Query 047833
Match_columns 473
No_of_seqs 130 out of 1478
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 2E-64 4.4E-69 499.2 47.3 449 3-468 7-472 (477)
2 PLN03007 UDP-glucosyltransfera 100.0 9.2E-64 2E-68 499.1 46.0 451 1-468 1-481 (482)
3 PLN02173 UDP-glucosyl transfer 100.0 3.7E-63 8.1E-68 484.4 45.2 433 1-466 1-447 (449)
4 PLN02534 UDP-glycosyltransfera 100.0 6.2E-63 1.3E-67 487.4 46.4 450 4-467 7-486 (491)
5 PLN02670 transferase, transfer 100.0 1.1E-62 2.3E-67 483.4 46.7 450 1-469 1-467 (472)
6 PLN02208 glycosyltransferase f 100.0 5.3E-63 1.1E-67 484.6 43.9 427 4-467 3-439 (442)
7 PLN02992 coniferyl-alcohol glu 100.0 1.2E-62 2.5E-67 483.5 46.1 437 1-470 1-472 (481)
8 PLN02210 UDP-glucosyl transfer 100.0 1.7E-62 3.7E-67 484.2 46.0 433 3-466 6-454 (456)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 2E-62 4.4E-67 481.6 46.0 428 4-467 6-450 (451)
10 PLN02764 glycosyltransferase f 100.0 2.1E-62 4.6E-67 477.4 45.6 435 1-470 1-448 (453)
11 PLN02555 limonoid glucosyltran 100.0 1.9E-62 4E-67 483.4 45.0 445 4-472 6-474 (480)
12 PLN02562 UDP-glycosyltransfera 100.0 3.5E-61 7.6E-66 474.4 45.5 429 4-466 5-448 (448)
13 PLN00414 glycosyltransferase f 100.0 3.4E-61 7.5E-66 472.3 45.0 432 3-471 2-444 (446)
14 PLN02448 UDP-glycosyltransfera 100.0 7.5E-61 1.6E-65 475.9 45.0 436 3-468 8-458 (459)
15 PLN03015 UDP-glucosyl transfer 100.0 1.5E-60 3.3E-65 465.7 44.2 431 5-466 3-467 (470)
16 PLN00164 glucosyltransferase; 100.0 3E-60 6.4E-65 471.2 44.4 434 5-469 3-475 (480)
17 PLN02207 UDP-glycosyltransfera 100.0 9.6E-60 2.1E-64 462.1 44.2 437 5-469 3-467 (468)
18 PLN02152 indole-3-acetate beta 100.0 9.5E-60 2.1E-64 461.2 44.0 432 6-465 4-454 (455)
19 PLN03004 UDP-glycosyltransfera 100.0 7.7E-60 1.7E-64 461.4 41.4 423 6-456 4-450 (451)
20 PLN02554 UDP-glycosyltransfera 100.0 1E-58 2.3E-63 462.1 42.9 429 5-468 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.6E-57 3.5E-62 452.8 44.0 439 4-467 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.1E-50 2.3E-55 405.6 28.8 416 5-465 20-465 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 7E-51 1.5E-55 414.4 1.3 392 7-442 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.7E-44 3.6E-49 356.3 31.6 391 11-466 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.8E-44 6.1E-49 356.3 26.6 370 6-441 1-386 (401)
26 COG1819 Glycosyl transferases, 100.0 2.2E-43 4.7E-48 343.8 23.9 395 5-467 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3E-40 6.4E-45 336.5 23.0 406 5-441 5-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 1.5E-27 3.3E-32 229.8 26.9 324 5-435 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.5E-24 3.2E-29 208.3 25.4 306 6-419 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 5E-24 1.1E-28 202.6 27.3 326 7-436 2-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.5E-22 7.5E-27 191.4 22.6 303 7-423 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 2.1E-19 4.5E-24 175.5 29.5 345 5-466 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 9.7E-18 2.1E-22 163.3 27.0 326 7-433 1-335 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.8 2.7E-17 5.8E-22 161.0 22.3 352 5-463 5-384 (385)
35 TIGR01133 murG undecaprenyldip 99.8 5.1E-16 1.1E-20 151.1 25.8 309 7-423 2-322 (348)
36 COG4671 Predicted glycosyl tra 99.7 1.4E-15 3.1E-20 137.9 26.1 332 5-423 9-366 (400)
37 TIGR03590 PseG pseudaminic aci 99.7 3.5E-15 7.6E-20 139.3 21.7 104 279-388 170-278 (279)
38 PRK00025 lpxB lipid-A-disaccha 99.7 6E-15 1.3E-19 145.3 23.0 354 5-467 1-377 (380)
39 PRK13609 diacylglycerol glucos 99.6 7.7E-14 1.7E-18 137.4 26.3 165 277-466 200-370 (380)
40 PRK13608 diacylglycerol glucos 99.6 1.1E-13 2.3E-18 136.4 20.5 166 277-467 200-371 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 2.7E-16 5.9E-21 135.8 -1.4 136 281-423 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.5 2.5E-11 5.4E-16 119.4 25.4 145 268-423 195-349 (382)
43 PF03033 Glyco_transf_28: Glyc 99.4 2.1E-13 4.7E-18 113.9 7.5 124 8-150 1-133 (139)
44 TIGR03492 conserved hypothetic 99.4 2.3E-10 5E-15 112.3 26.6 359 14-463 5-394 (396)
45 cd03814 GT1_like_2 This family 99.4 1.9E-09 4.1E-14 105.0 31.1 143 279-437 196-347 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 1.7E-08 3.8E-13 102.0 31.4 142 281-439 264-417 (465)
47 cd03823 GT1_ExpE7_like This fa 99.2 2.4E-08 5.1E-13 97.0 31.1 142 279-433 190-340 (359)
48 COG3980 spsG Spore coat polysa 99.2 2.5E-09 5.4E-14 94.8 18.9 146 279-439 158-306 (318)
49 cd03817 GT1_UGDG_like This fam 99.2 6.6E-08 1.4E-12 94.3 29.8 149 279-440 201-361 (374)
50 cd03816 GT1_ALG1_like This fam 99.2 9.7E-08 2.1E-12 95.0 30.3 92 332-437 294-399 (415)
51 cd03808 GT1_cap1E_like This fa 99.1 9.3E-08 2E-12 92.5 29.3 325 7-436 1-343 (359)
52 cd03794 GT1_wbuB_like This fam 99.1 5.2E-08 1.1E-12 95.5 27.6 145 279-438 219-381 (394)
53 cd03801 GT1_YqgM_like This fam 99.1 7.4E-08 1.6E-12 93.4 27.6 320 16-434 14-353 (374)
54 cd03800 GT1_Sucrose_synthase T 99.1 1.1E-07 2.3E-12 94.3 28.8 146 280-437 220-383 (398)
55 cd04962 GT1_like_5 This family 99.1 3.3E-07 7.1E-12 89.9 29.7 142 280-436 197-350 (371)
56 PRK10307 putative glycosyl tra 99.0 1.2E-06 2.6E-11 87.4 31.9 97 332-438 284-389 (412)
57 TIGR00236 wecB UDP-N-acetylglu 99.0 1.5E-07 3.3E-12 92.1 24.4 157 279-463 197-363 (365)
58 PRK05749 3-deoxy-D-manno-octul 99.0 4E-07 8.6E-12 91.1 26.7 115 333-466 303-422 (425)
59 cd03818 GT1_ExpC_like This fam 99.0 1.1E-06 2.4E-11 87.1 29.4 97 331-439 280-383 (396)
60 cd03820 GT1_amsD_like This fam 99.0 6E-07 1.3E-11 86.4 26.3 148 280-440 178-337 (348)
61 cd03795 GT1_like_4 This family 98.9 5.8E-07 1.3E-11 87.4 26.0 149 280-439 191-349 (357)
62 cd03798 GT1_wlbH_like This fam 98.9 5.5E-06 1.2E-10 80.5 31.4 132 279-423 201-345 (377)
63 cd03805 GT1_ALG2_like This fam 98.9 2.2E-06 4.8E-11 84.8 28.3 146 279-437 210-379 (392)
64 cd03825 GT1_wcfI_like This fam 98.9 2E-06 4.3E-11 84.0 27.3 114 330-466 242-363 (365)
65 cd03822 GT1_ecORF704_like This 98.9 7.3E-06 1.6E-10 79.8 31.0 146 280-439 185-351 (366)
66 PF04007 DUF354: Protein of un 98.9 5.3E-06 1.1E-10 78.7 28.0 300 7-420 2-308 (335)
67 cd03821 GT1_Bme6_like This fam 98.9 5.8E-06 1.3E-10 80.5 29.4 143 279-436 202-359 (375)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 9.9E-08 2.1E-12 93.4 16.5 132 278-423 197-338 (363)
69 TIGR03449 mycothiol_MshA UDP-N 98.8 3E-06 6.4E-11 84.3 27.2 147 280-438 219-384 (405)
70 cd03819 GT1_WavL_like This fam 98.8 1E-05 2.2E-10 78.8 30.0 149 279-439 184-348 (355)
71 cd03811 GT1_WabH_like This fam 98.8 1.8E-06 3.9E-11 83.2 24.3 133 279-423 188-333 (353)
72 cd03796 GT1_PIG-A_like This fa 98.8 3E-06 6.5E-11 84.0 26.3 131 279-423 192-334 (398)
73 cd03799 GT1_amsK_like This is 98.8 3E-06 6.4E-11 82.4 25.8 146 279-436 178-341 (355)
74 COG1519 KdtA 3-deoxy-D-manno-o 98.8 4.9E-06 1.1E-10 79.1 25.8 324 8-443 51-407 (419)
75 cd05844 GT1_like_7 Glycosyltra 98.7 3.8E-06 8.2E-11 82.2 22.7 96 330-437 243-351 (367)
76 cd03807 GT1_WbnK_like This fam 98.7 5.9E-05 1.3E-09 73.0 29.2 141 279-434 192-344 (365)
77 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 1.8E-05 4E-10 77.0 24.3 312 7-421 2-338 (365)
78 PRK09922 UDP-D-galactose:(gluc 98.6 1.2E-05 2.6E-10 78.6 23.0 148 281-440 181-344 (359)
79 PRK14089 ipid-A-disaccharide s 98.6 5.4E-06 1.2E-10 79.3 19.3 157 279-463 167-346 (347)
80 cd04951 GT1_WbdM_like This fam 98.6 5E-05 1.1E-09 73.9 26.7 131 279-423 187-327 (360)
81 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00015 3.2E-09 77.9 30.5 99 331-439 547-654 (1050)
82 PRK01021 lpxB lipid-A-disaccha 98.6 5.6E-05 1.2E-09 76.1 25.9 196 226-440 371-589 (608)
83 KOG3349 Predicted glycosyltran 98.6 4.3E-07 9.3E-12 72.7 8.6 116 280-398 4-131 (170)
84 TIGR03088 stp2 sugar transfera 98.5 0.0002 4.2E-09 70.4 29.5 146 279-436 193-352 (374)
85 cd03802 GT1_AviGT4_like This f 98.5 6.4E-05 1.4E-09 72.4 24.8 126 282-423 173-309 (335)
86 cd04955 GT1_like_6 This family 98.5 0.00016 3.5E-09 70.5 27.7 135 283-435 196-343 (363)
87 TIGR02472 sucr_P_syn_N sucrose 98.5 0.00038 8.3E-09 69.9 30.3 96 330-435 315-419 (439)
88 cd03809 GT1_mtfB_like This fam 98.5 3.6E-05 7.9E-10 74.8 21.7 143 281-438 196-352 (365)
89 cd03812 GT1_CapH_like This fam 98.4 0.00024 5.1E-09 69.1 26.1 132 279-423 191-332 (358)
90 PRK15179 Vi polysaccharide bio 98.3 0.0014 3E-08 68.8 30.2 148 280-437 517-674 (694)
91 PLN02275 transferase, transfer 98.3 0.0019 4.1E-08 63.4 29.8 75 332-420 286-371 (371)
92 TIGR02149 glgA_Coryne glycogen 98.3 0.0026 5.7E-08 62.7 31.2 144 281-436 202-366 (388)
93 cd03804 GT1_wbaZ_like This fam 98.2 0.00014 3E-09 70.8 19.7 136 282-434 197-339 (351)
94 PF02684 LpxB: Lipid-A-disacch 98.2 0.00036 7.9E-09 67.3 21.7 194 226-443 143-357 (373)
95 TIGR02470 sucr_synth sucrose s 98.2 0.013 2.7E-07 62.0 35.1 95 331-435 618-726 (784)
96 COG0381 WecB UDP-N-acetylgluco 98.2 0.00088 1.9E-08 63.5 23.2 354 5-466 3-373 (383)
97 PF02350 Epimerase_2: UDP-N-ac 98.2 3.1E-05 6.7E-10 74.7 13.3 127 277-423 178-319 (346)
98 cd03792 GT1_Trehalose_phosphor 98.2 0.0027 5.9E-08 62.3 27.4 160 280-466 190-370 (372)
99 TIGR03087 stp1 sugar transfera 98.2 0.00028 6.1E-09 70.0 20.3 140 281-437 225-377 (397)
100 COG0763 LpxB Lipid A disacchar 98.1 0.00053 1.1E-08 64.9 20.3 214 226-466 146-380 (381)
101 PLN02846 digalactosyldiacylgly 98.1 0.0027 5.9E-08 63.2 25.3 73 336-423 288-364 (462)
102 cd03791 GT1_Glycogen_synthase_ 98.0 0.0012 2.6E-08 67.1 22.5 135 279-422 295-442 (476)
103 cd03806 GT1_ALG11_like This fa 98.0 0.008 1.7E-07 60.0 27.6 81 330-423 303-393 (419)
104 PLN02949 transferase, transfer 98.0 0.023 4.9E-07 57.2 31.9 101 330-440 333-441 (463)
105 PRK00654 glgA glycogen synthas 98.0 0.01 2.3E-07 60.1 28.3 134 279-421 281-427 (466)
106 COG5017 Uncharacterized conser 97.9 0.00026 5.6E-09 56.0 11.4 126 282-421 2-141 (161)
107 cd04950 GT1_like_1 Glycosyltra 97.9 0.028 6E-07 55.2 28.9 124 281-423 206-341 (373)
108 TIGR02095 glgA glycogen/starch 97.9 0.018 3.9E-07 58.5 27.3 133 280-421 291-436 (473)
109 PLN02316 synthase/transferase 97.8 0.016 3.4E-07 63.0 26.8 168 281-468 841-1034(1036)
110 PLN00142 sucrose synthase 97.8 0.028 6.1E-07 59.5 28.0 73 353-435 669-749 (815)
111 PF00534 Glycos_transf_1: Glyc 97.8 0.00022 4.8E-09 61.5 10.2 146 278-435 13-171 (172)
112 cd04949 GT1_gtfA_like This fam 97.7 0.0017 3.7E-08 63.7 17.3 152 281-441 205-364 (372)
113 TIGR02918 accessory Sec system 97.7 0.0083 1.8E-07 61.0 21.4 103 331-441 375-485 (500)
114 cd04946 GT1_AmsK_like This fam 97.7 0.0014 3E-08 65.2 15.4 148 279-437 229-392 (407)
115 PRK15427 colanic acid biosynth 97.7 0.00099 2.1E-08 66.1 14.3 165 279-466 221-404 (406)
116 PLN02501 digalactosyldiacylgly 97.6 0.031 6.7E-07 57.7 23.7 76 333-423 602-682 (794)
117 cd03813 GT1_like_3 This family 97.6 0.022 4.7E-07 57.9 23.1 146 279-437 292-457 (475)
118 PRK15484 lipopolysaccharide 1, 97.5 0.0061 1.3E-07 60.0 17.6 115 331-468 256-378 (380)
119 PF13844 Glyco_transf_41: Glyc 97.4 0.002 4.4E-08 63.6 12.7 145 278-432 283-440 (468)
120 PRK10422 lipopolysaccharide co 97.2 0.053 1.2E-06 52.7 19.6 51 1-51 1-52 (352)
121 cd01635 Glycosyltransferase_GT 97.2 0.025 5.5E-07 50.5 16.4 49 331-381 160-216 (229)
122 TIGR02193 heptsyl_trn_I lipopo 97.0 0.036 7.9E-07 53.1 16.6 134 278-420 178-319 (319)
123 PF13692 Glyco_trans_1_4: Glyc 96.9 0.005 1.1E-07 50.5 8.1 124 281-422 3-135 (135)
124 PRK09814 beta-1,6-galactofuran 96.9 0.011 2.3E-07 57.1 11.4 111 330-463 205-331 (333)
125 PRK10125 putative glycosyl tra 96.8 0.61 1.3E-05 46.3 24.2 99 297-416 258-365 (405)
126 PF06722 DUF1205: Protein of u 96.6 0.0035 7.5E-08 47.9 4.7 66 266-335 27-97 (97)
127 PF13477 Glyco_trans_4_2: Glyc 96.6 0.022 4.7E-07 47.0 9.6 101 7-145 1-106 (139)
128 KOG4626 O-linked N-acetylgluco 96.5 0.018 3.9E-07 57.5 9.7 140 277-423 756-905 (966)
129 COG1817 Uncharacterized protei 96.5 0.73 1.6E-05 42.6 22.6 104 14-147 8-113 (346)
130 PRK15490 Vi polysaccharide bio 96.4 1.4 3.1E-05 44.9 27.6 114 281-401 399-522 (578)
131 TIGR02195 heptsyl_trn_II lipop 96.2 0.64 1.4E-05 44.8 18.9 103 7-143 1-105 (334)
132 TIGR02201 heptsyl_trn_III lipo 96.2 0.67 1.5E-05 44.8 19.1 106 7-143 1-108 (344)
133 PHA01633 putative glycosyl tra 96.1 0.27 5.9E-06 47.0 15.4 103 329-440 198-324 (335)
134 PF06258 Mito_fiss_Elm1: Mitoc 95.8 0.74 1.6E-05 43.7 16.5 39 341-380 221-259 (311)
135 PF13579 Glyco_trans_4_4: Glyc 95.6 0.014 3.1E-07 49.0 4.2 94 21-145 6-103 (160)
136 PRK10916 ADP-heptose:LPS hepto 95.6 1.3 2.9E-05 42.8 18.4 104 7-143 2-106 (348)
137 cd03789 GT1_LPS_heptosyltransf 95.4 2.3 4.9E-05 39.8 18.5 45 7-51 1-46 (279)
138 PRK14098 glycogen synthase; Pr 95.2 0.36 7.8E-06 49.2 13.4 165 281-467 308-485 (489)
139 COG0859 RfaF ADP-heptose:LPS h 95.0 2.1 4.6E-05 41.2 17.4 106 5-143 1-107 (334)
140 PRK10017 colanic acid biosynth 94.7 1.9 4.1E-05 42.9 16.4 159 270-441 225-408 (426)
141 PF08660 Alg14: Oligosaccharid 94.2 0.54 1.2E-05 40.2 10.0 112 12-146 4-129 (170)
142 PF13524 Glyco_trans_1_2: Glyc 94.0 0.47 1E-05 35.8 8.3 66 357-434 9-74 (92)
143 COG3914 Spy Predicted O-linked 93.2 0.4 8.7E-06 48.0 8.3 106 277-384 427-543 (620)
144 PHA01630 putative group 1 glyc 93.2 3.9 8.5E-05 39.3 15.1 77 338-423 196-295 (331)
145 PRK10964 ADP-heptose:LPS hepto 93.0 8.7 0.00019 36.7 18.1 46 6-51 1-47 (322)
146 PF01975 SurE: Survival protei 92.7 0.17 3.8E-06 44.3 4.5 42 6-49 1-42 (196)
147 PLN02939 transferase, transfer 92.2 3.5 7.6E-05 44.8 14.1 134 281-421 780-930 (977)
148 TIGR02400 trehalose_OtsA alpha 92.1 2.4 5.1E-05 42.8 12.3 105 336-466 340-455 (456)
149 PF13439 Glyco_transf_4: Glyco 90.4 1.1 2.4E-05 37.9 7.2 30 15-45 11-40 (177)
150 COG1618 Predicted nucleotide k 90.1 1.2 2.7E-05 37.2 6.5 59 1-65 1-59 (179)
151 PRK14099 glycogen synthase; Pr 88.5 9.5 0.00021 38.9 13.3 145 281-433 296-458 (485)
152 PF12000 Glyco_trans_4_3: Gkyc 88.1 7.2 0.00016 33.3 10.2 29 117-145 66-95 (171)
153 KOG2941 Beta-1,4-mannosyltrans 87.7 26 0.00056 33.4 27.3 62 3-67 10-71 (444)
154 TIGR03713 acc_sec_asp1 accesso 87.4 3.2 6.9E-05 42.6 9.0 93 332-441 409-507 (519)
155 PRK02261 methylaspartate mutas 87.3 1.5 3.3E-05 35.9 5.5 59 5-65 3-61 (137)
156 TIGR02919 accessory Sec system 87.3 19 0.0004 36.1 14.1 124 278-423 282-412 (438)
157 cd03788 GT1_TPS Trehalose-6-Ph 86.8 3.4 7.4E-05 41.8 8.9 104 336-465 345-459 (460)
158 COG0003 ArsA Predicted ATPase 86.2 8.1 0.00018 36.8 10.4 41 5-46 1-42 (322)
159 PF04413 Glycos_transf_N: 3-De 86.1 3.7 8.1E-05 35.7 7.6 101 7-146 22-126 (186)
160 TIGR00715 precor6x_red precorr 84.1 8.4 0.00018 35.4 9.2 90 7-144 2-98 (256)
161 COG0496 SurE Predicted acid ph 84.1 7.2 0.00016 35.4 8.5 39 7-49 2-41 (252)
162 PRK13932 stationary phase surv 83.9 14 0.00031 33.8 10.5 41 4-48 4-45 (257)
163 PLN03063 alpha,alpha-trehalose 83.8 7.3 0.00016 42.3 10.0 107 339-470 363-480 (797)
164 PRK02797 4-alpha-L-fucosyltran 83.7 36 0.00079 32.0 13.0 129 282-420 147-292 (322)
165 PRK12342 hypothetical protein; 83.7 8.4 0.00018 35.3 9.0 40 100-146 99-144 (254)
166 PRK09620 hypothetical protein; 83.6 3.6 7.8E-05 37.1 6.6 37 6-43 4-52 (229)
167 cd02067 B12-binding B12 bindin 83.2 2.1 4.7E-05 34.0 4.5 41 7-48 1-41 (119)
168 COG2894 MinD Septum formation 83.0 5 0.00011 35.5 6.7 39 5-44 1-41 (272)
169 PF02844 GARS_N: Phosphoribosy 82.7 5.5 0.00012 30.5 6.2 87 6-143 1-91 (100)
170 cd03793 GT1_Glycogen_synthase_ 82.5 5.4 0.00012 40.9 7.9 79 341-423 467-553 (590)
171 PRK03359 putative electron tra 81.2 11 0.00023 34.7 8.7 40 100-146 102-147 (256)
172 PRK02155 ppnK NAD(+)/NADH kina 80.6 10 0.00022 35.6 8.6 96 295-423 21-120 (291)
173 PRK08305 spoVFB dipicolinate s 79.8 3.2 6.9E-05 36.3 4.6 48 1-49 1-48 (196)
174 PF00551 Formyl_trans_N: Formy 78.4 10 0.00023 32.7 7.5 106 6-147 1-110 (181)
175 PF02441 Flavoprotein: Flavopr 77.6 3.2 6.9E-05 33.7 3.8 44 6-51 1-44 (129)
176 TIGR02398 gluc_glyc_Psyn gluco 77.5 87 0.0019 31.9 15.7 113 333-470 363-485 (487)
177 PF07429 Glyco_transf_56: 4-al 76.8 69 0.0015 30.7 12.6 131 281-421 185-332 (360)
178 PRK14501 putative bifunctional 76.8 11 0.00023 40.7 8.5 111 334-469 344-464 (726)
179 PF01012 ETF: Electron transfe 76.7 12 0.00027 31.6 7.4 105 8-144 2-120 (164)
180 PRK13933 stationary phase surv 76.0 34 0.00074 31.3 10.2 37 7-47 2-39 (253)
181 TIGR00087 surE 5'/3'-nucleotid 76.0 14 0.00031 33.6 7.8 39 7-49 2-41 (244)
182 PRK05973 replicative DNA helic 75.8 14 0.0003 33.5 7.7 43 7-50 66-108 (237)
183 PRK04885 ppnK inorganic polyph 75.3 6.3 0.00014 36.4 5.5 52 352-423 37-94 (265)
184 PF04127 DFP: DNA / pantothena 75.3 1.5 3.2E-05 38.1 1.3 38 6-44 4-53 (185)
185 COG1703 ArgK Putative periplas 75.2 19 0.00041 33.6 8.3 119 7-145 53-173 (323)
186 PRK05647 purN phosphoribosylgl 75.1 21 0.00046 31.4 8.5 105 5-147 1-111 (200)
187 PF02951 GSH-S_N: Prokaryotic 73.2 6.2 0.00013 31.4 4.2 39 6-45 1-42 (119)
188 PF02310 B12-binding: B12 bind 73.0 9 0.0002 30.3 5.3 39 6-45 1-39 (121)
189 PF04464 Glyphos_transf: CDP-G 72.9 7.5 0.00016 37.9 5.8 140 303-462 224-368 (369)
190 PRK08057 cobalt-precorrin-6x r 72.6 40 0.00086 30.8 9.9 91 5-145 2-99 (248)
191 PF05159 Capsule_synth: Capsul 72.3 30 0.00064 32.0 9.4 78 298-378 144-226 (269)
192 COG0438 RfaG Glycosyltransfera 71.5 87 0.0019 29.1 15.8 130 281-423 200-343 (381)
193 COG4370 Uncharacterized protei 71.3 33 0.00071 32.0 8.8 65 361-434 320-387 (412)
194 smart00851 MGS MGS-like domain 71.1 22 0.00047 26.6 6.7 80 22-143 2-90 (90)
195 cd01424 MGS_CPS_II Methylglyox 70.4 30 0.00064 26.9 7.6 84 17-143 10-100 (110)
196 PRK13789 phosphoribosylamine-- 69.3 15 0.00034 36.6 7.1 36 4-45 3-38 (426)
197 PRK14098 glycogen synthase; Pr 69.2 6.5 0.00014 40.1 4.5 41 1-44 1-49 (489)
198 PRK06849 hypothetical protein; 68.7 26 0.00056 34.5 8.5 37 4-45 3-39 (389)
199 PRK02649 ppnK inorganic polyph 68.2 8 0.00017 36.5 4.5 53 351-423 69-125 (305)
200 PRK00346 surE 5'(3')-nucleotid 68.2 36 0.00079 31.1 8.6 26 21-48 15-40 (250)
201 PRK07313 phosphopantothenoylcy 67.4 7.7 0.00017 33.6 4.0 45 5-51 1-45 (182)
202 COG2185 Sbm Methylmalonyl-CoA 67.4 11 0.00024 30.9 4.6 46 4-50 11-56 (143)
203 PRK05595 replicative DNA helic 67.4 35 0.00075 34.3 9.2 42 8-50 204-246 (444)
204 PRK14077 pnk inorganic polypho 66.9 12 0.00026 35.0 5.4 53 351-423 65-121 (287)
205 PF02142 MGS: MGS-like domain 66.8 6.4 0.00014 29.8 3.0 85 22-143 2-95 (95)
206 PF02571 CbiJ: Precorrin-6x re 66.7 50 0.0011 30.3 9.2 93 6-145 1-100 (249)
207 PRK06029 3-octaprenyl-4-hydrox 66.6 7.9 0.00017 33.6 3.8 45 5-51 1-46 (185)
208 PRK08760 replicative DNA helic 66.4 32 0.0007 34.9 8.8 41 8-49 232-273 (476)
209 PF06925 MGDG_synth: Monogalac 66.2 10 0.00022 32.3 4.5 44 96-146 75-124 (169)
210 cd01980 Chlide_reductase_Y Chl 65.1 44 0.00095 33.3 9.3 32 104-145 344-375 (416)
211 COG1066 Sms Predicted ATP-depe 65.0 32 0.0007 33.7 7.8 42 7-50 95-136 (456)
212 cd02070 corrinoid_protein_B12- 64.8 14 0.00031 32.5 5.3 43 5-48 82-124 (201)
213 PF06506 PrpR_N: Propionate ca 64.6 15 0.00032 31.6 5.2 71 347-422 31-124 (176)
214 PRK06321 replicative DNA helic 64.5 54 0.0012 33.3 9.8 42 8-50 229-271 (472)
215 PF03796 DnaB_C: DnaB-like hel 64.0 19 0.00042 33.1 6.2 42 8-50 22-64 (259)
216 TIGR02370 pyl_corrinoid methyl 64.0 16 0.00035 32.1 5.4 59 5-65 84-142 (197)
217 PRK06988 putative formyltransf 63.7 56 0.0012 31.1 9.3 34 5-44 2-35 (312)
218 PRK13935 stationary phase surv 63.6 45 0.00098 30.5 8.3 39 7-48 2-40 (253)
219 PRK13931 stationary phase surv 63.6 45 0.00097 30.8 8.3 30 117-146 87-129 (261)
220 cd01974 Nitrogenase_MoFe_beta 63.4 70 0.0015 32.1 10.5 35 101-145 368-402 (435)
221 TIGR02015 BchY chlorophyllide 62.9 29 0.00062 34.6 7.5 90 7-145 287-380 (422)
222 cd02071 MM_CoA_mut_B12_BD meth 62.9 15 0.00033 29.3 4.7 41 7-48 1-41 (122)
223 PRK04539 ppnK inorganic polyph 62.8 15 0.00032 34.6 5.2 53 351-423 69-125 (296)
224 PRK06067 flagellar accessory p 62.7 17 0.00037 32.8 5.6 43 6-49 26-68 (234)
225 COG1484 DnaC DNA replication p 62.6 11 0.00023 34.8 4.1 46 5-51 105-150 (254)
226 cd00532 MGS-like MGS-like doma 62.4 49 0.0011 25.8 7.4 85 18-144 10-105 (112)
227 COG2086 FixA Electron transfer 62.3 57 0.0012 30.0 8.7 40 99-145 100-145 (260)
228 TIGR01285 nifN nitrogenase mol 62.2 48 0.001 33.2 9.0 88 5-145 311-398 (432)
229 cd01715 ETF_alpha The electron 61.8 87 0.0019 26.5 9.5 41 98-145 71-114 (168)
230 PRK01911 ppnK inorganic polyph 61.3 13 0.00029 34.8 4.6 52 352-423 66-121 (292)
231 TIGR02655 circ_KaiC circadian 61.1 16 0.00035 37.2 5.5 45 6-51 264-308 (484)
232 KOG3339 Predicted glycosyltran 61.0 24 0.00051 30.3 5.4 23 10-32 42-64 (211)
233 PRK09165 replicative DNA helic 60.8 56 0.0012 33.4 9.3 43 8-51 220-277 (497)
234 PRK06732 phosphopantothenate-- 60.7 8.5 0.00019 34.7 3.1 37 6-43 1-49 (229)
235 PRK03372 ppnK inorganic polyph 60.5 17 0.00036 34.5 5.1 53 351-423 73-129 (306)
236 COG2099 CobK Precorrin-6x redu 60.2 1E+02 0.0022 28.1 9.7 92 5-144 2-99 (257)
237 TIGR01283 nifE nitrogenase mol 59.6 86 0.0019 31.7 10.4 35 100-144 385-419 (456)
238 TIGR01501 MthylAspMutase methy 59.6 22 0.00047 29.0 4.9 58 6-65 2-59 (134)
239 cd00550 ArsA_ATPase Oxyanion-t 58.8 28 0.0006 32.0 6.2 37 8-45 3-39 (254)
240 PRK06249 2-dehydropantoate 2-r 58.6 22 0.00047 33.8 5.7 50 1-62 1-50 (313)
241 TIGR00460 fmt methionyl-tRNA f 58.5 75 0.0016 30.2 9.3 33 6-44 1-33 (313)
242 PF07355 GRDB: Glycine/sarcosi 57.8 23 0.0005 33.8 5.4 43 96-145 66-118 (349)
243 cd01423 MGS_CPS_I_III Methylgl 57.5 76 0.0016 24.9 7.8 87 18-143 11-106 (116)
244 PF12146 Hydrolase_4: Putative 57.5 30 0.00065 25.1 5.0 35 6-41 16-50 (79)
245 PRK03378 ppnK inorganic polyph 57.4 19 0.00042 33.8 4.9 53 351-423 64-120 (292)
246 TIGR02195 heptsyl_trn_II lipop 57.4 85 0.0019 30.0 9.7 99 6-146 175-278 (334)
247 PRK11199 tyrA bifunctional cho 57.3 89 0.0019 30.6 9.8 35 4-44 97-132 (374)
248 PRK01185 ppnK inorganic polyph 57.2 21 0.00045 33.1 5.1 53 351-423 53-106 (271)
249 PRK13982 bifunctional SbtC-lik 57.1 11 0.00024 37.9 3.5 39 5-44 256-306 (475)
250 cd01985 ETF The electron trans 56.7 71 0.0015 27.4 8.2 39 99-144 80-121 (181)
251 PRK08506 replicative DNA helic 56.7 70 0.0015 32.5 9.2 42 8-50 195-236 (472)
