Query 047831
Match_columns 152
No_of_seqs 170 out of 1056
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 1.4E-33 3E-38 196.2 11.0 107 46-152 2-108 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 3.1E-32 6.8E-37 187.8 9.9 104 44-152 2-105 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 6.7E-32 1.4E-36 186.5 7.8 108 43-152 1-111 (132)
4 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 1.9E-31 4.2E-36 185.6 9.3 104 45-152 1-113 (136)
5 cd05385 SCP_GLIPR-1_like SCP_G 100.0 3E-31 6.4E-36 186.3 10.2 104 43-152 1-121 (144)
6 cd00168 SCP SCP: SCP-like extr 100.0 1.6E-30 3.5E-35 177.5 9.1 100 46-152 2-106 (122)
7 smart00198 SCP SCP / Tpx-1 / A 100.0 1.7E-30 3.8E-35 181.9 9.1 105 44-152 2-123 (144)
8 cd05383 SCP_CRISP SCP_CRISP: S 100.0 3.1E-30 6.6E-35 180.0 9.5 104 44-152 2-118 (138)
9 cd05380 SCP_euk SCP_euk: SCP-l 100.0 3.8E-29 8.3E-34 174.4 7.8 103 46-152 2-125 (144)
10 KOG3017 Defense-related protei 99.9 3.5E-27 7.5E-32 176.6 5.2 108 41-152 38-165 (225)
11 TIGR02909 spore_YkwD uncharact 99.9 3.2E-21 7E-26 132.7 8.3 92 42-152 2-110 (127)
12 PF00188 CAP: Cysteine-rich se 99.8 7.4E-19 1.6E-23 116.9 5.1 101 49-152 1-107 (124)
13 cd05379 SCP_bacterial SCP_bact 99.7 6.7E-17 1.5E-21 109.2 7.0 88 46-152 2-106 (122)
14 COG2340 Uncharacterized protei 99.5 4E-14 8.7E-19 105.0 7.1 78 41-121 77-172 (207)
15 PF07172 GRP: Glycine rich pro 87.8 0.48 1.1E-05 30.8 2.3 19 1-19 1-19 (95)
16 PF12273 RCR: Chitin synthesis 82.4 1.2 2.6E-05 30.5 2.3 21 51-71 21-41 (130)
17 PRK15396 murein lipoprotein; P 74.4 5.1 0.00011 25.1 3.2 23 1-24 1-23 (78)
18 PRK10598 lipoprotein; Provisio 72.3 6.2 0.00014 28.9 3.7 50 4-64 2-51 (186)
19 PF03207 OspD: Borrelia outer 65.8 14 0.0003 26.7 4.3 57 3-59 1-67 (254)
20 COG3017 LolB Outer membrane li 56.8 23 0.00049 26.4 4.2 24 1-24 1-24 (206)
21 PF11054 Surface_antigen: Spor 55.7 36 0.00079 26.0 5.1 76 44-124 34-135 (254)
22 TIGR03042 PS_II_psbQ_bact phot 53.6 23 0.00049 24.8 3.6 20 4-24 2-21 (142)
23 TIGR03044 PS_II_psb27 photosys 49.7 47 0.001 23.0 4.5 28 38-65 31-58 (135)
24 PRK09973 putative outer membra 49.2 24 0.00052 22.5 2.9 15 43-57 38-52 (85)
25 PRK10081 entericidin B membran 47.7 36 0.00078 19.2 3.1 20 3-22 2-22 (48)
26 PRK10540 lipoprotein; Provisio 46.8 29 0.00062 21.4 2.9 23 1-23 3-25 (72)
27 PRK11372 lysozyme inhibitor; P 44.8 23 0.00049 23.6 2.4 20 1-24 1-20 (109)
28 PRK11548 outer membrane biogen 44.4 36 0.00078 22.6 3.4 22 1-24 1-22 (113)
29 COG1019 Predicted nucleotidylt 39.5 21 0.00045 25.4 1.6 19 47-65 104-122 (158)
30 PF08557 Lipid_DES: Sphingolip 39.3 54 0.0012 17.6 2.9 27 38-64 12-38 (39)
31 PRK10802 peptidoglycan-associa 38.8 35 0.00076 24.5 2.8 24 1-24 1-24 (173)
32 KOG4527 Cytochrome c oxidase, 37.4 34 0.00074 21.0 2.1 33 69-101 6-41 (76)
33 COG1512 Beta-propeller domains 35.4 1.7E+02 0.0036 22.8 6.2 19 61-80 71-89 (271)
34 PRK10936 TMAO reductase system 35.2 60 0.0013 25.5 3.9 17 3-19 1-17 (343)
35 COG2854 Ttg2D ABC-type transpo 34.5 1.1E+02 0.0023 22.8 4.7 24 1-24 1-24 (202)
36 cd02164 PPAT_CoAS phosphopante 34.2 42 0.00092 23.3 2.5 23 43-65 97-119 (143)
37 PF02402 Lysis_col: Lysis prot 33.5 9.3 0.0002 21.1 -0.7 20 4-24 2-21 (46)
38 PF08139 LPAM_1: Prokaryotic m 33.1 58 0.0012 15.7 2.1 7 4-10 8-14 (25)
39 PLN02388 phosphopantetheine ad 32.9 31 0.00066 25.1 1.7 23 43-65 117-139 (177)
40 TIGR01165 cbiN cobalt transpor 32.8 46 0.001 21.4 2.3 10 1-10 1-10 (91)
41 PF04272 Phospholamban: Phosph 32.1 89 0.0019 17.4 3.0 13 8-20 35-47 (52)
42 PHA02291 hypothetical protein 31.2 49 0.0011 22.0 2.3 24 1-24 1-24 (132)
43 KOG4439 RNA polymerase II tran 29.5 68 0.0015 28.7 3.4 46 38-83 778-845 (901)
44 PF12869 tRNA_anti-like: tRNA_ 28.7 20 0.00044 24.4 0.2 21 1-21 1-22 (144)
45 PRK15205 long polar fimbrial p 28.3 42 0.00092 23.9 1.8 13 1-13 1-13 (176)
46 PF12071 DUF3551: Protein of u 28.3 68 0.0015 20.2 2.5 11 3-13 1-11 (82)
47 PRK12450 foldase protein PrsA; 27.5 73 0.0016 25.0 3.1 24 1-24 2-25 (309)
48 PF10731 Anophelin: Thrombin i 27.3 73 0.0016 18.9 2.3 16 7-22 5-20 (65)
49 COG3026 RseB Negative regulato 25.9 1.1E+02 0.0023 24.3 3.6 14 47-60 29-42 (320)
50 PRK14864 putative biofilm stre 25.8 28 0.00062 23.0 0.4 19 1-23 3-21 (104)
51 PF13124 DUF3963: Protein of u 25.7 1.1E+02 0.0025 16.1 2.8 16 3-18 20-35 (40)
52 PRK01622 OxaA-like protein pre 25.7 77 0.0017 24.3 2.9 24 1-24 2-25 (256)
53 COG4594 FecB ABC-type Fe3+-cit 25.5 71 0.0015 24.9 2.6 24 1-24 1-24 (310)
54 COG4783 Putative Zn-dependent 25.5 4.2E+02 0.0092 22.5 8.0 50 54-103 56-119 (484)
55 COG5633 Predicted periplasmic 24.5 40 0.00087 22.9 1.0 21 3-26 1-21 (123)
56 PF00879 Defensin_propep: Defe 24.5 86 0.0019 18.0 2.2 14 3-16 1-14 (52)
57 PRK09738 small toxic polypepti 23.6 57 0.0012 18.7 1.4 21 3-23 5-25 (52)
58 PF05984 Cytomega_UL20A: Cytom 22.9 1E+02 0.0022 19.6 2.5 17 1-17 1-17 (100)
59 PRK10838 spr outer membrane li 22.8 1.1E+02 0.0023 22.5 3.1 22 3-24 7-28 (190)
60 PF07082 DUF1350: Protein of u 22.1 1.9E+02 0.004 22.3 4.3 81 39-120 147-233 (250)
61 PF03343 SART-1: SART-1 family 22.1 57 0.0012 28.2 1.7 20 49-68 5-24 (613)
62 PF05968 Bacillus_PapR: Bacill 22.1 82 0.0018 17.5 1.7 17 3-19 1-17 (48)
63 COG5567 Predicted small peripl 21.4 1.2E+02 0.0026 17.7 2.4 14 4-17 2-15 (58)
64 PF12729 4HB_MCP_1: Four helix 20.8 1.3E+02 0.0028 20.2 3.1 12 1-12 2-13 (181)
65 PRK02919 oxaloacetate decarbox 20.5 2.3E+02 0.0051 17.7 4.6 14 47-60 69-82 (82)
66 PLN00064 photosystem II protei 20.5 3.3E+02 0.0072 19.5 5.0 25 41-65 63-87 (166)
67 PRK09759 small toxic polypepti 20.1 84 0.0018 17.9 1.6 23 1-23 1-23 (50)
