+++|+.|++.++
T Consensus 95 ~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 95 VFDK---LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTT---CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred HhcC---ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCC
Confidence 5443 8899999998864 5556543 577899999999884 5666533 44567889999998875
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.86 E-value=2.8e-08 Score=86.23 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
+.++.|++++. .+..+.. ...+..+++|+.|++.++ .++.+++.. +..+++|++|+++++.... +.+
T Consensus 32 ~~~~~L~L~~N-~l~~~~~-~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l~~-~~~-------- 98 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEA-TGIFKKLPQLRKINFSNN-KITDIEEGA-FEGASGVNEILLTSNRLEN-VQH-------- 98 (220)
T ss_dssp TTCSEEECCSS-CCCEECC-CCCGGGCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCC-CCG--------
T ss_pred CCCCEEEcCCC-cCCccCc-hhhhccCCCCCEEECCCC-cCCEECHHH-hCCCCCCCEEECCCCccCc-cCH--------
Confidence 45677777765 2333311 112445677777777663 455554433 2336666666666554321 111
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc-ccccccccccCEEEecc
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL-VPASWHLENLATLKVSK 340 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~ 340 (407)
..+..+++|+.|++++ +.+..++...+.. +++|+.|+++++. ++.+ |..+..+++|++|++++
T Consensus 99 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 99 KMFKGLESLKTLMLRS-NRITCVGNDSFIG---LSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp GGGTTCSSCCEEECTT-SCCCCBCTTSSTT---CTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred hHhcCCcCCCEEECCC-CcCCeECHhHcCC---CccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecC
Confidence 1133455666666665 3344444333332 5566666666543 3333 44455556666666655
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.83 E-value=1.1e-08 Score=95.75 Aligned_cols=154 Identities=15% Similarity=0.076 Sum_probs=101.6
Q ss_pred CcccEEeccccccccccccCCCccc-cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNII-ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
+.++.|++++. .+..+... .+. .+++|+.|++.++ +++.+++.. +..+++|++|+++++.. ..+.+
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~--~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l-~~~~~------- 105 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAE--WTPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNHL-HTLDE------- 105 (361)
T ss_dssp TTCSEEECCSS-CCCEECTT--SSSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCC-CEECT-------
T ss_pred CCCCEEECCCC-CCCccChh--hhhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCcC-CcCCH-------
Confidence 56888999876 45554322 233 6788999999874 677776544 34588899999988753 32211
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccc----ccccccCEEEeccCcCcccc
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPAS----WHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l~~c~~l~~~ 347 (407)
..+..+++|+.|++++ +.+..++...+.. +++|+.|+++++ .+..+|... ..+++|+.|++++ +.+..+
T Consensus 106 -~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~---l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l 178 (361)
T 2xot_A 106 -FLFSDLQALEVLLLYN-NHIVVVDRNAFED---MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKL 178 (361)
T ss_dssp -TTTTTCTTCCEEECCS-SCCCEECTTTTTT---CTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS-SCCCCC
T ss_pred -HHhCCCcCCCEEECCC-CcccEECHHHhCC---cccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCcc
Confidence 1245678899999988 4566666555544 788899998876 456666544 4688899999987 567666
Q ss_pred cCchhhhcccc--CCEEEEecc
Q 047829 348 LTLSTSESLVN--LERMKITDC 367 (407)
Q Consensus 348 ~~~~~~~~l~~--L~~L~i~~c 367 (407)
+. .....++. ++.|++.++
T Consensus 179 ~~-~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 179 PL-TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CH-HHHHHSCHHHHTTEECCSS
T ss_pred CH-HHhhhccHhhcceEEecCC
Confidence 33 33445554 467777664
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.83 E-value=2.4e-08 Score=98.74 Aligned_cols=181 Identities=16% Similarity=0.126 Sum_probs=126.9
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.+++.|++.++.. +.++.. + +++|+.|++++|. ++.++ ..+++|+.|+++++ .+..++.
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~--l--~~~L~~L~Ls~N~-l~~ip-------------~~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDN--L--PPQITVLEITQNA-LISLP-------------ELPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSC--C--CTTCSEEECCSSC-CSCCC-------------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred CCccEEEeCCCCC-CccCHh--H--cCCCCEEECcCCC-Ccccc-------------cccCCCCEEEccCC-CCCCcch-
Confidence 4899999999765 445542 2 3789999999874 44433 13589999999987 4555443
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
+ ..+|+.|+++++ .++.++. .+++|+.|+++++..- .+ + ..+++|+.|+++++ .+
T Consensus 118 ---l--~~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N~l~-~l----------p--~~l~~L~~L~Ls~N-~L 172 (571)
T 3cvr_A 118 ---L--PASLKHLDVDNN-QLTMLPE-----LPALLEYINADNNQLT-ML----------P--ELPTSLEVLSVRNN-QL 172 (571)
T ss_dssp ---C--CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCS-CC----------C--CCCTTCCEEECCSS-CC
T ss_pred ---h--hcCCCEEECCCC-cCCCCCC-----cCccccEEeCCCCccC-cC----------C--CcCCCcCEEECCCC-CC
Confidence 1 128999999885 5777654 3899999999887632 11 1 14679999999984 56
Q ss_pred ccccccccccccccCCcCceeeccCcccccccccccccccc-------CEEEeccCcCcccccCchhhhccccCCEEEEe
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL-------ATLKVSKCHGLINLLTLSTSESLVNLERMKIT 365 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 365 (407)
+.+|. + .++|+.|+++++ .++.+|. +.. +| +.|++++ +.+..+ +..+ ..+++|+.|+++
T Consensus 173 ~~lp~--l-----~~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~l-p~~l-~~l~~L~~L~L~ 238 (571)
T 3cvr_A 173 TFLPE--L-----PESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHI-PENI-LSLDPTCTIILE 238 (571)
T ss_dssp SCCCC--C-----CTTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCC-CGGG-GGSCTTEEEECC
T ss_pred CCcch--h-----hCCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-Ccceec-CHHH-hcCCCCCEEEee
Confidence 66765 3 278999999987 4667776 433 77 9999998 567776 3333 358999999999
Q ss_pred cccchhhh
Q 047829 366 DCKMMEEI 373 (407)
Q Consensus 366 ~c~~l~~~ 373 (407)
+++--..+
T Consensus 239 ~N~l~~~~ 246 (571)
T 3cvr_A 239 DNPLSSRI 246 (571)
T ss_dssp SSSCCHHH
T ss_pred CCcCCCcC
Confidence 98543333
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.82 E-value=1.6e-08 Score=87.71 Aligned_cols=152 Identities=8% Similarity=0.009 Sum_probs=108.0
Q ss_pred ccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccccc
Q 047829 195 LSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDE 274 (407)
Q Consensus 195 L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 274 (407)
-+.+++++. .++.++.. -++.++.|++.+ +.++.+++...+..+++|+.|+++++.. +.+.+ ..
T Consensus 13 ~~~l~~s~n-~l~~iP~~-----~~~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~--------~~ 76 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEH-----IPQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEE--------GA 76 (220)
T ss_dssp TTEEECCSS-CCSSCCSC-----CCTTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSSCC-CEECT--------TT
T ss_pred CCEeEeCCC-CcccCccC-----CCCCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCCcC-CEECH--------HH
Confidence 346777654 45555432 245678999988 4677776555566799999999988753 22211 12
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
+..+++|+.|++++ +.++.++...+.. +++|++|+++++..-...|..+..+++|++|++++ +.+..+.+ ....
T Consensus 77 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~ 150 (220)
T 2v70_A 77 FEGASGVNEILLTS-NRLENVQHKMFKG---LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAP-GAFD 150 (220)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCGGGGTT---CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCT-TTTT
T ss_pred hCCCCCCCEEECCC-CccCccCHhHhcC---CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECH-HHhc
Confidence 56789999999998 4677777665554 88999999998764334456678899999999998 56776644 3456
Q ss_pred ccccCCEEEEeccc
Q 047829 355 SLVNLERMKITDCK 368 (407)
Q Consensus 355 ~l~~L~~L~i~~c~ 368 (407)
.+++|+.|++.+++
T Consensus 151 ~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 151 TLHSLSTLNLLANP 164 (220)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEecCcC
Confidence 78999999998763
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=6.4e-09 Score=86.14 Aligned_cols=129 Identities=20% Similarity=0.199 Sum_probs=58.2
Q ss_pred CCCccEEeEecCCCCc--cccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccc
Q 047829 219 LPMFWSLTIENCPDME--TFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLW 296 (407)
Q Consensus 219 ~~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~ 296 (407)
+++|+.|++.+|. ++ .+ +.. ...+++|+.|++++|. ++.+ .....+++|+.|+++++ .+....