252 PRK07206 hypothetical protein; 56.5 41 0.00089 33.4 7.5 33 6-44 3-35 (416)
253 PRK05920 aromatic acid decarbo 56.0 17 0.00037 32.0 4.1 45 5-51 3-47 (204)
254 cd00984 DnaB_C DnaB helicase C 56.0 1E+02 0.0022 27.7 9.6 43 8-51 16-59 (242)
255 PRK08006 replicative DNA helic 55.8 1.3E+02 0.0028 30.6 10.8 41 8-49 227-268 (471)
256 PRK13934 stationary phase surv 55.8 94 0.002 28.7 8.9 39 7-48 2-40 (266)
257 TIGR03600 phage_DnaB phage rep 55.6 1.2E+02 0.0027 30.1 10.7 41 8-49 197-238 (421)
258 PRK03501 ppnK inorganic polyph 55.5 25 0.00054 32.5 5.3 53 352-423 41-98 (264)
259 PHA02542 41 41 helicase; Provi 55.1 80 0.0017 32.0 9.2 41 8-49 193-233 (473)
260 PRK10916 ADP-heptose:LPS hepto 55.0 1.2E+02 0.0026 29.3 10.3 103 6-146 181-288 (348)
261 PLN02470 acetolactate synthase 54.8 45 0.00098 34.9 7.7 29 349-377 75-109 (585)
262 PRK13195 pyrrolidone-carboxyla 54.7 37 0.00081 30.4 6.0 27 5-31 1-29 (222)
263 cd02069 methionine_synthase_B1 54.7 28 0.0006 31.0 5.3 45 4-49 87-131 (213)
264 PF01210 NAD_Gly3P_dh_N: NAD-d 54.6 12 0.00025 31.5 2.8 32 7-44 1-32 (157)
265 PRK12446 undecaprenyldiphospho 54.5 64 0.0014 31.3 8.3 108 280-390 3-133 (352)
266 PRK01231 ppnK inorganic polyph 54.2 21 0.00045 33.6 4.6 52 352-423 64-119 (295)
267 PRK06749 replicative DNA helic 54.1 80 0.0017 31.6 8.9 42 8-50 189-230 (428)
268 COG1422 Predicted membrane pro 53.4 45 0.00099 29.0 6.0 46 412-463 60-105 (201)
269 cd01421 IMPCH Inosine monophos 53.1 44 0.00096 28.9 6.0 39 19-65 10-48 (187)
270 PRK14075 pnk inorganic polypho 52.9 29 0.00062 32.0 5.2 53 351-423 42-95 (256)
271 PRK13196 pyrrolidone-carboxyla 52.9 45 0.00098 29.6 6.3 27 5-31 1-29 (211)
272 cd00561 CobA_CobO_BtuR ATP:cor 52.5 1.4E+02 0.0031 25.1 10.6 33 7-40 4-36 (159)
273 PRK05636 replicative DNA helic 52.4 75 0.0016 32.6 8.6 41 8-49 268-309 (505)
274 COG0052 RpsB Ribosomal protein 52.3 87 0.0019 28.4 7.8 31 118-148 157-189 (252)
275 PRK07773 replicative DNA helic 52.2 96 0.0021 34.4 10.0 43 8-50 220-262 (886)
276 PLN02929 NADH kinase 52.2 32 0.00069 32.4 5.4 98 293-423 32-138 (301)
277 TIGR00725 conserved hypothetic 51.3 1.1E+02 0.0024 25.7 8.2 101 265-378 19-123 (159)
278 TIGR02852 spore_dpaB dipicolin 50.7 24 0.00053 30.6 4.1 40 7-47 2-41 (187)
279 PRK03708 ppnK inorganic polyph 50.4 26 0.00056 32.7 4.6 53 351-423 58-113 (277)
280 COG0859 RfaF ADP-heptose:LPS h 50.2 91 0.002 29.9 8.5 99 6-147 176-279 (334)
281 COG0541 Ffh Signal recognition 50.1 46 0.00099 32.9 6.2 43 4-47 99-141 (451)
282 PRK14478 nitrogenase molybdenu 50.1 1.3E+02 0.0028 30.6 9.9 34 101-144 384-417 (475)
283 PRK14076 pnk inorganic polypho 50.0 26 0.00057 36.5 5.0 53 351-423 349-405 (569)
284 cd01121 Sms Sms (bacterial rad 50.0 73 0.0016 31.2 7.8 41 8-49 85-125 (372)
285 PLN02935 Bifunctional NADH kin 49.7 28 0.00061 35.1 4.9 52 351-423 263-319 (508)
286 COG0223 Fmt Methionyl-tRNA for 49.6 34 0.00073 32.3 5.1 36 5-46 1-36 (307)
287 TIGR00665 DnaB replicative DNA 49.4 1.1E+02 0.0024 30.6 9.3 43 8-50 198-240 (434)
288 PF02571 CbiJ: Precorrin-6x re 49.3 1.2E+02 0.0025 27.8 8.6 104 22-145 118-226 (249)
289 cd07039 TPP_PYR_POX Pyrimidine 48.7 54 0.0012 27.8 5.9 27 351-377 64-96 (164)
290 cd07038 TPP_PYR_PDC_IPDC_like 48.6 35 0.00076 28.8 4.8 28 351-378 60-93 (162)
291 PF05728 UPF0227: Uncharacteri 48.4 37 0.0008 29.5 5.0 43 99-148 46-91 (187)
292 PRK14477 bifunctional nitrogen 48.3 1.5E+02 0.0033 33.0 10.7 36 101-146 380-415 (917)
293 PF01075 Glyco_transf_9: Glyco 48.2 75 0.0016 28.7 7.3 99 5-147 105-211 (247)
294 PRK02231 ppnK inorganic polyph 48.1 37 0.00081 31.5 5.2 57 343-421 37-97 (272)
295 PRK10867 signal recognition pa 48.1 1.4E+02 0.003 29.9 9.5 41 7-48 102-143 (433)
296 PF07302 AroM: AroM protein; 48.0 70 0.0015 28.6 6.6 29 117-145 178-209 (221)
297 PF01075 Glyco_transf_9: Glyco 48.0 29 0.00063 31.4 4.6 95 278-376 104-208 (247)
298 PF10649 DUF2478: Protein of u 47.4 1.7E+02 0.0037 24.6 10.0 120 10-147 3-132 (159)
299 PF05225 HTH_psq: helix-turn-h 47.4 34 0.00073 21.8 3.4 27 408-437 1-27 (45)
300 cd01968 Nitrogenase_NifE_I Nit 46.9 1.7E+02 0.0037 29.0 10.1 34 101-144 347-380 (410)
301 KOG0780 Signal recognition par 46.7 40 0.00087 32.7 5.1 43 5-48 101-143 (483)
302 COG2099 CobK Precorrin-6x redu 46.7 1.1E+02 0.0023 28.0 7.5 101 23-144 118-228 (257)
303 PRK11823 DNA repair protein Ra 46.3 85 0.0019 31.6 7.8 42 7-49 82-123 (446)
304 PRK08840 replicative DNA helic 45.9 2.2E+02 0.0048 28.8 10.7 41 8-49 220-261 (464)
305 cd01124 KaiC KaiC is a circadi 45.8 44 0.00095 28.6 5.2 42 8-50 2-43 (187)
306 PRK05748 replicative DNA helic 45.7 2.2E+02 0.0048 28.7 10.8 42 8-50 206-248 (448)
307 PRK05784 phosphoribosylamine-- 45.7 1.2E+02 0.0027 30.8 8.9 32 6-42 1-33 (486)
308 TIGR03880 KaiC_arch_3 KaiC dom 45.5 77 0.0017 28.3 6.8 44 7-51 18-61 (224)
309 COG1748 LYS9 Saccharopine dehy 45.5 1.2E+02 0.0026 29.8 8.3 53 5-65 1-55 (389)
310 TIGR01917 gly_red_sel_B glycin 45.4 43 0.00093 32.9 5.2 43 96-145 62-114 (431)
311 TIGR01918 various_sel_PB selen 45.4 43 0.00094 32.9 5.3 43 96-145 62-114 (431)
312 PF09314 DUF1972: Domain of un 45.3 2.1E+02 0.0045 24.9 9.9 59 5-67 1-64 (185)
313 TIGR00421 ubiX_pad polyprenyl 45.2 26 0.00055 30.3 3.4 42 7-50 1-42 (181)
314 COG0467 RAD55 RecA-superfamily 44.1 33 0.00071 31.6 4.3 45 6-51 24-68 (260)
315 PF00282 Pyridoxal_deC: Pyrido 44.0 57 0.0012 31.9 6.1 69 352-422 105-191 (373)
316 COG1797 CobB Cobyrinic acid a, 43.8 1.2E+02 0.0026 30.1 7.9 32 8-40 3-35 (451)
317 KOG0853 Glycosyltransferase [C 43.7 20 0.00043 36.1 2.8 102 294-423 328-434 (495)
318 PRK13197 pyrrolidone-carboxyla 43.7 81 0.0018 28.1 6.5 27 5-31 1-29 (215)
319 PRK13059 putative lipid kinase 43.5 97 0.0021 29.1 7.4 27 352-378 58-90 (295)
320 PRK07004 replicative DNA helic 43.0 1.7E+02 0.0036 29.7 9.3 42 8-50 216-258 (460)
321 PRK06027 purU formyltetrahydro 42.8 2.5E+02 0.0055 26.3 9.9 104 4-146 88-195 (286)
322 PRK08462 biotin carboxylase; V 42.6 2.3E+02 0.005 28.4 10.4 37 3-45 2-38 (445)
323 PRK00005 fmt methionyl-tRNA fo 42.5 2.2E+02 0.0047 27.0 9.6 32 6-43 1-32 (309)
324 PRK13011 formyltetrahydrofolat 42.5 1.6E+02 0.0035 27.6 8.5 104 4-146 88-195 (286)
325 cd07037 TPP_PYR_MenD Pyrimidin 42.3 54 0.0012 27.7 4.9 27 351-377 61-93 (162)
326 PRK06395 phosphoribosylamine-- 42.2 1.5E+02 0.0032 29.8 8.8 32 5-42 2-33 (435)
327 PRK02910 light-independent pro 41.9 39 0.00085 34.8 4.8 26 117-145 362-387 (519)
328 PF01695 IstB_IS21: IstB-like 41.2 33 0.00071 29.6 3.5 46 5-51 47-92 (178)
329 PLN02331 phosphoribosylglycina 41.0 2E+02 0.0043 25.5 8.4 40 101-147 69-109 (207)
330 TIGR02113 coaC_strep phosphopa 41.0 35 0.00076 29.3 3.7 42 7-50 2-43 (177)
331 PF03808 Glyco_tran_WecB: Glyc 41.0 2.3E+02 0.0049 24.1 11.5 86 217-318 51-136 (172)
332 cd02065 B12-binding_like B12 b 40.9 55 0.0012 25.8 4.7 40 8-48 2-41 (125)
333 PF09001 DUF1890: Domain of un 40.8 34 0.00073 27.8 3.2 33 20-53 14-46 (139)
334 cd07035 TPP_PYR_POX_like Pyrim 40.4 75 0.0016 26.3 5.6 28 351-378 60-93 (155)
335 PF02374 ArsA_ATPase: Anion-tr 40.3 38 0.00082 32.1 4.1 40 7-47 2-42 (305)
336 PRK11519 tyrosine kinase; Prov 40.3 4.4E+02 0.0095 28.5 12.6 40 4-44 524-565 (719)
337 TIGR00416 sms DNA repair prote 40.2 1E+02 0.0022 31.1 7.3 43 7-50 96-138 (454)
338 TIGR00708 cobA cob(I)alamin ad 39.9 2.4E+02 0.0052 24.2 11.2 35 5-40 5-39 (173)
339 PF07015 VirC1: VirC1 protein; 39.6 69 0.0015 28.9 5.3 42 6-48 2-44 (231)
340 TIGR03878 thermo_KaiC_2 KaiC d 39.5 3E+02 0.0066 25.2 11.9 38 7-45 38-75 (259)
341 PRK08125 bifunctional UDP-gluc 39.5 2.4E+02 0.0052 30.1 10.4 41 102-149 67-108 (660)
342 PF05693 Glycogen_syn: Glycoge 39.5 48 0.001 34.3 4.8 93 341-440 462-566 (633)
343 COG4088 Predicted nucleotide k 39.5 38 0.00082 29.9 3.5 36 6-42 2-37 (261)
344 PRK06904 replicative DNA helic 39.4 3E+02 0.0065 28.0 10.5 43 8-50 224-266 (472)
345 PRK00784 cobyric acid synthase 39.4 3.1E+02 0.0067 28.0 10.7 36 6-42 3-39 (488)
346 TIGR02700 flavo_MJ0208 archaeo 39.3 42 0.00092 30.4 4.1 43 8-51 2-46 (234)
347 TIGR02699 archaeo_AfpA archaeo 39.1 43 0.00093 28.7 3.8 43 8-51 2-45 (174)
348 PF01470 Peptidase_C15: Pyrogl 39.1 86 0.0019 27.6 5.9 26 6-31 1-28 (202)
349 CHL00076 chlB photochlorophyll 38.9 45 0.00097 34.3 4.6 34 102-145 366-399 (513)
350 PRK10964 ADP-heptose:LPS hepto 38.7 2.8E+02 0.0061 26.2 10.0 28 117-146 253-280 (322)
351 PRK04940 hypothetical protein; 38.6 90 0.0019 26.9 5.7 32 117-148 60-92 (180)
352 COG0287 TyrA Prephenate dehydr 38.5 60 0.0013 30.3 5.0 41 5-51 3-43 (279)
353 TIGR01278 DPOR_BchB light-inde 38.5 42 0.00091 34.5 4.4 27 117-146 364-390 (511)
354 PF06564 YhjQ: YhjQ protein; 38.4 56 0.0012 29.7 4.7 39 5-44 1-40 (243)
355 PRK05986 cob(I)alamin adenolsy 38.3 2.7E+02 0.0059 24.3 11.4 36 5-41 22-57 (191)
356 cd01981 Pchlide_reductase_B Pc 38.3 51 0.0011 33.0 4.9 34 102-145 362-395 (430)
357 cd07025 Peptidase_S66 LD-Carbo 37.9 66 0.0014 30.1 5.3 76 291-380 45-122 (282)
358 PRK08591 acetyl-CoA carboxylas 37.9 2.8E+02 0.0061 27.8 10.2 34 5-44 2-35 (451)
359 PRK08322 acetolactate synthase 37.8 1.1E+02 0.0024 31.7 7.5 27 351-377 64-96 (547)
360 PRK00881 purH bifunctional pho 37.8 97 0.0021 31.5 6.5 49 5-65 4-52 (513)
361 PRK06276 acetolactate synthase 37.7 1.1E+02 0.0023 32.2 7.3 27 351-377 64-96 (586)
362 COG0297 GlgA Glycogen synthase 37.7 4.6E+02 0.01 26.8 13.3 167 281-467 295-477 (487)
363 PRK06719 precorrin-2 dehydroge 37.6 61 0.0013 27.2 4.5 34 5-44 13-46 (157)
364 cd03466 Nitrogenase_NifN_2 Nit 37.3 53 0.0011 32.9 4.8 35 101-145 363-397 (429)
365 KOG2825 Putative arsenite-tran 37.3 1.5E+02 0.0034 27.1 7.0 44 3-47 16-60 (323)
366 COG2910 Putative NADH-flavin r 37.2 30 0.00065 29.9 2.5 34 7-45 2-35 (211)
367 cd01965 Nitrogenase_MoFe_beta_ 37.2 48 0.001 33.1 4.5 35 101-145 362-396 (428)
368 PRK08155 acetolactate synthase 37.1 1.6E+02 0.0035 30.6 8.6 27 351-377 77-109 (564)
369 TIGR00639 PurN phosphoribosylg 36.9 2E+02 0.0044 25.0 7.8 103 6-147 1-110 (190)
370 PF07991 IlvN: Acetohydroxy ac 36.9 47 0.001 28.0 3.6 49 5-64 4-54 (165)
371 PRK08229 2-dehydropantoate 2-r 36.8 45 0.00097 32.1 4.1 41 5-51 2-42 (341)
372 PRK05234 mgsA methylglyoxal sy 36.3 2.4E+02 0.0053 23.2 8.5 96 5-144 4-112 (142)
373 TIGR02201 heptsyl_trn_III lipo 36.3 3.9E+02 0.0085 25.5 10.8 27 118-146 261-287 (344)
374 PLN02735 carbamoyl-phosphate s 36.2 2.5E+02 0.0055 32.1 10.3 40 4-44 22-67 (1102)
375 TIGR00750 lao LAO/AO transport 36.1 1.5E+02 0.0033 27.9 7.5 40 5-45 34-73 (300)
376 TIGR00640 acid_CoA_mut_C methy 36.0 91 0.002 25.3 5.1 41 5-46 2-42 (132)
377 TIGR01286 nifK nitrogenase mol 36.0 51 0.0011 33.9 4.5 26 117-145 437-462 (515)
378 PRK12767 carbamoyl phosphate s 35.9 2E+02 0.0043 27.2 8.5 33 5-44 1-35 (326)
379 TIGR02114 coaB_strep phosphopa 35.6 31 0.00068 31.0 2.6 34 7-41 1-46 (227)
380 PRK12921 2-dehydropantoate 2-r 35.5 57 0.0012 30.7 4.6 39 7-51 2-40 (305)
381 COG3245 CycB Cytochrome c5 [En 35.4 21 0.00046 27.9 1.2 51 367-419 60-121 (126)
382 PRK09302 circadian clock prote 35.4 51 0.0011 33.9 4.4 44 6-50 274-317 (509)
383 PF06506 PrpR_N: Propionate ca 35.4 49 0.0011 28.3 3.7 118 17-148 17-153 (176)
384 PRK00994 F420-dependent methyl 35.0 79 0.0017 28.4 4.8 42 101-149 51-98 (277)
385 COG2085 Predicted dinucleotide 34.9 71 0.0015 28.3 4.5 35 5-45 1-35 (211)
386 cd01976 Nitrogenase_MoFe_alpha 34.8 46 0.001 33.2 3.9 36 100-145 359-394 (421)
387 smart00046 DAGKc Diacylglycero 34.8 35 0.00076 27.3 2.5 28 353-380 52-88 (124)
388 COG1763 MobB Molybdopterin-gua 34.8 75 0.0016 26.8 4.6 38 6-44 2-40 (161)
389 PRK07525 sulfoacetaldehyde ace 34.5 1.7E+02 0.0037 30.7 8.3 27 351-377 69-101 (588)
390 PF03308 ArgK: ArgK protein; 34.3 3E+02 0.0064 25.4 8.5 119 7-146 31-152 (266)
391 KOG1250 Threonine/serine dehyd 34.1 4.2E+02 0.0091 26.1 9.7 62 354-423 248-317 (457)
392 PRK05579 bifunctional phosphop 34.1 62 0.0013 32.0 4.6 46 4-51 5-50 (399)
393 TIGR00730 conserved hypothetic 33.8 2.6E+02 0.0057 24.0 7.9 102 265-377 20-133 (178)
394 TIGR00147 lipid kinase, YegS/R 33.6 1.8E+02 0.004 27.1 7.6 28 351-378 58-91 (293)
395 PRK14099 glycogen synthase; Pr 33.4 68 0.0015 32.7 4.9 38 4-44 2-47 (485)
396 TIGR00521 coaBC_dfp phosphopan 33.2 55 0.0012 32.3 4.0 45 5-51 3-47 (390)
397 COG3660 Predicted nucleoside-d 33.2 4E+02 0.0086 24.7 19.6 75 300-376 189-271 (329)
398 TIGR00514 accC acetyl-CoA carb 33.1 4.2E+02 0.0091 26.6 10.6 33 5-43 2-34 (449)
399 cd03789 GT1_LPS_heptosyltransf 33.1 1.8E+02 0.0039 26.8 7.5 86 20-146 140-225 (279)
400 PRK13604 luxD acyl transferase 33.1 84 0.0018 29.8 5.0 35 5-40 36-70 (307)
401 PRK06522 2-dehydropantoate 2-r 32.9 58 0.0012 30.6 4.1 39 7-51 2-41 (304)
402 COG3340 PepE Peptidase E [Amin 32.7 3.6E+02 0.0078 24.0 8.9 47 267-314 22-68 (224)
403 TIGR00355 purH phosphoribosyla 32.6 1.2E+02 0.0026 30.7 6.3 46 19-75 10-55 (511)
404 cd07062 Peptidase_S66_mccF_lik 32.6 79 0.0017 30.0 4.9 75 292-380 50-126 (308)
405 COG2109 BtuR ATP:corrinoid ade 32.6 3.4E+02 0.0074 23.7 9.5 33 8-41 31-63 (198)
406 PF00070 Pyr_redox: Pyridine n 32.5 1.4E+02 0.003 21.4 5.2 23 21-44 10-32 (80)
407 COG0801 FolK 7,8-dihydro-6-hyd 32.4 1.6E+02 0.0036 24.8 6.1 34 281-314 3-37 (160)
408 PRK11914 diacylglycerol kinase 32.3 1.3E+02 0.0029 28.4 6.5 68 294-378 25-96 (306)
409 TIGR00347 bioD dethiobiotin sy 32.2 2.2E+02 0.0047 23.8 7.2 28 12-40 5-32 (166)
410 cd01141 TroA_d Periplasmic bin 32.1 69 0.0015 27.5 4.2 29 117-145 69-99 (186)
411 cd02072 Glm_B12_BD B12 binding 32.1 90 0.0019 25.2 4.4 42 7-49 1-42 (128)
412 PRK13185 chlL protochlorophyll 32.0 73 0.0016 29.4 4.6 36 7-43 4-39 (270)
413 PRK10037 cell division protein 32.0 75 0.0016 29.0 4.6 38 6-44 2-40 (250)
414 cd01425 RPS2 Ribosomal protein 31.9 1.7E+02 0.0037 25.5 6.6 32 117-148 127-160 (193)
415 PRK13193 pyrrolidone-carboxyla 31.7 1.9E+02 0.0041 25.7 6.8 25 7-31 2-28 (209)
416 TIGR01470 cysG_Nterm siroheme 31.6 3.6E+02 0.0079 23.7 10.1 149 278-443 9-165 (205)
417 TIGR00959 ffh signal recogniti 31.4 3.6E+02 0.0079 27.0 9.4 40 7-47 101-141 (428)
418 cd03114 ArgK-like The function 31.4 3E+02 0.0065 22.7 10.4 36 8-44 2-37 (148)
419 PRK13194 pyrrolidone-carboxyla 31.3 1.7E+02 0.0036 26.0 6.4 26 6-31 1-28 (208)
420 PF10093 DUF2331: Uncharacteri 31.2 1.2E+02 0.0027 29.5 5.9 84 288-374 188-286 (374)
421 TIGR01369 CPSaseII_lrg carbamo 31.2 2.9E+02 0.0062 31.5 9.7 39 5-44 554-598 (1050)
422 PLN02727 NAD kinase 31.1 88 0.0019 34.2 5.3 53 351-423 744-800 (986)
423 KOG1344 Predicted histone deac 30.8 1.6E+02 0.0036 26.3 6.0 44 98-148 236-301 (324)
424 PRK00039 ruvC Holliday junctio 30.6 1.4E+02 0.0031 25.3 5.6 46 95-147 46-106 (164)
425 PRK12815 carB carbamoyl phosph 30.5 4.8E+02 0.01 29.8 11.3 40 4-44 6-51 (1068)
426 COG0503 Apt Adenine/guanine ph 30.5 1.2E+02 0.0026 26.1 5.3 28 117-144 53-82 (179)
427 TIGR01862 N2-ase-Ialpha nitrog 30.4 47 0.001 33.4 3.1 26 117-145 387-412 (443)
428 PF06180 CbiK: Cobalt chelatas 30.3 93 0.002 28.7 4.8 39 280-318 2-43 (262)
429 PRK13768 GTPase; Provisional 30.2 1.6E+02 0.0035 26.9 6.5 37 7-44 4-40 (253)
430 COG3367 Uncharacterized conser 30.0 2.4E+02 0.0052 26.8 7.3 34 15-49 159-192 (339)
431 PLN02240 UDP-glucose 4-epimera 29.8 80 0.0017 30.3 4.7 36 1-41 1-36 (352)
432 PF04244 DPRP: Deoxyribodipyri 29.7 56 0.0012 29.3 3.2 26 18-44 47-72 (224)
433 PRK10422 lipopolysaccharide co 29.6 1.8E+02 0.0039 28.0 7.1 27 118-146 263-289 (352)
434 PRK12815 carB carbamoyl phosph 29.5 3.7E+02 0.0081 30.7 10.2 40 4-44 554-599 (1068)
435 PRK07819 3-hydroxybutyryl-CoA 29.5 67 0.0014 30.1 3.8 39 1-45 1-39 (286)
436 cd01840 SGNH_hydrolase_yrhL_li 29.5 1.7E+02 0.0036 24.1 6.0 38 278-316 50-87 (150)
437 PRK08199 thiamine pyrophosphat 29.5 2.5E+02 0.0054 29.2 8.4 27 351-377 72-104 (557)
438 cd02034 CooC The accessory pro 29.3 1.1E+02 0.0025 24.0 4.6 37 7-44 1-37 (116)
439 PRK04761 ppnK inorganic polyph 29.3 51 0.0011 30.1 2.9 26 352-377 27-56 (246)
440 PF08323 Glyco_transf_5: Starc 29.1 41 0.00088 30.7 2.3 22 22-44 22-43 (245)
441 PRK00885 phosphoribosylamine-- 29.1 1.6E+02 0.0035 29.2 6.8 29 6-40 1-30 (420)
442 PF03641 Lysine_decarbox: Poss 29.0 1.1E+02 0.0025 24.7 4.7 76 299-378 3-92 (133)
443 COG2230 Cfa Cyclopropane fatty 28.9 22 0.00048 33.0 0.5 39 357-396 80-121 (283)
444 COG2874 FlaH Predicted ATPases 28.8 1.1E+02 0.0023 27.3 4.6 36 10-46 33-68 (235)
445 PRK09219 xanthine phosphoribos 28.7 1.1E+02 0.0024 26.7 4.7 29 117-145 50-80 (189)
446 PF14626 RNase_Zc3h12a_2: Zc3h 28.4 72 0.0016 25.2 3.1 32 19-51 9-40 (122)
447 KOG3446 NADH:ubiquinone oxidor 28.3 1.4E+02 0.003 21.9 4.3 47 371-422 50-96 (97)
448 TIGR01284 alt_nitrog_alph nitr 28.2 46 0.001 33.6 2.7 34 102-145 387-420 (457)
449 PF02702 KdpD: Osmosensitive K 28.2 97 0.0021 27.3 4.2 40 5-45 5-44 (211)
450 PRK06270 homoserine dehydrogen 28.1 2.7E+02 0.0059 26.8 7.9 59 341-400 80-150 (341)
451 TIGR00877 purD phosphoribosyla 28.0 3.9E+02 0.0084 26.5 9.3 34 6-45 1-34 (423)
452 PRK06835 DNA replication prote 27.8 75 0.0016 30.5 3.9 45 6-51 184-228 (329)
453 PF04909 Amidohydro_2: Amidohy 27.7 3.2E+02 0.0069 24.7 8.2 127 265-400 86-229 (273)
454 PRK06718 precorrin-2 dehydroge 27.5 4.2E+02 0.0092 23.2 10.7 146 278-443 10-165 (202)
455 cd00861 ProRS_anticodon_short 27.4 1.5E+02 0.0033 21.8 4.9 57 6-65 2-61 (94)
456 PRK12311 rpsB 30S ribosomal pr 27.1 1E+02 0.0022 29.5 4.5 33 117-149 152-186 (326)
457 COG2159 Predicted metal-depend 27.1 3.1E+02 0.0066 25.8 7.8 111 242-366 98-210 (293)
458 PF10820 DUF2543: Protein of u 27.0 1.4E+02 0.003 20.9 3.9 42 414-469 38-79 (81)
459 COG0129 IlvD Dihydroxyacid deh 26.8 4.3E+02 0.0093 27.4 9.0 42 101-149 111-156 (575)
460 PLN00016 RNA-binding protein; 26.7 73 0.0016 31.1 3.8 38 4-44 51-90 (378)
461 PLN02285 methionyl-tRNA formyl 26.7 1.1E+02 0.0023 29.5 4.7 39 102-147 85-124 (334)
462 TIGR01007 eps_fam capsular exo 26.5 1.4E+02 0.0031 26.0 5.3 38 6-44 18-56 (204)
463 PRK08057 cobalt-precorrin-6x r 26.5 4.8E+02 0.01 23.9 8.7 101 23-145 118-222 (248)
464 COG1435 Tdk Thymidine kinase [ 26.5 4.5E+02 0.0097 23.1 9.1 41 4-45 2-43 (201)
465 KOG1210 Predicted 3-ketosphing 26.4 99 0.0021 29.2 4.2 37 4-44 31-67 (331)
466 PRK09435 membrane ATPase/prote 26.3 4.6E+02 0.0099 25.2 8.9 40 6-46 57-96 (332)
467 PF01497 Peripla_BP_2: Peripla 26.3 1E+02 0.0022 27.5 4.4 32 117-148 60-93 (238)
468 PRK07454 short chain dehydroge 26.2 1.3E+02 0.0027 27.0 5.0 39 1-43 1-39 (241)
469 PF05673 DUF815: Protein of un 26.2 2E+02 0.0042 26.3 5.9 61 395-468 185-248 (249)
470 COG0059 IlvC Ketol-acid reduct 26.1 1E+02 0.0022 29.0 4.2 50 5-65 18-69 (338)
471 PF12695 Abhydrolase_5: Alpha/ 26.1 1.5E+02 0.0031 23.7 5.0 33 9-42 2-34 (145)
472 PF02780 Transketolase_C: Tran 26.0 1.1E+02 0.0024 24.2 4.1 35 4-41 8-42 (124)
473 COG0300 DltE Short-chain dehyd 26.0 1.3E+02 0.0028 27.8 4.9 39 2-44 2-40 (265)
474 PF02826 2-Hacid_dh_C: D-isome 26.0 1.3E+02 0.0027 25.8 4.7 104 278-417 36-142 (178)
475 PRK13236 nitrogenase reductase 25.9 1.3E+02 0.0028 28.3 5.1 43 1-44 1-44 (296)
476 cd01147 HemV-2 Metal binding p 25.9 1.1E+02 0.0023 28.0 4.5 30 117-146 74-106 (262)
477 PRK13982 bifunctional SbtC-lik 25.9 93 0.002 31.5 4.3 45 5-51 70-114 (475)
478 PRK08265 short chain dehydroge 25.9 1.2E+02 0.0026 27.6 4.9 39 1-43 1-39 (261)
479 cd03412 CbiK_N Anaerobic cobal 25.9 1.3E+02 0.0029 24.1 4.5 36 280-315 2-39 (127)
480 TIGR03877 thermo_KaiC_1 KaiC d 25.8 99 0.0021 27.9 4.2 43 6-49 22-64 (237)
481 TIGR02853 spore_dpaA dipicolin 25.8 2.7E+02 0.0059 26.1 7.2 24 20-44 11-34 (287)
482 CHL00072 chlL photochlorophyll 25.8 1.2E+02 0.0026 28.5 4.8 37 7-44 2-38 (290)
483 TIGR01369 CPSaseII_lrg carbamo 25.8 5.1E+02 0.011 29.5 10.5 40 4-44 5-50 (1050)
484 PF13450 NAD_binding_8: NAD(P) 25.8 83 0.0018 22.0 2.9 19 22-41 8-26 (68)
485 PRK09739 hypothetical protein; 25.7 1.6E+02 0.0035 25.7 5.4 36 5-41 3-41 (199)
486 cd01977 Nitrogenase_VFe_alpha 25.4 71 0.0015 31.8 3.4 25 117-144 358-382 (415)
487 COG2210 Peroxiredoxin family p 25.3 1.5E+02 0.0032 24.3 4.4 36 9-45 7-42 (137)
488 PRK07313 phosphopantothenoylcy 25.3 4.4E+02 0.0096 22.7 9.3 52 370-422 113-180 (182)
489 PRK14619 NAD(P)H-dependent gly 25.2 1.4E+02 0.0029 28.3 5.2 35 4-44 3-37 (308)
490 PF02558 ApbA: Ketopantoate re 25.0 60 0.0013 26.7 2.5 38 8-51 1-38 (151)
491 PF04493 Endonuclease_5: Endon 24.9 1.2E+02 0.0025 26.9 4.3 43 98-145 75-124 (206)
492 PF14359 DUF4406: Domain of un 24.9 1.1E+02 0.0023 23.1 3.4 28 10-38 2-33 (92)
493 PRK11780 isoprenoid biosynthes 24.8 1.6E+02 0.0034 26.3 5.1 38 6-44 2-43 (217)
494 KOG1111 N-acetylglucosaminyltr 24.7 6.5E+02 0.014 24.6 9.1 83 292-376 208-301 (426)
495 TIGR00745 apbA_panE 2-dehydrop 24.6 68 0.0015 29.8 3.0 34 24-63 5-38 (293)
496 COG4081 Uncharacterized protei 24.5 1.2E+02 0.0027 24.3 3.8 33 15-48 14-46 (148)
497 PRK05294 carB carbamoyl phosph 24.3 3.6E+02 0.0079 30.7 9.0 40 4-44 553-598 (1066)
498 cd05022 S-100A13 S-100A13: S-1 24.3 1.7E+02 0.0038 21.8 4.5 55 404-469 23-77 (89)
499 PRK13230 nitrogenase reductase 24.3 1.3E+02 0.0028 27.9 4.8 38 5-43 1-38 (279)
500 TIGR00228 ruvC crossover junct 24.3 2.1E+02 0.0046 24.0 5.4 46 95-147 42-102 (156)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-64 Score=499.19 Aligned_cols=449 Identities=34% Similarity=0.583 Sum_probs=350.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 047833 3 QRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDS 82 (473)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (473)
..+.||+++|++++||++|++.||+.|+. +|+.|||++++.+...+.+......++++..+|++ ..++++++.+...+
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P-~~~~lPdG~~~~~~ 84 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFP-SHPSIPSGVENVKD 84 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCC-CcCCCCCCCcChhh
Confidence 35789999999999999999999999999 99999999999987766653211146888888876 35678887765554
Q ss_pred CChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccC
Q 047833 83 VPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNL 162 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
.+...+..+......+.+.+.+++++. .. +|+|||+|.+..|+..+|+.+|||++.++++++..+..++++....