68 COG5455 Predicted integral mem 20.1 80 0.0017 21.7 1.7 21 2-22 1-21 (129)
69 TIGR01294 P_lamban phospholamb 20.0 1.8E+02 0.0039 16.2 2.9 13 8-20 35-47 (52)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.4e-33 Score=196.22 Aligned_cols=107 Identities=49% Similarity=0.999 Sum_probs=99.2
Q ss_pred hhHHHHHhHHHHhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCCCccceeeeccCCCCCHHHHHHHHHhccccCCCC
Q 047831 46 QQYPVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNSNHGESLFWGSGKNWKSADAVAAWAAEQGYYNHK 125 (152)
Q Consensus 46 ~~il~~hN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~ 125 (152)
++||+.||.+|+.++++||+||++|+..||.||+.|+..|...|+...+||||+++.....++.++|+.|++|..+|++.
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYD 81 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCC
Confidence 57999999999999999999999999999999999988899999887899999987654457899999999999999999
Q ss_pred CCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 126 TNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 126 ~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
.+.|..+..++|||||||++|++||||
T Consensus 82 ~~~~~~~~~~~hftq~vw~~t~~vGCa 108 (136)
T cd05381 82 SNTCAAGKMCGHYTQVVWRNTTRVGCA 108 (136)
T ss_pred CCCcCCCccchHHHHHHHHhcCEeceE
Confidence 988887788999999999999999997
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=99.98 E-value=3.1e-32 Score=187.82 Aligned_cols=104 Identities=28% Similarity=0.449 Sum_probs=94.6
Q ss_pred HHhhHHHHHhHHHHhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCCCccceeeeccCCCCCHHHHHHHHHhccccCC
Q 047831 44 TIQQYPVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNSNHGESLFWGSGKNWKSADAVAAWAAEQGYYN 123 (152)
Q Consensus 44 ~~~~il~~hN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~ 123 (152)
+++.||+.||.+|+.+|++||+||++|+..||.||++|+..|.+.|++..+|||++.++. ++.++|+.|++|..+|+
T Consensus 2 ~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~---~~~~~v~~W~~e~~~y~ 78 (129)
T cd05384 2 FASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP---SGTSAVDAWYDEIEDYD 78 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC---CHHHHHHHHHhhhhhCC
Confidence 588999999999999999999999999999999999887777789998889999987653 78999999999999999
Q ss_pred CCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 124 HKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 124 ~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
|..+.+ +..++|||||||++|++||||
T Consensus 79 ~~~~~~--~~~~~h~tqmvw~~t~~vGCa 105 (129)
T cd05384 79 YSNPGF--SEATGHFTQLVWKSTTQVGCA 105 (129)
T ss_pred CCCCCC--CCcccchhhhhhhccceeeeE
Confidence 987654 367899999999999999997
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=99.97 E-value=6.7e-32 Score=186.51 Aligned_cols=108 Identities=27% Similarity=0.433 Sum_probs=96.4
Q ss_pred hHHhhHHHHHhHHHHhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCC-CccceeeeccC--CCCCHHHHHHHHHhcc
Q 047831 43 NTIQQYPVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS-NHGESLFWGSG--KNWKSADAVAAWAAEQ 119 (152)
Q Consensus 43 ~~~~~il~~hN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~-~~GeNi~~~~~--~~~~~~~~v~~W~~e~ 119 (152)
+++++||+.||++|+.+||+||+||++|+..||.||++|+..+.+.|++. .+|||++++.. ....+.++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 36889999999999999999999999999999999998887777889876 59999998764 3458899999999999
Q ss_pred ccCCCCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 120 GYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 120 ~~y~~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
.+|++..+.+ +..+||||||||++|++||||
T Consensus 81 ~~y~~~~~~~--~~~~gh~tqmvw~~t~~vGCa 111 (132)
T cd05382 81 KKYDFNKPGF--SSKTGHFTQVVWKSSTELGVG 111 (132)
T ss_pred ccCCCCCCCC--CCCCCCeEEeEecCCCceeeE
Confidence 9999985543 367999999999999999997
No 4
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.97 E-value=1.9e-31 Score=185.62 Aligned_cols=104 Identities=29% Similarity=0.575 Sum_probs=93.7
Q ss_pred HhhHHHHHhHHHHhCC-----CCCCcccHHHHHHHHHHHHHhccCCCccCCCC----CccceeeeccCCCCCHHHHHHHH
Q 047831 45 IQQYPVTRKIVKAKLG-----LPPLQWRKKLANFASWWVNQQRRDCDLVHSNS----NHGESLFWGSGKNWKSADAVAAW 115 (152)
Q Consensus 45 ~~~il~~hN~~R~~~~-----~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~----~~GeNi~~~~~~~~~~~~~v~~W 115 (152)
++.||+.||.+|+.++ |++|+||++|+..||.||+ +|.+.|++. .+|||++...++..++.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 3679999999999985 5579999999999999999 899988763 69999998765556799999999
Q ss_pred HhccccCCCCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 116 AAEQGYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 116 ~~e~~~y~~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
|+|..+|+|..+.|..+..++|||||||++|++||||
T Consensus 77 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa 113 (136)
T cd05559 77 NNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCG 113 (136)
T ss_pred HHHHHhcCCCCCCCCCCCcccchHHHHHhccCccceE
Confidence 9999999999888887788999999999999999997
No 5
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.97 E-value=3e-31 Score=186.30 Aligned_cols=104 Identities=33% Similarity=0.650 Sum_probs=92.6
Q ss_pred hHHhhHHHHHhHHHHhC-----CCCCCcccHHHHHHHHHHHHHhccCCCccCCCC------------CccceeeeccCCC
Q 047831 43 NTIQQYPVTRKIVKAKL-----GLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS------------NHGESLFWGSGKN 105 (152)
Q Consensus 43 ~~~~~il~~hN~~R~~~-----~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~------------~~GeNi~~~~~~~ 105 (152)
+++++||+.||.+|+.+ +|++|+||++|+..||.||+ +|.+.|++. .+||||+++....