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i-~~~-~~~l~~L~~L~l~~n~-l~~~----------~~~~~l~~L~~L~Ls~N-~l~~~~ 87 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKI-EGL-TAEFVNLEFLSLINVG-LISV----------SNLPKLPKLKKLELSEN-RIFGGL 87 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBC-SSC-CGGGGGCCEEEEESSC-CCCC----------SSCCCCSSCCEEEEESC-CCCSCC
T ss_pred cccCCEEECCCCC-CChhhH-HHH-HHhCCCCCEEeCcCCC-CCCh----------hhhccCCCCCEEECcCC-cCchHH
Confidence 4677777777754 44 22 222 2345666666666554 2211 11344555555555553 222211
Q ss_pred ccccccccccCCcCceeeccCccccccc--cccccccccCEEEeccCcCcccccC--chhhhccccCCEEEEecc
Q 047829 297 KENAESNKVFANLKSPEISECSKLQKLV--PASWHLENLATLKVSKCHGLINLLT--LSTSESLVNLERMKITDC 367 (407)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~c 367 (407)
...+ ..+++|+.|+++++ .++.++ ..+..+++|++|+++++ .+...++ ......+++|++|++.+|
T Consensus 88 ~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 88 DMLA---EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CHHH---HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HHHH---hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 1111 11455555555554 233332 33444555555555543 3333321 012334455555555554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.80 E-value=2.5e-08 Score=87.12 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=109.7
Q ss_pred cccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccc
Q 047829 194 SLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFD 273 (407)
Q Consensus 194 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 273 (407)
+.+.++..+. .+..++.. -+++|+.|++.++ .+..+.+.. +..+++|++|+++++.. ..+...
T Consensus 20 s~~~v~c~~~-~l~~ip~~-----~~~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~N~l-~~i~~~-------- 82 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAG-----IPTNAQILYLHDN-QITKLEPGV-FDSLINLKELYLGSNQL-GALPVG-------- 82 (229)
T ss_dssp ETTEEECTTS-CCSSCCSC-----CCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCC-CCCCTT--------
T ss_pred eCCEeEccCC-CcCccCCC-----CCCCCCEEEcCCC-ccCccCHHH-hhCccCCcEEECCCCCC-CCcChh--------
Confidence 4555666543 45555432 2478999999885 577765544 34589999999988763 322111
Q ss_pred cccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhh
Q 047829 274 EKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 274 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
.+..+++|+.|++++ +.++.++...+.. +++|+.|+++++. ++.+|..+..+++|++|++++ +.+..+++ ...
T Consensus 83 ~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~---l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~-~~~ 155 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGT-NQLTVLPSAVFDR---LVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQ-NQLKSIPH-GAF 155 (229)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCS-SCCCCCCT-TTT
T ss_pred hcccCCCcCEEECCC-CcCCccChhHhCc---chhhCeEeccCCc-ccccCcccccCCCCCEEECCC-CcCCccCH-HHH
Confidence 145689999999998 4777777765554 8899999999864 678888888999999999998 57777643 445
Q ss_pred hccccCCEEEEeccc
Q 047829 354 ESLVNLERMKITDCK 368 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~ 368 (407)
..+++|+.|++.+++
T Consensus 156 ~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred hCCCCCCEEEeeCCC
Confidence 678999999998763
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=3e-08 Score=98.12 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=23.0
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
+|+.|+++++ ++..+|... +++|++|+++++ .+..+| ..+++|++|++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l----~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls 108 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL----PPQITVLEITQN-ALISLP---ELPASLEYLDAC 108 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC----CTTCSEEECCSS-CCSCCC---CCCTTCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH----cCCCCEEECcCC-CCcccc---cccCCCCEEEcc
Confidence 4555555553 344433321 245555555555 444454 334555555553
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.79 E-value=4.2e-08 Score=84.20 Aligned_cols=148 Identities=14% Similarity=0.043 Sum_probs=103.4
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
.+++++|+++++ .+..+.. ..+..+++|++|++.++ +++.+++.. +..+++|++|+++++..- .+.+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~-~~~~------- 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPN--GVFDELTSLTQLYLGGN-KLQSLPNGV-FNKLTSLTYLNLSTNQLQ-SLPN------- 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCT--TTTTTCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCC-CCCT-------
T ss_pred CCCCcEEEcCCC-ccCcCCh--hhhcccccCcEEECCCC-ccCccChhh-cCCCCCcCEEECCCCcCC-ccCH-------
Confidence 478999999986 3444322 22457899999999885 677665543 345899999999887532 2211
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCc
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTL 350 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~ 350 (407)
..+..+++|+.|++++ +.++.++...+.. +++|+.|+++++. ++.+++. +..+++|++|++++++..
T Consensus 94 -~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 94 -GVFDKLTQLKELALNT-NQLQSLPDGVFDK---LTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp -TTTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred -hHhcCccCCCEEEcCC-CcCcccCHhHhcc---CCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee------
Confidence 1145689999999998 4677777665544 8999999999874 5566554 677999999999986321
Q ss_pred hhhhccccCCEEEEecc
Q 047829 351 STSESLVNLERMKITDC 367 (407)
Q Consensus 351 ~~~~~l~~L~~L~i~~c 367 (407)
..++.|+.|.++.+
T Consensus 162 ---~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWIN 175 (208)
T ss_dssp ---CCTTTTHHHHHHHH
T ss_pred ---cCCCCHHHHHHHHH
Confidence 23455666655544
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=6.1e-09 Score=86.25 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=17.0
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|++++|.. +.++....+..+++|+.|++++|
T Consensus 94 l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 94 LPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSS
T ss_pred CCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCC
Confidence 45555555555432 22222123445555555555554
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.78 E-value=2.8e-08 Score=86.24 Aligned_cols=150 Identities=15% Similarity=0.045 Sum_probs=104.0
Q ss_pred cEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccc
Q 047829 196 SWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEK 275 (407)
Q Consensus 196 ~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 275 (407)
+.++..+. +++.++.. -+++|+.|++.+. .++.+++.. +..+++|+.|+++++..- .+.+ ..+
T Consensus 14 ~~v~c~~~-~l~~iP~~-----l~~~l~~L~l~~n-~i~~i~~~~-~~~l~~L~~L~Ls~N~i~-~~~~--------~~~ 76 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTN-----LPETITEIRLEQN-TIKVIPPGA-FSPYKKLRRIDLSNNQIS-ELAP--------DAF 76 (220)
T ss_dssp TEEECTTS-CCSSCCSS-----CCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECCSSCCC-EECT--------TTT
T ss_pred CEEEcCCC-CcCcCCCc-----cCcCCCEEECCCC-cCCCcCHhH-hhCCCCCCEEECCCCcCC-CcCH--------HHh
Confidence 34454432 45554432 1368999999884 677776544 345899999999887532 2211 225
Q ss_pred cccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhc
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
..+++|+.|++++ +.++.++...+.. +++|+.|+++++..-...+..+..+++|++|++++ +.+..+++ .....
T Consensus 77 ~~l~~L~~L~Ls~-N~l~~l~~~~f~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~ 150 (220)
T 2v9t_B 77 QGLRSLNSLVLYG-NKITELPKSLFEG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAK-GTFSP 150 (220)
T ss_dssp TTCSSCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTT
T ss_pred hCCcCCCEEECCC-CcCCccCHhHccC---CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECH-HHHhC
Confidence 6788999999998 5677888766554 88999999998753333345677889999999998 56776643 34557
Q ss_pred cccCCEEEEeccc
Q 047829 356 LVNLERMKITDCK 368 (407)
Q Consensus 356 l~~L~~L~i~~c~ 368 (407)
+++|+.|++.+++
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 8899999988753
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.77 E-value=1.1e-08 Score=91.51 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=106.8
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|+.|+++++ +++.++ ....+++|++|++++| .+..++. +..+++|++|++.++.
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-------------- 96 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-------------- 96 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC--------------
T ss_pred hhhcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc--------------
Confidence 345789999999996 577665 2457899999999999 7888886 8999999999996521
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
+..++. ... ++|++|+++++. ++.... + ..+++|+.|++++|... +++ .+..+++|+.|++++|. +.