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~----~~-~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH----PS-PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC----CC-CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 443334455666666677777777663 12 6799999999999999999999999999999999998888776544
Q ss_pred CCCCC--C-CCcc---cCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHh
Q 047833 163 PHRNM--D-SDEC---VLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKR 236 (473)
Q Consensus 163 p~~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (473)
+.... . .+.. .+|+++. ++..++..+++...........+.+.......++++++||+.+||+.+++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 160 PTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 33211 1 1112 3566655 777788776654322333444454444445567789999999999999999988
Q ss_pred hcC-CCeEEecccCCCccCCC---CCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceE
Q 047833 237 KFG-RSVWPIGPVLLSTENRG---GAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFI 312 (473)
Q Consensus 237 ~~~-~~~~~vGp~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 312 (473)
.++ ++++.|||+........ .........+++|.+||+.++++++|||||||+...+.+++.+++.+|+..+.+||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 765 68999999975431110 00000111356899999999889999999999999999999999999999999999
Q ss_pred EEECCCCC------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhh
Q 047833 313 WVVRPPIG------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYN 385 (473)
Q Consensus 313 ~~~~~~~~------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~n 385 (473)
|+++.... ..+.+ ..+..+.++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.|
T Consensus 317 w~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 317 WCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred EEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 99974311 12333 344456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHH
Q 047833 386 SKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAA 465 (473)
Q Consensus 386 A~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (473)
|+++++.||+|+++..++...++.+++.++|+++|.+ +++||+||+++++.+++|+ .+||||++++++|++.+
T Consensus 397 a~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av----~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 397 ASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAI----KERGSSVKDLDGFVKHV 469 (477)
T ss_pred HHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHH
Confidence 9998877799999964222346899999999999942 2389999999999999999 99999999999999988
Q ss_pred Hhh
Q 047833 466 SMV 468 (473)
Q Consensus 466 ~~~ 468 (473)
+..
T Consensus 470 ~~~ 472 (477)
T PLN02863 470 VEL 472 (477)
T ss_pred HHh
Confidence 754
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9.2e-64 Score=499.10 Aligned_cols=451 Identities=33% Similarity=0.616 Sum_probs=341.6
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCC------CCCceEEecCCCCCCCCCC
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQ------NSSINLLEIPFDSIDHNLP 74 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~~~~~~l~ 74 (473)
|..++.||+++|+|++||++|++.||+.|.+ |||+|||++++.+...+++.+.. ...+.+..++++...++++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 6667889999999999999999999999999 99999999999988766654320 0123555566543223666
Q ss_pred CCCCCCCCC-------ChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecc
Q 047833 75 PCTENTDSV-------PYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 75 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
++.+..... ....+..+....+.+.+.+.+++++. +|||||+|.++.|+..+|+.+|||++.++++
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~ 152 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-------RPDCLVADMFFPWATEAAEKFGVPRLVFHGT 152 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCEEEECCcchhHHHHHHHhCCCeEEeecc
Confidence 654433211 11223344455566777777777766 8999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhccCCCCCC-C-CCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccc
Q 047833 148 GGFGFACYYSLWVNLPHRNM-D-SDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEE 225 (473)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (473)
+++......+...+.|.... . .+...+|+++..+.++..++.. ......+..++........+.+++++||+.+
T Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~ 228 (482)
T PLN03007 153 GYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQIND----ADEESPMGKFMKEVRESEVKSFGVLVNSFYE 228 (482)
T ss_pred cHHHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCC----CCCchhHHHHHHHHHhhcccCCEEEEECHHH
Confidence 88877665544433321111 1 1123467776433344444432 1122234455555556677888999999999
Q ss_pred cchhHHHHHHhhcCCCeEEecccCCCccCC---CCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHH
Q 047833 226 LDKIGLMYFKRKFGRSVWPIGPVLLSTENR---GGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAM 302 (473)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~ 302 (473)
||+++.+.++......+++|||+....... .......+..+++|.+||+.++++++|||||||+.....+++.+++.
T Consensus 229 le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 229 LESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 999988888776656799999986532110 00011111235789999999988999999999998888899999999
Q ss_pred HHHhCCCceEEEECCCCC------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEe
Q 047833 303 ALEASGKNFIWVVRPPIG------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIG 375 (473)
Q Consensus 303 al~~~~~~~i~~~~~~~~------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~ 375 (473)
+|+..+++|||+++.... ..+++ ..+..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 309 ~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~ 388 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVT 388 (482)
T ss_pred HHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeee
Confidence 999999999999985311 12334 44556789999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHhhcceEEEecC-----CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhccccccc
Q 047833 376 WPLAAEQFYNSKLLEEEIGVCVEVARG-----KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENF 450 (473)
Q Consensus 376 ~P~~~DQ~~nA~~v~~~lG~g~~l~~~-----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 450 (473)
+|+++||+.||+++++.+++|+.+..+ +...++.++|+++|+++|.++ +|++||+||+++++.+++|+ .+
T Consensus 389 ~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~~~r~~a~~~~~~a~~a~----~~ 463 (482)
T PLN03007 389 WPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-EAEERRLRAKKLAEMAKAAV----EE 463 (482)
T ss_pred ccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH----hC
Confidence 999999999999998766777765311 114689999999999999987 88999999999999999999 99
Q ss_pred CCcHHHHHHHHHHHHHhh
Q 047833 451 QGSSVKAMNQFLNAASMV 468 (473)
Q Consensus 451 ~g~~~~~~~~~~~~~~~~ 468 (473)
||||++++++|++.+++.
T Consensus 464 gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 464 GGSSFNDLNKFMEELNSR 481 (482)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999988754
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.7e-63 Score=484.42 Aligned_cols=433 Identities=25% Similarity=0.421 Sum_probs=334.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCC-CCC
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPC-TEN 79 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 79 (473)
|++++.||+++|++++||++|++.||+.|+. +|+.|||++++.+...+..... .+++|..+| ++++++ .+.
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~~--~~i~~~~ip-----dglp~~~~~~ 72 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDPS--SPISIATIS-----DGYDQGGFSS 72 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCCC--CCEEEEEcC-----CCCCCccccc
Confidence 7788889999999999999999999999999 9999999999987655533222 468999887 366653 222
Q ss_pred CCCCChhhHHHHHHHH-HhhhHHHHHHHHhHhhhcCCCCc-cEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhh
Q 047833 80 TDSVPYHLVSKLIEAT-LSFKPHFKKLVNDLIDEQNGYKP-LCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYS 157 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~p-D~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 157 (473)
... ...++..+ ..+.+.+.++++.... .+ +| +|||+|.++.|+..+|+.+|||++.++++++.....+++
T Consensus 73 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 73 AGS-----VPEYLQNFKTFGSKTVADIIRKHQS--TD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred ccC-----HHHHHHHHHHhhhHHHHHHHHHhhc--cC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 111 12334333 3566777777776421 12 45 999999999999999999999999999988877655543
Q ss_pred hhccCCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhh
Q 047833 158 LWVNLPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRK 237 (473)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (473)
.... .......+|+++. ++..+++.++............+.+......+++++++||+.+||+.+++.++..
T Consensus 145 ~~~~-----~~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 216 (449)
T PLN02173 145 SYIN-----NGSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV 216 (449)
T ss_pred HHhc-----cCCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc
Confidence 2111 0112234677776 6777887766433322334444445556677888999999999999999988653
Q ss_pred cCCCeEEecccCCCcc----C-CCCCCC-CCC--CchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCC
Q 047833 238 FGRSVWPIGPVLLSTE----N-RGGAGK-EYG--ISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGK 309 (473)
Q Consensus 238 ~~~~~~~vGp~~~~~~----~-~~~~~~-~~~--~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (473)
++++.|||+.+... . ...... ..+ ...++|.+||+.++++++|||||||+...+.+++.+++.+| .+.
T Consensus 217 --~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 --CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred --CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 46999999975310 0 000000 000 22456999999998899999999999999999999999999 778
Q ss_pred ceEEEECCCC-CCCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHH
Q 047833 310 NFIWVVRPPI-GFDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSK 387 (473)
Q Consensus 310 ~~i~~~~~~~-~~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~ 387 (473)
+|||++.... +..+++ ..+..++|+++.+|+||.+||+|++|++|||||||||++|++++|||||++|+++||+.||+
T Consensus 293 ~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 372 (449)
T PLN02173 293 SYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK 372 (449)
T ss_pred CEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHH
Confidence 8999997431 223444 44444688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcceEEEecCC-CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 388 LLEEEIGVCVEVARGK-SSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 388 ~v~~~lG~g~~l~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
++++.||+|+.+..++ ...++.++|+++|+++|.++ +|+++|+||+++++..++|+ .+||||.+++++|++.+.
T Consensus 373 ~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~Av----~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 373 YIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVKSL----SEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHhc
Confidence 9998889999997521 12369999999999999987 78899999999999999999 999999999999999875
No 4
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.2e-63 Score=487.38 Aligned_cols=450 Identities=31% Similarity=0.559 Sum_probs=344.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCC---C-CCCceEEecCCCCCCCCCCCCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVP---Q-NSSINLLEIPFDSIDHNLPPCTEN 79 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~ 79 (473)
++.||+++|++++||++|++.||+.|.. +|+.|||++++.+...+..... . ...++|..+|++...++++++.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 3469999999999999999999999999 9999999999988655543211 0 023899999987555688877655
Q ss_pred CCCCCh-hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhh
Q 047833 80 TDSVPY-HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSL 158 (473)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
..+.+. ..+..+...+..+.+.+.+++++. .. +|+|||+|.++.|+..+|+.+|||.+.|++++++....+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~-pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA----KP-PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CC-CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 444332 233455566666777778877753 11 579999999999999999999999999999998887765544
Q ss_pred hccCCCC--CCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHh
Q 047833 159 WVNLPHR--NMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKR 236 (473)
Q Consensus 159 ~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (473)
..+.+.. ........+|+++....++..+++..+.... ....+..........++++++||+.+||+.+++.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 161 RLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLP---DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred HHhcccccCCCCCceeecCCCCccccccHHHCChhhcCcc---cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 3332211 1122335577777544566777766443211 1222222222223346689999999999999999987
Q ss_pred hcCCCeEEecccCCCccC--CCC-CCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEE
Q 047833 237 KFGRSVWPIGPVLLSTEN--RGG-AGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIW 313 (473)
Q Consensus 237 ~~~~~~~~vGp~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (473)
.++++++.|||+...... +.. +........++|.+||+.++++++|||||||.....++++.+++.+|+.++.+|||
T Consensus 238 ~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW 317 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIW 317 (491)
T ss_pred hcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 777789999999753210 000 00001113457999999998899999999999999999999999999999999999
Q ss_pred EECCCCC-------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhh
Q 047833 314 VVRPPIG-------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYN 385 (473)
Q Consensus 314 ~~~~~~~-------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~n 385 (473)
++..... ..|++ .....+.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 318 ~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~n 397 (491)
T PLN02534 318 VIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLN 397 (491)
T ss_pred EEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHH
Confidence 9984210 12344 334457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEec------C-CC--C-ccCHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHHHhcccccccCCc
Q 047833 386 SKLLEEEIGVCVEVAR------G-KS--S-EVLKKDIAAKIELVMN--ETEKGIELRKNAYEVREIIKNAFKNEENFQGS 453 (473)
Q Consensus 386 A~~v~~~lG~g~~l~~------~-~~--~-~~~~~~l~~~i~~ll~--~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~ 453 (473)
|+++++.||+|+++.. + +. . -++.++|+++|+++|. ++ +|+++|+||++|++.+++|+ .+|||
T Consensus 398 a~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~e-eg~~~R~rA~elk~~a~~Av----~~GGS 472 (491)
T PLN02534 398 EKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGE-EGERRRRRAQELGVMARKAM----ELGGS 472 (491)
T ss_pred HHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccc-cHHHHHHHHHHHHHHHHHHh----cCCCc
Confidence 9999999999998842 0 00 1 3799999999999997 33 78899999999999999999 99999
Q ss_pred HHHHHHHHHHHHHh
Q 047833 454 SVKAMNQFLNAASM 467 (473)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (473)
|.+++++|++.++.
T Consensus 473 S~~nl~~fv~~i~~ 486 (491)
T PLN02534 473 SHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-62 Score=483.40 Aligned_cols=450 Identities=27% Similarity=0.429 Sum_probs=337.1
Q ss_pred CCC-CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCC-CCceEEecCCCCCCCCCCCCCC
Q 047833 1 MAQ-RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQN-SSINLLEIPFDSIDHNLPPCTE 78 (473)
Q Consensus 1 ~~~-~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 78 (473)
|+. .+.||+++|++++||++|++.||+.|.. +|+.|||++++.+...+.+..... .++++..+|++ ..++++++.+
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p-~~dglp~~~~ 78 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLP-SVPGLPSSAE 78 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCC-ccCCCCCCcc
Confidence 543 4679999999999999999999999999 999999999998876665321110 46899999987 4467776655
Q ss_pred CCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhh
Q 047833 79 NTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSL 158 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
...+.+......+......+.+.+.+++++. +++|||+|.++.|+..+|+++|||++.++++++.....+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 151 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPP 151 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhh
Confidence 4333322112334455566777788888776 789999999999999999999999999999998887776544
Q ss_pred hccCCC--CCCCCCc-ccCCCC-CC--CCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHH
Q 047833 159 WVNLPH--RNMDSDE-CVLPDF-PE--ASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLM 232 (473)
Q Consensus 159 ~~~~p~--~~~~~~~-~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (473)
...... .....+. ..+|++ |. .+.++..++..++............+.+......+++++++||+.+||+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 152 SSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred HhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 211110 0011111 123332 21 12245566666554322222223333344445667889999999999999999
Q ss_pred HHHhhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceE
Q 047833 233 YFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFI 312 (473)
Q Consensus 233 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 312 (473)
.++..++++++.|||+..................++|.+||++++++++|||||||+...+.+++.+++.+|+.++.+||
T Consensus 232 ~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~Fl 311 (472)
T PLN02670 232 LLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFF 311 (472)
T ss_pred HHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 99876667899999997531010000000001125799999999889999999999999999999999999999999999
Q ss_pred EEECCCCC-------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchh
Q 047833 313 WVVRPPIG-------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFY 384 (473)
Q Consensus 313 ~~~~~~~~-------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~ 384 (473)
|++....+ ..+++ ..+....++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.
T Consensus 312 Wv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (472)
T PLN02670 312 WVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGL 391 (472)
T ss_pred EEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHH
Confidence 99974211 12333 33444556888899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcceEEEecCC-CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Q 047833 385 NSKLLEEEIGVCVEVARGK-SSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLN 463 (473)
Q Consensus 385 nA~~v~~~lG~g~~l~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (473)
||+++++. |+|+.+...+ ...++.++|+++|+++|.++ +|++||+||+++++.++ +.+...+++++|++
T Consensus 392 Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~-~g~~~r~~a~~l~~~~~--------~~~~~~~~~~~~~~ 461 (472)
T PLN02670 392 NTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDD-AGEEIRDKAKEMRNLFG--------DMDRNNRYVDELVH 461 (472)
T ss_pred HHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHh--------CcchhHHHHHHHHH
Confidence 99999865 9999997511 13489999999999999887 78899999999999996 34458999999999
Q ss_pred HHHhhh
Q 047833 464 AASMVK 469 (473)
Q Consensus 464 ~~~~~~ 469 (473)
.|..++
T Consensus 462 ~l~~~~ 467 (472)
T PLN02670 462 YLRENR 467 (472)
T ss_pred HHHHhc
Confidence 998875
No 6
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=5.3e-63 Score=484.56 Aligned_cols=427 Identities=25% Similarity=0.385 Sum_probs=329.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSV 83 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (473)
.++||+++|++++||++|++.||+.|++ +||+|||++++.+...+.+.+.....+++..++++ ..++++.+.+...+.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p-~~dgLp~g~~~~~~l 80 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIP-PVNGLPAGAETTSDI 80 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCC-CccCCCCCcccccch
Confidence 3589999999999999999999999999 99999999999887777654321135677777754 224677665433222
Q ss_pred ChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccCC
Q 047833 84 PYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLP 163 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 163 (473)
.......+....+.+.+.+++++++. ++||||+| ++.|+..+|+.+|||++.++++++.... +.+. +
T Consensus 81 ~~~l~~~~~~~~~~~~~~l~~~L~~~-------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~----~ 147 (442)
T PLN02208 81 PISMDNLLSEALDLTRDQVEAAVRAL-------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHV----P 147 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC-------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHcc----C
Confidence 22222445556677888888888877 89999999 5789999999999999999999887653 3322 1
Q ss_pred CCCCCCCcccCCCCCCC-CcCCccccchhhhhcCCCCh-HHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCC
Q 047833 164 HRNMDSDECVLPDFPEA-STIHATQLADYLRVADGSDS-FSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRS 241 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 241 (473)
.... ...+|++|.. +.++..++..+ ..... +..+..+.......++++++||+.+||+.+++.+...++++
T Consensus 148 ~~~~---~~~~pglp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~ 220 (442)
T PLN02208 148 GGKL---GVPPPGYPSSKVLFRENDAHAL----ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKK 220 (442)
T ss_pred cccc---CCCCCCCCCcccccCHHHcCcc----cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCC
Confidence 1000 1124666542 23445555532 11112 22223333345567889999999999999999998887789
Q ss_pred eEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCC-
Q 047833 242 VWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIG- 320 (473)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~- 320 (473)
++.|||+...... ....+++|.+||+.++++++|||||||....+.+++.+++.+++..+.+++|++..+.+
T Consensus 221 v~~vGpl~~~~~~-------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 221 VLLTGPMFPEPDT-------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred EEEEeecccCcCC-------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 9999999865410 12356889999999988899999999999889999999999988889999999875311
Q ss_pred -----CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhc
Q 047833 321 -----FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIG 394 (473)
Q Consensus 321 -----~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG 394 (473)
..+++ ..+....|+++.+|+||.+||+|++|++|||||||||++|++++|||||++|+++||+.||+++++.+|
T Consensus 294 ~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g 373 (442)
T PLN02208 294 STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFE 373 (442)
T ss_pred cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhc
Confidence 12334 444455899999999999999999999999999999999999999999999999999999999887679
Q ss_pred ceEEEecCCCCccCHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Q 047833 395 VCVEVARGKSSEVLKKDIAAKIELVMNETE-KGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASM 467 (473)
Q Consensus 395 ~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (473)
+|+.+...+...+++++|+++|+++|++++ +|+++|+||+++++.+. . +|||.+++++|++.++.
T Consensus 374 ~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~-------~-~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 374 VSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV-------S-PGLLTGYVDKFVEELQE 439 (442)
T ss_pred eeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh-------c-CCcHHHHHHHHHHHHHH
Confidence 999997611123899999999999998763 68899999999999984 3 77899999999998864
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.2e-62 Score=483.49 Aligned_cols=437 Identities=27% Similarity=0.456 Sum_probs=336.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCC
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTEN 79 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (473)
|-..+.||+++|++++||++|++.||+.|. + +|+.|||++++.+...+.+......++++..+|++ ..+++++..
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p-~~~glp~~~-- 76 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSP-DISGLVDPS-- 76 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhccccCCCceEEECCCc-cccCCCCCC--
Confidence 555678999999999999999999999998 8 99999999999876554332211136889999865 234554211
Q ss_pred CCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhh
Q 047833 80 TDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLW 159 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (473)
. .....+......+.+.+++++++.. . +|+|||+|.++.|+..+|+++|||++.++++++...+.+.+.+
T Consensus 77 -~----~~~~~~~~~~~~~~~~~~~~l~~~~----~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 146 (481)
T PLN02992 77 -A----HVVTKIGVIMREAVPTLRSKIAEMH----Q-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYP 146 (481)
T ss_pred -c----cHHHHHHHHHHHhHHHHHHHHHhcC----C-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhh
Confidence 0 1112334444566677777777641 1 6899999999999999999999999999999988776655432
Q ss_pred ccC-CCCC---CCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHH
Q 047833 160 VNL-PHRN---MDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFK 235 (473)
Q Consensus 160 ~~~-p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (473)
... +... ...+...+|+++. ++..++...+... .......+.+......+++++++||+.+||+.+++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~ 221 (481)
T PLN02992 147 TLDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQ 221 (481)
T ss_pred hhccccccccccCCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHh
Confidence 211 1010 0012345677765 6666777544322 22334455555566778889999999999999999886
Q ss_pred hh--c----CCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCC
Q 047833 236 RK--F----GRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGK 309 (473)
Q Consensus 236 ~~--~----~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (473)
.. + .+.++.|||+...... ...+++|.+||+.++++++|||||||...++.+++.+++.+|+.++.
T Consensus 222 ~~~~~~~~~~~~v~~VGPl~~~~~~--------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 293 (481)
T PLN02992 222 DPKLLGRVARVPVYPIGPLCRPIQS--------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQ 293 (481)
T ss_pred hccccccccCCceEEecCccCCcCC--------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 42 1 2579999999754210 12345799999999889999999999999999999999999999999
Q ss_pred ceEEEECCCC---------------------CCCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHH
Q 047833 310 NFIWVVRPPI---------------------GFDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEAL 367 (473)
Q Consensus 310 ~~i~~~~~~~---------------------~~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal 367 (473)
+|||++.... +..|++ .++...+++++.+|+||.+||+|+++++|||||||||++|++
T Consensus 294 ~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal 373 (481)
T PLN02992 294 RFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESV 373 (481)
T ss_pred CEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHH
Confidence 9999996321 012233 344556679999999999999999999999999999999999
Q ss_pred hhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccc
Q 047833 368 SHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNE 447 (473)
Q Consensus 368 ~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~ 447 (473)
++|||||++|+++||+.||+++++.+|+|+.++.. ...++.++|+++|+++|.++ +|+++++||+++++.+++|+
T Consensus 374 ~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a~~Av--- 448 (481)
T PLN02992 374 VGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTAEMSL--- 448 (481)
T ss_pred HcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999996456999999751 13589999999999999987 88899999999999999997
Q ss_pred cc--cCCcHHHHHHHHHHHHHhhhh
Q 047833 448 EN--FQGSSVKAMNQFLNAASMVKE 470 (473)
Q Consensus 448 ~~--~~g~~~~~~~~~~~~~~~~~~ 470 (473)
. +||||.+++++|++.+++--+
T Consensus 449 -~~~~GGSS~~~l~~~v~~~~~~~~ 472 (481)
T PLN02992 449 -SIDGGGVAHESLCRVTKECQRFLE 472 (481)
T ss_pred -cCCCCCchHHHHHHHHHHHHHHHH
Confidence 6 399999999999998876544
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.7e-62 Score=484.16 Aligned_cols=433 Identities=25% Similarity=0.462 Sum_probs=326.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCC
Q 047833 3 QRKETIVLFPFMAQGHIIPFLALALH--LEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~La~~--L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
+.+.||+++|++++||++|++.||+. |.+ +|+.|||++++.+.+.++..+.+...+++..++ ++++++..
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~glp~~~~-- 77 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-----DGLPKDDP-- 77 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccccCCCCceEEEECC-----CCCCCCcc--
Confidence 45679999999999999999999999 558 999999999999877664432211345555554 35665432
Q ss_pred CCCChhhHHHHHHHH-HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhh
Q 047833 81 DSVPYHLVSKLIEAT-LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLW 159 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (473)
. ....+...+ +.+.+.+.+++++. +|||||+|.++.|+..+|+.+|||.+.+++.++..+..+.+..
T Consensus 78 -~----~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 78 -R----APETLLKSLNKVGAKNLSKIIEEK-------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred -c----CHHHHHHHHHHhhhHHHHHHHhcC-------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 1 111233333 35566677777776 8999999999999999999999999999998888877666542
Q ss_pred c-cCCCCCC-C-CCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHh
Q 047833 160 V-NLPHRNM-D-SDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKR 236 (473)
Q Consensus 160 ~-~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (473)
. ..+.... . .+...+|+++. +...++...+..... ..+...+.+.......++++++||+.+||+.+++.++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 221 (456)
T PLN02210 146 MKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD 221 (456)
T ss_pred hccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh
Confidence 2 1111111 1 12245677765 666677665443211 11222333444455667899999999999999998876
Q ss_pred hcCCCeEEecccCCCcc--CCCC---CCC--CCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCC
Q 047833 237 KFGRSVWPIGPVLLSTE--NRGG---AGK--EYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGK 309 (473)
Q Consensus 237 ~~~~~~~~vGp~~~~~~--~~~~---~~~--~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (473)
. +++++|||+..... .... ... ..+..+++|.+||+.++++++|||||||....+.+++.+++.+|+..+.
T Consensus 222 -~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 222 -L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred -c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 3 68999999975210 0000 000 0123456799999999888999999999998899999999999999999
Q ss_pred ceEEEECCCC-CCCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHH
Q 047833 310 NFIWVVRPPI-GFDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSK 387 (473)
Q Consensus 310 ~~i~~~~~~~-~~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~ 387 (473)
+|||+++... ...+.. .....+++..+.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+
T Consensus 300 ~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~ 379 (456)
T PLN02210 300 PFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDAR 379 (456)
T ss_pred CEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHH
Confidence 9999997431 112222 22221344567799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcceEEEecC-CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 388 LLEEEIGVCVEVARG-KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 388 ~v~~~lG~g~~l~~~-~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
++++.||+|+.+... ....++.++|+++|+++|.++ +|+++|+||++|++..++|+ .+||||.+++++|++.++
T Consensus 380 ~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~-~g~~~r~~a~~l~~~a~~Av----~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 380 LLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP-AAADIRRRAAELKHVARLAL----APGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHh
Confidence 999756999999741 123689999999999999887 78899999999999999999 999999999999999875
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-62 Score=481.63 Aligned_cols=428 Identities=25% Similarity=0.450 Sum_probs=327.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCC-CCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCT-ENTDS 82 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 82 (473)
++.||+++|++++||++|++.||+.|.. +|+.|||++++.+..... ... .+++|..+|. +++++. ..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~~~-~~~--~~i~~~~ip~-----glp~~~~~~--- 73 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFSPS-DDF--TDFQFVTIPE-----SLPESDFKN--- 73 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHc-CCCEEEEEeCcccccccc-cCC--CCeEEEeCCC-----CCCcccccc---
Confidence 3569999999999999999999999999 999999999997642111 111 3578888772 565531 21
Q ss_pred CChhhHHHHHHHH-HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 047833 83 VPYHLVSKLIEAT-LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVN 161 (473)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (473)
.. . ..+...+ ..+.+.+.++++++..+... +++|||+|.++.|+..+|+++|||++.++++++.....+.++...
T Consensus 74 ~~--~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~-p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 74 LG--P-IEFLHKLNKECQVSFKDCLGQLVLQQGN-EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred cC--H-HHHHHHHHHHhHHHHHHHHHHHHhccCC-CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 11 1 1222322 35556667777665321122 569999999999999999999999999999999888766654322
Q ss_pred C------CCCCC-CCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHH
Q 047833 162 L------PHRNM-DSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYF 234 (473)
Q Consensus 162 ~------p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (473)
. |.... ..+...+|+++. ++..++...... ........+.... ...+++++++||+.+||+.+++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~--~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l 223 (451)
T PLN02410 150 YANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWA--SLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRL 223 (451)
T ss_pred HhccCCCCccccccCccccCCCCCC---CChHHCcchhcC--CcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHH
Confidence 1 21111 112235677665 555666543221 1222333333322 346788999999999999999999
Q ss_pred HhhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEE
Q 047833 235 KRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWV 314 (473)
Q Consensus 235 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (473)
...+++++++|||++...... ........+|.+||++++++++|||||||....+.+++.+++.+|+..+.+|||+
T Consensus 224 ~~~~~~~v~~vGpl~~~~~~~----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv 299 (451)
T PLN02410 224 QQQLQIPVYPIGPLHLVASAP----TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWV 299 (451)
T ss_pred HhccCCCEEEecccccccCCC----ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEE
Confidence 877767899999997543110 0011233568999999988999999999999999999999999999999999999
Q ss_pred ECCCC----C---CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhH
Q 047833 315 VRPPI----G---FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNS 386 (473)
Q Consensus 315 ~~~~~----~---~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA 386 (473)
++.+. + ..+.+ .++ .++|..+.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||
T Consensus 300 ~r~~~~~~~~~~~~lp~~f~er-~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 378 (451)
T PLN02410 300 IRPGSVRGSEWIESLPKEFSKI-ISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNA 378 (451)
T ss_pred EccCcccccchhhcCChhHHHh-ccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHH
Confidence 97431 0 02333 223 346678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 387 KLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 387 ~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+++++.||+|+.+.. .++.++|+++|+++|.++ ++++||+||+++++++++|+ .+||||.+++++|++.++
T Consensus 379 ~~~~~~~~~G~~~~~----~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~a~----~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 379 RYLECVWKIGIQVEG----DLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRASV----ISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred HHHHHHhCeeEEeCC----cccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHH
Confidence 999988899999964 789999999999999987 68899999999999999999 999999999999999886
Q ss_pred h
Q 047833 467 M 467 (473)
Q Consensus 467 ~ 467 (473)
.