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~ 76 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI 76 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCC
Confidence 47889999999999999 58899999999999999999 898888742 4899998776545
Q ss_pred CCHHHHHHHHHhccccCCCCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 106 WKSADAVAAWAAEQGYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 106 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
+++.++|+.||+|..+|+|..+.|. ..+||||||||++|++||||
T Consensus 77 ~~~~~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa 121 (144)
T cd05385 77 FSPKNAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCA 121 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceE
Confidence 6889999999999999999887775 57999999999999999997
No 6
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.97 E-value=1.6e-30 Score=177.49 Aligned_cols=100 Identities=33% Similarity=0.515 Sum_probs=90.0
Q ss_pred hhHHHHHhHHHHhC-CCCCCcccHHHHHHHHHHHHHhccCCCccCCCC----CccceeeeccCCCCCHHHHHHHHHhccc
Q 047831 46 QQYPVTRKIVKAKL-GLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS----NHGESLFWGSGKNWKSADAVAAWAAEQG 120 (152)
Q Consensus 46 ~~il~~hN~~R~~~-~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~----~~GeNi~~~~~~~~~~~~~v~~W~~e~~ 120 (152)
++||+.||.+|+.+ +|+||+||++|+..||.||+ +|.+.|++. .+||||+++..+ .++..+|+.|++|..
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~~ 76 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEIK 76 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHHH
Confidence 56999999999999 99999999999999999999 899999875 599999987643 589999999999999
Q ss_pred cCCCCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 121 YYNHKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 121 ~y~~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
+|+|.++.+ +..++||+||||++|++||||
T Consensus 77 ~y~~~~~~~--~~~~~h~~qmvw~~s~~vGca 106 (122)
T cd00168 77 NYNFGQPGF--SSGTGHYTQVVWKNTTKIGCG 106 (122)
T ss_pred hCCCCCCCC--CCCccchhhhhcccCCeeeeE
Confidence 999985443 467899999999999999997
No 7
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.97 E-value=1.7e-30 Score=181.86 Aligned_cols=105 Identities=30% Similarity=0.526 Sum_probs=94.3
Q ss_pred HHhhHHHHHhHHHHhCC-----------CCCCcccHHHHHHHHHHHHHhccCCCccCCCC-CccceeeeccC----CCCC
Q 047831 44 TIQQYPVTRKIVKAKLG-----------LPPLQWRKKLANFASWWVNQQRRDCDLVHSNS-NHGESLFWGSG----KNWK 107 (152)
Q Consensus 44 ~~~~il~~hN~~R~~~~-----------~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~-~~GeNi~~~~~----~~~~ 107 (152)
.++.||+.||.+|+.++ |+||+||++|+..||.||+ .|...|+.. .+|||+++..+ ....
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~ 77 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITY 77 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchh
Confidence 47889999999999998 9999999999999999999 899989875 69999987653 2346
Q ss_pred HHHHHHHHHhccccCCCCCCCCCC-CCCChhHHHHHHHhcCccccC
Q 047831 108 SADAVAAWAAEQGYYNHKTNSCSR-YKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 108 ~~~~v~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvW~~t~~vGCa 152 (152)
+..+|+.||+|..+|++..+.|.. +..++|||||||++|++||||
T Consensus 78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa 123 (144)
T smart00198 78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCG 123 (144)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceE
Confidence 888999999999999999888775 678999999999999999997
No 8
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=99.97 E-value=3.1e-30 Score=179.95 Aligned_cols=104 Identities=25% Similarity=0.450 Sum_probs=92.0
Q ss_pred HHhhHHHHHhHHHHhCC-----CCCCcccHHHHHHHHHHHHHhccCCCccCCCC--------CccceeeeccCCCCCHHH
Q 047831 44 TIQQYPVTRKIVKAKLG-----LPPLQWRKKLANFASWWVNQQRRDCDLVHSNS--------NHGESLFWGSGKNWKSAD 110 (152)
Q Consensus 44 ~~~~il~~hN~~R~~~~-----~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~--------~~GeNi~~~~~~~~~~~~ 110 (152)
.++.||+.||.+|+.+. |++|+||++|+..||.||+ +|.+.|++. .+|||++.... ..+..+
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~~-~~~~~~ 76 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSSY-PRSWSD 76 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccCC-CCCHHH
Confidence 47889999999999974 5579999999999999999 899888853 47999987653 247889
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 111 AVAAWAAEQGYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 111 ~v~~W~~e~~~y~~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
+|+.||+|..+|+|+.+.|..+..|+|||||||++|++||||
T Consensus 77 av~~W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa 118 (138)
T cd05383 77 VIQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCA 118 (138)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceE
Confidence 999999999999999887777788999999999999999997
No 9
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.96 E-value=3.8e-29 Score=174.35 Aligned_cols=103 Identities=32% Similarity=0.548 Sum_probs=90.8
Q ss_pred hhHHHHHhHHHHhC------------CCCCCcccHHHHHHHHHHHHHhccCCCccCCCC----CccceeeeccCCC----
Q 047831 46 QQYPVTRKIVKAKL------------GLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS----NHGESLFWGSGKN---- 105 (152)
Q Consensus 46 ~~il~~hN~~R~~~------------~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~----~~GeNi~~~~~~~---- 105 (152)
+.||+.||.+|+.+ +|++|+||++|+..||.||+ +|...|+.. .+|||++......
T Consensus 2 ~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~ 77 (144)
T cd05380 2 QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTVE 77 (144)
T ss_pred cHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCHH
Confidence 57999999999999 79999999999999999999 898888864 6999999876432
Q ss_pred CCHHHHHHHHHhccccCCCCCC-CCCCCCCChhHHHHHHHhcCccccC
Q 047831 106 WKSADAVAAWAAEQGYYNHKTN-SCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 106 ~~~~~~v~~W~~e~~~y~~~~~-~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
..+.++|+.||+|..+|++... .+..+..++|||||||++|++||||
T Consensus 78 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa 125 (144)
T cd05380 78 ELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCA 125 (144)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceE
Confidence 3588999999999999999875 4445678999999999999999997
No 10
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=99.94 E-value=3.5e-27 Score=176.57 Aligned_cols=108 Identities=35% Similarity=0.627 Sum_probs=96.4
Q ss_pred ChhHHhhHHHHHhHHHHhCC-----CCCCcccHHHHHHHHHHHHHhccCCCccCCC------CCccceeeeccCCC----
Q 047831 41 QRNTIQQYPVTRKIVKAKLG-----LPPLQWRKKLANFASWWVNQQRRDCDLVHSN------SNHGESLFWGSGKN---- 105 (152)
Q Consensus 41 ~~~~~~~il~~hN~~R~~~~-----~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~------~~~GeNi~~~~~~~---- 105 (152)
..+++++|++.||.+|..++ |++|+||++|+..||.||+ +|.+.|+. ..+|||++++.+..
