BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047833
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 218/479 (45%), Gaps = 53/479 (11%)
Query: 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFD 67
+ + P GH+IP + A L + T+TFV P + +L+
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA-------GEGPPSKAQRTVLDSLPS 61
Query: 68 SIDHNLPPCTENTD-SVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMF 126
SI P + TD S + S++ P +K+ + + + G P ++ D+F
Sbjct: 62 SISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV--EGGRLPTALVVDLF 119
Query: 127 FGWCKEIAQEYXXXXXXXXXXXXXXXXCYYSLWVNLPHRNMDSDECVLPDFPEASTIHA- 185
++A E+ S +++LP + ++ C + E +
Sbjct: 120 GTDAFDVAVEFHVPPYIFYPTTAN----VLSFFLHLPKLD-ETVSCEFRELTEPLMLPGC 174
Query: 186 --TQLADYLRVA-DGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKF--GR 240
D+L A D D L ++ A+GILVNT EL+ + +
Sbjct: 175 VPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKP 234
Query: 241 SVWPIGPVLLSTENRGGAGKEYGISTEL--CKKWLDTKPYTSVLYVSFGSQNTIATSQMM 298
V+P+GP++ GK+ TE C KWLD +P SVLYVSFGS T+ Q+
Sbjct: 235 PVYPVGPLV-------NIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLN 287
Query: 299 QLAMALEASGKNFIWVVRPPIG------FDINSEI------------KCSGQGLVVHKWA 340
+LA+ L S + F+WV+R P G FD +S+ + +G V+ WA
Sbjct: 288 ELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWA 347
Query: 341 PQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVA 400
PQ ++L+H S FL+HCGWNS LE++ G+P+I WPL AEQ N+ LL E+I +
Sbjct: 348 PQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPR 407
Query: 401 RGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMN 459
G V ++++A ++ +M E E+G +R E++E K++ G+S KA++
Sbjct: 408 AGDDGLVRREEVARVVKGLM-EGEEGKGVRNKMKELKEAACRVLKDD----GTSTKALS 461
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 124/487 (25%), Positives = 218/487 (44%), Gaps = 49/487 (10%)
Query: 1 MAQRKETIVLFPFMAQGHIIPFLALA--LHLEKTNKYTITFVNTPLNLRKLKSSVPQNSS 58
A RK +V+ P+ QGHI P LA LHL + ITFVNT N ++L S +
Sbjct: 4 FANRKPHVVMIPYPVQGHINPLFKLAKLLHLRG---FHITFVNTEYNHKRLLKSRGPKAF 60
Query: 59 INLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKP 118
+ F+SI L P E V + + +F + +L+ L N
Sbjct: 61 DGFTDFNFESIPDGLTP-MEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPV 119
Query: 119 LCIITDMFFGWCKEIAQEYXX--XXXXXXXXXXXXXXCYYSLWVN---LPHRNMDSDECV 173
C+++D + + A+E+ ++ +V +P + DE
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFK----DESY 175
Query: 174 LPD---------FPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVE 224
L + P + D++R + +D +V + IL+NT
Sbjct: 176 LTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFN 235
Query: 225 ELDKIGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTEL------CKKWLDTKPY 278
EL+ + S++PIGP+ + + + + L C WL++K
Sbjct: 236 ELESDVINALSSTIP-SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEP 294
Query: 279 TSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPP--IGFDI--NSEI--KCSGQ 332
SV+YV+FGS + Q+++ A L K+F+W++RP IG + +SE + + +
Sbjct: 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADR 354
Query: 333 GLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE 392
GL+ W PQ ++L+H S+ FL+HCGWNS E++ GVP++ WP A+Q + + + E
Sbjct: 355 GLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNE 413
Query: 393 IGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQG 452
+ +E+ + V ++++A I V+ +KG ++++ A E+++ K EEN +
Sbjct: 414 WEIGMEI----DTNVKREELAKLINEVI-AGDKGKKMKQKAMELKK------KAEENTRP 462
Query: 453 SSVKAMN 459
MN
Sbjct: 463 GGCSYMN 469
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 180/367 (49%), Gaps = 43/367 (11%)
