Query 047830
Match_columns 313
No_of_seqs 249 out of 522
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 100.0 2.5E-28 8.4E-33 209.9 16.8 126 107-239 10-137 (154)
2 2p6y_A Hypothetical protein VC 100.0 3.8E-28 1.3E-32 206.0 16.4 119 114-239 1-121 (142)
3 2dt4_A Hypothetical protein PH 100.0 8.5E-29 2.9E-33 209.4 10.8 120 116-239 10-132 (143)
4 2h6l_A Hypothetical protein; N 100.0 1.9E-28 6.4E-33 208.0 10.4 121 115-239 9-132 (146)
5 3htn_A Putative DNA binding pr 99.9 2.4E-27 8.1E-32 202.8 11.5 120 116-239 16-139 (149)
6 3hwu_A Putative DNA-binding pr 99.9 2.2E-25 7.5E-30 190.0 11.7 121 116-239 13-136 (147)
7 2ezd_A High mobility group pro 97.5 3.8E-05 1.3E-09 48.6 2.2 18 85-102 2-19 (26)
8 1xv2_A ALDC, hypothetical prot 56.0 19 0.00064 32.9 5.9 106 126-237 97-214 (237)
9 4i95_A Putative uncharacterize 39.6 16 0.00056 31.3 2.6 34 142-177 37-70 (142)
10 1t3g_A X-linked interleukin-1 28.0 36 0.0012 28.3 2.9 27 122-148 51-77 (159)
11 3mes_A Choline kinase; malaria 23.4 60 0.002 31.2 3.8 67 93-160 15-90 (424)
12 1fyx_A TOLL-like receptor 2; b 21.9 45 0.0015 27.3 2.3 27 122-148 44-70 (149)
13 4gzv_A Hypothetical protein; A 21.7 51 0.0017 28.2 2.6 34 142-177 37-70 (142)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.96 E-value=2.5e-28 Score=209.86 Aligned_cols=126 Identities=21% Similarity=0.384 Sum_probs=110.8
Q ss_pred eecCCCCCcceEEEEecCCCcHHHHHHHHHHhcCc-cEEEEEEEeeeceEEEeCCCCCCCeEEeeceeeEEeeeecccCC
Q 047830 107 ITRDSANALRSHVMEIANGCDIMDSVSNFARRRQR-GICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPP 185 (313)
Q Consensus 107 it~~s~~~mr~hVIrL~~GeDIvesI~~FArr~~~-av~VLSgiGAVsnVTLRqp~~~~~~vtleG~FEILSLSGnisp~ 185 (313)
++.++++.+|+|++||++|+||+++|.+||+++++ ++||+|++|+|++|+||+++... +++++|+|||+||+|||++.
T Consensus 10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~ 88 (154)
T 2hx0_A 10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT 88 (154)
T ss_dssp --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence 45678889999999999999999999999999986 67888999999999999998654 68899999999999999983
Q ss_pred CCCCCCCeEEEEEeCCCCcEEceecCC-ceeeeeeEEEEEeeccccceeeccCCC
Q 047830 186 PAPPAASGLTIYLAGGQGQVVGGSVVG-PLVASGPVVIMAASFGNAAYERLPLEE 239 (313)
Q Consensus 186 ~~~~~~~HLHISLAg~dGqVvGGHL~G-~LIAAg~V~VvaaSF~n~~yeRlP~e~ 239 (313)
..||||+|++.+|+|+||||++ ++|. .+++|++..|....|+|+|+++
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~e 137 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVR-TTLELVIGELPALTFSRQPCAI 137 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEE-EEEEEEEEECTTEEEEEEECTT
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEE-EEEEEEEEEccCceEEEecCCC
Confidence 5999999999999999999996 4554 5677777889999999999765
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.96 E-value=3.8e-28 Score=206.00 Aligned_cols=119 Identities=21% Similarity=0.351 Sum_probs=106.1
Q ss_pred CcceEEEEecCCCcHHHHHHHHHHhcCc-cEEEEEEEeeeceEEEeCCCCCCCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830 114 ALRSHVMEIANGCDIMDSVSNFARRRQR-GICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAAS 192 (313)
Q Consensus 114 ~mr~hVIrL~~GeDIvesI~~FArr~~~-av~VLSgiGAVsnVTLRqp~~~~~~vtleG~FEILSLSGnisp~~~~~~~~ 192 (313)
.||+|++||++|+||+++|.+||+++++ ++||++++|+|++|+||+++... +++++|+|||+||+|||++. ..