T Consensus 38 ~~~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~ 113 (225)
T KOG3017|consen 38 HNNLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLS 113 (225)
T ss_pred cHHHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCcc
Confidence 34789999999999999998 9999999999999999999 78777763 47899999876531
Q ss_pred --CCHHHHHHHHHhccccCCCCCCCCCC---CCCChhHHHHHHHhcCccccC
Q 047831 106 --WKSADAVAAWAAEQGYYNHKTNSCSR---YKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 106 --~~~~~~v~~W~~e~~~y~~~~~~~~~---~~~~~hftqmvW~~t~~vGCa 152 (152)
.++..+++.|+.|...|++.++.|.. +..|||||||||++|++||||
T Consensus 114 ~~~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCg 165 (225)
T KOG3017|consen 114 LDTSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCG 165 (225)
T ss_pred ccccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceecee
Confidence 46788999999999999999999985 789999999999999999997
No 11
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.85 E-value=3.2e-21 Score=132.74 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred hhHHhhHHHHHhHHHHhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCC-----------------CccceeeeccCC
Q 047831 42 RNTIQQYPVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS-----------------NHGESLFWGSGK 104 (152)
Q Consensus 42 ~~~~~~il~~hN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~-----------------~~GeNi~~~~~~ 104 (152)
+++++++++.||++|..+|++||+||+.|++.|+.||++|+.++.++|+.+ .+||||+++..
T Consensus 2 ~~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~~- 80 (127)
T TIGR02909 2 TAEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGNS- 80 (127)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccCC-
Confidence 356889999999999999999999999999999999999999999999852 34999997654
Q ss_pred CCCHHHHHHHHHhccccCCCCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 105 NWKSADAVAAWAAEQGYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 105 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
++..+|+.|+++. +|+.+|+|.+.++||||
T Consensus 81 --~~~~~v~~W~~S~----------------gH~~nil~~~~~~~Gvg 110 (127)
T TIGR02909 81 --TVEAVHNAWMNSP----------------GHRANILNPNYTEIGVG 110 (127)
T ss_pred --CHHHHHHHHHcCH----------------hHHHHHcCCCcCeEeEE
Confidence 7899999999752 79999999999999996
No 12
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.76 E-value=7.4e-19 Score=116.86 Aligned_cols=101 Identities=26% Similarity=0.377 Sum_probs=69.2
Q ss_pred HHHHhHHH-HhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCCCccceeeeccCCCCC---HHHHHHHHHhccccCCC
Q 047831 49 PVTRKIVK-AKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNSNHGESLFWGSGKNWK---SADAVAAWAAEQGYYNH 124 (152)
Q Consensus 49 l~~hN~~R-~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~~~GeNi~~~~~~~~~---~~~~v~~W~~e~~~y~~ 124 (152)
|+.||++| ...+++||+||++|+..|+.+|++|+......| ..|++.......... ....++.|+.+...+++
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCANSNSLSH---DSGENGSQSSRFGSYSDAQVTAVENWYSESKNYNF 77 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCSSEETTE---ESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEET
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhhhccccc---ccCCCCccccccccccchhhHHHHHHHhccccccc
Confidence 78999999 889999999999999999999994433222222 467787655432211 11129999999999988
Q ss_pred CC--CCCCCCCCChhHHHHHHHhcCccccC
Q 047831 125 KT--NSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 125 ~~--~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
.. ........++||+||+|.++++||||
T Consensus 78 ~~~~~~~~~~~~~~h~~~ll~~~~~~iGca 107 (124)
T PF00188_consen 78 QNQSIFNSWMNSPGHFTNLLWPNTTRIGCA 107 (124)
T ss_dssp TCSTEESSTTSTCHHHHHHT-TT--EEEEE
T ss_pred ccchhhhccCCchhhhhhhhcCCCCEEEEE
Confidence 72 22223467899999999999999997
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.69 E-value=6.7e-17 Score=109.20 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=77.9
Q ss_pred hhHHHHHhHHHHhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCC-----------------CccceeeeccCCCCCH
Q 047831 46 QQYPVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS-----------------NHGESLFWGSGKNWKS 108 (152)
Q Consensus 46 ~~il~~hN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~-----------------~~GeNi~~~~~~~~~~ 108 (152)
+.+++.+|.+|..+|++||+||++|...|+.||++|+....+.|.+. .+|||++.+.. ++
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~---~~ 78 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS---TA 78 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC---CH
Confidence 46899999999999999999999999999999999998777888753 13999987654 79
Q ss_pred HHHHHHHHhccccCCCCCCCCCCCCCChhHHHHHHHhcCccccC
Q 047831 109 ADAVAAWAAEQGYYNHKTNSCSRYKDCLRYTQMVWRQSLKVGCL 152 (152)
Q Consensus 109 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftqmvW~~t~~vGCa 152 (152)
.++++.|+++ .+|+.+|+|.+.+++|||
T Consensus 79 ~~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg 106 (122)
T cd05379 79 EAAVDGWMNS----------------PGHRANILNPDYTEVGVG 106 (122)
T ss_pred HHHHHHHhCC----------------HhHHHHHcCCCcceeeEE
Confidence 9999999976 379999999999999997
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.51 E-value=4e-14 Score=105.00 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=69.6
Q ss_pred ChhHHhhHHHHHhHHHHhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCC-----------------CccceeeeccC
Q 047831 41 QRNTIQQYPVTRKIVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS-----------------NHGESLFWGSG 103 (152)
Q Consensus 41 ~~~~~~~il~~hN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~-----------------~~GeNi~~~~~ 103 (152)
.+++..++++.+|++|..++++||+||.+|+..|+.|+++|+.+..++|..+ .+||||++++.
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~ 156 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN 156 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence 4678889999999999999999999999999999999999999999999863 48999998864
Q ss_pred CCCCH-HHHHHHHHhcccc
Q 047831 104 KNWKS-ADAVAAWAAEQGY 121 (152)
Q Consensus 104 ~~~~~-~~~v~~W~~e~~~ 121 (152)
+. +.+|+.|++...+
T Consensus 157 ---~~~~~~v~~Wl~S~gH 172 (207)
T COG2340 157 ---DPPEAAVDGWLNSPGH 172 (207)
T ss_pred ---CchHHHHHHhcCChhh
Confidence 44 8999999988744
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=87.78 E-value=0.48 Score=30.82 Aligned_cols=19 Identities=32% Similarity=0.383 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 047831 1 MEIRALFSCALLGIFLLFL 19 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~ 19 (152)
|.-|.+|+..+++.++||+
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 6666655444433333333
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=82.40 E-value=1.2 Score=30.45 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=14.6
Q ss_pred HHhHHHHhCCCCCCcccHHHH
Q 047831 51 TRKIVKAKLGLPPLQWRKKLA 71 (152)
Q Consensus 51 ~hN~~R~~~~~~~L~wd~~La 71 (152)
.||+.|++.|+.|+.-..-+.
T Consensus 21 ~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 21 CHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHhhcCCCCcCCceecC
Confidence 468888888988886544333
No 17
>PRK15396 murein lipoprotein; Provisional
Probab=74.39 E-value=5.1 Score=25.07 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|+.++++...+++.++ |++.|+.