Query: 97 SFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYXXXXXXXXXXXXXXXXCYY 156
+ + +FK ++++ + E G C++TD FF + ++A+E +
Sbjct: 98 AMQENFKHVIDEAVAE-TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTH- 155
Query: 157 SLWVNLPHRNMDSDEC-------VLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVL 209
++ +L S E VLP FPE + A+ L + + + D F+ +L K+
Sbjct: 156 -VYTDLIREKTGSKEVHDVKSIDVLPGFPE---LKASDLPEGV-IKDIDVPFATMLHKMG 210
Query: 210 PQWMNADGILVNTVEELDKIGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELC 269
+ A+ + +N+ + + KF + + +GP L+T R E+G C
Sbjct: 211 LELPRANAVAINSFATIHPLIENELNSKF-KLLLNVGPFNLTTPQRK-VSDEHG-----C 263
Query: 270 KKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRP------PIGFDI 323
+WLD +SV+Y+SFGS T ++ LA +LE G FIW R P GF
Sbjct: 264 LEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLE 323
Query: 324 NSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQF 383
++ K G +V WAPQVEIL H SV VFL+H GWNSVLE + GVP+I P +Q
Sbjct: 324 RTKTK----GKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQG 378
Query: 384 YNSKLLEE--EIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIK 441
N+ L E EIGV V+ + + K+ I +EL M+ +EKG +R+ +++E
Sbjct: 379 LNTILTESVLEIGVGVD-----NGVLTKESIKKALELTMS-SEKGGIMRQKIVKLKE--- 429
Query: 442 NAFKNEE 448
+AFK E
Sbjct: 430 SAFKAVE 436
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/485 (25%), Positives = 229/485 (47%), Gaps = 58/485 (11%)
Query: 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNK------YTITFVNTPLNLRKLKSSVPQNS 57
+ ++ P GH+ L A L +K + I F P +KS +
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 58 SINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYK 117
I L+++P PP E S +++++ L S PH K + ++ K
Sbjct: 68 QIQLIDLP-----EVEPPPQELLKSPEFYILTFL----ESLIPHVKATIKTILSN----K 114
Query: 118 PLCIITDMFFGWCKEIAQEYXXXXXXXXXXXXXXXXCYYSLWVNLPHRNM-----DSD-E 171
+ ++ D F ++ E+ + SL ++L +R + DSD +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVG----FLSLMLSLKNRQIEEVFDDSDRD 170
Query: 172 CVLPDFPEAST-IHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDK-- 228
L + P S + + L D DG K+ ++ + GI+VNT +L++
Sbjct: 171 HQLLNIPGISNQVPSNVLPDACFNKDGG---YIAYYKLAERFRDTKGIIVNTFSDLEQSS 227
Query: 229 IGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGIST-ELCKKWLDTKPYTSVLYVSFG 287
I +Y + ++ +GP+L + +G + + +L KWLD +P SV+++ FG
Sbjct: 228 IDALYDHDEKIPPIYAVGPLL---DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 288 SQN-TIATSQMMQLAMALEASGKNFIWVVRP-----PIGFDINSEIKCSGQGLVVHKWAP 341
S + SQ+ ++A+ L+ SG F+W P GF ++ G+G++ WAP
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGF--LEWMELEGKGMIC-GWAP 341
Query: 342 QVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE--IGVCVEV 399
QVE+L+H+++ F+SHCGWNS+LE++ GVPI+ WP+ AEQ N+ L +E +G+ + V
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 400 ARGKSSEVLKKDIAAKIELVMNE-TEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAM 458
K S+V+ A +IE + + +K + K E++E+ +NA + GSS+ ++
Sbjct: 402 DYRKGSDVVA---AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD----GGSSLISV 454
Query: 459 NQFLN 463
+ ++
Sbjct: 455 GKLID 459
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/485 (25%), Positives = 229/485 (47%), Gaps = 58/485 (11%)
Query: 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNK------YTITFVNTPLNLRKLKSSVPQNS 57
+ ++ P GH+ L A L +K + I F P +KS +
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 58 SINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYK 117
I L+++P PP E S +++++ L S PH K + ++ K