T Consensus 97 l~~l~~-~~~-~~L~~L~L~~N~-l~~~~~---l--~~l~~L~~L~Ls~N~i~-~~~---~l~~l~~L~~L~L~~N~-i~ 163 (263)
T 1xeu_A 97 LKNLNG-IPS-ACLSRLFLDNNE-LRDTDS---L--IHLKNLEILSIRNNKLK-SIV---MLGFLSKLEVLDLHGNE-IT 163 (263)
T ss_dssp CSCCTT-CCC-SSCCEEECCSSC-CSBSGG---G--TTCTTCCEEECTTSCCC-BCG---GGGGCTTCCEEECTTSC-CC
T ss_pred cCCcCc-ccc-CcccEEEccCCc-cCCChh---h--cCcccccEEECCCCcCC-CCh---HHccCCCCCEEECCCCc-Cc
Confidence 111222 122 889999999986 544321 2 34899999999998654 432 47899999999999874 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccc
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLP 204 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (407)
.+.. + ..+++|+.|++.+++
T Consensus 164 ~~~~----------l-~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NTGG----------L-TRLKKVNWIDLTGQK 183 (263)
T ss_dssp BCTT----------S-TTCCCCCEEEEEEEE
T ss_pred chHH----------h-ccCCCCCEEeCCCCc
Confidence 3311 1 135899999998764
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.76 E-value=4.4e-08 Score=84.98 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=96.2
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++++.|++.+. .+..+.. ..+..+++|+.|++.++ .++.+.+.. +..+++|++|+++++..- .+.+.
T Consensus 32 ~~l~~L~l~~n-~i~~i~~--~~~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~------- 98 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP--GAFSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGNKIT-ELPKS------- 98 (220)
T ss_dssp TTCCEEECCSS-CCCEECT--TSSTTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSSCCC-CCCTT-------
T ss_pred cCCCEEECCCC-cCCCcCH--hHhhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCCcCC-ccCHh-------
Confidence 68999999976 4554432 23567899999999885 577776655 345899999999887532 22111
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
.+..+++|+.|++++ +.+..++...+.. +++|+.|+++++. ++.+++ .+..+++|++|++++++
T Consensus 99 -~f~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 -LFEGLFSLQLLLLNA-NKINCLRVDAFQD---LHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -TTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -HccCCCCCCEEECCC-CCCCEeCHHHcCC---CCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 145689999999999 4677776666554 8999999999875 555554 46789999999999843
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.75 E-value=4.5e-08 Score=85.47 Aligned_cols=131 Identities=13% Similarity=0.001 Sum_probs=95.2
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
.++|+.|+++++. +..+.. ..+..+++|+.|++.++ .+..+++.. +..+++|+.|+++++. +..+.+.
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~--~~~~~l~~L~~L~L~~N-~l~~i~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~------ 106 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEP--GVFDSLINLKELYLGSN-QLGALPVGV-FDSLTQLTVLDLGTNQ-LTVLPSA------ 106 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT------
T ss_pred CCCCCEEEcCCCc-cCccCH--HHhhCccCCcEEECCCC-CCCCcChhh-cccCCCcCEEECCCCc-CCccChh------
Confidence 3799999999864 443321 23557899999999985 566665543 4568999999998874 3332211
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
.+..+++|+.|++++ +.++.++.. +..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus 107 --~~~~l~~L~~L~Ls~-N~l~~lp~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 --VFDRLVHLKELFMCC-NKLTELPRG----IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp --TTTTCTTCCEEECCS-SCCCSCCTT----GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred --HhCcchhhCeEeccC-CcccccCcc----cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 145689999999998 467777755 234899999999986 4666664 46789999999999854
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=8.3e-09 Score=83.61 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=42.8
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
+++|+.|+++++.-...+|..+..+++|++|+++++ .+..++.......+++|++|++++| .+..++.- ....+
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~----~~~~~ 136 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDY----RENVF 136 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTH----HHHHH
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHH----HHHHH
Confidence 556666666655432224444445666666666663 3444321123445666666666666 33333200 00123
Q ss_pred eEecccceEecC
Q 047829 386 IVFRKLEYLGLD 397 (407)
Q Consensus 386 ~~~~~L~~L~l~ 397 (407)
..+++|++|+++
T Consensus 137 ~~l~~L~~L~l~ 148 (149)
T 2je0_A 137 KLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEETTB
T ss_pred HHCCCcccccCC
Confidence 455666666654
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=7.1e-09 Score=83.98 Aligned_cols=55 Identities=25% Similarity=0.220 Sum_probs=28.4
Q ss_pred ecccceeeeCcccccc--cccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 17 FSELKFLILDYLPRLT--SFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
+++|+.|+++++. +. .++.. ...+++|++|++++| .+..+ ..+..+++|++|++.
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGL--TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSC--CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCc-CChhHHHHH--HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECC
Confidence 3556666666642 33 33321 234566666666665 44444 344555556665553
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=2.7e-07 Score=85.17 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=59.7
Q ss_pred cCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccC-EEEeccCcCcccccCchhhhc
Q 047829 278 FPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLA-TLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 278 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~ 355 (407)
+++|+.+++.+ ..++.++...|.. +++|+.+++.+. ++.+++ .+..+++|+ .+.+.+ .++.+.. ..+.+
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~---~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQ---KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMG 295 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTT---CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTT
T ss_pred cCCCeEEECCC-CCcceecHhhhhC---CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-hhhhC
Confidence 67899999987 4578888877765 888999988763 666664 356788888 898875 6666643 34567
Q ss_pred cccCCEEEEecc
Q 047829 356 LVNLERMKITDC 367 (407)
Q Consensus 356 l~~L~~L~i~~c 367 (407)
+++|+.+++.+.
T Consensus 296 c~~L~~l~l~~n 307 (329)
T 3sb4_A 296 CDNLRYVLATGD 307 (329)
T ss_dssp CTTEEEEEECSS
T ss_pred CccCCEEEeCCC
Confidence 888888887554
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.62 E-value=7.1e-08 Score=80.46 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=90.6
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
+..+++|+.|++.++ .++.++ .+....++|+.|+++++.. +.+ ..+..+++|+.|++++ +.++.+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~--~~~~~~~~L~~L~Ls~N~l-~~~----------~~l~~l~~L~~L~Ls~-N~l~~~ 79 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIE--NLGATLDQFDAIDFSDNEI-RKL----------DGFPLLRRLKTLLVNN-NRICRI 79 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCC--CGGGGTTCCSEEECCSSCC-CEE----------CCCCCCSSCCEEECCS-SCCCEE
T ss_pred cCCcCCceEEEeeCC-CCchhH--HhhhcCCCCCEEECCCCCC-Ccc----------cccccCCCCCEEECCC-Cccccc
Confidence 446788999999886 566552 2344345899999988753 221 2256688899999988 456666
Q ss_pred cccccccccccCCcCceeeccCcccccccc--ccccccccCEEEeccCcCcccccCc--hhhhccccCCEEEEeccc
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVP--ASWHLENLATLKVSKCHGLINLLTL--STSESLVNLERMKITDCK 368 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~i~~c~ 368 (407)
+...+.. +++|+.|+++++. +..+|. .+..+++|++|+++++ .+...+.. .....+++|+.|++.++.
T Consensus 80 ~~~~~~~---l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 80 GEGLDQA---LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCHHHH---CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred Ccchhhc---CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6553333 7889999998864 566665 5677888999999884 44444221 135677888888888774
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.57 E-value=2.5e-07 Score=86.51 Aligned_cols=175 Identities=13% Similarity=0.056 Sum_probs=119.7
Q ss_pred cEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccc
Q 047829 196 SWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEK 275 (407)
Q Consensus 196 ~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 275 (407)
+.++..+. +++.++.. -++.++.|++++. +++.+++..+...+++|+.|+++++.. ..+.+ ..+
T Consensus 21 ~~l~c~~~-~l~~iP~~-----~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~--------~~~ 84 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS-----LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISS--------EAF 84 (361)
T ss_dssp TEEECCSS-CCSSCCSS-----CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCC-CEECT--------TTT
T ss_pred CEEEeCCC-CcCccCcc-----CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcC-CccCh--------hhc
Confidence 45555543 45555432 2456899999884 688877655443689999999988753 22211 125
Q ss_pred cccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhh--
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTS-- 353 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-- 353 (407)
..+++|+.|++++ +.+..++...+.. +++|+.|+++++......+..+..+++|++|++++ +.+..++. ...
T Consensus 85 ~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~ 158 (361)
T 2xot_A 85 VPVPNLRYLDLSS-NHLHTLDEFLFSD---LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPV-ELIKD 158 (361)
T ss_dssp TTCTTCCEEECCS-SCCCEECTTTTTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCG-GGTC-
T ss_pred cCCCCCCEEECCC-CcCCcCCHHHhCC---CcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCH-HHhcC
Confidence 6789999999999 4677777766554 89999999998764333355678899999999998 56777643 333
Q ss_pred -hccccCCEEEEecccchhhhhccccCCcccceeEecc--cceEecCCCC
Q 047829 354 -ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRK--LEYLGLDCLP 400 (407)
Q Consensus 354 -~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~--L~~L~l~~cp 400 (407)
..+++|+.|+++++ .+..++ +..+..++. ++.|++.+.|
T Consensus 159 ~~~l~~L~~L~L~~N-~l~~l~-------~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 159 GNKLPKLMLLDLSSN-KLKKLP-------LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ---CTTCCEEECCSS-CCCCCC-------HHHHHHSCHHHHTTEECCSSC
T ss_pred cccCCcCCEEECCCC-CCCccC-------HHHhhhccHhhcceEEecCCC
Confidence 46899999999988 444443 122334554 4788888865
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.52 E-value=1.5e-07 Score=79.66 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=28.0
Q ss_pred ceeeeCcccccccccccccccccCCccEEeecCCCcccccccc--ccCCCCcceeEEE
Q 047829 21 KFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQG--ILSTPKLHKVQVI 76 (407)
Q Consensus 21 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~ 76 (407)
+++++++ .+++.+|... ...|++|+++++ .+..++.. +..+++|++|++.