T Consensus 450 ~ 450 (451)
T PLN02410 450 T 450 (451)
T ss_pred h
Confidence 4
No 10
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-62 Score=477.37 Aligned_cols=435 Identities=26% Similarity=0.392 Sum_probs=336.4
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCC--ceEEecCCCCCCCCCCCCCC
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSS--INLLEIPFDSIDHNLPPCTE 78 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 78 (473)
|-+.+.||+++|++++||++|++.||+.|+. +|+.|||++++.+...+.+....... +.+..+|. .++++.+.+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~---~~glp~g~e 76 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPH---VDGLPVGTE 76 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhcccccCCCCceEEEEECCC---cCCCCCccc
Confidence 5667889999999999999999999999999 99999999999986655542111023 44555553 257777655
Q ss_pred CCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhh
Q 047833 79 NTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSL 158 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
...+.+......+......+.+.+.+++++. +|||||+|. ..|+..+|+.+|||++.++++++..+..+..+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 148 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRDQVEVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVP 148 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcc
Confidence 4444443334456666667778888888887 789999995 78999999999999999999999887776531
Q ss_pred hccCCCCCCCCCcccCCCCCCC-CcCCccccchhhh--hcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHH
Q 047833 159 WVNLPHRNMDSDECVLPDFPEA-STIHATQLADYLR--VADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFK 235 (473)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (473)
.... . ...|++|.. +.++..++..+.. .....+.....+.+.......++++++||+.+||+.+++.+.
T Consensus 149 ~~~~------~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 149 GGEL------G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred cccC------C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 1010 0 123566531 1244455544322 111112233445555455677889999999999999999997
Q ss_pred hhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEE
Q 047833 236 RKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVV 315 (473)
Q Consensus 236 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 315 (473)
...+++++.|||+..... . ....+++|.+|||.++++++|||||||......+++.++..+|+..+.+|+|++
T Consensus 221 ~~~~~~v~~VGPL~~~~~--~-----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 221 KHCRKKVLLTGPVFPEPD--K-----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred hhcCCcEEEeccCccCcc--c-----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 755578999999975431 0 012356899999999999999999999999999999999999999999999999
Q ss_pred CCCC------CCCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHH
Q 047833 316 RPPI------GFDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKL 388 (473)
Q Consensus 316 ~~~~------~~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~ 388 (473)
.... +..|++ ..+....++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++
T Consensus 294 r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~ 373 (453)
T PLN02764 294 KPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRL 373 (453)
T ss_pred eCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHH
Confidence 8431 123445 555667788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Q 047833 389 LEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET-EKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASM 467 (473)
Q Consensus 389 v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (473)
+++.+|+|+.+...+...++.++|+++|+++|+++ ++|+++|+||+++++.+ .++|||.+++++|++.+..
T Consensus 374 l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~--------~~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 374 LSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL--------ASPGLLTGYVDNFIESLQD 445 (453)
T ss_pred HHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHH
Confidence 97667999998641112589999999999999875 37889999999999999 4689999999999999876
Q ss_pred hhh
Q 047833 468 VKE 470 (473)
Q Consensus 468 ~~~ 470 (473)
..+
T Consensus 446 ~~~ 448 (453)
T PLN02764 446 LVS 448 (453)
T ss_pred hcc
Confidence 543
No 11
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.9e-62 Score=483.43 Aligned_cols=445 Identities=25% Similarity=0.434 Sum_probs=337.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccC-------CCC--CCceEEecCCCCCCCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSV-------PQN--SSINLLEIPFDSIDHNLP 74 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~-------~~~--~~~~~~~~~~~~~~~~l~ 74 (473)
.+.||+++|+|++||++|++.||+.|.. +|..|||++++.+...+.+.. ... ..++|..+| ++++
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-----dglp 79 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-----DGWA 79 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----CCCC
Confidence 3679999999999999999999999999 999999999998766554210 000 124444443 3565
Q ss_pred CCCCCCCCCChhhHHHHHHHH-HhhhHHHHHHHHhHhhhcCCCCc-cEEEECCCcchHHHHHHHhCCceEEEecchHHHH
Q 047833 75 PCTENTDSVPYHLVSKLIEAT-LSFKPHFKKLVNDLIDEQNGYKP-LCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGF 152 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~p-D~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~ 152 (473)
.+.+... .+..++..+ ..+.+.+.++++.... .+ +| +|||+|.++.|+..+|+++|||.+.++++++...
T Consensus 80 ~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~--~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~ 151 (480)
T PLN02555 80 EDDPRRQ-----DLDLYLPQLELVGKREIPNLVKRYAE--QG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACF 151 (480)
T ss_pred CCccccc-----CHHHHHHHHHHhhhHHHHHHHHHHhc--cC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHH
Confidence 5433211 112333333 3556677777765421 12 44 9999999999999999999999999999999988
Q ss_pred HHHhhhhccC-CCCC-C-CCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchh
Q 047833 153 ACYYSLWVNL-PHRN-M-DSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKI 229 (473)
Q Consensus 153 ~~~~~~~~~~-p~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (473)
..+++..... +... . ......+|++|. ++..+++.++..........+.+.+......+++++++||+.+||+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 228 (480)
T PLN02555 152 SAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKE 228 (480)
T ss_pred HHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 8777654321 2111 1 112345788876 77788877654322233444545555556777889999999999999
Q ss_pred HHHHHHhhcCCCeEEecccCCCccCC-CCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCC
Q 047833 230 GLMYFKRKFGRSVWPIGPVLLSTENR-GGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASG 308 (473)
Q Consensus 230 ~~~~~~~~~~~~~~~vGp~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~ 308 (473)
+++.++..+ + ++.|||+....... .......+..+++|.+||+.++++++|||||||+...+.+++.+++.+|+..+
T Consensus 229 ~~~~l~~~~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~ 306 (480)
T PLN02555 229 IIDYMSKLC-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSG 306 (480)
T ss_pred HHHHHhhCC-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 999887654 4 99999997542110 00001012345689999999988899999999999999999999999999999
Q ss_pred CceEEEECCCC-------CCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEecccccc
Q 047833 309 KNFIWVVRPPI-------GFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAE 381 (473)
Q Consensus 309 ~~~i~~~~~~~-------~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~D 381 (473)
.+|||+++... +..+++.....++|+.+.+|+||.+||.|+++++|||||||||++||+++|||||++|+++|
T Consensus 307 ~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~D 386 (480)
T PLN02555 307 VSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGD 386 (480)
T ss_pred CeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccc
Confidence 99999986321 01222311223567888899999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcceEEEecC--CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHH
Q 047833 382 QFYNSKLLEEEIGVCVEVARG--KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMN 459 (473)
Q Consensus 382 Q~~nA~~v~~~lG~g~~l~~~--~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~ 459 (473)
|+.||+++++.||+|+++..+ ....++.++|.++|+++|.++ +|+++|+||++|++..++|+ .+||||+++++
T Consensus 387 Q~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-~g~~~r~ra~~l~~~a~~A~----~egGSS~~~l~ 461 (480)
T PLN02555 387 QVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE-KAAELKQNALKWKEEAEAAV----AEGGSSDRNFQ 461 (480)
T ss_pred cHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHH
Confidence 999999999999999999421 014689999999999999887 88999999999999999999 99999999999
Q ss_pred HHHHHHHhhhhhc
Q 047833 460 QFLNAASMVKETI 472 (473)
Q Consensus 460 ~~~~~~~~~~~~~ 472 (473)
+|++.+.+....|
T Consensus 462 ~~v~~i~~~~~~~ 474 (480)
T PLN02555 462 EFVDKLVRKSVEI 474 (480)
T ss_pred HHHHHHHhcccee
Confidence 9999998775543
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.5e-61 Score=474.43 Aligned_cols=429 Identities=22% Similarity=0.380 Sum_probs=325.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSV 83 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (473)
.+.||+++|++++||++|++.||+.|.. +|++|||++++.+...+.+......+++|..+|. +++.+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~-----g~~~~~------ 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDPKLGITFMSISD-----GQDDDP------ 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCC-----CCCCCc------
Confidence 3469999999999999999999999999 9999999999998766655321113688888873 332211
Q ss_pred ChhhHHHHHHHHH-hhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccC
Q 047833 84 PYHLVSKLIEATL-SFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNL 162 (473)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
+. .+..+...+. .+.+.+.++++++... + +++|||+|.+..|+..+|+++|||++.++++++.....+.+.....
T Consensus 73 ~~-~~~~l~~a~~~~~~~~l~~ll~~l~~~--~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 73 PR-DFFSIENSMENTMPPQLERLLHKLDED--G-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred cc-cHHHHHHHHHHhchHHHHHHHHHhcCC--C-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 11 1223444544 5677778888776211 1 3489999999999999999999999999999888777665443211
Q ss_pred CC-----CCCC--CCc-ccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHH
Q 047833 163 PH-----RNMD--SDE-CVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYF 234 (473)
Q Consensus 163 p~-----~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (473)
.. .... .+. ..+|+++. ++..++..++............+.+......+++++++||+.+||+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 225 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNH 225 (448)
T ss_pred hccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHH
Confidence 11 0000 011 24677765 6777777655433222334555566666677788999999999999888866
Q ss_pred Hh----hcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcc-cCCHHHHHHHHHHHHhCCC
Q 047833 235 KR----KFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQN-TIATSQMMQLAMALEASGK 309 (473)
Q Consensus 235 ~~----~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~~~~al~~~~~ 309 (473)
.. ...++++.|||++....... ........+.+|.+||++++++++|||||||+. ..+.+++.+++.+|++.+.
T Consensus 226 ~~~~~~~~~~~v~~iGpl~~~~~~~~-~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~ 304 (448)
T PLN02562 226 QASYNNGQNPQILQIGPLHNQEATTI-TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGR 304 (448)
T ss_pred HhhhccccCCCEEEecCccccccccc-CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCC
Confidence 53 23478999999986541100 000001234568899999988899999999986 5789999999999999999
Q ss_pred ceEEEECCCC-CCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHH
Q 047833 310 NFIWVVRPPI-GFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKL 388 (473)
Q Consensus 310 ~~i~~~~~~~-~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~ 388 (473)
+|||++.... +..+++.....++|+.+.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++
T Consensus 305 ~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~ 384 (448)
T PLN02562 305 PFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAY 384 (448)
T ss_pred CEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHH
Confidence 9999996431 112333111236788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 389 LEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 389 v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+++.+|+|+.+. +++.++|.++|+++|.|+ +||+||++++++++++ .+||||.+++++|++.++
T Consensus 385 ~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-----~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 385 IVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-----EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHhCceeEeC-----CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHhC
Confidence 987679998884 478999999999999988 8999999999998865 567999999999999764
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.4e-61 Score=472.29 Aligned_cols=432 Identities=24% Similarity=0.353 Sum_probs=329.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 047833 3 QRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDS 82 (473)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (473)
..+.||+++|++++||++|++.||+.|.+ +|++|||++++.+...++..+.....++|..++++ ..++++++.+...+
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP-~~dGLP~g~e~~~~ 79 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLP-PVDGLPFGAETASD 79 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhcccccCCCceEEEEecCC-CcCCCCCccccccc
Confidence 34679999999999999999999999999 99999999999887666543321135788777655 34577776544333
Q ss_pred CChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccC
Q 047833 83 VPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNL 162 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
........+......+.+.+.++++.. +|||||+|. +.|+..+|+.+|||++.++++++.....+.++....
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~~-------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~ 151 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRAL-------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAEL 151 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcC-------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhc
Confidence 332223455666667777777777765 789999995 789999999999999999999998877766532110
Q ss_pred CCCCCCCCcccCCCCCCCC-cCCcccc--chhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcC
Q 047833 163 PHRNMDSDECVLPDFPEAS-TIHATQL--ADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFG 239 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (473)
...+|+++... .++..+. ..++.. ....+.+......+++++++||+.+||+.+++.++..++
T Consensus 152 --------~~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 217 (446)
T PLN00414 152 --------GFPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQ 217 (446)
T ss_pred --------CCCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcC
Confidence 01234444311 1111111 111110 112333444556678899999999999999999987666
Q ss_pred CCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCC
Q 047833 240 RSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPI 319 (473)
Q Consensus 240 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 319 (473)
++++.|||+........ .....++|.+|||.+++++||||||||......+++.++..+|+..+.+|+|++....
T Consensus 218 ~~v~~VGPl~~~~~~~~-----~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~ 292 (446)
T PLN00414 218 RKVLLTGPMLPEPQNKS-----GKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK 292 (446)
T ss_pred CCeEEEcccCCCccccc-----CcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 68999999975331100 0122457999999999999999999999999999999999999999999999997531
Q ss_pred ------CCCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHh
Q 047833 320 ------GFDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE 392 (473)
Q Consensus 320 ------~~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~ 392 (473)
+..|++ ..+....++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++.
T Consensus 293 ~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~ 372 (446)
T PLN00414 293 GSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE 372 (446)
T ss_pred CcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHH
Confidence 123555 5556667888889999999999999999999999999999999999999999999999999999766
Q ss_pred hcceEEEecCCCCccCHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhhhh
Q 047833 393 IGVCVEVARGKSSEVLKKDIAAKIELVMNETE-KGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMVKET 471 (473)
Q Consensus 393 lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 471 (473)
+|+|+.+...+...++.++|+++|+++|.+++ +|+++|+||+++++.+. .+||++ ..+++|++.+++...+
T Consensus 373 ~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~-------~~gg~s-s~l~~~v~~~~~~~~~ 444 (446)
T PLN00414 373 LEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV-------SPGLLS-GYADKFVEALENEVNN 444 (446)
T ss_pred hCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-------cCCCcH-HHHHHHHHHHHHhccc
Confidence 79999996411124899999999999998752 68899999999999986 667734 3489999999776654
No 14
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.5e-61 Score=475.86 Aligned_cols=436 Identities=28% Similarity=0.412 Sum_probs=330.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCC
Q 047833 3 QRKETIVLFPFMAQGHIIPFLALALHLEKTN--KYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
..+.||+++|+|++||++|++.||+.|.+ + ||+|||++++.+...+++.... .+++|..+|. +++......
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~~-~gi~fv~lp~-----~~p~~~~~~ 80 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPKP-DNIRFATIPN-----VIPSELVRA 80 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCCC-CCEEEEECCC-----CCCCccccc
Confidence 35789999999999999999999999999 9 9999999999988777763221 4789988883 233322111
Q ss_pred CCCChhhHHHHHHH-HHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhh
Q 047833 81 DSVPYHLVSKLIEA-TLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLW 159 (473)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (473)
.+ ...+... .+.+.+.+.+++++.. . ++||||+|.++.|+..+|+++|||++.++++++..+..+.+..
T Consensus 81 ~~-----~~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 81 AD-----FPGFLEAVMTKMEAPFEQLLDRLE----P-PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred cC-----HHHHHHHHHHHhHHHHHHHHHhcC----C-CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 11 1122222 2345566666666542 1 5799999999999999999999999999999987777665543
Q ss_pred ccC-----CCCCCC-CCc--ccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHH
Q 047833 160 VNL-----PHRNMD-SDE--CVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGL 231 (473)
Q Consensus 160 ~~~-----p~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (473)
... |..... .+. ..+|+++. ++..++..++... .....+.+........+++.+++||+++||+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 225 (459)
T PLN02448 151 LLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAI 225 (459)
T ss_pred hhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHH
Confidence 211 111100 111 13566654 6666666654322 1233444455555566778999999999999999
Q ss_pred HHHHhhcCCCeEEecccCCCccCCCCCCCC-CCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCc
Q 047833 232 MYFKRKFGRSVWPIGPVLLSTENRGGAGKE-YGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKN 310 (473)
Q Consensus 232 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~ 310 (473)
+.+...++++++.|||+............. ....+.++.+||+.++++++|||||||+.....+++.+++.+|+..+.+
T Consensus 226 ~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 226 DALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 999887767899999997642110000000 0112347999999988899999999999888899999999999999999
Q ss_pred eEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHH
Q 047833 311 FIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLE 390 (473)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~ 390 (473)
|||++... ..+.....++|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++++
T Consensus 306 ~lw~~~~~----~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~ 381 (459)
T PLN02448 306 FLWVARGE----ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381 (459)
T ss_pred EEEEEcCc----hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 99987532 11111112357888899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEecC--CCCccCHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Q 047833 391 EEIGVCVEVARG--KSSEVLKKDIAAKIELVMNET-EKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASM 467 (473)
Q Consensus 391 ~~lG~g~~l~~~--~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (473)
+.||+|+.+... +...+++++|+++|+++|.++ ++|++||+||++|++.+++++ .+||||.+++++|++.+++
T Consensus 382 ~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~----~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 382 EDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAI----AKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHhc
Confidence 878999998631 113579999999999999874 478899999999999999999 9999999999999999875
Q ss_pred h
Q 047833 468 V 468 (473)
Q Consensus 468 ~ 468 (473)
-
T Consensus 458 ~ 458 (459)
T PLN02448 458 G 458 (459)
T ss_pred c
Confidence 3
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.5e-60 Score=465.66 Aligned_cols=431 Identities=31% Similarity=0.463 Sum_probs=328.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhh--ccCC---CCCCceEEecCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTN-KYTITFVNTPLNLRKLK--SSVP---QNSSINLLEIPFDSIDHNLPPCTE 78 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~r-Gh~Vt~~~~~~~~~~v~--~~~~---~~~~~~~~~~~~~~~~~~l~~~~~ 78 (473)
+.||+++|++++||++|++.||+.|+. + |..|||++++.....+. .... ...++++..+|++ ..+++++
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~-~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-~~~~l~~--- 77 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSS-VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSV-DVDNLVE--- 77 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHh-CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCC-ccccCCC---
Confidence 459999999999999999999999997 7 99999998776553321 1010 0025889999865 2223311
Q ss_pred CCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCc-eEEEecchHHHHHHHhh
Q 047833 79 NTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIF-HAIFIGGGGFGFACYYS 157 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~ 157 (473)
.. . .....+......+.+.+.+++++.. . +++|||+|.++.|+..+|+++||| .+.+++++++....+++
T Consensus 78 -~~--~-~~~~~~~~~~~~~~~~~~~~l~~l~----~-~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~ 148 (470)
T PLN03015 78 -PD--A-TIFTKMVVKMRAMKPAVRDAVKSMK----R-KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVY 148 (470)
T ss_pred -CC--c-cHHHHHHHHHHhchHHHHHHHHhcC----C-CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHh
Confidence 00 1 2223556666677788888887652 1 579999999999999999999999 57777777776655554
Q ss_pred hhccC---CCC-CCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHH
Q 047833 158 LWVNL---PHR-NMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMY 233 (473)
Q Consensus 158 ~~~~~---p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (473)
.+... +.. ....+...+|+++. ++..+++..+.... ......+........+++++++||+++||+.+++.
T Consensus 149 l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~ 223 (470)
T PLN03015 149 LPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAA 223 (470)
T ss_pred hhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 32211 110 01112345788876 78888886554321 22233333444557789999999999999999999
Q ss_pred HHhhc------CCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhC
Q 047833 234 FKRKF------GRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEAS 307 (473)
Q Consensus 234 ~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 307 (473)
++..+ .+.++.|||+.... . ....+++|.+||+.++++++|||||||....+.+++.+++.+|+.+
T Consensus 224 l~~~~~~~~~~~~~v~~VGPl~~~~-~-------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 224 LREDMELNRVMKVPVYPIGPIVRTN-V-------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred HHhhcccccccCCceEEecCCCCCc-c-------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 87652 25699999997432 0 0122457999999998899999999999999999999999999999
Q ss_pred CCceEEEECCCC--------------CCCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCc
Q 047833 308 GKNFIWVVRPPI--------------GFDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVP 372 (473)
Q Consensus 308 ~~~~i~~~~~~~--------------~~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP 372 (473)
+++|||++..+. +..+++ .++....++++.+|+||.+||+|+++++|||||||||++|++++|||
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP 375 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVP 375 (470)
T ss_pred CCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCC
Confidence 999999996321 012223 33334445788899999999999999999999999999999999999
Q ss_pred EEeccccccchhhHHHHHHhhcceEEEec-CCCCccCHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHhccccccc
Q 047833 373 IIGWPLAAEQFYNSKLLEEEIGVCVEVAR-GKSSEVLKKDIAAKIELVMNE-TEKGIELRKNAYEVREIIKNAFKNEENF 450 (473)
Q Consensus 373 ~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~-~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 450 (473)
||++|+++||+.||+++++.||+|+++.. +....++.++|+++|++||.+ .++|+++|+||++|++..++|+ .+
T Consensus 376 ~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av----~e 451 (470)
T PLN03015 376 IVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAW----SH 451 (470)
T ss_pred EEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh----cC
Confidence 99999999999999999778899999952 112468999999999999963 1378899999999999999999 99
Q ss_pred CCcHHHHHHHHHHHHH
Q 047833 451 QGSSVKAMNQFLNAAS 466 (473)
Q Consensus 451 ~g~~~~~~~~~~~~~~ 466 (473)
||||.+++++|+++++
T Consensus 452 GGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 452 GGSSYNSLFEWAKRCY 467 (470)
T ss_pred CCcHHHHHHHHHHhcc
Confidence 9999999999998763
No 16
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3e-60 Score=471.22 Aligned_cols=434 Identities=27% Similarity=0.410 Sum_probs=329.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC----cEEEEEcCCcchh----hhhcc----CCCCCCceEEecCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNK----YTITFVNTPLNLR----KLKSS----VPQNSSINLLEIPFDSIDHN 72 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rG----h~Vt~~~~~~~~~----~v~~~----~~~~~~~~~~~~~~~~~~~~ 72 (473)
+.||+++|++++||++|++.||+.|.. +| +.|||++++.+.. .+... ......++|..+|+. .
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~ 77 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV----E 77 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC----C
Confidence 459999999999999999999999999 87 8999999876421 22221 000025888988854 1
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHH
Q 047833 73 LPPCTENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGF 152 (473)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~ 152 (473)
++++.+ . .. ..+......+.+.+.++++... . +++|||+|.++.|+..+|+.+|||++.|+++++...
T Consensus 78 ~p~~~e---~-~~---~~~~~~~~~~~~~l~~~L~~l~----~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~ 145 (480)
T PLN00164 78 PPTDAA---G-VE---EFISRYIQLHAPHVRAAIAGLS----C-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAML 145 (480)
T ss_pred CCCccc---c-HH---HHHHHHHHhhhHHHHHHHHhcC----C-CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHH
Confidence 222211 0 11 1222234456666777776641 1 359999999999999999999999999999999988
Q ss_pred HHHhhhhccCCCC---CCC-CCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccch
Q 047833 153 ACYYSLWVNLPHR---NMD-SDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDK 228 (473)
Q Consensus 153 ~~~~~~~~~~p~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (473)
..+.+.+...... ... .+...+|+++. ++..+++....... +.....+........+++++++||+.+||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~ 220 (480)
T PLN00164 146 ALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEP 220 (480)
T ss_pred HHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhH
Confidence 8777653321110 000 12344777776 77777776544321 222333444445567788999999999999
Q ss_pred hHHHHHHhhc------CCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHH
Q 047833 229 IGLMYFKRKF------GRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAM 302 (473)
Q Consensus 229 ~~~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~ 302 (473)
.+++.++..+ .++++.|||+...... ......+++|.+||+.++++++|||||||....+.+++.+++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~-----~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~ 295 (480)
T PLN00164 221 GVLAAIADGRCTPGRPAPTVYPIGPVISLAFT-----PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAA 295 (480)
T ss_pred HHHHHHHhccccccCCCCceEEeCCCcccccc-----CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHH
Confidence 9999987642 1579999999743210 0012345689999999988999999999998889999999999
Q ss_pred HHHhCCCceEEEECCCCC-------------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHh
Q 047833 303 ALEASGKNFIWVVRPPIG-------------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALS 368 (473)
Q Consensus 303 al~~~~~~~i~~~~~~~~-------------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~ 368 (473)
+|+..+.+|||++..... ..+++ ..+....++++.+|+||.+||+|+++++|||||||||++|+++
T Consensus 296 gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~ 375 (480)
T PLN00164 296 GLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLW 375 (480)
T ss_pred HHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHH
Confidence 999999999999974310 02223 3334456688889999999999999999999999999999999
Q ss_pred hCCcEEeccccccchhhHHHHHHhhcceEEEecC-C-CCccCHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHhcc
Q 047833 369 HGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARG-K-SSEVLKKDIAAKIELVMNETE-KGIELRKNAYEVREIIKNAFK 445 (473)
Q Consensus 369 ~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~-~-~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~a~~l~~~~~~~~~ 445 (473)
+|||||++|+++||+.||+++++.||+|+.+... + ...+++++|+++|+++|.+++ +|+++|+||+++++.+++++
T Consensus 376 ~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~- 454 (480)
T PLN00164 376 HGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAV- 454 (480)
T ss_pred cCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999887667999999641 0 124799999999999998865 58899999999999999999
Q ss_pred cccccCCcHHHHHHHHHHHHHhhh
Q 047833 446 NEENFQGSSVKAMNQFLNAASMVK 469 (473)
Q Consensus 446 ~~~~~~g~~~~~~~~~~~~~~~~~ 469 (473)
.+||||.+++++|++.+++++
T Consensus 455 ---~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 455 ---EEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred ---cCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999998765
No 17
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=9.6e-60 Score=462.06 Aligned_cols=437 Identities=25% Similarity=0.405 Sum_probs=321.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEEcCCcch-hhh----hccCCCCCCceEEecCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNK--YTITFVNTPLNL-RKL----KSSVPQNSSINLLEIPFDSIDHNLPPCT 77 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rG--h~Vt~~~~~~~~-~~v----~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (473)
++|++++|++++||++|++.||+.|.. +| ..|||++++.+. ..+ .+......+++|..+|.. ...+..
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~~- 77 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPEL---EEKPTL- 77 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCC---CCCCcc-
Confidence 469999999999999999999999999 98 999999988764 212 111000036899999832 111110
Q ss_pred CCCCCCChhhHHHHHHHHHhhhH----HHHHHHHhHhhhcCCCCc-cEEEECCCcchHHHHHHHhCCceEEEecchHHHH
Q 047833 78 ENTDSVPYHLVSKLIEATLSFKP----HFKKLVNDLIDEQNGYKP-LCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGF 152 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~p-D~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~ 152 (473)
.... .....+...+....+ .+.+++++.. ..+ +| +|||+|.++.|+..+|+++|||.+.++++++...
T Consensus 78 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~ 150 (468)
T PLN02207 78 GGTQ----SVEAYVYDVIEKNIPLVRNIVMDILSSLA--LDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFL 150 (468)
T ss_pred cccc----CHHHHHHHHHHhcchhHHHHHHHHHHHhc--cCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHH
Confidence 0111 111233334434433 3444444321 122 34 9999999999999999999999999999998887
Q ss_pred HHHhhhhccC-CCCCC---C-CCcccCCCC-CCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCcccc
Q 047833 153 ACYYSLWVNL-PHRNM---D-SDECVLPDF-PEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEEL 226 (473)
Q Consensus 153 ~~~~~~~~~~-p~~~~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (473)
..+.+..... +.... . .....+|++ +. ++..+++.++... .. ...+.+......+++++++||+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~~~vlvNtf~~L 223 (468)
T PLN02207 151 AMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE---DG-YDAYVKLAILFTKANGILVNSSFDI 223 (468)
T ss_pred HHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC---cc-HHHHHHHHHhcccCCEEEEEchHHH
Confidence 7766543221 11100 0 122457776 44 7777777655321 12 3333344456778899999999999
Q ss_pred chhHHHHHHh-hcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHH
Q 047833 227 DKIGLMYFKR-KFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALE 305 (473)
Q Consensus 227 ~~~~~~~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 305 (473)
|+++++.++. ...++++.|||++....... ........++|.+||++++++++|||||||....+.+++.+++.+|+
T Consensus 224 E~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~--~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~ 301 (468)
T PLN02207 224 EPYSVNHFLDEQNYPSVYAVGPIFDLKAQPH--PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLE 301 (468)
T ss_pred hHHHHHHHHhccCCCcEEEecCCcccccCCC--CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHH
Confidence 9999888865 23478999999986431110 00001123679999999988899999999999999999999999999
Q ss_pred hCCCceEEEECCCC----CCCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccc
Q 047833 306 ASGKNFIWVVRPPI----GFDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAA 380 (473)
Q Consensus 306 ~~~~~~i~~~~~~~----~~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~ 380 (473)
.++++|||+++... +..|++ .++ .++|..+.+|+||.+||+|+++++|||||||||++|++++|||||++|+++
T Consensus 302 ~~~~~flW~~r~~~~~~~~~lp~~f~er-~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~ 380 (468)
T PLN02207 302 LCQYRFLWSLRTEEVTNDDLLPEGFLDR-VSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYA 380 (468)
T ss_pred HCCCcEEEEEeCCCccccccCCHHHHhh-cCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccc
Confidence 99999999997421 112233 222 356677889999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhcceEEEecC----CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHH
Q 047833 381 EQFYNSKLLEEEIGVCVEVARG----KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVK 456 (473)
Q Consensus 381 DQ~~nA~~v~~~lG~g~~l~~~----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 456 (473)
||+.||+++++.+|+|+++..+ ....++.++|+++|+++|.+ ++++||+||+++++.+++|+ .+||||.+
T Consensus 381 DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~----~~GGSS~~ 454 (468)
T PLN02207 381 EQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRAT----KNGGSSFA 454 (468)
T ss_pred cchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHh----cCCCcHHH
Confidence 9999999988767999987421 11346999999999999973 35699999999999999999 99999999
Q ss_pred HHHHHHHHHHhhh
Q 047833 457 AMNQFLNAASMVK 469 (473)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (473)
++++|++.++.-+
T Consensus 455 ~l~~~v~~~~~~~ 467 (468)
T PLN02207 455 AIEKFIHDVIGIK 467 (468)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887654
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.5e-60 Score=461.22 Aligned_cols=432 Identities=25% Similarity=0.410 Sum_probs=322.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc-hhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN-LRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
.||+++|++++||++|++.||+.|...+|+.|||++++.+ ...+........+++|..++ ++++.+......
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-----dglp~g~~~~~~-- 76 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-----DGFDDGVISNTD-- 76 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-----CCCCCccccccc--
Confidence 5999999999999999999999999416999999999864 22221111100358888876 366655332111
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCC
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLPH 164 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~ 164 (473)
.....+......+.+.+.+++++... .+.+++|||+|.+..|+..+|+.+|||.+.++++++.....+++.....