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~ 74 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC 74 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence 3899999999999999999999999986 67888999999999999998644 68899999999999999983 59
Q ss_pred eEEEEEeCCCCcEEceecCC-ceeeeeeEEEEEeeccccceeeccCCC
Q 047830 193 GLTIYLAGGQGQVVGGSVVG-PLVASGPVVIMAASFGNAAYERLPLEE 239 (313)
Q Consensus 193 HLHISLAg~dGqVvGGHL~G-~LIAAg~V~VvaaSF~n~~yeRlP~e~ 239 (313)
||||+|+|.||+|+||||++ ++| ..+++|++..|.+..|+|+|+++
T Consensus 75 HlHisl~~~~G~v~GGHl~~g~~V-~~t~Ev~i~~~~~~~~~R~~D~e 121 (142)
T 2p6y_A 75 HLHIAVADAQGRVWGGHLLEGNLI-NTTAELMIHHYPQHHFTREFDPN 121 (142)
T ss_dssp EEEEEEECTTSCEEEEEECTTCEE-CC-EEEEEEECTTEEEEEEEETT
T ss_pred EEEEEEECCCCCEEccccCCCCeE-EEEEEEEEEEccCCeEEEeeCCC
Confidence 99999999999999999996 455 45688888899999999999765
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.95 E-value=8.5e-29 Score=209.44 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=106.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCCC---CCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASP---GAVVTLHGRFEILSLAGSFLPPPAPPAAS 192 (313)
Q Consensus 116 r~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~~---~~~vtleG~FEILSLSGnisp~~~~~~~~ 192 (313)
|+|++||++|+||+++|.+||+++++..|+++++|+|++|+||+++.. |..++++|+|||+||+|||++.++ +++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g-~p~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG-EPFV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT-EEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC-Ccee
Confidence 799999999999999999999999988888899999999999998653 567899999999999999999654 4689
Q ss_pred eEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCC
Q 047830 193 GLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239 (313)
Q Consensus 193 HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~ 239 (313)
||||+|+|.||+|+||||+..++++.| |++.+|.+..|+|+| ++
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~v~t~E--v~i~~~~~~~~~R~~-~e 132 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGEVFVAE--IFLQELKGEKIERKP-TK 132 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEEEE--EEEEEEEESCCEEBC-CT
T ss_pred eEEEEEECCCCCEeCCCCCCCceEEEE--EEEEEcCCCeEEEeC-CC
Confidence 999999999999999999955566544 577889999999999 44
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.95 E-value=1.9e-28 Score=207.97 Aligned_cols=121 Identities=19% Similarity=0.251 Sum_probs=108.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCCC---CCeEEeeceeeEEeeeecccCCCCCCCC
Q 047830 115 LRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASP---GAVVTLHGRFEILSLAGSFLPPPAPPAA 191 (313)
Q Consensus 115 mr~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~~---~~~vtleG~FEILSLSGnisp~~~~~~~ 191 (313)
-++|++||++|+||+++|.+||+++++..|+|+++|+|++|+||+++.. |.+++++|+|||+||+|||++.++ +++
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg-~p~ 87 (146)
T 2h6l_A 9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS-KPF 87 (146)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT-EEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC-Cce
Confidence 3699999999999999999999999988777799999999999998754 468999999999999999999654 468
Q ss_pred CeEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCC
Q 047830 192 SGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239 (313)
Q Consensus 192 ~HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~ 239 (313)
.||||+|+ .||+|+||||++.+| .+++|++.+|.+..|+|+|+++
T Consensus 88 ~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 88 CHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred eeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 99999999 999999999997766 4777888899999999999765
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=2.4e-27 Score=202.78 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=104.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCC---CCCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS---PGAVVTLHGRFEILSLAGSFLPPPAPPAAS 192 (313)