T Consensus 1 m~~~kl~l~av~ls~~-LLaGCAs 23 (78)
T PRK15396 1 MNRTKLVLGAVILGST-LLAGCSS 23 (78)
T ss_pred CchhHHHHHHHHHHHH-HHHHcCC
Confidence 6555666666555554 4445544
No 18
>PRK10598 lipoprotein; Provisional
Probab=72.31 E-value=6.2 Score=28.89 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhhhhhccCCCChhHHhhHHHHHhHHHHhCCCCCC
Q 047831 4 RALFSCALLGIFLLFLQSHCHNLAINFHQDVYLKGSPQRNTIQQYPVTRKIVKAKLGLPPL 64 (152)
Q Consensus 4 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~~~~L 64 (152)
|++++. .++++.++++.|.+.. .-+..+.+.++.|..|+.+=.+.|+|-+
T Consensus 2 k~~~~~-~~~~~~~llsGC~sl~----------~ysISE~Ein~yL~k~~~~~k~~G~~gl 51 (186)
T PRK10598 2 KKFLFA-AALLVSGLLVGCNQLT----------QYTISEQEINQYLAKHNNFEKQIGLPGV 51 (186)
T ss_pred chHHHH-HHHHHHHHHhcccccC----------ceeecHHHHHHHHHHhccHHHhcCCCce
Confidence 666554 4444444455554311 1234466788999999999999986643
No 19
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=65.78 E-value=14 Score=26.67 Aligned_cols=57 Identities=19% Similarity=0.120 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccch-hh---------hhhccCCCChhHHhhHHHHHhHHHHhC
Q 047831 3 IRALFSCALLGIFLLFLQSHCHNLAINF-HQ---------DVYLKGSPQRNTIQQYPVTRKIVKAKL 59 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~il~~hN~~R~~~ 59 (152)
|++|+..+++-.++|++++|......-. .+ +.....+.-.+-++.||...|++-.+.
T Consensus 1 mkklikill~slflllsisc~hdkqelssksnlnnqkgyldneg~ns~yeskkqsil~elnqll~qt 67 (254)
T PF03207_consen 1 MKKLIKILLLSLFLLLSISCVHDKQELSSKSNLNNQKGYLDNEGANSNYESKKQSILSELNQLLKQT 67 (254)
T ss_pred ChhHHHHHHHHHHHHHhhhhccchhhhccccccccccccccccccccchHHHHHHHHHHHHHHHHHh
Confidence 4788888888888889989875321100 00 000001122356678898888876543
No 20
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=56.85 E-value=23 Score=26.36 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|.|.+.+..+++.++.+|+.+|+.
T Consensus 1 ~~~~~~~~~~l~~~As~LL~aC~~ 24 (206)
T COG3017 1 MPMMKRLLFLLLALASLLLTACTL 24 (206)
T ss_pred CchHHHHHHHHHHHHHHHHHhccC
Confidence 444555555566666666667744
No 21
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=55.73 E-value=36 Score=26.04 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=44.5
Q ss_pred HHhhHHHHHhHHHHhCCCCCCc-----------c-cHHHHHHHHHHHHHhccCCCccCCCC--------Ccc----ceee
Q 047831 44 TIQQYPVTRKIVKAKLGLPPLQ-----------W-RKKLANFASWWVNQQRRDCDLVHSNS--------NHG----ESLF 99 (152)
Q Consensus 44 ~~~~il~~hN~~R~~~~~~~L~-----------w-d~~La~~Aq~~A~~~a~~c~~~h~~~--------~~G----eNi~ 99 (152)
..-++|+.+|..|...|++.+. . ++++ .....|-+ -|...-.+. ... -+.+
T Consensus 34 ~~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~GTyA 108 (254)
T PF11054_consen 34 TSVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDGTYA 108 (254)
T ss_pred cchhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCCceE
Confidence 3678999999999999966432 1 2233 33445555 453321100 111 2233
Q ss_pred ecc--CCCCCHHHHHHHHHhccccCCC
Q 047831 100 WGS--GKNWKSADAVAAWAAEQGYYNH 124 (152)
Q Consensus 100 ~~~--~~~~~~~~~v~~W~~e~~~y~~ 124 (152)
+.+ +...++.++|+.|-...++|+-
T Consensus 109 f~~lt~~~~dCk~aVdYWKaafknF~g 135 (254)
T PF11054_consen 109 FKSLTDEKPDCKEAVDYWKAAFKNFTG 135 (254)
T ss_pred eeeccCCCCChHHHHHHHHHHHhhcCC
Confidence 322 2345899999999887777664
No 22
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=53.63 E-value=23 Score=24.81 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 047831 4 RALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 4 r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|+++..++.+++++ +++|..
T Consensus 2 r~~~s~~Lv~~~~~-Lvsc~~ 21 (142)
T TIGR03042 2 RSLASLLLVLLLTF-LVSCSG 21 (142)
T ss_pred hhHHHHHHHHHHHH-HHHcCC
Confidence 66665555544444 666654
No 23
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=49.66 E-value=47 Score=23.03 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCCChhHHhhHHHHHhHHHHhCCCCCCc
Q 047831 38 GSPQRNTIQQYPVTRKIVKAKLGLPPLQ 65 (152)
Q Consensus 38 ~~~~~~~~~~il~~hN~~R~~~~~~~L~ 65 (152)
.....+..++-+...+.+|....+|+=.
T Consensus 31 ~~Ltg~Y~~DT~~Vi~tlr~~i~lpkd~ 58 (135)
T TIGR03044 31 TRLTGDYVEDTLAVIQTLREAIDLPDDD 58 (135)
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCCCC
Confidence 4455678999999999999999987543
No 24
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=49.25 E-value=24 Score=22.46 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=8.3
Q ss_pred hHHhhHHHHHhHHHH
Q 047831 43 NTIQQYPVTRKIVKA 57 (152)
Q Consensus 43 ~~~~~il~~hN~~R~ 57 (152)
+..+++...+|..|.
T Consensus 38 ~kvdql~~dv~~a~a 52 (85)
T PRK09973 38 AKIARLEQDMKALRP 52 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455566666664
No 25
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=47.74 E-value=36 Score=19.20 Aligned_cols=20 Identities=10% Similarity=0.188 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH-HHhhh
Q 047831 3 IRALFSCALLGIFLL-FLQSH 22 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l-~~~~~ 22 (152)
|||.+..++++++++ .+++|
T Consensus 2 mKk~i~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTAC 22 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 677666544444444 35455
No 26
>PRK10540 lipoprotein; Provisional
Probab=46.84 E-value=29 Score=21.35 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHC 23 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~ 23 (152)
|.+||++...+.+..++.+..|.
T Consensus 3 ~~~kr~~~~~~~~~~a~~L~gC~ 25 (72)
T PRK10540 3 VTSKKMAAAVLAITLAMSLSACS 25 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHhccC
Confidence 44555555555555455555553
No 27
>PRK11372 lysozyme inhibitor; Provisional
Probab=44.80 E-value=23 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|.||+++..+ +.++++.|+.
T Consensus 1 ~~mk~ll~~~----~~~lL~gCs~ 20 (109)
T PRK11372 1 MSMKKLLIIC----LPVLLTGCSA 20 (109)
T ss_pred CchHHHHHHH----HHHHHHHhcC
Confidence 7889865333 2333456654
No 28
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=44.37 E-value=36 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=11.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|++++++.++ +++++++++|+.
T Consensus 1 m~~~~~~~~~--~~~~~~LsgCs~ 22 (113)
T PRK11548 1 MRCKTLTAAA--AVLLMLTAGCST 22 (113)
T ss_pred CcchHHHHHH--HHHHHHHcccCC
Confidence 7777655433 333445566654
No 29
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=39.55 E-value=21 Score=25.38 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.8
Q ss_pred hHHHHHhHHHHhCCCCCCc
Q 047831 47 QYPVTRKIVKAKLGLPPLQ 65 (152)
Q Consensus 47 ~il~~hN~~R~~~~~~~L~ 65 (152)
.--...|+.|.+.|++||.