T Consensus 11 ~~l~~s~-~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls 62 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDI----PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELK 62 (192)
T ss_dssp TEEECTT-SCCSSCCSCC----CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECC
T ss_pred CEEEcCC-CCcCcCccCC----CCCCCEEECCCC-cCCccCCccccccCCCCCEEECC
Confidence 4555555 3455555431 246777777776 55555542 5566666666664
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.50 E-value=2.1e-07 Score=78.87 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=19.4
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|++++|.... +++ ..+..+++|+.|++++|
T Consensus 77 l~~L~~L~Ls~N~l~~-i~~-~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRC-IPP-RTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CTTCCEEECCSSCCCB-CCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCccCE-eCH-HHhCCCCCCCEEECCCC
Confidence 5566666666654332 222 23556666666666654
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.48 E-value=3.9e-07 Score=75.90 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=65.2
Q ss_pred CcccEEeccccccccccccCCCcccc-CCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIE-LPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
++|+.|++.++ .+..++. +.. .++|+.|+++++ .++.+. ....+++|+.|+++++.. ..+.+.
T Consensus 19 ~~L~~L~l~~n-~l~~i~~----~~~~~~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N~l-~~~~~~------ 82 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIEN----LGATLDQFDAIDFSDN-EIRKLD---GFPLLRRLKTLLVNNNRI-CRIGEG------ 82 (176)
T ss_dssp TSCEEEECTTS-CCCSCCC----GGGGTTCCSEEECCSS-CCCEEC---CCCCCSSCCEEECCSSCC-CEECSC------
T ss_pred CCceEEEeeCC-CCchhHH----hhhcCCCCCEEECCCC-CCCccc---ccccCCCCCEEECCCCcc-cccCcc------
Confidence 56666666665 3333311 222 336777777664 344441 123466677777766542 111110
Q ss_pred cccccccCCcceEecccccccccccc-cccccccccCCcCceeeccCccccccccc----cccccccCEEEeccC
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWK-ENAESNKVFANLKSPEISECSKLQKLVPA----SWHLENLATLKVSKC 341 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~~L~~L~l~~c 341 (407)
....+++|+.|+++++ .++.++. ..+ ..+++|+.|++++++ +..+|.. +..+++|+.|+++++
T Consensus 83 --~~~~l~~L~~L~L~~N-~i~~~~~~~~l---~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 83 --LDQALPDLTELILTNN-SLVELGDLDPL---ASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp --HHHHCTTCCEEECCSC-CCCCGGGGGGG---GGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred --hhhcCCCCCEEECCCC-cCCcchhhHhh---hcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 0244667777777663 4455443 122 236667777776654 3344443 556667777766654
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=1.6e-07 Score=93.12 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=90.6
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
..|++|+++++ .+..+|. ++.+++|++|++.+ +.+..+|..+..+++|++|+++++. ++.++
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp- 502 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH--------------NRLRALPPALAALRCLEVLQASDNA-LENVD- 502 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS--------------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-
T ss_pred cCceEEEecCC-CCCCCcC-ccccccCcEeecCc--------------ccccccchhhhcCCCCCEEECCCCC-CCCCc-
Confidence 46999999999 8888986 89999999999964 2233466777888999999999986 55444
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEec
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRL 200 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 200 (407)
. + ..+++|+.|++++|.... ++....++.+++|+.|++++|. +..++... ..+...+|+|+.|++
T Consensus 503 ~--l--~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~------~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 G--V--ANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQ------ERLAEMLPSVSSILT 567 (567)
T ss_dssp G--G--TTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSG-GGGSSSCT------THHHHHCTTCSEEEC
T ss_pred c--c--CCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCc-CCCCccHH------HHHHHHCcccCccCC
Confidence 2 2 458999999999986644 3212348899999999999975 33332211 111113688888853
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.45 E-value=1.3e-06 Score=73.86 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=37.6
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|++++ +.++.++...+.. +++|+.|+++++..-...|..+..+++|++|+++++
T Consensus 74 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 74 FEGASHIQELQLGE-NKIKEISNKMFLG---LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTTCTTCCEEECCS-CCCCEECSSSSTT---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCcccCCEEECCC-CcCCccCHHHhcC---CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 34456666666666 3455555444433 667777777765433334555666777777777763
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=1e-07 Score=94.55 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=93.8
Q ss_pred cccCCccEEe-ecCCCccccccc------cccC--CCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEE
Q 047829 41 LEFPSLERVS-VTFCPDMKTFSQ------GILS--TPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQ 111 (407)
Q Consensus 41 ~~~~~L~~L~-l~~c~~l~~lp~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 111 (407)
..+++|+.|+ ++.. .+..++. .+.. ...|++|++.+ +.+..+|. +..+++|++|+
T Consensus 406 ~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~--------------n~l~~lp~-~~~l~~L~~L~ 469 (567)
T 1dce_A 406 QYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAH--------------KDLTVLCH-LEQLLLVTHLD 469 (567)
T ss_dssp HHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTT--------------SCCSSCCC-GGGGTTCCEEE
T ss_pred HHHHhcccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecC--------------CCCCCCcC-ccccccCcEee
Confidence 4577888887 3332 2222221 1111 13588898854 12223444 67779999999
Q ss_pred eccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCC
Q 047829 112 LSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPL 191 (407)
Q Consensus 112 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (407)
++++. ++.++... ..+++|+.|++++|.... ++ .++.+++|+.|++++|. ++.+.... .+. .
T Consensus 470 Ls~N~-l~~lp~~~----~~l~~L~~L~Ls~N~l~~-lp---~l~~l~~L~~L~Ls~N~-l~~~~~p~-------~l~-~ 531 (567)
T 1dce_A 470 LSHNR-LRALPPAL----AALRCLEVLQASDNALEN-VD---GVANLPRLQELLLCNNR-LQQSAAIQ-------PLV-S 531 (567)
T ss_dssp CCSSC-CCCCCGGG----GGCTTCCEEECCSSCCCC-CG---GGTTCSSCCEEECCSSC-CCSSSTTG-------GGG-G
T ss_pred cCccc-ccccchhh----hcCCCCCEEECCCCCCCC-Cc---ccCCCCCCcEEECCCCC-CCCCCCcH-------HHh-c
Confidence 99986 55443322 558999999999986654 43 48999999999999874 33331000 011 3
Q ss_pred CCcccEEeccccccccccccCCC-ccccCCCccEEeE
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTG-NIIELPMFWSLTI 227 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~L~~L~l 227 (407)
+++|+.|++++++ +..++.... ....+|+|+.|++
T Consensus 532 l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 5899999999874 444333222 2334788988853
No 129
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.1e-07 Score=78.43 Aligned_cols=88 Identities=7% Similarity=0.191 Sum_probs=53.5
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccc-ccccc----ccccCEEEeccCcCcccccCchhhh
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV-PASWH----LENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~----~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
+|+.|++++|. ++.. ++..+..+++|+.|++++|..+++.- ..+.. .++|++|++++|..+++.....+ .
T Consensus 62 ~L~~LDLs~~~-Itd~---GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI---GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCC-CCGG---GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCC-ccHH---HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 67888888764 4433 23323347777888887777665421 11122 34677777777777766533333 3
Q ss_pred ccccCCEEEEecccchhh
Q 047829 355 SLVNLERMKITDCKMMEE 372 (407)
Q Consensus 355 ~l~~L~~L~i~~c~~l~~ 372 (407)
.+++|++|++++|+.+.+
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 567777777777776544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.41 E-value=1.5e-06 Score=73.61 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=49.2
Q ss_pred CCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccc
Q 047829 220 PMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKEN 299 (407)
Q Consensus 220 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~ 299 (407)
++|+.|++.+. .++.++ . .+..+++|+.|+++++..- .+.+ ..+..+++|+.|++++ +.++.++...
