BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047830
         (313 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/222 (54%), Positives = 150/222 (67%), Gaps = 10/222 (4%)

Query: 25  HHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRDRNENNIANAMEEGEELAVATGEGG 84
           HH Q Q Q   +   Q   Q+ +           R+ + +N  +  ++G   +       
Sbjct: 24  HHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSN-KDHHQQGRPDSDPNTSSS 82

Query: 85  EITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGIC 144
              +RPRGRP GSKNK KPPII+TRDS NALRSHV+E++ G DI++SVS +ARRR RG+ 
Sbjct: 83  APGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVS 142

Query: 145 ILSGTGTVTNVTLRQPASP---------GAVVTLHGRFEILSLAGSFLPPPAPPAASGLT 195
           +L G GTV+NVTLRQP +P         G VVTLHGRFEILSL G+ LPPPAPP A GL+
Sbjct: 143 VLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLS 202

Query: 196 IYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPL 237
           I+LAGGQGQVVGGSVV PL+AS PV++MAASF NA +ERLP+
Sbjct: 203 IFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPI 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,598,615
Number of Sequences: 539616
Number of extensions: 6022842
Number of successful extensions: 76869
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 267
Number of HSP's that attempted gapping in prelim test: 40511
Number of HSP's gapped (non-prelim): 26876
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)