T Consensus 104 ~~Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 104 PGALKINEIREKRGLPPLE 122 (158)
T ss_pred hhHHHHHHHHHHCCCCCeE
Confidence 3445799999999999986
No 30
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=39.32 E-value=54 Score=17.63 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCChhHHhhHHHHHhHHHHhCCCCCC
Q 047831 38 GSPQRNTIQQYPVTRKIVKAKLGLPPL 64 (152)
Q Consensus 38 ~~~~~~~~~~il~~hN~~R~~~~~~~L 64 (152)
..+...-+++||..|=+++...|-.|+
T Consensus 12 ~ePH~~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 12 DEPHASRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred CCccHHHHHHHHHhChHHHHHhCCCCC
Confidence 345567799999999999999997775
No 31
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=38.79 E-value=35 Score=24.50 Aligned_cols=24 Identities=8% Similarity=0.283 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|++++++..+++++.++.+++|.+
T Consensus 1 m~~~~~~~~~~~~~~~~~laaC~s 24 (173)
T PRK10802 1 MQLNKVLKGLMLALPVMAIAACSS 24 (173)
T ss_pred CcchHHHHHHHHHHHHHHHHHcCC
Confidence 666655444444444555666654
No 32
>KOG4527 consensus Cytochrome c oxidase, subunit VIIc/COX8 [Energy production and conversion]
Probab=37.38 E-value=34 Score=21.00 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhccCCCccCCCC---Cccceeeec
Q 047831 69 KLANFASWWVNQQRRDCDLVHSNS---NHGESLFWG 101 (152)
Q Consensus 69 ~La~~Aq~~A~~~a~~c~~~h~~~---~~GeNi~~~ 101 (152)
-|...|++-.+.|.+...++|++. .+|||+=..
T Consensus 6 ml~~~a~r~s~~mvR~~h~~~sp~~~~~~geNLPF~ 41 (76)
T KOG4527|consen 6 MLRTTAKRSSNIMVRPSHMKRSPHFKDGVGENLPFK 41 (76)
T ss_pred HHHHHHhhhhhhheecccccCCCCcccccCCCCCeE
Confidence 466778888888888777777763 789998443
No 33
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=35.37 E-value=1.7e+02 Score=22.83 Aligned_cols=19 Identities=11% Similarity=0.384 Sum_probs=16.0
Q ss_pred CCCCcccHHHHHHHHHHHHH
Q 047831 61 LPPLQWRKKLANFASWWVNQ 80 (152)
Q Consensus 61 ~~~L~wd~~La~~Aq~~A~~ 80 (152)
+|.+. +++++..|.+..+.
T Consensus 71 vpSt~-g~~IE~ya~rlfd~ 89 (271)
T COG1512 71 VPSTG-GETIEQYATRLFDK 89 (271)
T ss_pred ecCCC-CCCHHHHHHHHHHh
Confidence 66777 99999999999884
No 34
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=35.19 E-value=60 Score=25.47 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047831 3 IRALFSCALLGIFLLFL 19 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l~~ 19 (152)
||+++|.++.++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (343)
T PRK10936 1 MRKLLFLLLSLFLLSLT 17 (343)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 48888776655554443
No 35
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.51 E-value=1.1e+02 Score=22.85 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|-|++.++.+.+++.++++..+..
T Consensus 1 ~~m~k~l~~~~ll~~a~a~~~~~~ 24 (202)
T COG2854 1 MMMKKSLTILALLVIAFASSLAAA 24 (202)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666665555555544444433
No 36
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=34.19 E-value=42 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=18.5
Q ss_pred hHHhhHHHHHhHHHHhCCCCCCc
Q 047831 43 NTIQQYPVTRKIVKAKLGLPPLQ 65 (152)
Q Consensus 43 ~~~~~il~~hN~~R~~~~~~~L~ 65 (152)
.+...--..+|+.|.+.|++||.
T Consensus 97 ~ET~~~~~~iN~~R~~~gl~pl~ 119 (143)
T cd02164 97 PETYPGALKINRKREENGLSPLE 119 (143)
T ss_pred HHHhhhHHHHHHHHHHCCCCcee
Confidence 44455568899999999999985
No 37
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=33.54 E-value=9.3 Score=21.13 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 047831 4 RALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 4 r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|+.++++++++. +++++|-.
T Consensus 2 kKi~~~~i~~~~-~~L~aCQa 21 (46)
T PF02402_consen 2 KKIIFIGIFLLT-MLLAACQA 21 (46)
T ss_pred cEEEEeHHHHHH-HHHHHhhh
Confidence 455555554444 55556643
No 38
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.11 E-value=58 Score=15.72 Aligned_cols=7 Identities=0% Similarity=0.002 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 047831 4 RALFSCA 10 (152)
Q Consensus 4 r~~~~~~ 10 (152)
||.++.+
T Consensus 8 Kkil~~l 14 (25)
T PF08139_consen 8 KKILFPL 14 (25)
T ss_pred HHHHHHH
Confidence 5544433
No 39
>PLN02388 phosphopantetheine adenylyltransferase
Probab=32.89 E-value=31 Score=25.07 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=17.9
Q ss_pred hHHhhHHHHHhHHHHhCCCCCCc
Q 047831 43 NTIQQYPVTRKIVKAKLGLPPLQ 65 (152)
Q Consensus 43 ~~~~~il~~hN~~R~~~~~~~L~ 65 (152)
.+...--..+|++|...|++||.
T Consensus 117 ~ET~~g~~~IN~~R~e~Gl~pL~ 139 (177)
T PLN02388 117 KETLPGGLSVNKKRAERGLSQLK 139 (177)
T ss_pred HhHhhhHHHHHHHHHHCCCCCeE
Confidence 34444567899999999999875
No 40
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=32.78 E-value=46 Score=21.44 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=6.1
Q ss_pred ChHHHHHHHH
Q 047831 1 MEIRALFSCA 10 (152)
Q Consensus 1 m~~r~~~~~~ 10 (152)
|.||+.+..+
T Consensus 1 m~~~~~~~ll 10 (91)
T TIGR01165 1 MSMKKTIWLL 10 (91)
T ss_pred CCcchhHHHH
Confidence 7778755433
No 41
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=32.10 E-value=89 Score=17.36 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHh
Q 047831 8 SCALLGIFLLFLQ 20 (152)
Q Consensus 8 ~~~~~~~~~l~~~ 20 (152)
|+++++|++|.+.
T Consensus 35 fclilicllli~i 47 (52)
T PF04272_consen 35 FCLILICLLLICI 47 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777666543
No 42
>PHA02291 hypothetical protein
Probab=31.24 E-value=49 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|-.++.+|-+++++++++++++-.
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY~ 24 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSYY 24 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHh
Confidence 566778888888888888777654
No 43
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=29.47 E-value=68 Score=28.69 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=36.8
Q ss_pred CCCChhHHhhHHHHHhHHHHhC------------C----------CCCCcccHHHHHHHHHHHHHhcc
Q 047831 38 GSPQRNTIQQYPVTRKIVKAKL------------G----------LPPLQWRKKLANFASWWVNQQRR 83 (152)
Q Consensus 38 ~~~~~~~~~~il~~hN~~R~~~------------~----------~~~L~wd~~La~~Aq~~A~~~a~ 83 (152)
+.....+++.+++..|.-+... | |-.|.|++.|++.|+...-.|..