T Consensus 77 -~~~~~~~~~~~~~~~~l~~~l~~l~~--~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~-- 151 (455)
T PLN02152 77 -DVQNRLVNFERNGDKALSDFIEANLN--GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN-- 151 (455)
T ss_pred -cHHHHHHHHHHhccHHHHHHHHHhhc--cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--
Confidence 11133444445666777777776521 1203499999999999999999999999999999999888877654211
Q ss_pred CCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccC--CcEEEEcCccccchhHHHHHHhhcCCCe
Q 047833 165 RNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMN--ADGILVNTVEELDKIGLMYFKRKFGRSV 242 (473)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 242 (473)
.....+|+++. ++..+++.++............+.+....... ++++++||+++||+.+++.+.. ..+
T Consensus 152 ----~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v 221 (455)
T PLN02152 152 ----NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEM 221 (455)
T ss_pred ----CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCE
Confidence 11234677765 67778877664322223334444444443322 4689999999999999998864 269
Q ss_pred EEecccCCCccCCCCC-CC-CC-CCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCC
Q 047833 243 WPIGPVLLSTENRGGA-GK-EY-GISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPI 319 (473)
Q Consensus 243 ~~vGp~~~~~~~~~~~-~~-~~-~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 319 (473)
+.|||+.......... .. .. ...+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||++....
T Consensus 222 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~ 301 (455)
T PLN02152 222 VAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKL 301 (455)
T ss_pred EEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 9999997532100000 00 00 123457999999998889999999999999999999999999999999999997421
Q ss_pred C-------CC------ccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhH
Q 047833 320 G-------FD------INSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNS 386 (473)
Q Consensus 320 ~-------~~------~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA 386 (473)
. .. +++.....++|..+.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 381 (455)
T PLN02152 302 NREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANA 381 (455)
T ss_pred ccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHH
Confidence 0 00 1121111356778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHH
Q 047833 387 KLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAA 465 (473)
Q Consensus 387 ~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (473)
+++++.||+|+.+..++...++.++|+++|+++|+++ +++||+||++|++.+++++ .+||||.+++++|++.+
T Consensus 382 ~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~----~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 382 KLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAG----GEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHh
Confidence 9999877888887642223569999999999999865 5589999999999999999 99999999999999975
No 19
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=7.7e-60 Score=461.37 Aligned_cols=423 Identities=26% Similarity=0.475 Sum_probs=317.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEE--EcCCcchhhhh----ccCCCCCCceEEecCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNK--YTITF--VNTPLNLRKLK----SSVPQNSSINLLEIPFDSIDHNLPPCT 77 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rG--h~Vt~--~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (473)
.||+++|++++||++|++.||+.|.. +| +.||+ ++++.+...+. .......+++|..+|++. +.+...
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~~ 79 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSSSS 79 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCCcc
Confidence 49999999999999999999999999 98 44555 55544322211 110000368999888541 111111
Q ss_pred CCCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhh
Q 047833 78 ENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYS 157 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 157 (473)
. .. ......+........+.+.++++++... . +++|||+|.++.|+..+|+.+|||.+.++++++..+..+.+
T Consensus 80 ~--~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 80 T--SR--HHHESLLLEILCFSNPSVHRTLFSLSRN--F-NVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred c--cc--cCHHHHHHHHHHhhhHHHHHHHHhcCCC--C-CceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 1 11 1111233444455666667777665211 1 34999999999999999999999999999999998888776
Q ss_pred hhccC-C--CCC-CCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHH
Q 047833 158 LWVNL-P--HRN-MDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMY 233 (473)
Q Consensus 158 ~~~~~-p--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (473)
.+... + ... .......+|+++. ++..+++....... ......+.+.......++++++||+.+||+.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~ 227 (451)
T PLN03004 153 LPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKA 227 (451)
T ss_pred HHhccccccccccccCCeecCCCCCC---CChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHH
Confidence 43211 1 111 1112245777776 77888887665321 23345555555666778899999999999999999
Q ss_pred HHhhcC-CCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceE
Q 047833 234 FKRKFG-RSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFI 312 (473)
Q Consensus 234 ~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 312 (473)
++..+. ++++.|||+........ . ....+.+|.+||+.++++++|||||||....+.+++.+++.+|+.++.+||
T Consensus 228 l~~~~~~~~v~~vGPl~~~~~~~~--~--~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~Fl 303 (451)
T PLN03004 228 ITEELCFRNIYPIGPLIVNGRIED--R--NDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFL 303 (451)
T ss_pred HHhcCCCCCEEEEeeeccCccccc--c--ccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 977543 68999999975321000 0 011235799999999889999999999998999999999999999999999
Q ss_pred EEECCCCC----------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEecccccc
Q 047833 313 WVVRPPIG----------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAE 381 (473)
Q Consensus 313 ~~~~~~~~----------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~D 381 (473)
|+++...+ ..+++ .++....|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++|
T Consensus 304 W~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 304 WVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 99984310 12334 45555689999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHH
Q 047833 382 QFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVK 456 (473)
Q Consensus 382 Q~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 456 (473)
|+.||+++++.||+|++++.++...++.++|+++|+++|+++ +||+||+++++..+.|+ .+||||++
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av----~~GGSS~~ 450 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELAL----TETGSSHT 450 (451)
T ss_pred chhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHh----cCCCCCCC
Confidence 999999998777999999752113579999999999999988 89999999999999999 99998865
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-58 Score=462.06 Aligned_cols=429 Identities=27% Similarity=0.423 Sum_probs=317.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEEcCCcchhh-------hhccCCC-CCCceEEecCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNK--YTITFVNTPLNLRK-------LKSSVPQ-NSSINLLEIPFDSIDHNLP 74 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rG--h~Vt~~~~~~~~~~-------v~~~~~~-~~~~~~~~~~~~~~~~~l~ 74 (473)
|.||+++|++++||++|++.||+.|.. +| ..|||++++.+... +.+.... ..+++|..+|++. +
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-----~ 75 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD-----Q 75 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----C
Confidence 469999999999999999999999999 98 89999998876432 1111000 1368999988541 1
Q ss_pred CCCCCCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhh---cCCCCc-cEEEECCCcchHHHHHHHhCCceEEEecchHH
Q 047833 75 PCTENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDE---QNGYKP-LCIITDMFFGWCKEIAQEYGIFHAIFIGGGGF 150 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~p-D~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~ 150 (473)
+. .... .+...+....+.+.+.++++... ..+ +| +|||+|.++.|+..+|+.+|||++.|+++++.
T Consensus 76 ~~----~~~~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~ 145 (481)
T PLN02554 76 PT----TEDP-----TFQSYIDNQKPKVRDAVAKLVDDSSTPSS-PRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNAT 145 (481)
T ss_pred Cc----ccch-----HHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHH
Confidence 11 0011 22223334444455555544321 122 34 89999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCC-----C-CCCC-CcccCCCCC-CCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcC
Q 047833 151 GFACYYSLWVNLPH-----R-NMDS-DECVLPDFP-EASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNT 222 (473)
Q Consensus 151 ~~~~~~~~~~~~p~-----~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
.+..+.+.+..... . .... ....+|+++ . ++..+++..... ......+.+.......++++++||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p---l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt 218 (481)
T PLN02554 146 FLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP---YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNT 218 (481)
T ss_pred HHHHHHhhhhhccccccCccccCCCCceeECCCCCCC---CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEec
Confidence 98888766432111 0 0111 224467663 2 555566543321 123344455556677889999999
Q ss_pred ccccchhHHHHHHhh--cCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHH
Q 047833 223 VEELDKIGLMYFKRK--FGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQL 300 (473)
Q Consensus 223 ~~~l~~~~~~~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~ 300 (473)
+.+|++.+...+.+. ..++++.|||+........ ......+++|.+||++++++++|||||||+...+.+++.++
T Consensus 219 ~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~l 295 (481)
T PLN02554 219 VAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREI 295 (481)
T ss_pred hHHHhHHHHHHHHhcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 999999998888753 3368999999943221100 00123456899999999888999999999988899999999
Q ss_pred HHHHHhCCCceEEEECCCCC---------------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHH
Q 047833 301 AMALEASGKNFIWVVRPPIG---------------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVL 364 (473)
Q Consensus 301 ~~al~~~~~~~i~~~~~~~~---------------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~ 364 (473)
+.+|+.++++|||+++.... ..+.+ .++ .++|+++.+|+||.+||+|+++++|||||||||++
T Consensus 296 a~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 374 (481)
T PLN02554 296 AIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-TKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSIL 374 (481)
T ss_pred HHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-hccCceEEeeCCHHHHhCCcccCcccccCccchHH
Confidence 99999999999999975210 01222 112 24567778999999999999999999999999999
Q ss_pred HHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecC--------CCCccCHHHHHHHHHHHHc-CChhhHHHHHHHHH
Q 047833 365 EALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARG--------KSSEVLKKDIAAKIELVMN-ETEKGIELRKNAYE 435 (473)
Q Consensus 365 eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~--------~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~ 435 (473)
|++++|||||++|+++||+.||+++.+.+|+|+.+... ....++.++|+++|+++|+ |+ +||+||++
T Consensus 375 Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~ 450 (481)
T PLN02554 375 ESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKE 450 (481)
T ss_pred HHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHH
Confidence 99999999999999999999996544455999999631 1246899999999999997 55 89999999
Q ss_pred HHHHHHHhcccccccCCcHHHHHHHHHHHHHhh
Q 047833 436 VREIIKNAFKNEENFQGSSVKAMNQFLNAASMV 468 (473)
Q Consensus 436 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (473)
+++.+++|+ .+||||.+++++|++.++.+
T Consensus 451 l~~~~~~av----~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 451 MSEKCHVAL----MDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHh----cCCChHHHHHHHHHHHHHhh
Confidence 999999999 99999999999999988764
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-57 Score=452.83 Aligned_cols=439 Identities=27% Similarity=0.416 Sum_probs=312.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC---cEEEEEcCCcch-----hhhhccCCCCCCceEEecCCCCCCCCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNK---YTITFVNTPLNL-----RKLKSSVPQNSSINLLEIPFDSIDHNLPP 75 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rG---h~Vt~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (473)
++.||+++|++++||++|++.||+.|.. +| +.||++++.... ..+........+++|..+|++. + ++
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~ 76 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PP 76 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Cc
Confidence 3569999999999999999999999999 99 456777654321 1122111100368999998641 1 21
Q ss_pred CCCCCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhh--cCCC-CccEEEECCCcchHHHHHHHhCCceEEEecchHHHH
Q 047833 76 CTENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDE--QNGY-KPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGF 152 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~ 152 (473)
..+....... ..+......+.+.+.+.++++... ..+. +++|||+|.++.|+..+|+++|||++.++++++..+
T Consensus 77 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 77 PMELFVKASE---AYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred cccccccchH---HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 1110011111 233334445555566666554321 1120 249999999999999999999999999999999887
Q ss_pred HHHhhhhcc---CCCC--C-CCCCcccCCCCC-CCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccc
Q 047833 153 ACYYSLWVN---LPHR--N-MDSDECVLPDFP-EASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEE 225 (473)
Q Consensus 153 ~~~~~~~~~---~p~~--~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (473)
..+++.+.. .+.. . ...+...+|+++ . ++..+++....... ....+.+......+++++++||+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~---l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~e 226 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS---VPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTE 226 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCC---CChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHH
Confidence 776654321 1100 0 001234467763 3 45556654333211 1223334445567788999999999
Q ss_pred cchhHHHHHHhhc--CCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHH
Q 047833 226 LDKIGLMYFKRKF--GRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMA 303 (473)
Q Consensus 226 l~~~~~~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a 303 (473)
||+.+++.++... .+++++|||+........ .........+|.+||+.++++++|||||||+...+.+++.+++.+
T Consensus 227 LE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~--~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~ 304 (475)
T PLN02167 227 LEPNAFDYFSRLPENYPPVYPVGPILSLKDRTS--PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQA 304 (475)
T ss_pred HHHHHHHHHHhhcccCCeeEEeccccccccccC--CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHH
Confidence 9999999886541 168999999976431100 000012336799999999888999999999988899999999999
Q ss_pred HHhCCCceEEEECCCCC-------CCccc-cccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEe
Q 047833 304 LEASGKNFIWVVRPPIG-------FDINS-EIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIG 375 (473)
Q Consensus 304 l~~~~~~~i~~~~~~~~-------~~~~~-~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~ 375 (473)
|+.++++|||+++.... ..+++ .++.. +..++++|+||.+||+|++|++|||||||||++|++++|||||+
T Consensus 305 l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~-~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~ 383 (475)
T PLN02167 305 LELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVM-GRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIAT 383 (475)
T ss_pred HHhCCCcEEEEEecCcccccchhhhCChHHHHHhc-cCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEe
Confidence 99999999999974311 01222 11221 22356799999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHhhcceEEEecC----CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccC
Q 047833 376 WPLAAEQFYNSKLLEEEIGVCVEVARG----KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQ 451 (473)
Q Consensus 376 ~P~~~DQ~~nA~~v~~~lG~g~~l~~~----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 451 (473)
+|+++||+.||+++.+.+|+|+.+... +...+++++|+++|+++|.++ + +||+||+++++.+++++ .+|
T Consensus 384 ~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~--~~r~~a~~~~~~~~~av----~~g 456 (475)
T PLN02167 384 WPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-D--VPRKKVKEIAEAARKAV----MDG 456 (475)
T ss_pred ccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-H--HHHHHHHHHHHHHHHHH----hCC
Confidence 999999999998755566999999641 013579999999999999764 2 79999999999999999 999
Q ss_pred CcHHHHHHHHHHHHHh
Q 047833 452 GSSVKAMNQFLNAASM 467 (473)
Q Consensus 452 g~~~~~~~~~~~~~~~ 467 (473)
|||.+++++|++.+++
T Consensus 457 GsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 457 GSSFVAVKRFIDDLLG 472 (475)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999998875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-50 Score=405.58 Aligned_cols=416 Identities=19% Similarity=0.219 Sum_probs=284.8
Q ss_pred CcEEEEE-cCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCC-C-CCCC-CC-CC
Q 047833 5 KETIVLF-PFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSID-H-NLPP-CT-EN 79 (473)
Q Consensus 5 ~~~il~~-~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~-~l~~-~~-~~ 79 (473)
.+||+.+ |.++.+|+.-+-+|+++|++ |||+||++++...... ..... .+++...++...+. . .+.. .. ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~~~-~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRVYY-ASHLC--GNITEIDASLSVEYFKKLVKSSAVFRK 95 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccccccc-ccCCC--CCEEEEEcCCChHHHHHHHhhhhHHHh
Confidence 4678754 88999999999999999999 9999999987642111 10011 44454444321000 0 0000 00 00
Q ss_pred CCCC--ChhhH----HHHHHHH--HhhhHHHHHHHH--hHhhhcCCCCccEEEECCCcchHHHHHHHh-CCceEEEecch
Q 047833 80 TDSV--PYHLV----SKLIEAT--LSFKPHFKKLVN--DLIDEQNGYKPLCIITDMFFGWCKEIAQEY-GIFHAIFIGGG 148 (473)
Q Consensus 80 ~~~~--~~~~~----~~~~~~~--~~~~~~~~~~l~--~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~-giP~v~~~~~~ 148 (473)
.... ..... ..+.... ....+.+.++++ +. ++|+||+|.+..|+..+|+.+ ++|+|.++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~-------kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN-------KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC-------ceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 0000 00000 1111111 122445566665 33 799999999888999999999 99999888754
Q ss_pred HHHH----HH-HhhhhccCCCCCCC-CCcccCCCCCCCCcCCccccchhhhhcCCCChHHH-HHHH----HhccccCCcE
Q 047833 149 GFGF----AC-YYSLWVNLPHRNMD-SDECVLPDFPEASTIHATQLADYLRVADGSDSFSA-ILQK----VLPQWMNADG 217 (473)
Q Consensus 149 ~~~~----~~-~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~ 217 (473)
.... .. .+.++.|+|...+. .+.+.+.++..|..................+.+.+ .+.. ..+...+.+.
T Consensus 169 ~~~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l 248 (507)
T PHA03392 169 GLAENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQL 248 (507)
T ss_pred CchhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcE
Confidence 4322 22 45566677754433 44565655444322111000000000000111111 1111 1233455678
Q ss_pred EEEcCccccchhHHHHHHhhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCccc---CCH
Q 047833 218 ILVNTVEELDKIGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNT---IAT 294 (473)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~---~~~ 294 (473)
+++|+.+.++++ +++++++++|||+..+... ..++++++.+|++.++ +++|||||||+.. .+.
T Consensus 249 ~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~-------~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~ 314 (507)
T PHA03392 249 LFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKP-------PQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDN 314 (507)
T ss_pred EEEecCccccCC------CCCCCCeeeecccccCCCC-------CCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCH
Confidence 999999999866 6888999999999874311 2467889999999874 6799999999864 467
Q ss_pred HHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEE
Q 047833 295 SQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPII 374 (473)
Q Consensus 295 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l 374 (473)
+++..+++++++.+.+|||+++... .....|+|+.+.+|+||.+||+|+++++||||||.||++||+++|||+|
T Consensus 315 ~~~~~~l~a~~~l~~~viw~~~~~~------~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v 388 (507)
T PHA03392 315 EFLQMLLRTFKKLPYNVLWKYDGEV------EAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMV 388 (507)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCc------CcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEE
Confidence 8999999999999999999997431 1124589999999999999999999999999999999999999999999
Q ss_pred eccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcH
Q 047833 375 GWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSS 454 (473)
Q Consensus 375 ~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~ 454 (473)
++|+++||+.||+|++++ |+|+.+++ .+++.++|.++|+++|+|+ +|++||+++++.+++. . ....
T Consensus 389 ~iP~~~DQ~~Na~rv~~~-G~G~~l~~---~~~t~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~~-----p-~~~~ 454 (507)
T PHA03392 389 GLPMMGDQFYNTNKYVEL-GIGRALDT---VTVSAAQLVLAIVDVIENP----KYRKNLKELRHLIRHQ-----P-MTPL 454 (507)
T ss_pred ECCCCccHHHHHHHHHHc-CcEEEecc---CCcCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhC-----C-CCHH
Confidence 999999999999999977 99999998 8899999999999999999 9999999999999843 1 1225
Q ss_pred HHHHHHHHHHH
Q 047833 455 VKAMNQFLNAA 465 (473)
Q Consensus 455 ~~~~~~~~~~~ 465 (473)
.+++.-++.-+
T Consensus 455 ~~av~~iE~v~ 465 (507)
T PHA03392 455 HKAIWYTEHVI 465 (507)
T ss_pred HHHHHHHHHHH
Confidence 56665544433
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=7e-51 Score=414.44 Aligned_cols=392 Identities=23% Similarity=0.290 Sum_probs=239.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCC----
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDS---- 82 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 82 (473)
||+++|. +.||+.++..|+++|++ |||+||++++.... .+..... ..+++..++.......+.........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~-rGH~VTvl~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE-RGHNVTVLTPSPSS-SLNPSKP--SNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHH-H-TTSEEEHHHHHH-T--------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh-cCCceEEEEeeccc-ccccccc--cceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 6888885 78999999999999999 99999999875432 2222222 66677777643222222211110000
Q ss_pred --CChhhHHHHHHHH----Hhhh---------HHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecc
Q 047833 83 --VPYHLVSKLIEAT----LSFK---------PHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 83 --~~~~~~~~~~~~~----~~~~---------~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
............. .... +.+.+.+++. ++|++|+|.+..|+..+|+.+++|.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-------~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-------KFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-------HHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-------ccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 0000011111111 1111 1222334444 7999999999889999999999999886543
Q ss_pred hHHHH----H-HHhhhhccCCCCCCC-CCcccCCCCCCCCcCCc--cccchhhhhcCCCChHH----HHHHHHhccccCC
Q 047833 148 GGFGF----A-CYYSLWVNLPHRNMD-SDECVLPDFPEASTIHA--TQLADYLRVADGSDSFS----AILQKVLPQWMNA 215 (473)
Q Consensus 148 ~~~~~----~-~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 215 (473)
.+... . ..+.++.|+|...+. .+.+.+.++..+..... ..+...+... .+... ..-....+...+.
T Consensus 150 ~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 227 (500)
T PF00201_consen 150 TPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP--QDKLYKKYFGFPFSFRELLSNA 227 (500)
T ss_dssp CSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS---TTS-EEESS-GGGCHHHHHHH
T ss_pred cccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh--HHHHHhhhcccccccHHHHHHH
Confidence 32211 1 234455566654333 34455655444322111 0000111100 00000 0000111223344
Q ss_pred cEEEEcCccccchhHHHHHHhhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCccc-CCH
Q 047833 216 DGILVNTVEELDKIGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNT-IAT 294 (473)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~-~~~ 294 (473)
..+++|+.+.++.+ .+++|++.+||+++... ..+++.++.+|++...++++|||||||+.. .+.
T Consensus 228 ~l~l~ns~~~ld~p------rp~~p~v~~vGgl~~~~---------~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~ 292 (500)
T PF00201_consen 228 SLVLINSHPSLDFP------RPLLPNVVEVGGLHIKP---------AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPE 292 (500)
T ss_dssp HHCCSSTEEE----------HHHHCTSTTGCGC-S-------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HH
T ss_pred HHHhhhccccCcCC------cchhhcccccCcccccc---------ccccccccchhhhccCCCCEEEEecCcccchhHH
Confidence 55677888777744 45568999999998765 246789999999985568999999999976 344
Q ss_pred HHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEE
Q 047833 295 SQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPII 374 (473)
Q Consensus 295 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l 374 (473)
+....+++++++.+.+|||+++.. .....++|+++.+|+||.+||.|+++++||||||+||+.||+++|||||
T Consensus 293 ~~~~~~~~~~~~~~~~~iW~~~~~-------~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l 365 (500)
T PF00201_consen 293 EKLKEIAEAFENLPQRFIWKYEGE-------PPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPML 365 (500)
T ss_dssp HHHHHHHHHHHCSTTEEEEEETCS-------HGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EE
T ss_pred HHHHHHHHHHhhCCCccccccccc-------ccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCcc
Confidence 558889999999999999999643 3345578999999999999999999999999999999999999999999
Q ss_pred eccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 047833 375 GWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKN 442 (473)
Q Consensus 375 ~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~ 442 (473)
++|+++||+.||++++++ |+|+.+++ .+++.++|.++|+++|+|+ +|++||+++++.+++
T Consensus 366 ~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 366 GIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREVLENP----SYKENAKRLSSLFRD 425 (500)
T ss_dssp E-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHHHHSH----HHHHHHHHHHHTTT-
T ss_pred CCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHHHhhh----HHHHHHHHHHHHHhc
Confidence 999999999999999988 99999998 8999999999999999999 999999999999974
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.7e-44 Score=356.26 Aligned_cols=391 Identities=18% Similarity=0.205 Sum_probs=261.0
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHH
Q 047833 11 FPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSK 90 (473)
Q Consensus 11 ~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 90 (473)
+.+|++||++|++.||++|++ +||+|+|++++.+.+.+++ .|+.|..++........... .........+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 72 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPE--NTEEEPIDIIEK 72 (392)
T ss_pred CCCCccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCcccccccc--ccCcchHHHHHH
Confidence 367999999999999999999 9999999999999999999 77788887743111111111 000111112223
Q ss_pred HHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCCCCCCCC
Q 047833 91 LIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLPHRNMDSD 170 (473)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 170 (473)
+......+.+.+.++++++ +||+||+|.+++++..+|+.+|||+|.+++.+.... .. + ...+.......
T Consensus 73 ~~~~~~~~~~~l~~~~~~~-------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~--~~-~-~~~~~~~~~~~ 141 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKGD-------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE--EF-E-EMVSPAGEGSA 141 (392)
T ss_pred HHHHHHHHHHHHHHHhcCC-------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc--cc-c-ccccccchhhh
Confidence 3333333444455555665 899999999888899999999999999865432110 00 0 00000000000
Q ss_pred cccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCCeEEecccCC
Q 047833 171 ECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRSVWPIGPVLL 250 (473)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~ 250 (473)
...+............+..+............. . ........+..+. +++.+.+..|+++++++||+..
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~---~--~~~~~~~~l~~~~-----~~l~~~~~~~~~~~~~~Gp~~~ 210 (392)
T TIGR01426 142 -EEGAIAERGLAEYVARLSALLEEHGITTPPVEF---L--AAPRRDLNLVYTP-----KAFQPAGETFDDSFTFVGPCIG 210 (392)
T ss_pred -hhhccccchhHHHHHHHHHHHHHhCCCCCCHHH---H--hcCCcCcEEEeCC-----hHhCCCccccCCCeEEECCCCC
Confidence 000000000000000011111111000000000 0 0011112233333 3343445678899999999876
Q ss_pred CccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCcccccccc
Q 047833 251 STENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCS 330 (473)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 330 (473)
... +...|....+++++||||+||+.....+.+..+++++.+.+.++|+.+++.. +.. .....
T Consensus 211 ~~~--------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~--~~~-~~~~~ 273 (392)
T TIGR01426 211 DRK--------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV--DPA-DLGEL 273 (392)
T ss_pred Ccc--------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC--Chh-HhccC
Confidence 541 1123666556788999999998766667888899999999999999997542 111 12235
Q ss_pred CCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHH
Q 047833 331 GQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKK 410 (473)
Q Consensus 331 ~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~ 410 (473)
++|+.+.+|+||.++|++++ +||||||+||++||+++|+|+|++|...||+.||+++++. |+|+.+.. .+++.+
T Consensus 274 ~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~---~~~~~~ 347 (392)
T TIGR01426 274 PPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPP---EEVTAE 347 (392)
T ss_pred CCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecc---ccCCHH
Confidence 78999999999999999977 6999999999999999999999999999999999999977 99999987 789999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 411 DIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 411 ~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+|.++|+++|+|+ +|++++++++++++ ..+| ..++.+.+++.++
T Consensus 348 ~l~~ai~~~l~~~----~~~~~~~~l~~~~~-------~~~~-~~~aa~~i~~~~~ 391 (392)
T TIGR01426 348 KLREAVLAVLSDP----RYAERLRKMRAEIR-------EAGG-ARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHHHhcCH----HHHHHHHHHHHHHH-------HcCC-HHHHHHHHHHhhc
Confidence 9999999999999 89999999999998 3455 6777777776554
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.8e-44 Score=356.28 Aligned_cols=370 Identities=15% Similarity=0.107 Sum_probs=246.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCC-CCC--CCC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPC-TEN--TDS 82 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~ 82 (473)
+||+|+++|+.||++|++.||++|++ |||+|+|++++.+...++. .|++|..++.+......... ... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhcccccccc
Confidence 48999999999999999999999999 9999999999999999988 77788877743111000000 000 000
Q ss_pred --CChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhc
Q 047833 83 --VPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWV 160 (473)
Q Consensus 83 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 160 (473)
........+......+.+.+.+.++++ +||+||+|.+..++..+|+++|||++.+++.+........++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~- 146 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAARDW-------GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL- 146 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc-
Confidence 000111222233344444455555555 8999999998888899999999999999876543211111000
Q ss_pred cCCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhcccc---------CCcEEEEcCccccchhHH
Q 047833 161 NLPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWM---------NADGILVNTVEELDKIGL 231 (473)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~ 231 (473)
. ............................... .....+.... +++
T Consensus 147 ---------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-----~~~ 200 (401)
T cd03784 147 ---------------G------RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS-----PAV 200 (401)
T ss_pred ---------------c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecC-----ccc
Confidence 0 0000000000000000000111111111000 0011111111 222
Q ss_pred HHHHhhcCCCeEEecc-cCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCC-HHHHHHHHHHHHhCCC
Q 047833 232 MYFKRKFGRSVWPIGP-VLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIA-TSQMMQLAMALEASGK 309 (473)
Q Consensus 232 ~~~~~~~~~~~~~vGp-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~ 309 (473)
......|+++..++|+ +...+ . ....+.++..|++.. +++|||++||+.... ...+..+++++...+.
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~-~-------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~ 270 (401)
T cd03784 201 LPPPPDWPRFDLVTGYGFRDVP-Y-------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQ 270 (401)
T ss_pred CCCCCCccccCcEeCCCCCCCC-C-------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCC
Confidence 2234567777788863 33222 1 123456777888654 679999999998744 5677889999999999
Q ss_pred ceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHH
Q 047833 310 NFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLL 389 (473)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v 389 (473)
++||++|... . .....++|+.+.+|+||.++|++++ +||||||+||++|++++|||+|++|...||+.||+++
T Consensus 271 ~~i~~~g~~~-~----~~~~~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~ 343 (401)
T cd03784 271 RAILSLGWGG-L----GAEDLPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARV 343 (401)
T ss_pred eEEEEccCcc-c----cccCCCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH
Confidence 9999997541 0 1134578999999999999999977 6999999999999999999999999999999999999
Q ss_pred HHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 047833 390 EEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIK 441 (473)
Q Consensus 390 ~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~ 441 (473)
++. |+|+.+.. ..++.++|.++|+++++++ +++++++++++++
T Consensus 344 ~~~-G~g~~l~~---~~~~~~~l~~al~~~l~~~-----~~~~~~~~~~~~~ 386 (401)
T cd03784 344 AEL-GAGPALDP---RELTAERLAAALRRLLDPP-----SRRRAAALLRRIR 386 (401)
T ss_pred HHC-CCCCCCCc---ccCCHHHHHHHHHHHhCHH-----HHHHHHHHHHHHH
Confidence 977 99999987 6789999999999999965 7777888888886
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-43 Score=343.80 Aligned_cols=395 Identities=18% Similarity=0.168 Sum_probs=256.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
++||+++..|+.||++|+++||++|.+ +||+|+|++++.+.+.+++ .++.|..++.. +. ............
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~-~~--~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEA-----AGLAFVAYPIR-DS--ELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHH-----hCcceeecccc-CC--hhhhhhhhhhcc
Confidence 468999999999999999999999999 9999999999999999999 66677777632 11 011111111111
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCC
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLPH 164 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~ 164 (473)
. .+.............+.+++.+. .||+|+.|.....+ .+++..++|++...............+...+.
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 141 (406)
T COG1819 72 K-SFRRLLQQFKKLIRELLELLREL-------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVG- 141 (406)
T ss_pred c-hhHHHhhhhhhhhHHHHHHHHhc-------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccc-
Confidence 1 11112223334445556677777 89999999765544 88999999999876554433222221111111
Q ss_pred CCCCCCcccCCCCCCCCcC---CccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHH---hhc
Q 047833 165 RNMDSDECVLPDFPEASTI---HATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFK---RKF 238 (473)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~ 238 (473)
.........-.++..... ............. .........+.... ..+-+.+...+.+... ..+
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 211 (406)
T COG1819 142 -IAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRR-NLGLELGLPNIRRL--------FASGPLLEIAYTDVLFPPGDRL 211 (406)
T ss_pred -ccccccccccccChhhccccccchhhhhhhhhhh-hccccccccchHHH--------hcCCCCccccccccccCCCCCC
Confidence 000000000000000000 0000000000000 00000000000011 1111111111111100 234
Q ss_pred CCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCC
Q 047833 239 GRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPP 318 (473)
Q Consensus 239 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 318 (473)
|-...++||+.... ..+...|. ..++++||+|+||.... .+++..++++|...+.++|+.++..
T Consensus 212 p~~~~~~~~~~~~~-------------~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~ 275 (406)
T COG1819 212 PFIGPYIGPLLGEA-------------ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA 275 (406)
T ss_pred CCCcCccccccccc-------------cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc
Confidence 45666777777665 22233332 23578999999999977 9999999999999999999999741
Q ss_pred CCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEE
Q 047833 319 IGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVE 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~ 398 (473)
.. .....|+|+.+.+|+||.++|++++ +||||||+|||+|||++|||+|++|...||+.||.|+++. |+|+.