Q Consensus 116 r~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~---~~~~vtleG~FEILSLSGnisp~~~~~~~~ 192 (313)
|.|++||++|+||+++|.+||+++++..|+++++|+|++|+|++++. .|..++++|+|||+||+|||++.++ .++.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG-~p~~ 94 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE-QVYL 94 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT-EEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC-CceE
Confidence 89999999999999999999999999988889999999999999764 3678899999999999999999754 5689
Q ss_pred eEEEEEeCCCCcEEceecCCcee-eeeeEEEEEeeccccceeeccCCC
Q 047830 193 GLTIYLAGGQGQVVGGSVVGPLV-ASGPVVIMAASFGNAAYERLPLEE 239 (313)
Q Consensus 193 HLHISLAg~dGqVvGGHL~G~LI-AAg~V~VvaaSF~n~~yeRlP~e~ 239 (313)
||||+|++.+|+|+||||+...| .+.||+|. .+.. .++|.++++
T Consensus 95 HlH~sl~~~~G~v~gGHl~~g~V~~t~Ei~i~--~~~~-~~~R~~D~~ 139 (149)
T 3htn_A 95 HLHITVGRSDYSALAGHLLSAIQNGAGEFVVE--DYSE-RISRTYNPD 139 (149)
T ss_dssp EEEEEEECTTSBEEEEEEEEEEEEEEEEEEEE--ECCS-CCEEEEETT
T ss_pred EEEEEEECCCCCEEeEEeCCCEEEEEEEEEEE--EcCC-eeEEeeCCc
Confidence 99999999999999999996544 35555554 5666 789988765
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.92 E-value=2.2e-25 Score=190.01 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=103.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCCC---CCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASP---GAVVTLHGRFEILSLAGSFLPPPAPPAAS 192 (313)
Q Consensus 116 r~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~~---~~~vtleG~FEILSLSGnisp~~~~~~~~ 192 (313)
+.+++||++|+||+++|.+||+++++..++++++|++++++|++++.. |...+++ ++||+||+|||++.+ +.++.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G~p~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-GKPSI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-TEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-CCceE
Confidence 679999999999999999999999999999999999999999987642 5667888 899999999999866 46799
Q ss_pred eEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCC
Q 047830 193 GLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239 (313)
Q Consensus 193 HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~ 239 (313)
||||+|++.+|+|+||||+...|.+++++|++..+. ..+.|.++++
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~ 136 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE 136 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence 999999999999999999965555444555555554 5999988664
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.52 E-value=3.8e-05 Score=48.56 Aligned_cols=18 Identities=61% Similarity=1.003 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 047830 85 EITRRPRGRPAGSKNKPK 102 (313)
Q Consensus 85 ~~~rrpRGRP~GSknKpk 102 (313)
...|||||||.|||||.-
T Consensus 2 ptpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CSCCCCSSCCTTCCCCSC
T ss_pred CCCcCCCCCcCcccccCc
Confidence 357999999999999953
No 8
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=56.04 E-value=19 Score=32.88 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCC---CCCe----EEeeceeeEEeeeecc----cCCCC-CCCCCe
Q 047830 126 CDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS---PGAV----VTLHGRFEILSLAGSF----LPPPA-PPAASG 193 (313)
Q Consensus 126 eDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~---~~~~----vtleG~FEILSLSGni----sp~~~-~~~~~H 193 (313)
+++-+.|.+.. .....|.+-.-|..++|+.|-.-. +|.. +.-+-.|++--.+|++ +|.-- +-...+
T Consensus 97 ~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~G 174 (237)
T 1xv2_A 97 DVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAG 174 (237)
T ss_dssp HHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSE
T ss_pred HHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCce
Confidence 33444444433 345678889999999999997431 2322 1233345665666665 34221 122345
Q ss_pred EEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccC
Q 047830 194 LTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPL 237 (313)
Q Consensus 194 LHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~ 237 (313)
+|+-+-+.|.+ +||||....+..+.|. ++.|.+... +||.