T Consensus 778 Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQ 845 (901)
T KOG4439|consen 778 GQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQ 845 (901)
T ss_pred CccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcc
Confidence 5556678999999999988632 1 55799999999999998876653
No 44
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=28.74 E-value=20 Score=24.38 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=0.0
Q ss_pred Ch-HHHHHHHHHHHHHHHHHhh
Q 047831 1 ME-IRALFSCALLGIFLLFLQS 21 (152)
Q Consensus 1 m~-~r~~~~~~~~~~~~l~~~~ 21 (152)
|+ +|+.++.+++++++++...
T Consensus 1 M~~~kk~l~~~l~~~~la~~~~ 22 (144)
T PF12869_consen 1 MKILKKILIIILILIVLAFIIA 22 (144)
T ss_dssp ----------------------
T ss_pred CchhhhHHHHHHHHHHHHHHHh
Confidence 66 5555555544444444433
No 45
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=28.32 E-value=42 Score=23.88 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=9.3
Q ss_pred ChHHHHHHHHHHH
Q 047831 1 MEIRALFSCALLG 13 (152)
Q Consensus 1 m~~r~~~~~~~~~ 13 (152)
|.|||.+..++++
T Consensus 1 m~~~~~~~~~~~~ 13 (176)
T PRK15205 1 MKNKRALLPLALL 13 (176)
T ss_pred CchHHHHHHHHHH
Confidence 8999977655544
No 46
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=28.27 E-value=68 Score=20.19 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q 047831 3 IRALFSCALLG 13 (152)
Q Consensus 3 ~r~~~~~~~~~ 13 (152)
||++++..+.+
T Consensus 1 MR~~~~aa~a~ 11 (82)
T PF12071_consen 1 MRRLLLAALAL 11 (82)
T ss_pred ChhHHHHHHHH
Confidence 47777665554
No 47
>PRK12450 foldase protein PrsA; Reviewed
Probab=27.50 E-value=73 Score=25.05 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
=.||++++.++++++++.++.|..
T Consensus 2 ~~~kk~i~~~~~~~~~~~l~gc~~ 25 (309)
T PRK12450 2 KQMNKLITGVVTLATVVTLSACQS 25 (309)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCC
Confidence 037887777777666666666643
No 48
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.27 E-value=73 Score=18.87 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 047831 7 FSCALLGIFLLFLQSH 22 (152)
Q Consensus 7 ~~~~~~~~~~l~~~~~ 22 (152)
++.+.++|++|+.+..
T Consensus 5 l~vialLC~aLva~vQ 20 (65)
T PF10731_consen 5 LIVIALLCVALVAIVQ 20 (65)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5556666666665444
No 49
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.89 E-value=1.1e+02 Score=24.32 Aligned_cols=14 Identities=7% Similarity=0.029 Sum_probs=12.1
Q ss_pred hHHHHHhHHHHhCC
Q 047831 47 QYPVTRKIVKAKLG 60 (152)
Q Consensus 47 ~il~~hN~~R~~~~ 60 (152)
++|...|+.+.+.+
T Consensus 29 ~~L~km~~A~~~ln 42 (320)
T COG3026 29 AWLQKMNEASQSLN 42 (320)
T ss_pred HHHHHHHHHHHhcC
Confidence 79999999998874
No 50
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=25.77 E-value=28 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHC 23 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~ 23 (152)
|.||+.++.+ +.+++++|+
T Consensus 3 ~~mk~~~~l~----~~l~LS~~s 21 (104)
T PRK14864 3 MVMRRFASLL----LTLLLSACS 21 (104)
T ss_pred hHHHHHHHHH----HHHHHhhhh
Confidence 5677644332 334444553
No 51
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=25.67 E-value=1.1e+02 Score=16.05 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 047831 3 IRALFSCALLGIFLLF 18 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l~ 18 (152)
+|...+|..+++++++
T Consensus 20 irnit~cfal~vv~lv 35 (40)
T PF13124_consen 20 IRNITFCFALLVVVLV 35 (40)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556555555544
No 52
>PRK01622 OxaA-like protein precursor; Validated
Probab=25.66 E-value=77 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|+.||.+...+++.++++++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~gc~~ 25 (256)
T PRK01622 2 LKSYRAVLVSLSLLLVLVLSGCSN 25 (256)
T ss_pred chHHHHHHHHHHHHHHHHHhccCC
Confidence 455666655555666666777755
No 53
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=25.49 E-value=71 Score=24.93 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
|.|++.++.+.+++++|+.++|++
T Consensus 1 ~~~~~~~~i~~lll~lllva~C~~ 24 (310)
T COG4594 1 MHMKKTAIILTLLLLLLLVAACSS 24 (310)
T ss_pred CCchhhHHHHHHHHHHHHHHHhcC
Confidence 666777777777777777776654
No 54
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=25.49 E-value=4.2e+02 Score=22.52 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHHhccCCCccCCCC--------------CccceeeeccC
Q 047831 54 IVKAKLGLPPLQWRKKLANFASWWVNQQRRDCDLVHSNS--------------NHGESLFWGSG 103 (152)
Q Consensus 54 ~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~c~~~h~~~--------------~~GeNi~~~~~ 103 (152)
..|...+-.|+.-|++|++.-......+++.-...+.+. ..|-+|+..+|
T Consensus 56 ~~~Qlr~~~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAFA~~Gg~v~vntG 119 (484)
T COG4783 56 ANAQLRGSVPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAFATPGGYVVVNTG 119 (484)
T ss_pred HHHHhccCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchhhcCCceEEEehH
Confidence 334455558999999999999999999886655555543 44777776654
No 55
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=24.49 E-value=40 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q 047831 3 IRALFSCALLGIFLLFLQSHCHNL 26 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l~~~~~~~~~ 26 (152)
||++.+ +++.++++..|++..
T Consensus 1 Mrk~~~---~~l~~~lLvGCsS~~ 21 (123)
T COG5633 1 MRKLCL---LSLALLLLVGCSSHQ 21 (123)
T ss_pred CceehH---HHHHHHHhhccCCCC
Confidence 366665 344455555666533
No 56
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=24.47 E-value=86 Score=18.01 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 047831 3 IRALFSCALLGIFL 16 (152)
Q Consensus 3 ~r~~~~~~~~~~~~ 16 (152)
||.|.+...+++++
T Consensus 1 MRTL~LLaAlLLlA 14 (52)
T PF00879_consen 1 MRTLALLAALLLLA 14 (52)
T ss_pred CcHHHHHHHHHHHH
Confidence 36655444333333
No 57
>PRK09738 small toxic polypeptide; Provisional
Probab=23.63 E-value=57 Score=18.73 Aligned_cols=21 Identities=19% Similarity=0.274 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 047831 3 IRALFSCALLGIFLLFLQSHC 23 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l~~~~~~ 23 (152)
-+.++.+++.+|+.++.....