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~-~~~~l~~L~~L~Ls~N~i~-~i~~--------~~f~~l~~L~~L~Ls~-N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-K-ELSNYKHLTLIDLSNNRIS-TLSN--------QSFSNMTQLLTLILSY-NRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-G-GGGGCTTCCEEECCSSCCC-CCCT--------TTTTTCTTCCEEECCS-SCCCBCCTTT
T ss_pred CCCCEEECCCC-cCchhH-H-HhhcccCCCEEECCCCcCC-EeCH--------hHccCCCCCCEEECCC-CccCEeCHHH
Confidence 46666666653 344433 1 2334566666666554321 1110 1133455556666555 3344444443
Q ss_pred cccccccCCcCceeeccCcccccccc-ccccccccCEEEecc
Q 047829 300 AESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSK 340 (407)
Q Consensus 300 ~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 340 (407)
+.. +++|+.|+++++. ++.+|+ .+..+++|++|++++
T Consensus 98 f~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 98 FDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTT---CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred hCC---CCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 332 5555555555532 334433 234455555555554
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.39 E-value=1.9e-06 Score=71.75 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=54.6
Q ss_pred CCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccc
Q 047829 219 LPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKE 298 (407)
Q Consensus 219 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~ 298 (407)
+++|+.|++.++ +++.+++.. ...+++|++|+++++.. ..+.+. ....+++|+.|++++ +.++.++..
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~--------~~~~l~~L~~L~l~~-N~l~~~~~~ 94 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPHGV-FDKLTQLTKLSLSQNQI-QSLPDG--------VFDKLTKLTILYLHE-NKLQSLPNG 94 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSCC-CCCCTT--------TTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CCCCcEEEeCCC-cccEeCHHH-hcCcccccEEECCCCcc-eEeChh--------HccCCCccCEEECCC-CCccccCHH
Confidence 356777777664 355544332 23466666666665532 211110 123456666666665 344454444
Q ss_pred ccccccccCCcCceeeccCccccccccc-cccccccCEEEeccC
Q 047829 299 NAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKC 341 (407)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 341 (407)
.+.. +++|+.|+++++ .++.+|.. +..+++|++|+++++
T Consensus 95 ~~~~---l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 95 VFDK---LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTT---CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred HhhC---CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 3332 556666666654 34444443 244566666666553
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.30 E-value=3e-07 Score=93.97 Aligned_cols=110 Identities=14% Similarity=0.034 Sum_probs=83.4
Q ss_pred ccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc
Q 047829 40 TLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK 119 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 119 (407)
...++.|+.|+++++ .+..+|..++.+++|++|+|.+ +.+..+|..+..+++|++|+++++. ++
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG--------------NSLTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT--------------SCCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC--------------CcCcccChhhhCCCCCCEEeCcCCc-CC
Confidence 446789999999999 6778998888999999999954 2233466677788999999999987 55
Q ss_pred eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccc
Q 047829 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSL 172 (407)
Q Consensus 120 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (407)
.++... ..+++|+.|.+.+|.. +.++.. ++.+++|+.|++++|.-.
T Consensus 284 ~lp~~~----~~l~~L~~L~L~~N~l-~~lp~~--~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 SLPAEL----GSCFQLKYFYFFDNMV-TTLPWE--FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCSSG----GGGTTCSEEECCSSCC-CCCCSS--TTSCTTCCCEECTTSCCC
T ss_pred ccChhh----cCCCCCCEEECCCCCC-CccChh--hhcCCCccEEeCCCCccC
Confidence 443332 4588999999998855 455543 889999999999987543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=1.6e-06 Score=72.17 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=85.7
Q ss_pred cEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccc
Q 047829 223 WSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES 302 (407)
Q Consensus 223 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~ 302 (407)
+.+++.+ .+++.++... .++|++|+++++.. ..+.+. ....+++|+.|++++ +.++.++...+..
T Consensus 10 ~~l~~~~-~~l~~~p~~~----~~~l~~L~l~~n~l-~~~~~~--------~~~~l~~L~~L~l~~-n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPTGI----PSSATRLELESNKL-QSLPHG--------VFDKLTQLTKLSLSQ-NQIQSLPDGVFDK 74 (177)
T ss_dssp TEEECCS-SCCSSCCTTC----CTTCSEEECCSSCC-CCCCTT--------TTTTCTTCSEEECCS-SCCCCCCTTTTTT
T ss_pred CEEEecC-CCCccCCCCC----CCCCcEEEeCCCcc-cEeCHH--------HhcCcccccEEECCC-CcceEeChhHccC
Confidence 4455444 3456665332 57899999988753 222111 145688999999998 4677777665544
Q ss_pred ccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 303 NKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 303 ~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+++|+.|+++++. ++.+++. +..+++|++|+++++ .+..+++ .....+++|++|++.+++
T Consensus 75 ---l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 ---LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ---CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ---CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCC
Confidence 8899999999864 5555543 577899999999884 6766643 445678899999998774
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.25 E-value=1.6e-05 Score=75.24 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=7.1
Q ss_pred hhccccCCeeEEcc
Q 047829 155 LRCLNNLGWLEVRN 168 (407)
Q Consensus 155 ~~~l~~L~~L~l~~ 168 (407)
+..+++|+.+++..
T Consensus 176 F~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 176 FYYCYNLKKADLSK 189 (401)
T ss_dssp TTTCTTCCEEECTT
T ss_pred hhCcccCCeeecCC
Confidence 44455555555543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=1.1e-05 Score=74.20 Aligned_cols=55 Identities=9% Similarity=-0.065 Sum_probs=27.6
Q ss_pred CcccEEeccccccccccccCCCccccCCCcc-EEeEecCCCCccccCcccccccCCCceeecc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFW-SLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
++|+++.+.+. ++.+.. ..+.++++|+ .+.+.+ +++.+.... +..|++|+.+++.
T Consensus 250 ~~L~~l~l~~n--i~~I~~--~aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l~ 305 (329)
T 3sb4_A 250 KYLLKIKLPHN--LKTIGQ--RVFSNCGRLAGTLELPA--SVTAIEFGA-FMGCDNLRYVLAT 305 (329)
T ss_dssp TTCCEEECCTT--CCEECT--TTTTTCTTCCEEEEECT--TCCEECTTT-TTTCTTEEEEEEC
T ss_pred CCCCEEECCcc--cceehH--HHhhCChhccEEEEEcc--cceEEchhh-hhCCccCCEEEeC
Confidence 45666665542 444322 2244555666 666654 455554433 3346666666653
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=7.1e-05 Score=70.75 Aligned_cols=222 Identities=8% Similarity=0.016 Sum_probs=130.0
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
.+|+.+.+.. +++.+.... | ..+.+|+.+.+.++. +..++. +.+. ..+|+.+.+.. ++..++... +
T Consensus 157 ~~L~~i~lp~--~l~~I~~~a-F--~~c~~L~~l~l~~n~-l~~I~~-~aF~-~~~L~~l~lp~--~l~~I~~~a----F 222 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQLKEDI-F--YYCYNLKKADLSKTK-ITKLPA-STFV-YAGIEEVLLPV--TLKEIGSQA----F 222 (401)
T ss_dssp CCCCEEECCT--TCCEECSST-T--TTCTTCCEEECTTSC-CSEECT-TTTT-TCCCSEEECCT--TCCEECTTT----T
T ss_pred CCceEEEeCC--CccEehHHH-h--hCcccCCeeecCCCc-ceEech-hhEe-ecccCEEEeCC--chheehhhH----h
Confidence 4578887765 355444333 4 236788888887643 333333 3334 47888888863 355544211 1
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
. ..++|+.+.+.+ +++.+.... +.. .+|+.+.+.+ .++.+.... +..|++|+.+.+.+.........
T Consensus 223 ~-----~~~~L~~l~l~~--~l~~I~~~a--F~~-~~L~~i~lp~--~i~~I~~~a-F~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 223 L-----KTSQLKTIEIPE--NVSTIGQEA--FRE-SGITTVKLPN--GVTNIASRA-FYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp T-----TCTTCCCEECCT--TCCEECTTT--TTT-CCCSEEEEET--TCCEECTTT-TTTCTTCCEEEEESSCCCCCTTC
T ss_pred h-----CCCCCCEEecCC--CccCccccc--ccc-CCccEEEeCC--CccEEChhH-hhCCCCCCEEEeCCccccCCccc
Confidence 1 136788888764 355443222 333 5788888853 566665544 44588888888865432100000
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcC
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHG 343 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 343 (407)
.-.......+++|+.+.+.. .+..++...|.. +++|+.+.+.+ +++.+.. .+..+ +|+++.+.+. .