T Consensus 175 ~HlHFisdDr~-~GGHVldf~~~~~~~~--~~~~~~~~l-~lP~ 214 (237)
T 1xv2_A 175 FHIHFADDERA-YGGHVLDFEVDDVVVE--IQNFETFQQ-HFPV 214 (237)
T ss_dssp EEEEEEETTSS-CEEEEEEEEEEEEEEE--EEECSEEEE-ECCT
T ss_pred eEEEEEcCCCC-CCcceEEEEecceEEE--EeecccEEE-ECCC
Confidence 56656655544 8999999877655444 444444433 6776
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=39.64 E-value=16 Score=31.30 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=29.7
Q ss_pred cEEEEEEEeeeceEEEeCCCCCCCeEEeeceeeEEe
Q 047830 142 GICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILS 177 (313)
Q Consensus 142 av~VLSgiGAVsnVTLRqp~~~~~~vtleG~FEILS 177 (313)
..=|||.-|+..|++++. ...++++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~--~~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP--GTDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT--TSCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec--CCCcEEEEeEEEEecC
Confidence 567899999999999983 3689999999999987
No 10
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=28.00 E-value=36 Score=28.32 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=24.3
Q ss_pred ecCCCcHHHHHHHHHHhcCccEEEEEE
Q 047830 122 IANGCDIMDSVSNFARRRQRGICILSG 148 (313)
Q Consensus 122 L~~GeDIvesI~~FArr~~~av~VLSg 148 (313)
+.+|++|++.|.+..++-.+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 678999999999999888899999874
No 11
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=23.39 E-value=60 Score=31.22 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCeeee-cCCCCCcceEEEEecCCCcHHHHHHHHHHhc-----C---ccEEEEEEEeeeceEEEeCC
Q 047830 93 RPAGSKNKPKPPIIIT-RDSANALRSHVMEIANGCDIMDSVSNFARRR-----Q---RGICILSGTGTVTNVTLRQP 160 (313)
Q Consensus 93 RP~GSknKpk~p~~it-~~s~~~mr~hVIrL~~GeDIvesI~~FArr~-----~---~av~VLSgiGAVsnVTLRqp 160 (313)
-|+|||||.+-|-.|. -++-+.++-++.+...--|. +.|..+|++. . -.+.|---.|-++|.+.+.-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~-~~l~~l~~~~~p~w~~~~~~~~~v~~lsGG~TN~~y~v~ 90 (424)
T 3mes_A 15 VPRGSKKKKEMPFPNKKIELGDKLSESIRSFSTITDT-EIIIGICRKNIPGWKEINESYIEVKQIFSGLTNQLFVVS 90 (424)
T ss_dssp -----------------------------------CH-HHHHHHHHHHSTTCTTCCGGGEEEEEECCCSSSEEEEEE
T ss_pred ccCCccccccCCCcceeecccccchHHHHHhccCCCH-HHHHHHHHHHcCccccCCCCceEEEEcCCCcccceEEEE
Confidence 3678988887775543 34556777777666555454 4566777665 2 12455555688888887763
No 12
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=21.92 E-value=45 Score=27.26 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred ecCCCcHHHHHHHHHHhcCccEEEEEE
Q 047830 122 IANGCDIMDSVSNFARRRQRGICILSG 148 (313)
Q Consensus 122 L~~GeDIvesI~~FArr~~~av~VLSg 148 (313)
+.+|++|.+.|.+-.++-.+.++|||-
T Consensus 44 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~ 70 (149)
T 1fyx_A 44 FIHGKWIIDNIIDSIEKSHKTVFVLSE 70 (149)
T ss_dssp CCSSSCHHHHHHHHHHHEEEEEEEECH
T ss_pred CCCchhHHHHHHHHHHHcCEEEEEeCc
Confidence 778999999999999988899999875
No 13
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=21.72 E-value=51 Score=28.24 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.2
Q ss_pred cEEEEEEEeeeceEEEeCCCCCCCeEEeeceeeEEe
Q 047830 142 GICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILS 177 (313)
Q Consensus 142 av~VLSgiGAVsnVTLRqp~~~~~~vtleG~FEILS 177 (313)
..=|||.-|+..|+++.. ...++++..|.|||+|
T Consensus 37 ~~KIlS~DgtF~N~~m~~--~~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIP--GADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT--TSCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeC--CCCcEEEEeEEEEecC
Confidence 466889999999999844 2478899999999987
Done!