T Consensus 5 ~~~~~~~livvCiTvL~f~~l 25 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTYL 25 (52)
T ss_pred cceehhhHHHHHHHHHHHHHH
Confidence 445677888888877766553
No 58
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.94 E-value=1e+02 Score=19.59 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=7.9
Q ss_pred ChHHHHHHHHHHHHHHH
Q 047831 1 MEIRALFSCALLGIFLL 17 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l 17 (152)
|..|.+++.++++.+.+
T Consensus 1 MaRRlwiLslLAVtLtV 17 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTV 17 (100)
T ss_pred CchhhHHHHHHHHHHHH
Confidence 54454555554444333
No 59
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=22.83 E-value=1.1e+02 Score=22.48 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 047831 3 IRALFSCALLGIFLLFLQSHCH 24 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l~~~~~~~ 24 (152)
||.++..++++++++++++|++
T Consensus 7 ~~~~~~~~~~~~~~~~l~ac~~ 28 (190)
T PRK10838 7 LRYILRGIPAIAVAVLLSACSA 28 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4555556666777777777764
No 60
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=22.07 E-value=1.9e+02 Score=22.34 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=49.6
Q ss_pred CCChhHHhhHHHHHhHHHHhC----CCCCCcccHHHHHHHHHHHHHhccC--CCccCCCCCccceeeeccCCCCCHHHHH
Q 047831 39 SPQRNTIQQYPVTRKIVKAKL----GLPPLQWRKKLANFASWWVNQQRRD--CDLVHSNSNHGESLFWGSGKNWKSADAV 112 (152)
Q Consensus 39 ~~~~~~~~~il~~hN~~R~~~----~~~~L~wd~~La~~Aq~~A~~~a~~--c~~~h~~~~~GeNi~~~~~~~~~~~~~v 112 (152)
.+..++...++..+...|+.. +-..+.=++.|++.-+.-...|... -.-.|-. +.|+.+-|..+..+++.+++
T Consensus 147 ~PsP~ET~~li~~~Y~~~rnLLIkF~~D~iDqt~~L~~~L~~r~~~~~~~~~L~G~HLT-Pl~q~~~~~~g~~ftP~da~ 225 (250)
T PF07082_consen 147 TPSPEETRRLIRESYQVRRNLLIKFNDDDIDQTDELEQILQQRFPDMVSIQTLPGNHLT-PLGQDLKWQVGSSFTPLDAV 225 (250)
T ss_pred cCCHHHHHHHHHHhcCCccceEEEecCCCccchHHHHHHHhhhccccceEEeCCCCCCC-cCcCCcCCccCCccCchHHH
Confidence 444566666776665555443 2345666667776666554444221 1222333 67888877777778999999
Q ss_pred HHHHhccc
Q 047831 113 AAWAAEQG 120 (152)
Q Consensus 113 ~~W~~e~~ 120 (152)
.+|..+..
T Consensus 226 ~q~~k~~~ 233 (250)
T PF07082_consen 226 GQWLKQEV 233 (250)
T ss_pred HHHHHHHH
Confidence 99987654
No 61
>PF03343 SART-1: SART-1 family; InterPro: IPR005011 This family of proteins appear to contain a leucine zipper [] and may therefore be a family of transcription factors.; PDB: 3PLV_C 3PLU_D.
Probab=22.07 E-value=57 Score=28.19 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=10.9
Q ss_pred HHHHhHHHHhCCCCCCcccH
Q 047831 49 PVTRKIVKAKLGLPPLQWRK 68 (152)
Q Consensus 49 l~~hN~~R~~~~~~~L~wd~ 68 (152)
+...|.+|..+||.||.-+.
T Consensus 5 IEETNklR~~LGLkPl~~~~ 24 (613)
T PF03343_consen 5 IEETNKLRASLGLKPLPVDD 24 (613)
T ss_dssp HHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 56789999999999998764
No 62
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=22.06 E-value=82 Score=17.52 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047831 3 IRALFSCALLGIFLLFL 19 (152)
Q Consensus 3 ~r~~~~~~~~~~~~l~~ 19 (152)
||+++.+.++..+++--
T Consensus 1 mkkll~~slltlam~~g 17 (48)
T PF05968_consen 1 MKKLLIGSLLTLAMAWG 17 (48)
T ss_pred CchHHHhHHHHHHHHhh
Confidence 47888877666665543
No 63
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=21.41 E-value=1.2e+02 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 047831 4 RALFSCALLGIFLL 17 (152)
Q Consensus 4 r~~~~~~~~~~~~l 17 (152)
|+++...+++..++
T Consensus 2 k~~~~s~~ala~l~ 15 (58)
T COG5567 2 KNVFKSLLALATLF 15 (58)
T ss_pred hhHHHHHHHHHHHH
Confidence 66665554444333
No 64
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=20.78 E-value=1.3e+02 Score=20.22 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=5.6
Q ss_pred ChHHHHHHHHHH
Q 047831 1 MEIRALFSCALL 12 (152)
Q Consensus 1 m~~r~~~~~~~~ 12 (152)
|.+|+.+...+.
T Consensus 2 l~I~~KL~~~f~ 13 (181)
T PF12729_consen 2 LSIRTKLILGFG 13 (181)
T ss_pred CcHHHHHHHHHH
Confidence 455554443333
No 65
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=20.55 E-value=2.3e+02 Score=17.74 Aligned_cols=14 Identities=0% Similarity=-0.228 Sum_probs=8.6
Q ss_pred hHHHHHhHHHHhCC
Q 047831 47 QYPVTRKIVKAKLG 60 (152)
Q Consensus 47 ~il~~hN~~R~~~~ 60 (152)
.|-...=+||++++
T Consensus 69 vIsAAI~~hR~~~~ 82 (82)
T PRK02919 69 VIAAAIHHHRRLNA 82 (82)
T ss_pred HHHHHHHHHHhcCC
Confidence 45555667787653
No 66
>PLN00064 photosystem II protein Psb27; Provisional
Probab=20.55 E-value=3.3e+02 Score=19.52 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=21.3
Q ss_pred ChhHHhhHHHHHhHHHHhCCCCCCc
Q 047831 41 QRNTIQQYPVTRKIVKAKLGLPPLQ 65 (152)
Q Consensus 41 ~~~~~~~il~~hN~~R~~~~~~~L~ 65 (152)
..+..++-+...+.+|..+.|+.=.
T Consensus 63 ~g~Y~~DT~aVi~~lr~tI~L~~dd 87 (166)
T PLN00064 63 DEEYVKETKDVIGKVRSTINMDKTD 87 (166)
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCC
Confidence 4568999999999999999998644
No 67
>PRK09759 small toxic polypeptide; Provisional
Probab=20.09 E-value=84 Score=17.88 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhc
Q 047831 1 MEIRALFSCALLGIFLLFLQSHC 23 (152)
Q Consensus 1 m~~r~~~~~~~~~~~~l~~~~~~ 23 (152)
|.-|.++.+++.+|+.++...-.
T Consensus 1 mp~k~~l~~liivCiTvL~f~~l 23 (50)
T PRK09759 1 MPQKYRLLSLIVICFTLLFFTWM 23 (50)
T ss_pred CCceeeHHHHHHHHHHHHHHHHH
Confidence 44455677777787777766553
No 68
>COG5455 Predicted integral membrane protein [Function unknown]
Probab=20.06 E-value=80 Score=21.68 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 047831 2 EIRALFSCALLGIFLLFLQSH 22 (152)
Q Consensus 2 ~~r~~~~~~~~~~~~l~~~~~ 22 (152)
+|++++++++++..++..++.
T Consensus 1 ~mkrlv~~lla~s~~a~p~a~ 21 (129)
T COG5455 1 NMKRLVSALLAVSSVAAPMAL 21 (129)
T ss_pred CchhHHHHHHHHHHhhcchhh
Confidence 368888888666665554444
No 69
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=20.04 E-value=1.8e+02 Score=16.17 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 047831 8 SCALLGIFLLFLQ 20 (152)
Q Consensus 8 ~~~~~~~~~l~~~ 20 (152)
|+++++|++|.+.
T Consensus 35 f~lilicllli~i 47 (52)
T TIGR01294 35 FCLILICLLLICI 47 (52)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666543
Done!