T Consensus 276 ---~~--~~~~~p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~ 347 (406)
T COG1819 276 ---RD--TLVNVPDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIA 347 (406)
T ss_pred ---cc--ccccCCCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCcee
Confidence 00 3456789999999999999999988 5999999999999999999999999999999999999977 99999
Q ss_pred EecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Q 047833 399 VARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASM 467 (473)
Q Consensus 399 l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (473)
+.. ..++.+.|+++|+++|+++ .|+++++++++.++ .++| ..++.+.+.+..++
T Consensus 348 l~~---~~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~-------~~~g-~~~~a~~le~~~~~ 401 (406)
T COG1819 348 LPF---EELTEERLRAAVNEVLADD----SYRRAAERLAEEFK-------EEDG-PAKAADLLEEFARE 401 (406)
T ss_pred cCc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhh-------hccc-HHHHHHHHHHHHhc
Confidence 998 8999999999999999999 99999999999998 4466 44455555444443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3e-40 Score=336.54 Aligned_cols=406 Identities=28% Similarity=0.394 Sum_probs=248.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceE---EecCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINL---LEIPFDSIDHNLPPCTENTD 81 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 81 (473)
..+++++++|++||++|++.+|+.|.+ +||+||++++.......... .....+.. ...++....++++.......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 467888899999999999999999999 99999999988765544331 10011111 11111101112222111000
Q ss_pred CCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhC-CceEEEecchHHHHHHHh-hhh
Q 047833 82 SVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYG-IFHAIFIGGGGFGFACYY-SLW 159 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~-~~~ 159 (473)
.................+.+.+......... ++|++|+|.+..+...++.... ++...+.+.+........ .+.
T Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 83 ---LDISESLLELNKTCEDLLRDPLEKLLLLKSE-KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred ---HHHHHHHHHHHHHHHHHHhchHHHHHHhhcC-CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 0000111111112222222222111111111 3999999998656666666654 888887776666543332 233
Q ss_pred ccCCCCCCCC--CcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHh-----------ccccCCcEEEEcCcccc
Q 047833 160 VNLPHRNMDS--DECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVL-----------PQWMNADGILVNTVEEL 226 (473)
Q Consensus 160 ~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l 226 (473)
.+.|...+.. +.+.++++..+ +....+..................... ....+....++|+..-+
T Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 159 SYVPSPFSLSSGDDMSFPERVPN--LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred cccCcccCccccccCcHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 3444333211 22333332221 111111111111100000011111111 12223334444444333
Q ss_pred chhHHHHHHhhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCC--CeEEEEeeCCcc---cCCHHHHHHHH
Q 047833 227 DKIGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPY--TSVLYVSFGSQN---TIATSQMMQLA 301 (473)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~V~vs~GS~~---~~~~~~~~~~~ 301 (473)
+.. +....+++.+|||+...... .....+.+|++..+. .++|||||||+. .++.++..+++
T Consensus 237 ~~~-----~~~~~~~v~~IG~l~~~~~~---------~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~ 302 (496)
T KOG1192|consen 237 DFE-----PRPLLPKVIPIGPLHVKDSK---------QKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELA 302 (496)
T ss_pred CCC-----CCCCCCCceEECcEEecCcc---------ccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHH
Confidence 321 23346899999999987411 111145566665544 389999999998 68999999999
Q ss_pred HHHHhC-CCceEEEECCCCCC-Cccc-cccccCCcEEEecccChHHh-hccCCcceeEeccCcchHHHHHhhCCcEEecc
Q 047833 302 MALEAS-GKNFIWVVRPPIGF-DINS-EIKCSGQGLVVHKWAPQVEI-LSHRSVSVFLSHCGWNSVLEALSHGVPIIGWP 377 (473)
Q Consensus 302 ~al~~~-~~~~i~~~~~~~~~-~~~~-~~~~~~~nv~~~~~vp~~~l-l~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P 377 (473)
.+++.. ++.|||+....... .+++ ..+ .++||...+|+||.++ |+|+++++||||||||||+|++++|||||++|
T Consensus 303 ~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~P 381 (496)
T KOG1192|consen 303 KALESLQGVTFLWKYRPDDSIYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVP 381 (496)
T ss_pred HHHHhCCCceEEEEecCCcchhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCC
Confidence 999999 88999999754110 0122 111 3678999999999999 59999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 047833 378 LAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIK 441 (473)
Q Consensus 378 ~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~ 441 (473)
+++||+.||++++++ |.|..+.+ .+++..++.+++.++++++ +|+++|+++++.++
T Consensus 382 lf~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~----~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 382 LFGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENE----EYKEAAKRLSEILR 437 (496)
T ss_pred ccccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcCh----HHHHHHHHHHHHHH
Confidence 999999999999999 66666666 5677767999999999999 99999999999987
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=1.5e-27 Score=229.78 Aligned_cols=324 Identities=15% Similarity=0.161 Sum_probs=208.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
|.||++.++||.||++|.+++|++|++ +||+|.|++...-.+. ...+..++.+..++.. ++.. ...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~-~g~~v~~vg~~~~~e~---~l~~~~g~~~~~~~~~----~l~~------~~~ 66 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKE-DNWDISYIGSHQGIEK---TIIEKENIPYYSISSG----KLRR------YFD 66 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHh-CCCEEEEEECCCcccc---ccCcccCCcEEEEecc----CcCC------Cch
Confidence 448999999999999999999999999 9999999996664321 1111156777766621 2211 011
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHHhCCceEEEecchHHHHHHHhhhhccC
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNL 162 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
...+ .....+....-....++++. +||+|++...+. .+..+|..+++|+++....
T Consensus 67 ~~~~-~~~~~~~~~~~~~~~i~~~~-------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n--------------- 123 (352)
T PRK12446 67 LKNI-KDPFLVMKGVMDAYVRIRKL-------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD--------------- 123 (352)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhc-------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCC---------------
Confidence 1111 11111222333445778888 999999986444 3568999999999885321
Q ss_pred CCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcC-CC
Q 047833 163 PHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFG-RS 241 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 241 (473)
..+++.. +.+.++.+ .+..++++- ...++ .+
T Consensus 124 ----------~~~g~~n-----------------------r~~~~~a~-------~v~~~f~~~--------~~~~~~~k 155 (352)
T PRK12446 124 ----------MTPGLAN-----------------------KIALRFAS-------KIFVTFEEA--------AKHLPKEK 155 (352)
T ss_pred ----------CCccHHH-----------------------HHHHHhhC-------EEEEEccch--------hhhCCCCC
Confidence 1121111 11111111 112222211 11222 46
Q ss_pred eEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCH-HHHHHHHHHHHhCCCceEEEECCCCC
Q 047833 242 VWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAT-SQMMQLAMALEASGKNFIWVVRPPIG 320 (473)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~ 320 (473)
+.++|+...+.-. ....+...+.+...+++++|+|..||.+...- +.+..++..+.. +.++++.+|.+.
T Consensus 156 ~~~tG~Pvr~~~~--------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~- 225 (352)
T PRK12446 156 VIYTGSPVREEVL--------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN- 225 (352)
T ss_pred eEEECCcCCcccc--------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch-
Confidence 7899987655410 11122222334434557899999999987443 445555555532 489999998651
Q ss_pred CCccccccccCCcEEEeccc-C-hHHhhccCCcceeEeccCcchHHHHHhhCCcEEecccc-----ccchhhHHHHHHhh
Q 047833 321 FDINSEIKCSGQGLVVHKWA-P-QVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLA-----AEQFYNSKLLEEEI 393 (473)
Q Consensus 321 ~~~~~~~~~~~~nv~~~~~v-p-~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~-----~DQ~~nA~~v~~~l 393 (473)
.+..... -.++.+.+|+ + -.+++++++ ++|||||.+|++|++++|+|+|++|+. .||..||+.+++.
T Consensus 226 --~~~~~~~-~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~- 299 (352)
T PRK12446 226 --LDDSLQN-KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ- 299 (352)
T ss_pred --HHHHHhh-cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-
Confidence 1110101 1355666787 4 557888888 699999999999999999999999984 4899999999988
Q ss_pred cceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 047833 394 GVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYE 435 (473)
Q Consensus 394 G~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 435 (473)
|+|..+.. .+++++.|.+++.++++|+ + .|++++++
T Consensus 300 g~~~~l~~---~~~~~~~l~~~l~~ll~~~-~--~~~~~~~~ 335 (352)
T PRK12446 300 GYASVLYE---EDVTVNSLIKHVEELSHNN-E--KYKTALKK 335 (352)
T ss_pred CCEEEcch---hcCCHHHHHHHHHHHHcCH-H--HHHHHHHH
Confidence 99999987 7899999999999999886 2 35544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.5e-24 Score=208.27 Aligned_cols=306 Identities=22% Similarity=0.259 Sum_probs=194.5
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFM-AQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 6 ~~il~~~~~-~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
|||++...+ +.||+...++||++| + ||+|+|++.....+.+.. . +....++. +...........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~-----~-~~~~~~~~------~~~~~~~~~~~~ 65 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP-----R-FPVREIPG------LGPIQENGRLDR 65 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc-----c-cCEEEccC------ceEeccCCccch
Confidence 478766655 889999999999999 5 799999998876655544 3 34555542 111111111111
Q ss_pred hhhHHHH---HHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 047833 85 YHLVSKL---IEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVN 161 (473)
Q Consensus 85 ~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (473)
....... ............+++++. +||+||+|.. +.+..+|+..|+|++.+........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~--------- 128 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLREF-------RPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH--------- 128 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhc-------CCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc---------
Confidence 1111111 122334445556667777 9999999954 4467899999999999865432110
Q ss_pred CCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhcc--ccCCcEEEEcCccccchhHHHHHHhhcC
Q 047833 162 LPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQ--WMNADGILVNTVEELDKIGLMYFKRKFG 239 (473)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (473)
+... .... ......+.+.... ...+...+..++. .. ....
T Consensus 129 -------------~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~ 170 (318)
T PF13528_consen 129 -------------PNFW----LPWD------------QDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPF 170 (318)
T ss_pred -------------ccCC----cchh------------hhHHHHHHHhhhhccCCcccceecCCcc-cc--------cccc
Confidence 0000 0000 0111112222111 2222223333322 10 1111
Q ss_pred CCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCC-CceEEEECCC
Q 047833 240 RSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASG-KNFIWVVRPP 318 (473)
Q Consensus 240 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~ 318 (473)
.+..++||+....... .. ..+++.|+|++|..... .++++++..+ +++++. |..
T Consensus 171 ~~~~~~~p~~~~~~~~----------------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~ 225 (318)
T PF13528_consen 171 FRVPFVGPIIRPEIRE----------------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN 225 (318)
T ss_pred ccccccCchhcccccc----------------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC
Confidence 3566788877654110 00 11355799999987643 5667777765 677766 544
Q ss_pred CCCCccccccccCCcEEEeccc--ChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccc--cccchhhHHHHHHhhc
Q 047833 319 IGFDINSEIKCSGQGLVVHKWA--PQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPL--AAEQFYNSKLLEEEIG 394 (473)
Q Consensus 319 ~~~~~~~~~~~~~~nv~~~~~v--p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~--~~DQ~~nA~~v~~~lG 394 (473)
.....++|+.+.++. ...++++.++ ++|||||+||++|++++|+|+|++|. ..||..||+++++. |
T Consensus 226 -------~~~~~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G 295 (318)
T PF13528_consen 226 -------AADPRPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-G 295 (318)
T ss_pred -------cccccCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-C
Confidence 122337899998876 4677898877 69999999999999999999999999 78999999999977 9
Q ss_pred ceEEEecCCCCccCHHHHHHHHHHH
Q 047833 395 VCVEVARGKSSEVLKKDIAAKIELV 419 (473)
Q Consensus 395 ~g~~l~~~~~~~~~~~~l~~~i~~l 419 (473)
+|+.++. .+++++.|+++|+++
T Consensus 296 ~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 296 LGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred CeEEccc---ccCCHHHHHHHHhcC
Confidence 9999987 899999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5e-24 Score=202.63 Aligned_cols=326 Identities=21% Similarity=0.201 Sum_probs=207.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCc-EEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKY-TITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
+|+++.+++.||+.|.++|+.+|.+ +|+ +|.++.+....+...... .++.+..++.. ++... . ..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~-~g~~~v~~~~~~~~~e~~l~~~---~~~~~~~I~~~----~~~~~----~--~~ 67 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAK-RGWEQVIVLGTGDGLEAFLVKQ---YGIEFELIPSG----GLRRK----G--SL 67 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHh-hCccEEEEecccccceeeeccc---cCceEEEEecc----ccccc----C--cH
Confidence 6899999999999999999999999 999 588886655443322211 56677766632 22211 0 00
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHHhCCceEEEecchHHHHHHHhhhhccCC
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLP 163 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 163 (473)
..+... ........+.++++++. +||+|++...++ .+..+|..+|||.++.-
T Consensus 68 ~~~~~~-~~~~~~~~~a~~il~~~-------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE------------------ 121 (357)
T COG0707 68 KLLKAP-FKLLKGVLQARKILKKL-------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE------------------ 121 (357)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHc-------CCCEEEecCCccccHHHHHHHhCCCCEEEEe------------------
Confidence 011111 12234455668899999 999999975545 45588899999999942
Q ss_pred CCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCCeE
Q 047833 164 HRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRSVW 243 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (473)
+...+++.. +++.+.. .....+++..+ . ..-+.++.
T Consensus 122 -------qn~~~G~an-----------------------k~~~~~a-------~~V~~~f~~~~-~------~~~~~~~~ 157 (357)
T COG0707 122 -------QNAVPGLAN-----------------------KILSKFA-------KKVASAFPKLE-A------GVKPENVV 157 (357)
T ss_pred -------cCCCcchhH-----------------------HHhHHhh-------ceeeecccccc-c------cCCCCceE
Confidence 222333321 0011111 11122222111 0 00013577
Q ss_pred EecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCC-HHHHHHHHHHHHhCCCceEEEECCCCCCC
Q 047833 244 PIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIA-TSQMMQLAMALEASGKNFIWVVRPPIGFD 322 (473)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (473)
.+|-.....- ...+..-..+... .++++|+|..||.+... .+.+......+.. +.++++.+|.+.
T Consensus 158 ~tG~Pvr~~~---------~~~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--- 223 (357)
T COG0707 158 VTGIPVRPEF---------EELPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--- 223 (357)
T ss_pred EecCcccHHh---------hccchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---
Confidence 7774333320 0112222222212 25789999999998744 3444444444444 688899997651
Q ss_pred ccc-cccccCCc-EEEecccCh-HHhhccCCcceeEeccCcchHHHHHhhCCcEEeccc-c---ccchhhHHHHHHhhcc
Q 047833 323 INS-EIKCSGQG-LVVHKWAPQ-VEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPL-A---AEQFYNSKLLEEEIGV 395 (473)
Q Consensus 323 ~~~-~~~~~~~n-v~~~~~vp~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~-~---~DQ~~nA~~v~~~lG~ 395 (473)
.+. .......+ +.+.+|.++ ..+++.++ ++||++|.+|+.|++.+|+|+|.+|. . .||..||+.++++ |.
T Consensus 224 ~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-ga 300 (357)
T COG0707 224 LEELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GA 300 (357)
T ss_pred HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CC
Confidence 122 22222233 888888874 55666666 69999999999999999999999998 2 4899999999999 99
Q ss_pred eEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 047833 396 CVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEV 436 (473)
Q Consensus 396 g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l 436 (473)
|..++. .+++.+.|.+.|.+++++++..+.++++|+++
T Consensus 301 a~~i~~---~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 301 ALVIRQ---SELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred EEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998 88999999999999999974444555555544
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=3.5e-22 Score=191.40 Aligned_cols=303 Identities=16% Similarity=0.135 Sum_probs=172.0
Q ss_pred EEEEEcCCCc-cCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCce-EEecCCCCCCCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQ-GHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSIN-LLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 7 ~il~~~~~~~-GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
||++...++. ||+.|.++||++|++ ||+|+|++.......+.. .++. +...|. +....... ...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~~~~~~-----~~~~~~~~~p~------~~~~~~~~-~~~ 66 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGRSKNYISK-----YGFKVFETFPG------IKLKGEDG-KVN 66 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHHHhhhh-----hcCcceeccCC------ceEeecCC-cCc
Confidence 5777666655 999999999999986 999999998875555555 3333 333331 11100000 000
Q ss_pred hhhHHHHHH--HH-HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 047833 85 YHLVSKLIE--AT-LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVN 161 (473)
Q Consensus 85 ~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (473)
....+.. .+ ........++++++ +||+||+| +.+.+..+|+.+|||++.+......
T Consensus 67 --~~~~l~~~~~~~~~~~~~~~~~l~~~-------~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~----------- 125 (321)
T TIGR00661 67 --IVKTLRNKEYSPKKAIRREINIIREY-------NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT----------- 125 (321)
T ss_pred --HHHHHHhhccccHHHHHHHHHHHHhc-------CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh-----------
Confidence 1111110 11 12334456778888 99999999 4455788999999999987542110
Q ss_pred CCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHH-HHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCC
Q 047833 162 LPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFS-AILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGR 240 (473)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (473)
..+.. . + .. .... ..+... ...........+.... ...|+
T Consensus 126 -----------~~~~~-----~--~-~~---------~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~p~ 166 (321)
T TIGR00661 126 -----------RYPLK-----T--D-LI---------VYPTMAALRIF---NERCERFIVPDYPFPY--------TICPK 166 (321)
T ss_pred -----------cCCcc-----c--c-hh---------HHHHHHHHHHh---ccccceEeeecCCCCC--------CCCcc
Confidence 00100 0 0 00 0000 111111 1111222222221111 00011
Q ss_pred CeE-EecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCC-ceEEEECCC
Q 047833 241 SVW-PIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGK-NFIWVVRPP 318 (473)
Q Consensus 241 ~~~-~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~ 318 (473)
... .-+|.. ......+... +++.|+|.+|+... ..+++++.+.+. .+|+ .+..
T Consensus 167 ~~~~~~~~~~----------------~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i~-~~~~ 221 (321)
T TIGR00661 167 IIKNMEGPLI----------------RYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIANVKFVC-YSYE 221 (321)
T ss_pred ccccCCCccc----------------chhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCCeEEEE-eCCC
Confidence 000 001111 1112222211 24567788877542 234666766553 3332 2211
Q ss_pred CCCCccccccccCCcEEEecccC--hHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccc--cchhhHHHHHHhhc
Q 047833 319 IGFDINSEIKCSGQGLVVHKWAP--QVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEIG 394 (473)
Q Consensus 319 ~~~~~~~~~~~~~~nv~~~~~vp--~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~--DQ~~nA~~v~~~lG 394 (473)
......++|+.+.+|.| ..++|+.++ +||||||++|++|++++|+|++++|... ||..||+.++++ |
T Consensus 222 ------~~~~~~~~~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g 292 (321)
T TIGR00661 222 ------VAKNSYNENVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-G 292 (321)
T ss_pred ------CCccccCCCEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-C
Confidence 11112357999989997 456677766 6999999999999999999999999954 899999999988 9
Q ss_pred ceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 395 VCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 395 ~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+|+.+.. .++ ++.+++.++++|+
T Consensus 293 ~~~~l~~---~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 293 CGIALEY---KEL---RLLEAILDIRNMK 315 (321)
T ss_pred CEEEcCh---hhH---HHHHHHHhccccc
Confidence 9999987 555 6666777777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=2.1e-19 Score=175.48 Aligned_cols=345 Identities=17% Similarity=0.155 Sum_probs=202.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc--hhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN--LRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDS 82 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (473)
|+||+|+..+..||....+.|+++|.+ +||+|++++.+.. .+.++. .++++..++.. ++.. .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~-~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~----~~~~------~ 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKK-RGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSG----GLRR------K 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHh-CCCEEEEEECCCchhhhcccc-----CCCcEEEEecc----CcCC------C
Confidence 468999999889999999999999999 9999999987652 112222 45666666532 1110 0
Q ss_pred CChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCc--chHHHHHHHhCCceEEEecchHHHHHHHhhhhc
Q 047833 83 VPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFF--GWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWV 160 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 160 (473)
.....+.... ........+.+++++. +||+|++.... ..+..+++..++|++.....
T Consensus 65 ~~~~~l~~~~-~~~~~~~~~~~~ik~~-------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~------------- 123 (357)
T PRK00726 65 GSLANLKAPF-KLLKGVLQARKILKRF-------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN------------- 123 (357)
T ss_pred ChHHHHHHHH-HHHHHHHHHHHHHHhc-------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-------------
Confidence 0000111111 1233344567778887 89999999632 23456778889999864110
Q ss_pred cCCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCC
Q 047833 161 NLPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGR 240 (473)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (473)
..+. ...+++.+ .++.++..+...+ . ..-+.
T Consensus 124 ------------~~~~-----------------------~~~r~~~~------~~d~ii~~~~~~~-----~---~~~~~ 154 (357)
T PRK00726 124 ------------AVPG-----------------------LANKLLAR------FAKKVATAFPGAF-----P---EFFKP 154 (357)
T ss_pred ------------CCcc-----------------------HHHHHHHH------HhchheECchhhh-----h---ccCCC
Confidence 0000 00011111 1111222211111 0 01125
Q ss_pred CeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCC--ceEEEECCC
Q 047833 241 SVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGK--NFIWVVRPP 318 (473)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~ 318 (473)
+++++|........ .... ...-+...++.++|++..|+... ......+.+++.+... .+++.+|..
T Consensus 155 ~i~vi~n~v~~~~~---------~~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g 222 (357)
T PRK00726 155 KAVVTGNPVREEIL---------ALAA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG 222 (357)
T ss_pred CEEEECCCCChHhh---------cccc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC
Confidence 77888765433210 0000 01112222335567766665432 1222223355554332 455666644
Q ss_pred CCCCccccccccCCcEEEeccc-ChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccc----cccchhhHHHHHHhh
Q 047833 319 IGFDINSEIKCSGQGLVVHKWA-PQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLLEEEI 393 (473)
Q Consensus 319 ~~~~~~~~~~~~~~nv~~~~~v-p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~----~~DQ~~nA~~v~~~l 393 (473)
. ...........-++.+.+|+ +..++++.++ ++|+|+|.++++||+++|+|+|++|. ..||..|+..+.+.
T Consensus 223 ~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~- 298 (357)
T PRK00726 223 D-LEEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA- 298 (357)
T ss_pred c-HHHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-
Confidence 1 11101111122347888998 4678898888 59999999999999999999999997 46899999999988
Q ss_pred cceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 394 GVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 394 G~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
|.|..++. .+++.+.|+++|.++++|+ +++++..+-+.+. .+.++..+.++.+++.++
T Consensus 299 ~~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 299 GAALLIPQ---SDLTPEKLAEKLLELLSDP----ERLEAMAEAARAL--------GKPDAAERLADLIEELAR 356 (357)
T ss_pred CCEEEEEc---ccCCHHHHHHHHHHHHcCH----HHHHHHHHHHHhc--------CCcCHHHHHHHHHHHHhh
Confidence 99999987 6788999999999999998 4554433333333 334446777777666543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=9.7e-18 Score=163.32 Aligned_cols=326 Identities=20% Similarity=0.184 Sum_probs=191.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYH 86 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 86 (473)
+|++.+.++.||+...+.|++.|.+ +||+|++++....... ..... .++++..++.. ++.. .....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~-~G~ev~v~~~~~~~~~-~~~~~--~~~~~~~~~~~----~~~~------~~~~~ 66 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRE-RGAEVLFLGTKRGLEA-RLVPK--AGIPLHTIPVG----GLRR------KGSLK 66 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHh-CCCEEEEEECCCcchh-hcccc--cCCceEEEEec----CcCC------CChHH
Confidence 5899999999999999999999999 9999999986542111 11000 35666666532 1110 00011
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCc--chHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCC
Q 047833 87 LVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFF--GWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLPH 164 (473)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~ 164 (473)
.+..+.. .......+.+++++. +||+|++.... ..+..+|...|+|++.....
T Consensus 67 ~~~~~~~-~~~~~~~~~~~i~~~-------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~----------------- 121 (350)
T cd03785 67 KLKAPFK-LLKGVLQARKILKKF-------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN----------------- 121 (350)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhc-------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-----------------
Confidence 1111111 123334566778887 99999987532 34557788899999863110
Q ss_pred CCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCCeEE
Q 047833 165 RNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRSVWP 244 (473)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 244 (473)
..++ ...+++ ....+.++..+....+. .-+.++.+
T Consensus 122 --------~~~~-----------------------~~~~~~------~~~~~~vi~~s~~~~~~--------~~~~~~~~ 156 (350)
T cd03785 122 --------AVPG-----------------------LANRLL------ARFADRVALSFPETAKY--------FPKDKAVV 156 (350)
T ss_pred --------CCcc-----------------------HHHHHH------HHhhCEEEEcchhhhhc--------CCCCcEEE
Confidence 0000 000011 11123344433221110 11256777
Q ss_pred ecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCC-HHHHHHHHHHHHhCCCceEEEECCCCCCCc
Q 047833 245 IGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIA-TSQMMQLAMALEASGKNFIWVVRPPIGFDI 323 (473)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 323 (473)
+|........ .. ... ...+...+++++|++..|+..... .+.+...+..+...+..+++.+|.. ....
T Consensus 157 i~n~v~~~~~--------~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~~ 225 (350)
T cd03785 157 TGNPVREEIL--------AL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-DLEE 225 (350)
T ss_pred ECCCCchHHh--------hh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-cHHH
Confidence 7764432200 00 111 222333334556666666654322 1223333444443445566677654 1111
Q ss_pred -cccccccCCcEEEeccc-ChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccc----cccchhhHHHHHHhhcceE
Q 047833 324 -NSEIKCSGQGLVVHKWA-PQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLLEEEIGVCV 397 (473)
Q Consensus 324 -~~~~~~~~~nv~~~~~v-p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~----~~DQ~~nA~~v~~~lG~g~ 397 (473)
........+|+.+.+|+ ....+++.++ ++|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+. |.|.
T Consensus 226 l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~ 302 (350)
T cd03785 226 VKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAV 302 (350)
T ss_pred HHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEE
Confidence 01111124689999998 5677888877 59999999999999999999999986 45788999999988 9999
Q ss_pred EEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHH
Q 047833 398 EVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNA 433 (473)
Q Consensus 398 ~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a 433 (473)
.++. .+.+.++|.++|++++++++..+.+.+++
T Consensus 303 ~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 303 LIPQ---EELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred EEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9987 55789999999999999873333344443
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.78 E-value=2.7e-17 Score=160.98 Aligned_cols=352 Identities=14% Similarity=0.079 Sum_probs=207.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
-.||++..+++.||++|. +|+++|++ +|++|.|++.... .+++.+.+ ..+++..++.. ++.
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~-~~~~~~~~g~gg~--~m~~~g~~-~~~~~~~l~v~----G~~---------- 65 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKE-HYPNARFIGVAGP--RMAAEGCE-VLYSMEELSVM----GLR---------- 65 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHh-cCCCcEEEEEccH--HHHhCcCc-cccChHHhhhc----cHH----------
Confidence 358999999999999999 99999999 9999999986532 34443322 22333333321 111
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCC-cch--HHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMF-FGW--CKEIAQEYGIFHAIFIGGGGFGFACYYSLWVN 161 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~-~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (473)
.. ......+......+.+++++. +||+||.-.. .+. ...+|+.+|||++...+-.
T Consensus 66 -~~-l~~~~~~~~~~~~~~~~l~~~-------kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~------------- 123 (385)
T TIGR00215 66 -EV-LGRLGRLLKIRKEVVQLAKQA-------KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQ------------- 123 (385)
T ss_pred -HH-HHHHHHHHHHHHHHHHHHHhc-------CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCc-------------
Confidence 01 112222233444777888888 9999988643 222 2248899999999753100
Q ss_pred CCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCC
Q 047833 162 LPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRS 241 (473)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 241 (473)
.+.+.. .+ .+.+.+..+. + ..+++ .+...+ . ..+.+
T Consensus 124 ------------~waw~~---~~-----------------~r~l~~~~d~------v-~~~~~-~e~~~~---~-~~g~~ 159 (385)
T TIGR00215 124 ------------VWAWRK---WR-----------------AKKIEKATDF------L-LAILP-FEKAFY---Q-KKNVP 159 (385)
T ss_pred ------------HhhcCc---ch-----------------HHHHHHHHhH------h-hccCC-CcHHHH---H-hcCCC
Confidence 011111 00 1111111111 1 11121 122221 1 22245
Q ss_pred eEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHh-----CCCceEEEEC
Q 047833 242 VWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEA-----SGKNFIWVVR 316 (473)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~ 316 (473)
..++|....+... ..........+-+.-.+++++|.+-.||....-......+++++.. .+.++++...
T Consensus 160 ~~~vGnPv~~~~~------~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 160 CRFVGHPLLDAIP------LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred EEEECCchhhhcc------ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 6678854432200 0001222333333334456788888888764223334445544433 2345655543
Q ss_pred CCCCCC-ccccccc--cCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEec----cccc---------
Q 047833 317 PPIGFD-INSEIKC--SGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGW----PLAA--------- 380 (473)
Q Consensus 317 ~~~~~~-~~~~~~~--~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~----P~~~--------- 380 (473)
...+.. .+..... ....+.+..+ ....+++.++ ++|+-+|..|+ |++++|+|+|++ |+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~ 309 (385)
T TIGR00215 234 NFKRRLQFEQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKT 309 (385)
T ss_pred CchhHHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcC
Confidence 221000 0010001 1223433322 3345777777 59999999888 999999999999 8732
Q ss_pred cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC----hhhHHHHHHHHHHHHHHHHhcccccccCCcHHH
Q 047833 381 EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET----EKGIELRKNAYEVREIIKNAFKNEENFQGSSVK 456 (473)
Q Consensus 381 DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~----~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 456 (473)
.|..|+..+.+. ++...+.. .+.+++.|.+.+.++|+|+ +..+.+++...++.+++ .+.|.+.+
T Consensus 310 ~~~~~~nil~~~-~~~pel~q---~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~~ 377 (385)
T TIGR00215 310 DYISLPNILANR-LLVPELLQ---EECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI--------YCNADSER 377 (385)
T ss_pred CeeeccHHhcCC-ccchhhcC---CCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh--------cCCCHHHH
Confidence 388899999988 99999987 7899999999999999998 67777888888888877 55676788
Q ss_pred HHHHHHH
Q 047833 457 AMNQFLN 463 (473)
Q Consensus 457 ~~~~~~~ 463 (473)
+.+.+++
T Consensus 378 ~a~~i~~ 384 (385)
T TIGR00215 378 AAQAVLE 384 (385)
T ss_pred HHHHHhh
Confidence 8876654
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=5.1e-16 Score=151.06 Aligned_cols=309 Identities=19% Similarity=0.235 Sum_probs=171.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh-h-hhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLR-K-LKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~-~-v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
||+|++++..||+...+.||++|.+ +||+|++++.+.... . ... .++++..++.. .... . ..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~-~g~eV~vv~~~~~~~~~~~~~-----~g~~~~~i~~~----~~~~----~--~~ 65 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIK-RGVEVLWLGTKRGLEKRLVPK-----AGIEFYFIPVG----GLRR----K--GS 65 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHh-CCCEEEEEeCCCcchhccccc-----CCCceEEEecc----CcCC----C--Ch
Confidence 7999999999999988899999999 999999998644211 1 111 45666666532 1000 0 01
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHHhCCceEEEecchHHHHHHHhhhhccC
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNL 162 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
...+...... ......+.+++++. +||+|++..... .+..+++.+++|++......
T Consensus 66 ~~~l~~~~~~-~~~~~~l~~~i~~~-------~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~-------------- 123 (348)
T TIGR01133 66 FRLIKTPLKL-LKAVFQARRILKKF-------KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA-------------- 123 (348)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhc-------CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC--------------
Confidence 0111111111 22334567778888 999999985433 34457888899997431000
Q ss_pred CCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCCe
Q 047833 163 PHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRSV 242 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 242 (473)
.+ ....+++. +.++.++..+.. . ...+ ..