Sbjct: 68 QIQLIDLP-----EVEPPPQELLKSPEFYILTFL----ESLIPHVKATIKTILSN----K 114
Query: 118 PLCIITDMFFGWCKEIAQEYXXXXXXXXXXXXXXXXCYYSLWVNLPHRNM-----DSD-E 171
+ ++ D F ++ E+ + SL ++L +R + DSD +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVG----FLSLMLSLKNRQIEEVFDDSDRD 170
Query: 172 CVLPDFPEAST-IHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDK-- 228
L + P S + + L D DG K+ ++ + GI+VNT +L++
Sbjct: 171 HQLLNIPGISNQVPSNVLPDACFNKDGG---YIAYYKLAERFRDTKGIIVNTFSDLEQSS 227
Query: 229 IGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGIST-ELCKKWLDTKPYTSVLYVSFG 287
I +Y + ++ +GP+L + +G + + +L KWLD +P SV+++ FG
Sbjct: 228 IDALYDHDEKIPPIYAVGPLL---DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 288 SQN-TIATSQMMQLAMALEASGKNFIWVVRP-----PIGFDINSEIKCSGQGLVVHKWAP 341
S + SQ+ ++A+ L+ SG F+W P GF ++ G+G++ WAP
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGF--LEWMELEGKGMIC-GWAP 341
Query: 342 QVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE--IGVCVEV 399
QVE+L+H+++ F+SHCGWNS+LE++ GVPI+ WP+ AEQ N+ L +E +G+ + V
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 400 ARGKSSEVLKKDIAAKIELVMNE-TEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAM 458
K S+V+ A +IE + + +K + K E++E+ +NA + GSS+ ++
Sbjct: 402 DYRKGSDVVA---AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD----GGSSLISV 454
Query: 459 NQFLN 463
+ ++
Sbjct: 455 GKLID 459
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 36/288 (12%)
Query: 178 PEASTIHATQLADYLRVADGSDSFSAILQK---VLPQWMNADGILVNTVEELDKIGLMYF 234
P S + L + + + + FS +L + VLP+ A + +N+ EELD
Sbjct: 177 PGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPK---ATAVFINSFEELDDSLTNDL 233
Query: 235 KRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAT 294
K K ++ IGP L T +T C +WL + TSV+Y+SFG+ T
Sbjct: 234 KSKL-KTYLNIGPFNLITP------PPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPP 286
Query: 295 SQMMQLAMALEASGKNFIWVVRP------PIGFDINSEIKCSGQGLVVHKWAPQVEILSH 348
++++ L+ ALEAS FIW +R P GF K G G+VV WAPQ E+L+H
Sbjct: 287 AEVVALSEALEASRVPFIWSLRDKARVHLPEGF----LEKTRGYGMVV-PWAPQAEVLAH 341
Query: 349 RSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE--EIGVCVEVARGKSSE 406
+V F++HCGWNS+ E+++ GVP+I P +Q N +++E+ EIGV +E
Sbjct: 342 EAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE-----GGV 396
Query: 407 VLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAF----KNEENF 450
K + + + ++++ EKG +LR+N +RE A + ENF
Sbjct: 397 FTKSGLMSCFDQILSQ-EKGKKLRENLRALRETADRAVGPKGSSTENF 443
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 279 TSVLYVSFGSQNTIATSQMMQ-LAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVH 337
V+ S GS + T + +A AL + +W FD N G ++
Sbjct: 21 NGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWR------FDGNKP-DTLGLNTRLY 73
Query: 338 KWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQ 382
KW PQ ++L H F++H G N + EA+ HG+P +G PL A+Q
Sbjct: 74 KWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 336 VHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGV 395
VH+W PQ++IL+ S F++H G S +EALS+ VP++ P AEQ N++ + E+G+
Sbjct: 309 VHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI-VELGL 365
Query: 396 CVEVARGK-SSEVLKKDIAA 414
+ R + ++E L++ + A
Sbjct: 366 GRHIPRDQVTAEKLREAVLA 385
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 336 VHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGV 395
VH W PQ+ IL R +F++H G E L+ P+I P A +QF N+ +L + +GV
Sbjct: 287 VHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGV 343
Query: 396 CVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRK 431
++A +++ L ++ A + +++ E LR+