T Consensus 290 ----~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~---c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~ 356 (401)
T 4fdw_A 290 ----MIHPYCLEGCPKLARFEIPE--SIRILGQGLLGG---NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-T 356 (401)
T ss_dssp ----EECTTTTTTCTTCCEECCCT--TCCEECTTTTTT---CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-S
T ss_pred ----EECHHHhhCCccCCeEEeCC--ceEEEhhhhhcC---CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-C
Confidence 00112255678899888884 577888777765 78899998854 3555543 34566 8999999873 4
Q ss_pred cccccCchhhhcc-ccCCEEEEecc
Q 047829 344 LINLLTLSTSESL-VNLERMKITDC 367 (407)
Q Consensus 344 l~~~~~~~~~~~l-~~L~~L~i~~c 367 (407)
+..+... ....+ ..+..+.+-.-
T Consensus 357 ~~~l~~~-~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 357 PPQVFEK-VWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCBCCCS-SCCCSCTTCCEEEECGG
T ss_pred Ccccccc-cccCCCCCccEEEeCHH
Confidence 4444332 23334 46778877653
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.19 E-value=2.6e-08 Score=84.87 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=21.3
Q ss_pred cccCCccEEeecCCCccccccccccCCCCcceeEEEe
Q 047829 41 LEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIV 77 (407)
Q Consensus 41 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 77 (407)
..+++|++|+++++ .+..+| .+..+++|++|++.+
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~ 79 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR 79 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEE
T ss_pred hcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCC
Confidence 35666666666666 455555 555566666666644
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.7e-06 Score=71.26 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=51.9
Q ss_pred CCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccccc-ccCCcCceeeccCccccccc
Q 047829 246 MTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNK-VFANLKSPEISECSKLQKLV 324 (407)
Q Consensus 246 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~ 324 (407)
..|++|++++|. +++ .....+..+++|+.|+|++|..++.-....+.... ..++|++|++++|+++++--
T Consensus 61 ~~L~~LDLs~~~-Itd--------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS--------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC-CCG--------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC-ccH--------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 356777777765 332 12223455677777777777666554333222100 02357777777777665311
Q ss_pred -cccccccccCEEEeccCcCcccc
Q 047829 325 -PASWHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 325 -~~~~~~~~L~~L~l~~c~~l~~~ 347 (407)
..+..+++|++|++++|+.+++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHhcCCCCCEEECCCCCCCCch
Confidence 12345677777777777766653
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.12 E-value=3.4e-06 Score=86.18 Aligned_cols=108 Identities=17% Similarity=0.057 Sum_probs=69.2
Q ss_pred ccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccc
Q 047829 242 SILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 242 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
+..+++|+.|+++++... .+... .+.+++|+.|+|+++ .++.+|.. +..+++|+.|+++++. ++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~---------~~~l~~L~~L~Ls~N-~l~~lp~~----~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISAN---------IFKYDFLTRLYLNGN-SLTELPAE----IKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGG---------GGGCCSCSCCBCTTS-CCSCCCGG----GGGGTTCCEEECTTSC-CS
T ss_pred hccCCCCcEEECCCCCCC-CCChh---------hcCCCCCCEEEeeCC-cCcccChh----hhCCCCCCEEeCcCCc-CC
Confidence 344777888888776532 22111 445777888888773 45566643 2337778888887765 55
Q ss_pred ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 322 KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 322 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.+|..+..+++|++|+++++ .+..++ .. +..+++|+.|+++++.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N-~l~~lp-~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDN-MVTTLP-WE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSS-CCCCCC-SS-TTSCTTCCCEECTTSC
T ss_pred ccChhhcCCCCCCEEECCCC-CCCccC-hh-hhcCCCccEEeCCCCc
Confidence 77777777788888888774 555553 22 5567788888887773
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.05 E-value=6.1e-07 Score=76.24 Aligned_cols=154 Identities=17% Similarity=0.110 Sum_probs=99.1
Q ss_pred CccEEeEecC-CCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccc
Q 047829 221 MFWSLTIENC-PDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKEN 299 (407)
Q Consensus 221 ~L~~L~l~~c-~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~ 299 (407)
.|+...+.+. +.++.++. ....+++|++|+++++.. +.+ +....+++|+.|+++++ .++.++..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~--~~~~l~~L~~L~ls~n~l-~~l----------~~~~~l~~L~~L~l~~n-~l~~l~~~- 88 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNI-EKI----------SSLSGMENLRILSLGRN-LIKKIENL- 88 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH--HHHHTTTCSEEECSEEEE-SCC----------CCHHHHTTCCEEEEEEE-EECSCSSH-
T ss_pred chheeEeccccCcHhhhhH--HHhcCCCCCEEECCCCCC-ccc----------cccccCCCCCEEECCCC-Ccccccch-
Confidence 4555555442 22333322 245689999999988753 322 12667899999999984 56666643
Q ss_pred cccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccc--
Q 047829 300 AESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQ-- 377 (407)
Q Consensus 300 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~-- 377 (407)
...+++|+.|+++++ .+..+| .+..+++|++|+++++ .+..++.......+++|++|++.+|+ +...+...
T Consensus 89 ---~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~ 161 (198)
T 1ds9_A 89 ---DAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNA 161 (198)
T ss_dssp ---HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTT
T ss_pred ---hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccc
Confidence 223689999999987 466666 5788999999999984 56554322345678999999999984 43332000
Q ss_pred -cCCcccceeEecccceEec
Q 047829 378 -VGEEAEDCIVFRKLEYLGL 396 (407)
Q Consensus 378 -~g~~~~~~~~~~~L~~L~l 396 (407)
..-....+..+++|++|+-
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHHHHHHHCSSCSEECC
T ss_pred hHHHHHHHHHhCCCcEEECC
Confidence 0000112567888998873
No 141
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=2.9e-06 Score=79.06 Aligned_cols=57 Identities=19% Similarity=-0.030 Sum_probs=29.6
Q ss_pred cCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhh--ccccCCeeEEc
Q 047829 102 IGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLR--CLNNLGWLEVR 167 (407)
Q Consensus 102 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~l~~L~~L~l~ 167 (407)
..+++|+.|.++++.+++ ++....++|+.|.+..|....+ ....+. .+|+|+.|+++
T Consensus 169 ~~~P~L~~L~L~g~~~l~-------l~~~~~~~L~~L~L~~~~l~~~--~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-------IGKKPRPNLKSLEIISGGLPDS--VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-------CCSCBCTTCSEEEEECSBCCHH--HHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCce-------eccccCCCCcEEEEecCCCChH--HHHHHHHccCCCCcEEEEe
Confidence 445677777777653222 1111256777777766543211 111122 56777777765
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.99 E-value=1e-05 Score=66.80 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=62.6
Q ss_pred cCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhcc
Q 047829 278 FPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESL 356 (407)
Q Consensus 278 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 356 (407)
.++++.|++++ +.++.++...+.. +++|+.|+++++. ++.+|+. +..+++|++|++++ +.+..+++ .....+
T Consensus 29 ~~~l~~L~L~~-N~i~~~~~~~~~~---l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYD-NQITKLEPGVFDR---LTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND-NQLKSIPR-GAFDNL 101 (170)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTT---CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTC
T ss_pred CCCCcEEEcCC-CcCCccChhhhcC---cccCCEEECCCCC-cCccChhhccCCCCCCEEECCC-CccCEeCH-HHhcCC
Confidence 47899999998 5677776655544 8899999999864 6666654 46889999999988 56777643 445678
Q ss_pred ccCCEEEEecc
Q 047829 357 VNLERMKITDC 367 (407)
Q Consensus 357 ~~L~~L~i~~c 367 (407)
++|+.|++.++
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 89999998875
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.97 E-value=1.2e-05 Score=66.56 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=64.0
Q ss_pred cCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhcc
Q 047829 278 FPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESL 356 (407)
Q Consensus 278 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 356 (407)
.++|+.|++++ +.+..++...+.. +++|+.|+++++ +++.+|.. +..+++|++|++++ +.+..+++ .....+
T Consensus 32 ~~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~l 104 (174)
T 2r9u_A 32 PTDKQRLWLNN-NQITKLEPGVFDH---LVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPR-GAFDNL 104 (174)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTC
T ss_pred CCCCcEEEeCC-CCccccCHHHhcC---CcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-CccceeCH-HHhccc
Confidence 37899999998 4677776655544 889999999986 56777765 46789999999988 56777643 445678
Q ss_pred ccCCEEEEeccc
Q 047829 357 VNLERMKITDCK 368 (407)
Q Consensus 357 ~~L~~L~i~~c~ 368 (407)
++|+.|++.+++
T Consensus 105 ~~L~~L~L~~N~ 116 (174)
T 2r9u_A 105 KSLTHIYLYNNP 116 (174)
T ss_dssp TTCSEEECCSSC
T ss_pred cCCCEEEeCCCC
Confidence 899999998763
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=2.7e-05 Score=72.50 Aligned_cols=14 Identities=7% Similarity=-0.133 Sum_probs=10.2
Q ss_pred hhccccCCeeEEcc
Q 047829 155 LRCLNNLGWLEVRN 168 (407)
Q Consensus 155 ~~~l~~L~~L~l~~ 168 (407)
+.++++|+.|.|..
