BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047831
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 42 RNTIQQYPVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNSNHGESLFWG 101
+N+ Q Y +A++G+ P+ W LA+ A + N + DC+L+HS + GE+L G
Sbjct: 1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA--GENLAKG 58
Query: 102 SGKNWKSXXXXXXXXXEQGYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGC 151
G ++ E+ YN+ TN C K C YTQ+VWR S+++GC
Sbjct: 59 GG-DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGC 107
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 64 LQWRKKLANFASWWV-------NQQRRDCDLVHSN-SNHGESLFWGSGKNWKSXXXXXXX 115
+ W LA A W N + + +H N ++ GE+++ GS +
Sbjct: 43 MTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNW 102
Query: 116 XXEQGYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGC 151
E Y+ KT C + C YTQ+VW S KVGC
Sbjct: 103 YDEIQDYDFKTRICKKV--CGHYTQVVWADSYKVGC 136
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 61 LPPLQWRKKLANFASWWVNQQRRDCDLVHSNSNHGESLFWG--------SGKNWKSXXXX 112
+P L W +LA A W NQ C H + E G SGKN +
Sbjct: 76 MPNLTWDPELATIAQRWANQ----CTFEHDACRNVERFAVGQNIAATSSSGKNKSTPNEM 131
Query: 113 XXX-XXEQGYYNHKTNSCSRYKDCL-----RYTQMVWRQSLKVGC 151
E ++++ S D + YTQ+VW ++ K+GC
Sbjct: 132 ILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGC 176
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 14/14 (100%)
Query: 138 YTQMVWRQSLKVGC 151
YTQMVW++++K+GC
Sbjct: 135 YTQMVWQETVKLGC 148
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 28 INFHQDVYLKGSPQRNTIQQY-PVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCD 86
++F+ + + Q+ + + + R++ + ++W + A+ A W N C
Sbjct: 2 VDFNSESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CS 57
Query: 87 LVHSNSN--------HGESLFWGS-GKNWKSXXXXXXXXXEQGYYNHKTNSCSRYKDCLR 137
L HS N GES++ S + W + Y N
Sbjct: 58 LNHSPDNLRVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTG--H 115
Query: 138 YTQMVWRQSLKVGC 151
YTQ+VW Q+ + GC
Sbjct: 116 YTQIVWYQTYRAGC 129
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 IRALFSCALLGIFLLFLQSHCHNLAINFHQDVYLKGSPQRNTIQQYPV 50
+RA+ +L + + H HNL + Q ++L+G Q++ Q+Y +
Sbjct: 866 MRAVERFVILNVVDNAWKEHLHNLDV-LRQGIFLRGYGQKDPFQEYKI 912
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 34 VYLKGSPQRNTIQQYPVTRKIVKAKLGLPPLQWRK 68
+ L G P N +Y + +K+ K K QW+K
Sbjct: 242 ILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKK 276
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 34 VYLKGSPQRNTIQQYPVTRKIVKAKLGLPPLQWRK 68
+ L G P N +Y + +K+ K K QW+K
Sbjct: 219 ILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKK 253
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 34 VYLKGSPQRNTIQQYPVTRKIVKAKLGLPPLQWRK 68
+ L G P N +Y + +K+ K K QW+K
Sbjct: 219 ILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKK 253
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 34 VYLKGSPQRNTIQQYPVTRKIVKAKLGLPPLQWRK 68
+ L G P N +Y + +K+ K K QW+K
Sbjct: 243 ILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKK 277
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 28 INFHQDVYLKGSPQRNTIQQY-PVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCD 86
++F+ + + Q+ + + + R++ + ++W + A+ A W N C
Sbjct: 2 VDFNSESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CS 57
Query: 87 LVHSNSN--------HGESLFWGS-GKNWKSXXXXXXXXXEQGYYNHKTNSCSRYKDCLR 137
L HS N GES++ S + W + Y +
Sbjct: 58 LNHSPDNLRVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTG--H 115
Query: 138 YTQMVWRQSLKVGC 151
YTQ+VW Q+ + GC
Sbjct: 116 YTQIVWYQTYRAGC 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,282
Number of Sequences: 62578
Number of extensions: 163736
Number of successful extensions: 367
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 15
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)