Sbjct: 344 ARKLATEEATADLLRETALAL---VDDPEVARRLRR 376
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 272 WLDTKPYTSVL-YVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCS 330
WL ++ L Y++ G+ + T ++++ A+ A + V P + S
Sbjct: 234 WLSSRDTARPLVYLTLGTSSG-GTVEVLRAAIDGLAGLDADVLVASGP-------SLDVS 285
Query: 331 GQGLV-----VHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQF 383
G G V + W PQ +L H V + + H G + L AL GVP + +P A + F
Sbjct: 286 GLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 234 FKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIA 293
F F +GP L + + G W +P VL VS G+Q
Sbjct: 200 FAETFDERFAFVGPTLTGRDGQPG--------------WQPPRPDAPVLLVSLGNQ---- 241
Query: 294 TSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCS-GQGLVVHKWAPQVEILSHRSVS 352
++ + A + + W V IG ++ + + H+W P +L+H
Sbjct: 242 FNEHPEFFRACAQAFADTPWHVVXAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAHARAC 301
Query: 353 VFLSHCGWNSVLEALSHGVPII 374
L+H +VLEA + GVP++
Sbjct: 302 --LTHGTTGAVLEAFAAGVPLV 321
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 337 HKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWP 377
H+W P V++L +V V +H G ++ EAL G P++ P
Sbjct: 302 HRWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVP 340
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 337 HKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWP 377
H+W P V++L +V V +H G ++ EAL G P++ P
Sbjct: 302 HRWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVP 340
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 223 VEELDKIGLMYFKRKFGRSVWPIGP 247
+ ++DK GL YF R +G S+ IGP
Sbjct: 97 IADVDKGGLWYFPRGWGHSIEGIGP 121
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 350 SVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEV 399
+ V + H G + L LS GVP + P+ AE + +++LL G VEV
Sbjct: 299 ACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEV 347
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 350 SVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEV 399
+ V + H G + L LS GVP + P+ AE + +++LL G VEV
Sbjct: 300 ACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEV 348
>pdb|3MVG|A Chain A, Native Structure Of Irip, A Type I Ribosome Inactivating
Protein From Iris Hollandica Var. At 1.25 A
pdb|3MVG|B Chain B, Native Structure Of Irip, A Type I Ribosome Inactivating
Protein From Iris Hollandica Var. At 1.25 A
Length = 275
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 33 NKYTITFVNTPLNLRKLKSSVPQNSS--INLLEIPFDSIDHNLPPCTENTDSVPYHLVSK 90
N + +TF + L+ + S +N IN L ++ + PP E + + ++ +
Sbjct: 98 NPHRLTFTGSYGALQNVAKSNRENIDLGINPLATAITTLHNWSPPTVETSVARSLIVLIQ 157
Query: 91 LIEATLSFKPHFKKLVNDLIDE-----QNGYKPLCIITDMFFGW 129
L+ T F+ +++ N++ID+ + ++P I D+ W
Sbjct: 158 LVSETARFRAIEQRVTNNIIDQVTPIRYDNFRPRVGIIDLQTNW 201
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 378 LAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAA-KIELVMNETEKGIELR 430
LA FYNSK +E+ + ++ AR ++ ++ +A K E+V++ T G LR
Sbjct: 649 LAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLR 702
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 378 LAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAA-KIELVMNETEKGIELR 430
LA FYNSK +E+ + ++ AR ++ ++ +A K E+V++ T G LR
Sbjct: 533 LAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLR 586
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,308,485
Number of Sequences: 62578
Number of extensions: 525533
Number of successful extensions: 1446
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 22
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)