T Consensus 124 -----------~~-----------------------~~~~~~~~------~~~d~ii~~~~~-~--------~~~~--~~ 152 (348)
T TIGR01133 124 -----------VP-----------------------GLTNKLLS------RFAKKVLISFPG-A--------KDHF--EA 152 (348)
T ss_pred -----------Cc-----------------------cHHHHHHH------HHhCeeEECchh-H--------hhcC--Cc
Confidence 00 00001111 122333333221 1 1111 12
Q ss_pred EEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCC-HHHHHHHHHHHHhCCCceEEEECCCCCC
Q 047833 243 WPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIA-TSQMMQLAMALEASGKNFIWVVRPPIGF 321 (473)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~ 321 (473)
.++|.-...... ..+.. ...+...+++++|.+..|+..... .+.+...+..+...+.++++..|..
T Consensus 153 ~~i~n~v~~~~~---------~~~~~-~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~--- 219 (348)
T TIGR01133 153 VLVGNPVRQEIR---------SLPVP-RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKN--- 219 (348)
T ss_pred eEEcCCcCHHHh---------cccch-hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcc---
Confidence 445433221100 00000 112222233445555445544211 1112223333333456676656533
Q ss_pred Cccc-cccccCCc-EEEeccc--ChHHhhccCCcceeEeccCcchHHHHHhhCCcEEecccc---ccchhhHHHHHHhhc
Q 047833 322 DINS-EIKCSGQG-LVVHKWA--PQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLA---AEQFYNSKLLEEEIG 394 (473)
Q Consensus 322 ~~~~-~~~~~~~n-v~~~~~v--p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~---~DQ~~nA~~v~~~lG 394 (473)
..+. .......+ ..++.+. +...+++.++ ++|+++|.+|+.||+++|+|+|++|.. .+|..|+..+++. |
T Consensus 220 ~~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~ 296 (348)
T TIGR01133 220 DLEKVKNVYQELGIEAIVTFIDENMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-G 296 (348)
T ss_pred hHHHHHHHHhhCCceEEecCcccCHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-C
Confidence 1111 11111111 1122333 5677888888 599999988999999999999999873 4688899999977 9
Q ss_pred ceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 395 VCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 395 ~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
.|..++. .+.+.+.|.++|+++++|+
T Consensus 297 ~G~~~~~---~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 297 AGLVIRQ---KELLPEKLLEALLKLLLDP 322 (348)
T ss_pred CEEEEec---ccCCHHHHHHHHHHHHcCH
Confidence 9998877 6678999999999999998
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.75 E-value=1.4e-15 Score=137.87 Aligned_cols=332 Identities=15% Similarity=0.140 Sum_probs=201.3
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhccCCCC-CCceEEecCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFM--AQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKSSVPQN-SSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 5 ~~~il~~~~~--~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
++||+|++.- +.||+-..+.||.+|.++ +|.+|++++..... .+.+. .+++|+.+|.-.. ...+....
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~-----~~F~~~~gVd~V~LPsl~k---~~~G~~~~ 80 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPA-----GGFPGPAGVDFVKLPSLIK---GDNGEYGL 80 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCcc-----CCCCCcccCceEecCceEe---cCCCceee
Confidence 5699999985 679999999999999996 69999999987742 33332 7899999994311 11221111
Q ss_pred CCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHH------HHHHHh--CCceEEEecchHHHH
Q 047833 81 DSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCK------EIAQEY--GIFHAIFIGGGGFGF 152 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~------~~A~~~--giP~v~~~~~~~~~~ 152 (473)
.+.-. ..-+..+....-+....+.. +||++|+|.+ +.|+ .+++.. +-+++..
T Consensus 81 ~d~~~----~l~e~~~~Rs~lil~t~~~f-------kPDi~IVd~~-P~Glr~EL~ptL~yl~~~~t~~vL~-------- 140 (400)
T COG4671 81 VDLDG----DLEETKKLRSQLILSTAETF-------KPDIFIVDKF-PFGLRFELLPTLEYLKTTGTRLVLG-------- 140 (400)
T ss_pred eecCC----CHHHHHHHHHHHHHHHHHhc-------CCCEEEEecc-ccchhhhhhHHHHHHhhcCCcceee--------
Confidence 11110 01222233344556677777 9999999965 3331 122111 1001110
Q ss_pred HHHhhhhccCCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhH-H
Q 047833 153 ACYYSLWVNLPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIG-L 231 (473)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 231 (473)
+ ...++...............+.+.++++. +++-..+++..+. .
T Consensus 141 ------------------------l-----r~i~D~p~~~~~~w~~~~~~~~I~r~yD~------V~v~GdP~f~d~~~~ 185 (400)
T COG4671 141 ------------------------L-----RSIRDIPQELEADWRRAETVRLINRFYDL------VLVYGDPDFYDPLTE 185 (400)
T ss_pred ------------------------h-----HhhhhchhhhccchhhhHHHHHHHHhheE------EEEecCccccChhhc
Confidence 0 01122222222222234445555555542 3333333322110 0
Q ss_pred HHHHhhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHh-CCCc
Q 047833 232 MYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEA-SGKN 310 (473)
Q Consensus 232 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~ 310 (473)
-.+....-..++|+|.+ ..+... .+.+. .. .+.+..|+||-|.... ..+.+...+.|-.. .+.+
T Consensus 186 ~~~~~~i~~k~~ytG~v-q~~~~~-------~~~p~-----~~-~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~ 250 (400)
T COG4671 186 FPFAPAIRAKMRYTGFV-QRSLPH-------LPLPP-----HE-APEGFDILVSVGGGAD-GAELIETALAAAQLLAGLN 250 (400)
T ss_pred CCccHhhhhheeEeEEe-eccCcC-------CCCCC-----cC-CCccceEEEecCCChh-hHHHHHHHHHHhhhCCCCC
Confidence 00112223678999999 221000 00110 11 1334478888886543 45666666666544 4444
Q ss_pred --eEEEECCCCCCCccc----cccccC--CcEEEecccC-hHHhhccCCcceeEeccCcchHHHHHhhCCcEEecccc--
Q 047833 311 --FIWVVRPPIGFDINS----EIKCSG--QGLVVHKWAP-QVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLA-- 379 (473)
Q Consensus 311 --~i~~~~~~~~~~~~~----~~~~~~--~nv~~~~~vp-~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~-- 379 (473)
.++++|+. -|.. .....+ +++.+..|-. ...++..++ .+|+-||+||++|-|++|+|.|++|..
T Consensus 251 ~~~~ivtGP~---MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLivPr~~p 325 (400)
T COG4671 251 HKWLIVTGPF---MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALIVPRAAP 325 (400)
T ss_pred cceEEEeCCC---CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceEEeccCCC
Confidence 78888754 2322 112233 7899999876 567777766 699999999999999999999999984
Q ss_pred -ccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 380 -AEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 380 -~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
-+|-.-|.|+++. |+.-.+.+ .+++++.|+++|...++-|
T Consensus 326 ~eEQliRA~Rl~~L-GL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 326 REEQLIRAQRLEEL-GLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred cHHHHHHHHHHHhc-CcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 4999999999955 99999998 8999999999999999843
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.69 E-value=3.5e-15 Score=139.31 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=77.4
Q ss_pred CeEEEEeeCCcccCCHHHHHHHHHHHHh--CCCceEEEECCCCCCCccc--cccccCCcEEEecccChH-HhhccCCcce
Q 047833 279 TSVLYVSFGSQNTIATSQMMQLAMALEA--SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQV-EILSHRSVSV 353 (473)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~-~ll~~~~v~~ 353 (473)
.+.|+|++|...... ....+++++.+ .+.++.+++|+.. ...+. .......|+.+..++++. .+++.++ +
T Consensus 170 ~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~-~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aD--l 244 (279)
T TIGR03590 170 LRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN-PNLDELKKFAKEYPNIILFIDVENMAELMNEAD--L 244 (279)
T ss_pred cCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC-cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCC--E
Confidence 357899999665422 44556666665 3567888998652 12111 111224589999999975 8898888 5
Q ss_pred eEeccCcchHHHHHhhCCcEEeccccccchhhHHH
Q 047833 354 FLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKL 388 (473)
Q Consensus 354 ~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~ 388 (473)
+||+|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 245 ~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 245 AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 9999999999999999999999999975
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.68 E-value=6e-15 Score=145.33 Aligned_cols=354 Identities=14% Similarity=0.091 Sum_probs=183.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
++||+|+..++.||++|.+ ++++|++ +++++.+++.... .+++.+.+ .++.+..++.. ++
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~-~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~----g~----------- 60 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKA-RAPNLEFVGVGGP--RMQAAGCE-SLFDMEELAVM----GL----------- 60 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHh-cCCCcEEEEEccH--HHHhCCCc-cccCHHHhhhc----cH-----------
Confidence 3589999999999999999 9999999 8888877764332 23332221 22222222211 10
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCC-cchH--HHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMF-FGWC--KEIAQEYGIFHAIFIGGGGFGFACYYSLWVN 161 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~-~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (473)
.. ..............+.++++++ +||+|++-.. ..+. ...|...|||++.......
T Consensus 61 ~~-~~~~~~~~~~~~~~~~~~l~~~-------kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~------------ 120 (380)
T PRK00025 61 VE-VLPRLPRLLKIRRRLKRRLLAE-------PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV------------ 120 (380)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHc-------CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch------------
Confidence 01 1122222334556678888988 9999887432 2233 3446778999887521100
Q ss_pred CCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCC
Q 047833 162 LPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRS 241 (473)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 241 (473)
+.+ . ....+.+ ...++.++..+.. +... +. ..+..
T Consensus 121 ---------------------~~~--~----------~~~~~~~------~~~~d~i~~~~~~--~~~~---~~-~~g~~ 155 (380)
T PRK00025 121 ---------------------WAW--R----------QGRAFKI------AKATDHVLALFPF--EAAF---YD-KLGVP 155 (380)
T ss_pred ---------------------hhc--C----------chHHHHH------HHHHhhheeCCcc--CHHH---HH-hcCCC
Confidence 000 0 0000001 1111222222211 1121 11 12234
Q ss_pred eEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHh-----CCCceEEEEC
Q 047833 242 VWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEA-----SGKNFIWVVR 316 (473)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~ 316 (473)
+.++|....+... .........+.+...+++++|++..||...........+++++.. .+.+++++.+
T Consensus 156 ~~~~G~p~~~~~~-------~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~ 228 (380)
T PRK00025 156 VTFVGHPLADAIP-------LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLV 228 (380)
T ss_pred eEEECcCHHHhcc-------cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 6777743322100 001122333334333345566666676543222223344444432 2456777764
Q ss_pred CCCCCC-cccccccc-CCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccc--------cchhh-
Q 047833 317 PPIGFD-INSEIKCS-GQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAA--------EQFYN- 385 (473)
Q Consensus 317 ~~~~~~-~~~~~~~~-~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~--------DQ~~n- 385 (473)
...... ........ .-++.+.+. .-..+++.++ ++|+.+|.+++ |++.+|+|+|++|-.. +|..|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~ 304 (380)
T PRK00025 229 NPKRREQIEEALAEYAGLEVTLLDG-QKREAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVP 304 (380)
T ss_pred ChhhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCC
Confidence 220000 00001111 123443221 2456777777 59999998887 9999999999985321 22222
Q ss_pred ----HHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHH
Q 047833 386 ----SKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQF 461 (473)
Q Consensus 386 ----A~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 461 (473)
+..+.+. +++..+.. ...++++|.++|.++++|++..++++++++++.+.+ ..|++.+.++.+
T Consensus 305 ~~~l~~~~~~~-~~~~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~---------~~~a~~~~~~~i 371 (380)
T PRK00025 305 YVSLPNLLAGR-ELVPELLQ---EEATPEKLARALLPLLADGARRQALLEGFTELHQQL---------RCGADERAAQAV 371 (380)
T ss_pred eeehHHHhcCC-CcchhhcC---CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHH
Confidence 2333333 33444444 577899999999999999955455556665555544 134567777777
Q ss_pred HHHHHh
Q 047833 462 LNAASM 467 (473)
Q Consensus 462 ~~~~~~ 467 (473)
.+.++.
T Consensus 372 ~~~~~~ 377 (380)
T PRK00025 372 LELLKQ 377 (380)
T ss_pred HHHhhh
Confidence 665543
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=7.7e-14 Score=137.39 Aligned_cols=165 Identities=17% Similarity=0.266 Sum_probs=110.0
Q ss_pred CCCeEEEEeeCCcccCCHHHHHHHHHHHHh-CCCceEEEECCCCCCCccc---cccccCCcEEEecccCh-HHhhccCCc
Q 047833 277 PYTSVLYVSFGSQNTIATSQMMQLAMALEA-SGKNFIWVVRPPIGFDINS---EIKCSGQGLVVHKWAPQ-VEILSHRSV 351 (473)
Q Consensus 277 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~---~~~~~~~nv~~~~~vp~-~~ll~~~~v 351 (473)
+++++|++..|+..... .+..+++++.. .+.++++++|.+ +...+. .....++|+.+.+|+++ .++++.++
T Consensus 200 ~~~~~il~~~G~~~~~k--~~~~li~~l~~~~~~~~viv~G~~-~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD- 275 (380)
T PRK13609 200 PNKKILLIMAGAHGVLG--NVKELCQSLMSVPDLQVVVVCGKN-EALKQSLEDLQETNPDALKVFGYVENIDELFRVTS- 275 (380)
T ss_pred CCCcEEEEEcCCCCCCc--CHHHHHHHHhhCCCcEEEEEeCCC-HHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhcc-
Confidence 34567877778775422 23456666654 357888877643 100011 11123468999999986 47888888
Q ss_pred ceeEeccCcchHHHHHhhCCcEEec-cccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHH
Q 047833 352 SVFLSHCGWNSVLEALSHGVPIIGW-PLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELR 430 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~GvP~l~~-P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 430 (473)
++|+.+|..|+.||+++|+|+|+. |..+.+..|+..+++. |.|+... +.++|.++|.++++|++..+.++
T Consensus 276 -~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll~~~~~~~~m~ 346 (380)
T PRK13609 276 -CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALLQDDMKLLQMK 346 (380)
T ss_pred -EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHHCCHHHHHHHH
Confidence 499999988999999999999985 6777788999988877 9887542 46899999999999983333344
Q ss_pred HHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 431 KNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 431 ~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+++++ . ....+..+.++.+++.+.
T Consensus 347 ~~~~~-------~-----~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 347 EAMKS-------L-----YLPEPADHIVDDILAENH 370 (380)
T ss_pred HHHHH-------h-----CCCchHHHHHHHHHHhhh
Confidence 33333 2 223345666666665443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=1.1e-13 Score=136.45 Aligned_cols=166 Identities=11% Similarity=0.150 Sum_probs=111.6
Q ss_pred CCCeEEEEeeCCcccCCHHHHHHHHHHH-Hh-CCCceEEEECCCCCCCccc-c-ccccCCcEEEecccCh-HHhhccCCc
Q 047833 277 PYTSVLYVSFGSQNTIATSQMMQLAMAL-EA-SGKNFIWVVRPPIGFDINS-E-IKCSGQGLVVHKWAPQ-VEILSHRSV 351 (473)
Q Consensus 277 ~~~~~V~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~-~-~~~~~~nv~~~~~vp~-~~ll~~~~v 351 (473)
+++++|++..|+.... ..+..+++++ .. .+.++++++|.+. ...+. . .....+++.+.+|+.+ ..+++.++
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~-~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aD- 275 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSK-ELKRSLTAKFKSNENVLILGYTKHMNEWMASSQ- 275 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCH-HHHHHHHHHhccCCCeEEEeccchHHHHHHhhh-
Confidence 4466888888988631 2233344443 22 3567878876441 10011 1 1112357888899964 46788877
Q ss_pred ceeEeccCcchHHHHHhhCCcEEec-cccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHH
Q 047833 352 SVFLSHCGWNSVLEALSHGVPIIGW-PLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELR 430 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~GvP~l~~-P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 430 (473)
++|+.+|..|+.||+++|+|+|++ |..++|..|+..+++. |+|+... +.+++.++|.++++|++..+.++
T Consensus 276 -l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~~~~~~~~m~ 346 (391)
T PRK13608 276 -LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTNGNEQLTNMI 346 (391)
T ss_pred -EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhcCHHHHHHHH
Confidence 499988888999999999999998 7777778999999988 9997642 57889999999999884444455
Q ss_pred HHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Q 047833 431 KNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASM 467 (473)
Q Consensus 431 ~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (473)
+|++++++ ..+..+.++.+++.+..
T Consensus 347 ~~~~~~~~------------~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 347 STMEQDKI------------KYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHhcC------------CCCHHHHHHHHHHHhhh
Confidence 55444322 23356666666666544
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.56 E-value=2.7e-16 Score=135.79 Aligned_cols=136 Identities=21% Similarity=0.313 Sum_probs=98.9
Q ss_pred EEEEeeCCcccCC-HHHHHHHHHHHHh--CCCceEEEECCCCCCCccc-cccccCCcEEEecccC-hHHhhccCCcceeE
Q 047833 281 VLYVSFGSQNTIA-TSQMMQLAMALEA--SGKNFIWVVRPPIGFDINS-EIKCSGQGLVVHKWAP-QVEILSHRSVSVFL 355 (473)
Q Consensus 281 ~V~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~-~~~~~~~nv~~~~~vp-~~~ll~~~~v~~~I 355 (473)
+|+|+.||..... .+.+..+...+.. ...++++.+|... ..... .......++.+.+|++ ...+++.++ ++|
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~-~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aD--lvI 77 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN-YEELKIKVENFNPNVKVFGFVDNMAELMAAAD--LVI 77 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE-CHHHCCCHCCTTCCCEEECSSSSHHHHHHHHS--EEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc-HHHHHHHHhccCCcEEEEechhhHHHHHHHcC--EEE
Confidence 4899999886421 1222223333333 3578999998651 11111 1111226899999999 889999988 599
Q ss_pred eccCcchHHHHHhhCCcEEeccccc----cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 356 SHCGWNSVLEALSHGVPIIGWPLAA----EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 356 ~HGG~gt~~eal~~GvP~l~~P~~~----DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.. ...+.+.|.++|.++++++
T Consensus 78 s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 78 SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEELLSDP 145 (167)
T ss_dssp ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHCHCCCH
T ss_pred eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHHHHcCc
Confidence 9999999999999999999999988 999999999988 99999988 7777899999999999988
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.47 E-value=2.5e-11 Score=119.44 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=96.2
Q ss_pred hHhhhhcCCCCCeEEEEeeCCcccCCH-HHHHHHHHHHH-----hCCCceEEEECCCCCCCccc-cccccCCcEEEeccc
Q 047833 268 LCKKWLDTKPYTSVLYVSFGSQNTIAT-SQMMQLAMALE-----ASGKNFIWVVRPPIGFDINS-EIKCSGQGLVVHKWA 340 (473)
Q Consensus 268 ~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~-~~~~~~~nv~~~~~v 340 (473)
.+.+-+.-.+++++|++..|+...... ..+..+...+. ..+.++++.+|.+. ..... .......++.+.+|+
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-~~~~~L~~~~~~~~v~~~G~~ 273 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-KLQSKLESRDWKIPVKVRGFV 273 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-HHHHHHHhhcccCCeEEEecc
Confidence 344444444456677777776654332 33333332221 23466778887541 10011 111223568888998
Q ss_pred C-hHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccch-hhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHH
Q 047833 341 P-QVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQF-YNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIEL 418 (473)
Q Consensus 341 p-~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~-~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ 418 (473)
+ -.++++.++ ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.. -+++.|.++|.+
T Consensus 274 ~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i~~ 343 (382)
T PLN02605 274 TNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIVAE 343 (382)
T ss_pred ccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHHHH
Confidence 8 456777766 5999999999999999999999998766665 789888877 998754 367899999999
Q ss_pred HHcC-C
Q 047833 419 VMNE-T 423 (473)
Q Consensus 419 ll~~-~ 423 (473)
++++ +
T Consensus 344 ll~~~~ 349 (382)
T PLN02605 344 WFGDKS 349 (382)
T ss_pred HHcCCH
Confidence 9998 5
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.44 E-value=2.1e-13 Score=113.90 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=83.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChh-
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYH- 86 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 86 (473)
|+|++.|+.||++|+++||++|++ |||+|++++++.+.+.+++ .|++|..++.+ ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~-------------~~~~~~~ 61 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA-----AGLEFVPIPGD-------------SRLPRSL 61 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH-----TT-EEEESSSC-------------GGGGHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc-----cCceEEEecCC-------------cCcCccc
Confidence 789999999999999999999999 9999999999999999988 88899988842 001110
Q ss_pred -hHHHHHHHHH--hhhHHHHHHHHhHhhh----cCC-CCccEEEECCCcchHHHHHHHhCCceEEEecchHH
Q 047833 87 -LVSKLIEATL--SFKPHFKKLVNDLIDE----QNG-YKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGF 150 (473)
Q Consensus 87 -~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~-~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~ 150 (473)
....+..... .....+.+.+++.... ..+ ..+|+++.+.....+..+|+.+|||++.....|.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 62 EPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred chhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1111111111 1233334444443211 111 14678888877777889999999999998776543
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.40 E-value=2.3e-10 Score=112.25 Aligned_cols=359 Identities=17% Similarity=0.091 Sum_probs=185.2
Q ss_pred CCccCHHHHHHHHHHHHhC-CCcEEE---EEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHH
Q 047833 14 MAQGHIIPFLALALHLEKT-NKYTIT---FVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVS 89 (473)
Q Consensus 14 ~~~GH~~p~l~La~~L~~~-rGh~Vt---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 89 (473)
-++|-=.-.++||++|++. +|++|. +++...-.+ +...+..+ .+..+|.. ++.. . .....+.
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~ip~~g-~~~~~~sg----g~~~----~--~~~~~~~ 70 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLGIPIIG-PTKELPSG----GFSY----Q--SLRGLLR 70 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCCCceeC-CCCCCCCC----CccC----C--CHHHHHH
Confidence 3556566678999999884 599999 998776432 21111122 23333311 2211 1 1111112
Q ss_pred HHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCCCCCCC
Q 047833 90 KLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLPHRNMDS 169 (473)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 169 (473)
.....+-...-....+++++.. +||+||+-.-+. ...+|...|+|++++.+.-... .+...+.. ...
T Consensus 71 ~~~~gl~~~~~~~~~~~~~~~~-----~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~------~~~~~~~~-~~~ 137 (396)
T TIGR03492 71 DLRAGLVGLTLGQWRALRKWAK-----KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY------YWESGPRR-SPS 137 (396)
T ss_pred HHHhhHHHHHHHHHHHHHHHhh-----cCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce------eecCCCCC-ccc
Confidence 2222132333344556666633 689999886555 7788999999999965421100 00000000 000
Q ss_pred Cc-ccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCCeEEeccc
Q 047833 170 DE-CVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRSVWPIGPV 248 (473)
Q Consensus 170 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~ 248 (473)
+. ..+++... .++ . +..-..+.++.++..+ + .... .+. ..+.++.++|-.
T Consensus 138 ~~~~~~~G~~~-------------------~p~-e---~n~l~~~~a~~v~~~~-~-~t~~---~l~-~~g~k~~~vGnP 188 (396)
T TIGR03492 138 DEYHRLEGSLY-------------------LPW-E---RWLMRSRRCLAVFVRD-R-LTAR---DLR-RQGVRASYLGNP 188 (396)
T ss_pred hhhhccCCCcc-------------------CHH-H---HHHhhchhhCEEeCCC-H-HHHH---HHH-HCCCeEEEeCcC
Confidence 00 01111110 011 0 0000112233333332 1 1222 222 223588899966
Q ss_pred CCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHh----CCCceEEEECCCCCCCc-
Q 047833 249 LLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEA----SGKNFIWVVRPPIGFDI- 323 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~- 323 (473)
..+.-.. .... -+ .+++++|.+--||-.......+..+++++.. .+..|++.+..+.....
T Consensus 189 v~d~l~~--------~~~~----~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~ 254 (396)
T TIGR03492 189 MMDGLEP--------PERK----PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKL 254 (396)
T ss_pred HHhcCcc--------cccc----cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHH
Confidence 5544110 0000 12 2235578888888754332333444444444 36788888743211110
Q ss_pred cc-ccc-cc--------------CCcEEEeccc-ChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhH
Q 047833 324 NS-EIK-CS--------------GQGLVVHKWA-PQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNS 386 (473)
Q Consensus 324 ~~-~~~-~~--------------~~nv~~~~~v-p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA 386 (473)
.. ... .. ..++.+..+. ...++++.++ ++|+-+|..| .|+...|+|+|++|....|. ||
T Consensus 255 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na 330 (396)
T TIGR03492 255 QAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TY 330 (396)
T ss_pred HHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HH
Confidence 00 000 00 1235554444 3466788877 5999999766 99999999999999877776 88
Q ss_pred HHHHHh---hcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHH-HHHHHHHHhcccccccCCcHHHHHHHHH
Q 047833 387 KLLEEE---IGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAY-EVREIIKNAFKNEENFQGSSVKAMNQFL 462 (473)
Q Consensus 387 ~~v~~~---lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 462 (473)
...++. .|.++.+.. .+.+.|.+++.++++|+ +..++.. ..++++ ...+++.+.++.+.
T Consensus 331 ~~~~~~~~l~g~~~~l~~-----~~~~~l~~~l~~ll~d~----~~~~~~~~~~~~~l--------g~~~a~~~ia~~i~ 393 (396)
T TIGR03492 331 GFAEAQSRLLGGSVFLAS-----KNPEQAAQVVRQLLADP----ELLERCRRNGQERM--------GPPGASARIAESIL 393 (396)
T ss_pred HHHHhhHhhcCCEEecCC-----CCHHHHHHHHHHHHcCH----HHHHHHHHHHHHhc--------CCCCHHHHHHHHHH
Confidence 776642 266666643 44589999999999988 4443333 233333 44565666666555
Q ss_pred H
Q 047833 463 N 463 (473)
Q Consensus 463 ~ 463 (473)
+
T Consensus 394 ~ 394 (396)
T TIGR03492 394 K 394 (396)
T ss_pred H
Confidence 4
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=1.9e-09 Score=105.03 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=91.7
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHh-CCCceEEEECCCCCCCccccccccCCcEEEecccChHH---hhccCCcce
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEA-SGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVE---ILSHRSVSV 353 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~---ll~~~~v~~ 353 (473)
++.+++..|+... ...+.+..++..+.. .+.++++.-... .. ........|+.+.+++++.+ ++..+++
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~---~~-~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~-- 269 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP---AR-ARLEARYPNVHFLGFLDGEELAAAYASADV-- 269 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc---hH-HHHhccCCcEEEEeccCHHHHHHHHHhCCE--
Confidence 3456677787654 334444444444443 245555554322 11 11114567899999998765 6777774
Q ss_pred eEeccC----cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHH
Q 047833 354 FLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIEL 429 (473)
Q Consensus 354 ~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 429 (473)
+|+.+. .+++.||+++|+|+|+.+..+ +...+++. +.|...+. -+.+++.++|.+++++++..+.+
T Consensus 270 ~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~ 339 (364)
T cd03814 270 FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-----GDAEAFAAALAALLADPELRRRM 339 (364)
T ss_pred EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-----CCHHHHHHHHHHHHcCHHHHHHH
Confidence 776654 368999999999999887553 45556655 78877754 46788999999999998444445
Q ss_pred HHHHHHHH
Q 047833 430 RKNAYEVR 437 (473)
Q Consensus 430 ~~~a~~l~ 437 (473)
.+++++..
T Consensus 340 ~~~~~~~~ 347 (364)
T cd03814 340 AARARAEA 347 (364)
T ss_pred HHHHHHHH
Confidence 55554443
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.26 E-value=1.7e-08 Score=102.02 Aligned_cols=142 Identities=20% Similarity=0.156 Sum_probs=89.4
Q ss_pred EEEEeeCCcccCCHHHHHHHHHHHHhC-CCceEEEECCCCCCCccc-cccccCCcEEEecccChHH---hhccCCcceeE
Q 047833 281 VLYVSFGSQNTIATSQMMQLAMALEAS-GKNFIWVVRPPIGFDINS-EIKCSGQGLVVHKWAPQVE---ILSHRSVSVFL 355 (473)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~-~~~~~~~nv~~~~~vp~~~---ll~~~~v~~~I 355 (473)
.+++..|++... ..+..++++++.. +.+++++-... ..+. .......++.+.+++++.+ +++.+++ ||
T Consensus 264 ~~i~~vGrl~~~--K~~~~li~a~~~~~~~~l~ivG~G~---~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V 336 (465)
T PLN02871 264 PLIVYVGRLGAE--KNLDFLKRVMERLPGARLAFVGDGP---YREELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FV 336 (465)
T ss_pred eEEEEeCCCchh--hhHHHHHHHHHhCCCcEEEEEeCCh---HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EE
Confidence 455666877542 2344466666664 56666554321 1111 1222345799999998654 6667665 66
Q ss_pred eccC----cchHHHHHhhCCcEEeccccccchhhHHHHHH---hhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHH
Q 047833 356 SHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE---EIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIE 428 (473)
Q Consensus 356 ~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~---~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 428 (473)
.-.. ..++.||+++|+|+|+.... .....+++ . +.|..++. -+.++++++|.++++|++..+.
T Consensus 337 ~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~ 406 (465)
T PLN02871 337 MPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADPELRER 406 (465)
T ss_pred ECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCHHHHHH
Confidence 4332 34788999999999987643 23334443 4 67877754 4678999999999998855556
Q ss_pred HHHHHHHHHHH
Q 047833 429 LRKNAYEVREI 439 (473)
Q Consensus 429 ~~~~a~~l~~~ 439 (473)
+.+++++..++
T Consensus 407 ~~~~a~~~~~~ 417 (465)
T PLN02871 407 MGAAAREEVEK 417 (465)
T ss_pred HHHHHHHHHHh
Confidence 77777665443
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.25 E-value=2.4e-08 Score=97.02 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=86.8
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHH---hhccCCccee
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVE---ILSHRSVSVF 354 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~---ll~~~~v~~~ 354 (473)
++.+++..|++... ..+.+...+..+...+.++++.-.... ............++.+.+++++.+ ++..+++ +
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~ 266 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLE-LEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV--L 266 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchh-hhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE--E
Confidence 44666777887542 334444444444334566655543221 110001112357899999997654 4777775 5
Q ss_pred Ee----ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHH
Q 047833 355 LS----HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIEL 429 (473)
Q Consensus 355 I~----HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 429 (473)
|+ ..|. .++.||+++|+|+|+.+. ..+...+.+. +.|..+.. -+.+++.++|.+++++++..+.+
T Consensus 267 i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~ 336 (359)
T cd03823 267 VVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-----GDAEDLAAALERLIDDPDLLERL 336 (359)
T ss_pred EEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-----CCHHHHHHHHHHHHhChHHHHHH
Confidence 53 2344 478999999999998754 3455666644 57877754 45899999999999988443344
Q ss_pred HHHH
Q 047833 430 RKNA 433 (473)
Q Consensus 430 ~~~a 433 (473)
.+++
T Consensus 337 ~~~~ 340 (359)
T cd03823 337 RAGI 340 (359)
T ss_pred HHhH
Confidence 4444
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=2.5e-09 Score=94.82 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=104.9
Q ss_pred CeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccc-cc-cccCCcEEEecccC-hHHhhccCCcceeE
Q 047833 279 TSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINS-EI-KCSGQGLVVHKWAP-QVEILSHRSVSVFL 355 (473)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~-~~-~~~~~nv~~~~~vp-~~~ll~~~~v~~~I 355 (473)
..-|+|++|... +....-.++..+.+.++.+-+++|+. ...... .. -...+|+....... -..|+..|+ +.|
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~-~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d--~aI 232 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS-NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEAD--LAI 232 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC-CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcc--hhe
Confidence 335999998654 34566677888888887887888744 222222 11 12234555544443 556888877 588
Q ss_pred eccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 047833 356 SHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYE 435 (473)
Q Consensus 356 ~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 435 (473)
+-||. |+.|++.-|+|.+++|+...|-.-|+..+.. |+-..+.. . +....+..-+.++.+|. ..|++.-.