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 45678888888754
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.79 E-value=7.4e-05 Score=61.52 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=39.4
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|++++ +.++.++...+.. +++|+.|+++++ .++.+++ .+..+++|++|+++++
T Consensus 50 ~~~l~~L~~L~Ls~-N~l~~l~~~~f~~---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 50 FDRLTQLTRLDLDN-NQLTVLPAGVFDK---LTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCSEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCC-CCcCccChhhccC---CCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 34456666777766 3566666554443 677777777765 3555554 3567778888888763
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.77 E-value=9.1e-05 Score=61.25 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=42.9
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|++++ +.++.++...+.. +++|+.|+++++ .++.+|+. +..+++|++|+++++
T Consensus 53 ~~~l~~L~~L~Ls~-N~l~~i~~~~~~~---l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 53 FDHLVNLQQLYFNS-NKLTAIPTGVFDK---LTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred hcCCcCCCEEECCC-CCCCccChhHhCC---cchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 44567777777777 4666666654443 778888888875 45666654 667888888888874
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.69 E-value=0.0024 Score=60.08 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=54.1
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+.+|+.+.+.+ .+..++...|.. +.+|+.+++.+ .++.+.. .+..+.+|+.+.+.. .++.+.. ...
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~---c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFES---CTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA-NAF 362 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTT---CTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT-TTB
T ss_pred cccccccccccccc--ccceechhhhcC---CCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehH-HHh
Confidence 33466788887764 466777666654 77888888853 3555543 345678888888864 3666533 345
Q ss_pred hccccCCEEEEec
Q 047829 354 ESLVNLERMKITD 366 (407)
Q Consensus 354 ~~l~~L~~L~i~~ 366 (407)
.++++|+.+.+..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 5788888888754
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.59 E-value=0.00011 Score=68.06 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=63.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
+..+++|+.|+|++.+.++.++...+.. +++|+.|+++++ .++.+++ .+..+++|++|++++ +.+..+++ ...
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~---l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~ 100 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRG---LGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSW-KTV 100 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCS---CCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCS-TTT
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhcc---ccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCH-HHc
Confidence 5556789999998657788888766654 889999999987 4666554 567889999999988 67777643 333
Q ss_pred hccccCCEEEEecc
Q 047829 354 ESLVNLERMKITDC 367 (407)
Q Consensus 354 ~~l~~L~~L~i~~c 367 (407)
..++ |+.|++.++
T Consensus 101 ~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 101 QGLS-LQELVLSGN 113 (347)
T ss_dssp CSCC-CCEEECCSS
T ss_pred ccCC-ceEEEeeCC
Confidence 3344 888988765
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.52 E-value=1.7e-05 Score=74.20 Aligned_cols=168 Identities=13% Similarity=-0.016 Sum_probs=98.3
Q ss_pred CCcccEEeccccccccccccCC--Cccc-cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFT--GNII-ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQI 268 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~--~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 268 (407)
+++|+.|+++++. +....... ..+. ..++|+.|++++|. ++......+...+++|++|++++|..-..-...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~--- 145 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD--- 145 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH---
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH---
Confidence 4789999998875 32211000 0111 23689999998874 554433344555778999999888532211110
Q ss_pred ccccccc-cccCCcceEecccccccccccccccc-cccccCCcCceeeccCcccc----ccccccccccccCEEEeccCc
Q 047829 269 QHLFDEK-VTFPQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPEISECSKLQ----KLVPASWHLENLATLKVSKCH 342 (407)
Q Consensus 269 ~~~~~~~-~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~c~ 342 (407)
-.... ...++|+.|++++| .++......+. .+...++|+.|++++|.--. .+...+...++|++|++++|
T Consensus 146 --L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N- 221 (372)
T 3un9_A 146 --LRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN- 221 (372)
T ss_dssp --HHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-
T ss_pred --HHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-
Confidence 00001 13578999999986 34432222111 12347789999999876321 23344566778999999885
Q ss_pred CcccccCchhh---hccccCCEEEEeccc
Q 047829 343 GLINLLTLSTS---ESLVNLERMKITDCK 368 (407)
Q Consensus 343 ~l~~~~~~~~~---~~l~~L~~L~i~~c~ 368 (407)
.+.+.....+. ...++|++|++++|+
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 45543222222 345889999999884
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.39 E-value=4.8e-05 Score=71.21 Aligned_cols=168 Identities=16% Similarity=0.035 Sum_probs=97.6
Q ss_pred ecccceeeeCcccccccccccccc----cccCCccEEeecCCCcccc--ccccccCCCCcceeEEEeecccccccccCcc
Q 047829 17 FSELKFLILDYLPRLTSFCLENYT----LEFPSLERVSVTFCPDMKT--FSQGILSTPKLHKVQVIVKEEGELYHREGNL 90 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 90 (407)
.++|+.|+++++. +......... ...+.|++|++++| .+.. +..-...+++|++|++.++. -.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~---------l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS---------LG 139 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC---------CC
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC---------CC
Confidence 5789999999974 5433222111 12369999999999 4432 21112335689999996521 11
Q ss_pred hhhHHHHHHhh-cCCCCccEEEeccCCCcceeccCCCCCc--cccCCceEEEEecCCCCCcCC---ccchhhccccCCee
Q 047829 91 NSTIQKCYKEM-IGFRDIWYLQLSYFPRLKEIWHGQALPV--SFFNNLCKLVVDDCTNMSSAI---PVNLLRCLNNLGWL 164 (407)
Q Consensus 91 ~~~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L 164 (407)
+.....+.+.+ ...++|++|++++|. +....... +.. ...++|+.|++++|... +.. ....+...++|+.|
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~l~-~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV-LMEGLAGNTSVTHLSLLHTGLG-DEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH-HHHHHHTCSSCCEEECTTSSCH-HHHHHHHHHHGGGCSCCCEE
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH-HHHHHhcCCCcCEEeCCCCCCC-cHHHHHHHHHHhcCCCcCeE
Confidence 22344454444 356889999999986 43211110 100 23578999999998643 211 12335677899999
Q ss_pred EEccccccceeeccCCccccccccCCCCCcccEEeccccc
Q 047829 165 EVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLP 204 (407)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (407)
++++|. +...+... +...+. ..++|++|+++++.
T Consensus 217 ~Ls~N~-i~~~g~~~----l~~~L~-~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 217 NVAYNG-AGDTAALA----LARAAR-EHPSLELLHLYFNE 250 (372)
T ss_dssp ECCSSC-CCHHHHHH----HHHHHH-HCSSCCEEECTTSS
T ss_pred ECCCCC-CCHHHHHH----HHHHHH-hCCCCCEEeccCCC
Confidence 999874 33221100 111111 23789999999874
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.35 E-value=0.0041 Score=58.39 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=16.4
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
+..+.+|+.+.+.. .++.+.... +..+..|+.+.+
T Consensus 181 F~~c~~L~~i~l~~--~~~~I~~~~-F~~~~~L~~i~~ 215 (394)
T 4fs7_A 181 FSGCGKLKSIKLPR--NLKIIRDYC-FAECILLENMEF 215 (394)
T ss_dssp TTTCTTCCBCCCCT--TCCEECTTT-TTTCTTCCBCCC
T ss_pred ccCCCCceEEEcCC--CceEeCchh-hccccccceeec
Confidence 44556666666642 233333222 223555555544
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.31 E-value=0.00047 Score=63.60 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=74.7
Q ss_pred EeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccccc
Q 047829 225 LTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNK 304 (407)
Q Consensus 225 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~ 304 (407)
+++.+.++++.+|. ...+++|+.|++++...+..+.+. .+..+++|+.|+|++ +.+..++...+..
T Consensus 13 v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~--------~~~~l~~L~~L~l~~-N~l~~~~~~~~~~-- 78 (347)
T 2ifg_A 13 LRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELR--------DLRGLGELRNLTIVK-SGLRFVAPDAFHF-- 78 (347)
T ss_dssp EECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGG--------GSCSCCCCSEEECCS-SCCCEECTTGGGS--
T ss_pred EEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChh--------HhccccCCCEEECCC-CccceeCHHHhcC--
Confidence 44444336777765 445889999999875555544322 266799999999999 4788888776654
Q ss_pred ccCCcCceeeccCccccccccccccccccCEEEeccCcCcc
Q 047829 305 VFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLI 345 (407)
Q Consensus 305 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 345 (407)
+++|+.|+++++ ++..+|+.......|+.|++.++ .+.
T Consensus 79 -l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 79 -TPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN-PLH 116 (347)
T ss_dssp -CSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS-CCC
T ss_pred -CcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCC-Ccc
Confidence 899999999985 56777765444344999999874 444
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.70 E-value=0.29 Score=45.60 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=56.2
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+++|+.+.+. ..+..++...|.. +.+|+.+.+.+ .++.+.. .+..+.+|+++.+.. .++.+.. ..+
T Consensus 284 F~~c~~L~~i~l~--~~i~~I~~~aF~~---c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~-~aF 353 (394)
T 4gt6_A 284 FMNCPALQDIEFS--SRITELPESVFAG---CISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPE-SAF 353 (394)
T ss_dssp TTTCTTCCEEECC--TTCCEECTTTTTT---CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCG-GGG
T ss_pred cccccccccccCC--CcccccCceeecC---CCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhH-hHh
Confidence 3456788888876 3566777776665 78888888853 3454443 356678899998853 4555533 345
Q ss_pred hccccCCEEEEecc
Q 047829 354 ESLVNLERMKITDC 367 (407)
Q Consensus 354 ~~l~~L~~L~i~~c 367 (407)
.++.+|+.+.+.+.
T Consensus 354 ~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 354 SNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEEESSC
T ss_pred hCCCCCCEEEECCc
Confidence 67888998888765
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.48 E-value=0.19 Score=46.54 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=38.6
Q ss_pred ccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhc
Q 047829 277 TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 277 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
.+.+|+.+.+.. .+..++...+.. +++|+.+.+.+. .++.+++ .+..+.+|+.+.+.. .++.+.. ....+
T Consensus 261 ~~~~l~~i~l~~--~i~~i~~~aF~~---c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~ 331 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVPYLLCSG---CSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV-YAFKN 331 (379)
T ss_dssp TCTTCCEEEECC--CCSEECTTTTTT---CTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTT
T ss_pred eeehhccccccc--cceecccccccc---cccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH-HHhhC
Confidence 345566665543 344555544443 566666666532 2333332 234556666666642 3444422 22334
Q ss_pred cccCCEEEE
Q 047829 356 LVNLERMKI 364 (407)
Q Consensus 356 l~~L~~L~i 364 (407)
+.+|+.+.+
T Consensus 332 C~~L~~i~i 340 (379)
T 4h09_A 332 CKALSTISY 340 (379)
T ss_dssp CTTCCCCCC
T ss_pred CCCCCEEEE
Confidence 555555544
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.36 E-value=0.18 Score=47.09 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=63.7
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+.+|+.+.+.+ .+..+....+.. +++|+.+.+.+ .++.++. .+..+.+|+++.+.. .++.+.. ..+
T Consensus 261 F~~c~~L~~i~lp~--~~~~I~~~aF~~---c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF 330 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSIGTGAFMN---CPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-DAF 330 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEECTTTTTT---CTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTT
T ss_pred eeecccccEEeccc--ccceecCccccc---ccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-hHh
Confidence 34466777777764 344566555544 77888888753 3555554 345678999999963 4666643 345
Q ss_pred hccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 354 ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
.++.+|+.+.+.+ .++.+. ......|.+|+.+++.
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~-------~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIP-------ESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCC-------GGGGTTCTTCCEEEES
T ss_pred hCCCCCCEEEECc--ccCEEh-------HhHhhCCCCCCEEEEC
Confidence 5788999988843 233332 1223456677777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.27 E-value=0.0025 Score=53.00 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=34.6
Q ss_pred ccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCC
Q 047829 42 EFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 116 (407)
..+.|++|++++|..+. .+...+...++|++|++.++ .--+.....+.+.+...++|++|+++++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n---------~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT---------RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS---------CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC---------CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 45677777777763332 23334455566777766431 11112233444444455667777776665
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.77 E-value=0.01 Score=49.22 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=58.1
Q ss_pred ecccceeeeCcccccccccccc---cccccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccC
Q 047829 17 FSELKFLILDYLPRLTSFCLEN---YTLEFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREG 88 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~ 88 (407)
.++|+.|+++++..+....... .....+.|++|++++|. +. .+...+...++|++|++.++ .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N---------~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN---------F 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS---------C
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC---------c
Confidence 5789999999974565433221 12345899999999994 44 24444556688999999641 1
Q ss_pred cchhhHHHHHHhhcCCCCccEEEe--ccCC
Q 047829 89 NLNSTIQKCYKEMIGFRDIWYLQL--SYFP 116 (407)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~L~~L~l--~~~~ 116 (407)
.-+.....+.+.+...++|++|++ +++.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 122345556666666677777777 4444
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.11 E-value=1 Score=41.39 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=61.5
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
+..+..|+.+.+.. .++.+.... +..+.+|+.+.+... +..+ .......+.+|+.+.+.. ..++.+
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~a-F~~~~~l~~i~l~~~--i~~i--------~~~aF~~c~~L~~i~l~~-~~i~~I 301 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFL-LQNCTALKTLNFYAK--VKTV--------PYLLCSGCSNLTKVVMDN-SAIETL 301 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTT-TTTCTTCCEEEECCC--CSEE--------CTTTTTTCTTCCEEEECC-TTCCEE
T ss_pred ccCCccceEEEcCC--CccEeCccc-cceeehhcccccccc--ceec--------cccccccccccccccccc-ccccee
Confidence 34556677777643 344443332 334666777666332 1111 111244577899888875 456777
Q ss_pred cccccccccccCCcCceeeccCcccccccc-ccccccccCEEEec
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVS 339 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~ 339 (407)
+...|.. +.+|+.+.+.+ .++.+.. .+..+.+|+++.+.
T Consensus 302 ~~~aF~~---c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 302 EPRVFMD---CVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTTTTT---CTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred hhhhhcC---CCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 7777665 78899888853 3455543 34566777777774
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.07 E-value=0.015 Score=51.20 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=26.5
Q ss_pred cCCcCceeeccCcccc---ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 306 FANLKSPEISECSKLQ---KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~---~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+++|+.|+++++. +. .++..+..+++|+.|++++ +.+.++........+ +|+.|.+.+++
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCc
Confidence 4455555555432 22 2223334556666666655 344443111111112 56666666554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.65 E-value=0.054 Score=47.63 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=20.3
Q ss_pred cCCceEEEEecCCCCCcCCc-cchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIP-VNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|++++|.... +.. ...+..+++|+.|++++|
T Consensus 169 l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCC
Confidence 5666666666655432 111 123456667777777664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.88 E-value=1.3 Score=36.80 Aligned_cols=92 Identities=8% Similarity=0.083 Sum_probs=41.7
Q ss_pred cCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccc-cccccCCcCceeeccCcccc--
Q 047829 245 HMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPEISECSKLQ-- 321 (407)
Q Consensus 245 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~-- 321 (407)
-++|++|.++++..+.+- +...-...+..-.+|+.|+|+++ .++.-.-..+. .+..-..|+.|+++++.--.
T Consensus 40 n~~L~~L~L~~nn~igd~----ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKE----RIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp CSSCCEEECTTCCSSCHH----HHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred CCCccEEECCCCCCCCHH----HHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 456777777654333221 00011122334457777777763 33332211111 12234567777776654211
Q ss_pred --ccccccccccccCEEEeccC
Q 047829 322 --KLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 322 --~l~~~~~~~~~L~~L~l~~c 341 (407)
.+-..+..-+.|++|+++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 12222333455777777643
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=70.80 E-value=3.5 Score=31.46 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCccEEeecCCCccccccccc-cCCCCcceeEEEe
Q 047829 44 PSLERVSVTFCPDMKTFSQGI-LSTPKLHKVQVIV 77 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~ 77 (407)
++|++|+|+++ .+..+|.++ ..+++|++|+|.+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCS
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecC
Confidence 57999999999 888888764 5588999999965
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.88 E-value=5.8 Score=30.17 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
.+|+.|+|++|... .+ +.+.+..+++|+.|++.+|+
T Consensus 31 ~~l~~L~Ls~N~l~-~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLT-AL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCS-SC-CTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCC-cc-ChhhhhhccccCEEEecCCC
Confidence 46777777776543 23 33456667777777777653
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.71 E-value=4.8 Score=33.24 Aligned_cols=114 Identities=7% Similarity=0.018 Sum_probs=55.7
Q ss_pred CCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCc
Q 047829 44 PSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRL 118 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 118 (407)
+.|+.|+++++..+. .+-..+..-..|+.|+|.++.- -+.....+-+.+..-+.|++|+++++. +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i---------gd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI---------SDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC---------BHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC---------ChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 667777777642332 1333334445677777743111 112222344444555678888888766 2
Q ss_pred ceec---cCCCCCccccCCceEEEEecCCC--CCcC---CccchhhccccCCeeEEccc
Q 047829 119 KEIW---HGQALPVSFFNNLCKLVVDDCTN--MSSA---IPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 119 ~~~~---~~~~~~~~~l~~L~~L~l~~~~~--~~~~---~~~~~~~~l~~L~~L~l~~~ 169 (407)
.+.. +..++. .=..|+.|.+.++.. +.+. .....+..-+.|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~--~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTL--VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTT--TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHh--hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2100 000011 114588888876432 2210 01123556677888877654
Done!