T Consensus 233 ~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~---~-l~~~~~~~~~~~i~~d~----~~rk~l~~ 302 (318)
T COG3980 233 SAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY---H-LKDLAKDYEILQIQKDY----ARRKNLSF 302 (318)
T ss_pred eccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC---C-CchHHHHHHHHHhhhCH----HHhhhhhh
Confidence 88886 8999999999999999999999999999955 98888876 3 77777888889999988 66666544
Q ss_pred HHHH
Q 047833 436 VREI 439 (473)
Q Consensus 436 l~~~ 439 (473)
-++.
T Consensus 303 ~~~~ 306 (318)
T COG3980 303 GSKL 306 (318)
T ss_pred ccce
Confidence 4433
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.17 E-value=6.6e-08 Score=94.27 Aligned_cols=149 Identities=14% Similarity=0.152 Sum_probs=91.9
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECCCCCCCccc--cccccCCcEEEecccChHH---hhccCC
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQVE---ILSHRS 350 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~~---ll~~~~ 350 (473)
++.+++..|++.. ...+.+..++..+.. .+.++++..+......... .......++.+.+++|+.+ ++..++
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 280 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAAD 280 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcC
Confidence 3456667787764 234444444444444 3456665543221000000 1123457899999999755 577777
Q ss_pred cceeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhh
Q 047833 351 VSVFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKG 426 (473)
Q Consensus 351 v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~ 426 (473)
+ +|.. |...++.||+++|+|+|+... ...+..+.+. +.|..++. .. . ++.++|.+++++++..
T Consensus 281 ~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~---~~--~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 281 L--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP---GD--E-ALAEALLRLLQDPELR 347 (374)
T ss_pred E--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC---CC--H-HHHHHHHHHHhChHHH
Confidence 5 5533 334689999999999998654 3455666655 67777764 22 2 8999999999998544
Q ss_pred HHHHHHHHHHHHHH
Q 047833 427 IELRKNAYEVREII 440 (473)
Q Consensus 427 ~~~~~~a~~l~~~~ 440 (473)
+.+.+++++..+..
T Consensus 348 ~~~~~~~~~~~~~~ 361 (374)
T cd03817 348 RRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666554
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.15 E-value=9.7e-08 Score=95.02 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=63.7
Q ss_pred CcEEEe-cccChHHh---hccCCcceeEe-c----c-C-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEe
Q 047833 332 QGLVVH-KWAPQVEI---LSHRSVSVFLS-H----C-G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVA 400 (473)
Q Consensus 332 ~nv~~~-~~vp~~~l---l~~~~v~~~I~-H----G-G-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~ 400 (473)
+|+.+. +|+|..++ +..+++ +|. + | | -.++.||+.+|+|+|+... ......+++. +.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE-
Confidence 455544 58885544 667775 552 1 1 2 3479999999999998653 3455666645 678765
Q ss_pred cCCCCccCHHHHHHHHHHHHcC---ChhhHHHHHHHHHHH
Q 047833 401 RGKSSEVLKKDIAAKIELVMNE---TEKGIELRKNAYEVR 437 (473)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~a~~l~ 437 (473)
. +.++|+++|.++++| +++.+.+.++|++..
T Consensus 366 ----~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 ----G--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ----C--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 1 579999999999999 645666777777666
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.14 E-value=9.3e-08 Score=92.49 Aligned_cols=325 Identities=15% Similarity=0.091 Sum_probs=169.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh-hhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK-LKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
||++++....|+......++++|.+ .||+|++++....... ... .++.+..++.. ... ....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~------~~~-----~~~~ 63 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRA-AGYEVHVVAPPGDELEELEA-----LGVKVIPIPLD------RRG-----INPF 63 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHh-cCCeeEEEecCCCccccccc-----CCceEEecccc------ccc-----cChH
Confidence 5777777778899999999999999 9999999997765432 222 56666666532 000 0000
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHHhCCceEEEecchHHHHHHHhhhhccCC
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLP 163 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 163 (473)
.. .. ....+.+++++. +||+|++..... .+..+++..+.|.+.........
T Consensus 64 ---~~-~~----~~~~~~~~~~~~-------~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------ 116 (359)
T cd03808 64 ---KD-LK----ALLRLYRLLRKE-------RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGF------------ 116 (359)
T ss_pred ---hH-HH----HHHHHHHHHHhc-------CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcch------------
Confidence 01 11 112345666666 899999885443 23345554566655543211000
Q ss_pred CCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcC---C
Q 047833 164 HRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFG---R 240 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~ 240 (473)
..... . . .......+.+ .....++.+++.+....+ .+..... .
T Consensus 117 -----------~~~~~---~----~---------~~~~~~~~~~--~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~ 162 (359)
T cd03808 117 -----------VFTSG---G----L---------KRRLYLLLER--LALRFTDKVIFQNEDDRD-----LALKLGIIKKK 162 (359)
T ss_pred -----------hhccc---h----h---------HHHHHHHHHH--HHHhhccEEEEcCHHHHH-----HHHHhcCCCcC
Confidence 00000 0 0 0001111111 112233555555532211 2222211 1
Q ss_pred CeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECC
Q 047833 241 SVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRP 317 (473)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~ 317 (473)
....+.|...+.... ...... ..+++.+++..|++.. ...+.+...+..+.+ .+.++++....
T Consensus 163 ~~~~~~~~~~~~~~~-------~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~ 228 (359)
T cd03808 163 KTVLIPGSGVDLDRF-------SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDG 228 (359)
T ss_pred ceEEecCCCCChhhc-------Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 233333322222000 000000 1234567788888764 334555555555543 34555555433
Q ss_pred CCCCCcccc----ccccCCcEEEecccC-hHHhhccCCcceeEeccC----cchHHHHHhhCCcEEeccccccchhhHHH
Q 047833 318 PIGFDINSE----IKCSGQGLVVHKWAP-QVEILSHRSVSVFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKL 388 (473)
Q Consensus 318 ~~~~~~~~~----~~~~~~nv~~~~~vp-~~~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~nA~~ 388 (473)
.. ...... ......++.+.++.. -..++..+++ +|.-.. .+++.||+.+|+|+|+.+.. .....
T Consensus 229 ~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~ 301 (359)
T cd03808 229 DE-ENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREA 301 (359)
T ss_pred Cc-chhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhh
Confidence 21 111001 112346788777654 4567777775 664332 46899999999999986543 34455
Q ss_pred HHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 047833 389 LEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEV 436 (473)
Q Consensus 389 v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l 436 (473)
+.+. +.|...+. -+.+++.++|.+++.+++..+++.+++++.
T Consensus 302 i~~~-~~g~~~~~-----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 302 VIDG-VNGFLVPP-----GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred hhcC-cceEEECC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5544 67777654 468999999999999984444455555554
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.14 E-value=5.2e-08 Score=95.49 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=89.5
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHhC-CCceEEEECCCCCCCccc-c---ccccCCcEEEecccChHH---hhccC
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEAS-GKNFIWVVRPPIGFDINS-E---IKCSGQGLVVHKWAPQVE---ILSHR 349 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~-~---~~~~~~nv~~~~~vp~~~---ll~~~ 349 (473)
++.+++..|+... ...+.+...+..+... +.++++. |.. ..... . ......|+.+.+++++.+ ++..+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 295 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDG--PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAA 295 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCc--ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhh
Confidence 4467777888765 3344444444544443 5565544 322 11111 1 223457899999998654 56677
Q ss_pred CcceeEeccC---------cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHH
Q 047833 350 SVSVFLSHCG---------WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 350 ~v~~~I~HGG---------~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll 420 (473)
++ +|.... -+++.||+.+|+|+|+.+..+.+... ... +.|..++. -+.+++.++|.+++
T Consensus 296 di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~-~~g~~~~~-----~~~~~l~~~i~~~~ 363 (394)
T cd03794 296 DV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEA-GAGLVVPP-----GDPEALAAAILELL 363 (394)
T ss_pred Ce--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccC-CcceEeCC-----CCHHHHHHHHHHHH
Confidence 75 554322 23479999999999998876544332 323 56666654 37899999999999
Q ss_pred cCChhhHHHHHHHHHHHH
Q 047833 421 NETEKGIELRKNAYEVRE 438 (473)
Q Consensus 421 ~~~~~~~~~~~~a~~l~~ 438 (473)
+|++..+.+++++++...
T Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 364 DDPEERAEMGENGRRYVE 381 (394)
T ss_pred hChHHHHHHHHHHHHHHH
Confidence 888554555566555444
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.12 E-value=7.4e-08 Score=93.44 Aligned_cols=320 Identities=14% Similarity=0.079 Sum_probs=164.9
Q ss_pred ccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHH
Q 047833 16 QGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEAT 95 (473)
Q Consensus 16 ~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (473)
.|+-..+..+++.|.+ .||+|++++............. .... ... ..... .......
T Consensus 14 ~G~~~~~~~l~~~L~~-~g~~v~i~~~~~~~~~~~~~~~--------~~~~---~~~------~~~~~-----~~~~~~~ 70 (374)
T cd03801 14 GGAERHVLELARALAA-RGHEVTVLTPGDGGLPDEEEVG--------GIVV---VRP------PPLLR-----VRRLLLL 70 (374)
T ss_pred CcHhHHHHHHHHHHHh-cCceEEEEecCCCCCCceeeec--------Ccce---ecC------Ccccc-----cchhHHH
Confidence 6889999999999999 9999999997664322211000 0000 000 00000 0001111
Q ss_pred HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHH--HHHHHhCCceEEEecchHHHHHHHhhhhccCCCCCCCCCccc
Q 047833 96 LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCK--EIAQEYGIFHAIFIGGGGFGFACYYSLWVNLPHRNMDSDECV 173 (473)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 173 (473)
......+..++++. +||+|+......... ..+...++|++.........
T Consensus 71 ~~~~~~~~~~~~~~-------~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~---------------------- 121 (374)
T cd03801 71 LLLALRLRRLLRRE-------RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFG---------------------- 121 (374)
T ss_pred HHHHHHHHHHhhhc-------CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhh----------------------
Confidence 12233456667777 899999997665443 47788899998864321100
Q ss_pred CCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCC---CeEEecccCC
Q 047833 174 LPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGR---SVWPIGPVLL 250 (473)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~vGp~~~ 250 (473)
... .. . . .................+.+++.+... .+.+...++. ++..+.....
T Consensus 122 ---~~~---~~----~------~--~~~~~~~~~~~~~~~~~d~~i~~s~~~-----~~~~~~~~~~~~~~~~~i~~~~~ 178 (374)
T cd03801 122 ---RPG---NE----L------G--LLLKLARALERRALRRADRIIAVSEAT-----REELRELGGVPPEKITVIPNGVD 178 (374)
T ss_pred ---ccc---cc----h------h--HHHHHHHHHHHHHHHhCCEEEEecHHH-----HHHHHhcCCCCCCcEEEecCccc
Confidence 000 00 0 0 000000111112333445555555322 2223333322 4555543322
Q ss_pred CccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCccc-CCHHHHHHHHHHHHhC--CCceEEEECCCCCCCccc-c
Q 047833 251 STENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNT-IATSQMMQLAMALEAS--GKNFIWVVRPPIGFDINS-E 326 (473)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~-~ 326 (473)
..... ............ ..+..+++.+|+... ...+.+...+..+... +.++++..+.. .... .
T Consensus 179 ~~~~~--------~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~---~~~~~~ 246 (374)
T cd03801 179 TERFR--------PAPRAARRRLGI-PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP---LREELE 246 (374)
T ss_pred ccccC--------ccchHHHhhcCC-cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH---HHHHHH
Confidence 22000 000111111111 223456677787753 2233333333333332 35555444221 1111 1
Q ss_pred ----ccccCCcEEEecccChH---HhhccCCcceeEe----ccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcc
Q 047833 327 ----IKCSGQGLVVHKWAPQV---EILSHRSVSVFLS----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGV 395 (473)
Q Consensus 327 ----~~~~~~nv~~~~~vp~~---~ll~~~~v~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~ 395 (473)
....+.++.+.+++++. .++..+++ +|+ -|..+++.||+.+|+|+|+.+. ...+..+++. +.
T Consensus 247 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~ 319 (374)
T cd03801 247 ALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ET 319 (374)
T ss_pred HHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cc
Confidence 12356889999999744 46777775 553 3556799999999999998765 4455566645 67
Q ss_pred eEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHH
Q 047833 396 CVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAY 434 (473)
Q Consensus 396 g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~ 434 (473)
|...+. .+.+++.++|.+++++++..+++.++++
T Consensus 320 g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 320 GLLVPP-----GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred eEEeCC-----CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 777754 4589999999999999833333444433
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.11 E-value=1.1e-07 Score=94.27 Aligned_cols=146 Identities=11% Similarity=0.097 Sum_probs=90.8
Q ss_pred eEEEEeeCCcccC-CHHHHHHHHHHHHh--CCCceEEEECCCCCCCcc------c--cccccCCcEEEecccChHHh---
Q 047833 280 SVLYVSFGSQNTI-ATSQMMQLAMALEA--SGKNFIWVVRPPIGFDIN------S--EIKCSGQGLVVHKWAPQVEI--- 345 (473)
Q Consensus 280 ~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~------~--~~~~~~~nv~~~~~vp~~~l--- 345 (473)
..+++..|+.... ..+.+...+..+.+ .+.+++++.+........ . .......|+.+.+++|+.++
T Consensus 220 ~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 299 (398)
T cd03800 220 KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPAL 299 (398)
T ss_pred CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHH
Confidence 3566777887642 33443333333432 256777666533111000 0 11123478999999997654
Q ss_pred hccCCcceeEec---cC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 346 LSHRSVSVFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 346 l~~~~v~~~I~H---GG-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
+..+++ +|+. .| ..++.||+++|+|+|+.+.. .....+++. +.|...+. -+.+++.++|.++++
T Consensus 300 ~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~l~~ 367 (398)
T cd03800 300 YRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-----RDPEALAAALRRLLT 367 (398)
T ss_pred HHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC-----CCHHHHHHHHHHHHh
Confidence 777774 6643 22 35899999999999987643 355556644 67887754 468999999999999
Q ss_pred CChhhHHHHHHHHHHH
Q 047833 422 ETEKGIELRKNAYEVR 437 (473)
Q Consensus 422 ~~~~~~~~~~~a~~l~ 437 (473)
+++..+.+.++|++..
T Consensus 368 ~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 368 DPALRRRLSRAGLRRA 383 (398)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8844445566655543
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=3.3e-07 Score=89.87 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=86.2
Q ss_pred eEEEEeeCCcccC-CHHHHHHHHHHHHh-CCCceEEEECCCCCCCccc-----cccccCCcEEEecccC-hHHhhccCCc
Q 047833 280 SVLYVSFGSQNTI-ATSQMMQLAMALEA-SGKNFIWVVRPPIGFDINS-----EIKCSGQGLVVHKWAP-QVEILSHRSV 351 (473)
Q Consensus 280 ~~V~vs~GS~~~~-~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~-----~~~~~~~nv~~~~~vp-~~~ll~~~~v 351 (473)
..+++.+|..... ..+.+-..+..+.+ .+.++++.-... +... ......+++.+.++.+ -..++..+++
T Consensus 197 ~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~ 273 (371)
T cd04962 197 EKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGP---ERSPAERLARELGLQDDVLFLGKQDHVEELLSIADL 273 (371)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCc---CHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCE
Confidence 3566777877642 23333333333333 355665554321 1111 1112346788888876 3566777775
Q ss_pred ceeEe----ccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhH
Q 047833 352 SVFLS----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGI 427 (473)
Q Consensus 352 ~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 427 (473)
+|. -|.-.++.||+.+|+|+|+... ...+..+++. ..|...+. -+.+++.++|.++++++...+
T Consensus 274 --~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-----~~~~~l~~~i~~l~~~~~~~~ 341 (371)
T cd04962 274 --FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-----GDVEAMAEYALSLLEDDELWQ 341 (371)
T ss_pred --EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-----CCHHHHHHHHHHHHhCHHHHH
Confidence 552 2334599999999999998644 3455556543 46665543 477899999999999884445
Q ss_pred HHHHHHHHH
Q 047833 428 ELRKNAYEV 436 (473)
Q Consensus 428 ~~~~~a~~l 436 (473)
++++++++.
T Consensus 342 ~~~~~~~~~ 350 (371)
T cd04962 342 EFSRAARNR 350 (371)
T ss_pred HHHHHHHHH
Confidence 566666665
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.02 E-value=1.2e-06 Score=87.36 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=66.4
Q ss_pred CcEEEecccChHH---hhccCCcceeEeccCc------chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecC
Q 047833 332 QGLVVHKWAPQVE---ILSHRSVSVFLSHCGW------NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARG 402 (473)
Q Consensus 332 ~nv~~~~~vp~~~---ll~~~~v~~~I~HGG~------gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~ 402 (473)
.|+.+.+++|+.+ +++.+++-++.+..+. +.+.|++.+|+|+|+....+. .....+. +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCC-
Confidence 4799999998654 6778786434344332 236799999999999875431 1122232 66777754
Q ss_pred CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 047833 403 KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVRE 438 (473)
Q Consensus 403 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~ 438 (473)
-+.++++++|.++++|++..+.+++++++..+
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46789999999999988555667777776544
No 57
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.01 E-value=1.5e-07 Score=92.09 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=93.3
Q ss_pred CeEEEEeeCCcccCCHHHHHHHHHHHHhC-----CCceEEEECCCCCCCccc--cccccCCcEEEecccChH---Hhhcc
Q 047833 279 TSVLYVSFGSQNTIATSQMMQLAMALEAS-----GKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQV---EILSH 348 (473)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~---~ll~~ 348 (473)
++.|+++++-..... ..+..+++++... +.++++..+.+. ..... ......+++.+.+.+++. .+++.
T Consensus 197 ~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 274 (365)
T TIGR00236 197 KRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNP-VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAAN 274 (365)
T ss_pred CCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCCh-HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHh
Confidence 346666655432221 3355566666542 456666544321 10000 111234678888877754 45566
Q ss_pred CCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHH
Q 047833 349 RSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIE 428 (473)
Q Consensus 349 ~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 428 (473)
++ ++|+-.|. .+.||+++|+|+|.++-.++++. +.+. |.++.+. .+.++|.+++.++++++ .
T Consensus 275 ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~----~ 336 (365)
T TIGR00236 275 SH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDP----D 336 (365)
T ss_pred CC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhCh----H
Confidence 66 58887664 47999999999999976555553 2235 7776553 36789999999999988 5
Q ss_pred HHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Q 047833 429 LRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLN 463 (473)
Q Consensus 429 ~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (473)
.+++..+-. +.. .+++++.+.++.+.+
T Consensus 337 ~~~~~~~~~----~~~----g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 337 EYKKMSNAS----NPY----GDGEASERIVEELLN 363 (365)
T ss_pred HHHHhhhcC----CCC----cCchHHHHHHHHHHh
Confidence 555433222 112 456666666666554
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.98 E-value=4e-07 Score=91.15 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=77.6
Q ss_pred cEEEecccC-hHHhhccCCcceeEe----ccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCcc
Q 047833 333 GLVVHKWAP-QVEILSHRSVSVFLS----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEV 407 (473)
Q Consensus 333 nv~~~~~vp-~~~ll~~~~v~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~ 407 (473)
++.+.+... -..+++.+++ +|+. -||..++.||+.+|+|+|+.|...++......+.+. |.++.. -
T Consensus 303 ~v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~ 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------E 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------C
Confidence 445544443 2456677775 3552 134446999999999999999988888888877656 766553 2
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 408 LKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 408 ~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+.++|.++|.++++|++..+.+.++|+++.+.- .|...+.++.+.+.+.
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~----------~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN----------QGALQRTLQLLEPYLP 422 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC----------ccHHHHHHHHHHHhcc
Confidence 568999999999999855556666666554333 3445666666655443
No 59
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.98 E-value=1.1e-06 Score=87.11 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCcEEEecccChHH---hhccCCcceeEe---ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCC
Q 047833 331 GQGLVVHKWAPQVE---ILSHRSVSVFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGK 403 (473)
Q Consensus 331 ~~nv~~~~~vp~~~---ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~ 403 (473)
.++|.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+.. .......+... ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC--
Confidence 46899999999765 4566665 543 2333 48899999999999864 34455555533 45766654
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 047833 404 SSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREI 439 (473)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~ 439 (473)
-+.++++++|.+++++++..+.+.++|++..++
T Consensus 351 ---~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 351 ---FDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 468999999999999985555666666655443
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.96 E-value=6e-07 Score=86.39 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=87.3
Q ss_pred eEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECCCCCCC-ccc--cccccCCcEEEecccC-hHHhhccCCcc
Q 047833 280 SVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRPPIGFD-INS--EIKCSGQGLVVHKWAP-QVEILSHRSVS 352 (473)
Q Consensus 280 ~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~-~~~--~~~~~~~nv~~~~~vp-~~~ll~~~~v~ 352 (473)
..+++..|+... ...+.+...+..+.+ .+.++++.-... ... ... .......++.+.++.. -..++..+++
T Consensus 178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~- 255 (348)
T cd03820 178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP-EREALEALIKELGLEDRVILLGFTKNIEEYYAKASI- 255 (348)
T ss_pred CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC-CHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE-
Confidence 345666777654 234444445555543 344555544222 000 000 1122346777777733 4567777775
Q ss_pred eeEecc----CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhc-ceEEEecCCCCccCHHHHHHHHHHHHcCChhhH
Q 047833 353 VFLSHC----GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIG-VCVEVARGKSSEVLKKDIAAKIELVMNETEKGI 427 (473)
Q Consensus 353 ~~I~HG----G~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG-~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 427 (473)
+|.-. ..+++.||+.+|+|+|+.+..+.+. .+... | .|...+. .+.+++.++|.++++|++..+
T Consensus 256 -~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~-----~~~~~~~~~i~~ll~~~~~~~ 324 (348)
T cd03820 256 -FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN-----GDVEALAEALLRLMEDEELRK 324 (348)
T ss_pred -EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC-----CCHHHHHHHHHHHHcCHHHHH
Confidence 55443 2468999999999999876544333 23334 4 7776654 467999999999999995545
Q ss_pred HHHHHHHHHHHHH
Q 047833 428 ELRKNAYEVREII 440 (473)
Q Consensus 428 ~~~~~a~~l~~~~ 440 (473)
.+.++++++.+.+
T Consensus 325 ~~~~~~~~~~~~~ 337 (348)
T cd03820 325 RMGANARESAERF 337 (348)
T ss_pred HHHHHHHHHHHHh
Confidence 5666665555444
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.95 E-value=5.8e-07 Score=87.43 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=92.3
Q ss_pred eEEEEeeCCcccCCHHHHHHHHHHHHhCC-CceEEEECCCCCCCccc--cccccCCcEEEecccChH---HhhccCCcce
Q 047833 280 SVLYVSFGSQNTIATSQMMQLAMALEASG-KNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQV---EILSHRSVSV 353 (473)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~---~ll~~~~v~~ 353 (473)
..+++..|+..... ....+++++.... .++++............ .......||.+.+|+|+. .+++.+++-+
T Consensus 191 ~~~i~~~G~~~~~K--~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i 268 (357)
T cd03795 191 RPFFLFVGRLVYYK--GLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFV 268 (357)
T ss_pred CcEEEEeccccccc--CHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEE
Confidence 35667778775422 2334566666655 56555543221000001 122345789999999975 4666677622
Q ss_pred eEe---ccCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHH
Q 047833 354 FLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIEL 429 (473)
Q Consensus 354 ~I~---HGG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 429 (473)
+-+ +.|.| ++.||+++|+|+|+....+.+..+-. +. +.|...+. -+.+++.++|.++++|+++.+++
T Consensus 269 ~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-----~d~~~~~~~i~~l~~~~~~~~~~ 339 (357)
T cd03795 269 FPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-----GDPAALAEAIRRLLEDPELRERL 339 (357)
T ss_pred eCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-----CCHHHHHHHHHHHHHCHHHHHHH
Confidence 222 24444 78999999999999765555443332 14 67766643 47899999999999998665667
Q ss_pred HHHHHHHHHH
Q 047833 430 RKNAYEVREI 439 (473)
Q Consensus 430 ~~~a~~l~~~ 439 (473)
++++++..++
T Consensus 340 ~~~~~~~~~~ 349 (357)
T cd03795 340 GEAARERAEE 349 (357)
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.91 E-value=5.5e-06 Score=80.46 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=81.5
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHhC--CCceEEEECCCCCCCcc-c--cccccCCcEEEecccChH---HhhccC
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEAS--GKNFIWVVRPPIGFDIN-S--EIKCSGQGLVVHKWAPQV---EILSHR 349 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~-~--~~~~~~~nv~~~~~vp~~---~ll~~~ 349 (473)
+..+++..|+.... ..+.+...+..+... +.++++..... ..... . .......|+.+.+++++. .++..+
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP-LREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc-chHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 44667777877642 334444444444443 34444333211 01100 0 112345789999999865 556676
Q ss_pred CcceeE----eccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 350 SVSVFL----SHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 350 ~v~~~I----~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++ +| +-|..+++.||+++|+|+|+.+.. .....+.+. +.|...+. -+.+++.++|.++++++
T Consensus 280 d~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 280 DV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-----GDPEALAEAILRLLADP 345 (377)
T ss_pred Ce--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-----CCHHHHHHHHHHHhcCc
Confidence 75 54 234557899999999999986543 344555644 66666654 57899999999999998
No 63
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.90 E-value=2.2e-06 Score=84.78 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=88.7
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHhC-----CCceEEEECCCCCCCc-----cc-----cc-cccCCcEEEecccC
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEAS-----GKNFIWVVRPPIGFDI-----NS-----EI-KCSGQGLVVHKWAP 341 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~-----~~-----~~-~~~~~nv~~~~~vp 341 (473)
...+++..|++.. ...+.+...+.-+... +.+++++-+....... .. .. ....++|.+.+++|
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 4467778888765 3345444444444332 4566555432210000 00 11 23357899999999
Q ss_pred hH---HhhccCCcceeEec---cC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHH
Q 047833 342 QV---EILSHRSVSVFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAA 414 (473)
Q Consensus 342 ~~---~ll~~~~v~~~I~H---GG-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~ 414 (473)
+. .++..+++ +|.. -| ..++.||+.+|+|+|+.-.. .....+... +.|...+ .+.+++++
T Consensus 290 ~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~------~~~~~~a~ 356 (392)
T cd03805 290 DSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE------PTPEEFAE 356 (392)
T ss_pred hHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC------CCHHHHHH
Confidence 75 46777775 5532 22 25789999999999997443 334445534 5566553 26889999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHH
Q 047833 415 KIELVMNETEKGIELRKNAYEVR 437 (473)
Q Consensus 415 ~i~~ll~~~~~~~~~~~~a~~l~ 437 (473)
+|.+++++++..+++.++|++..
T Consensus 357 ~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 357 AMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred HHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999855556666666543
No 64
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.89 E-value=2e-06 Score=83.96 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=72.9
Q ss_pred cCCcEEEecccC-hH---HhhccCCcceeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEec
Q 047833 330 SGQGLVVHKWAP-QV---EILSHRSVSVFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVAR 401 (473)
Q Consensus 330 ~~~nv~~~~~vp-~~---~ll~~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~ 401 (473)
...++...+|++ +. .+++.+++ +|.- |..+++.||+.+|+|+|+.... .....+.+. +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC
Confidence 356788889998 43 45777775 6663 3357899999999999986542 333334433 46666643
Q ss_pred CCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 402 GKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
.+.+++.+++.+++++++..+.+.+++++...+ .-+..+..+++++.++
T Consensus 315 -----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-----------~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 -----GDPEDLAEGIEWLLADPDEREELGEAARELAEN-----------EFDSRVQAKRYLSLYE 363 (365)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHh
Confidence 478899999999999883333444554443321 2234556666665544
No 65
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.88 E-value=7.3e-06 Score=79.81 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=85.7
Q ss_pred eEEEEeeCCcccC-CHHHHHHHHHHHHhC--CCceEEEECCCCCCCcccc--------ccccCCcEEEec-ccCh---HH
Q 047833 280 SVLYVSFGSQNTI-ATSQMMQLAMALEAS--GKNFIWVVRPPIGFDINSE--------IKCSGQGLVVHK-WAPQ---VE 344 (473)
Q Consensus 280 ~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~--------~~~~~~nv~~~~-~vp~---~~ 344 (473)
..+++.+|++... ..+.+...+..+.+. +.++++.-... ....... ......++.+.+ |+|+ ..
T Consensus 185 ~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 185 RPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETH-PDLERYRGEAYALAERLGLADRVIFINRYLPDEELPE 263 (366)
T ss_pred CeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCc-cchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHH
Confidence 3556677877653 334444444444442 44555443321 1100000 112346787765 4885 45
Q ss_pred hhccCCcceeEe----c--cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHH
Q 047833 345 ILSHRSVSVFLS----H--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIEL 418 (473)
Q Consensus 345 ll~~~~v~~~I~----H--GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ 418 (473)
+++.+++ +|. . |..+++.||+++|+|+|+.+..+ ...+... +.|...+. -+.+++.+++.+
T Consensus 264 ~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~-----~d~~~~~~~l~~ 330 (366)
T cd03822 264 LFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP-----GDPAALAEAIRR 330 (366)
T ss_pred HHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC-----CCHHHHHHHHHH
Confidence 6667765 552 1 33468999999999999987654 2334435 67776654 358899999999
Q ss_pred HHcCChhhHHHHHHHHHHHHH
Q 047833 419 VMNETEKGIELRKNAYEVREI 439 (473)
Q Consensus 419 ll~~~~~~~~~~~~a~~l~~~ 439 (473)
++++++..+++.++++++.+.
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 331 LLADPELAQALRARAREYARA 351 (366)
T ss_pred HHcChHHHHHHHHHHHHHHhh
Confidence 999974444566666555544
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.87 E-value=5.3e-06 Score=78.69 Aligned_cols=300 Identities=17% Similarity=0.128 Sum_probs=159.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc--hhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN--LRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
||.+--. ..-|+.-+-.+.++|.+ +||+|.+.+-... .+.+.. .++++..+... + .
T Consensus 2 kIwiDi~-~p~hvhfFk~~I~eL~~-~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~----g--~--------- 59 (335)
T PF04007_consen 2 KIWIDIT-HPAHVHFFKNIIRELEK-RGHEVLITARDKDETEELLDL-----YGIDYIVIGKH----G--D--------- 59 (335)
T ss_pred eEEEECC-CchHHHHHHHHHHHHHh-CCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCC----C--C---------
Confidence 4543332 33599999999999999 9999999875543 344455 78888887732 1 1
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCC
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGGGFGFACYYSLWVNLPH 164 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~ 164 (473)
.....+..... ..-.+.+++++. +||++|+-. ++.+..+|..+|+|+|.+.-......... ...|
T Consensus 60 -~~~~Kl~~~~~-R~~~l~~~~~~~-------~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~~----Lt~P- 124 (335)
T PF04007_consen 60 -SLYGKLLESIE-RQYKLLKLIKKF-------KPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQNR----LTLP- 124 (335)
T ss_pred -CHHHHHHHHHH-HHHHHHHHHHhh-------CCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhccce----eehh-
Confidence 01122333332 234556667777 899999753 46678899999999999865321110000 0000
Q ss_pred CCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCCeEE
Q 047833 165 RNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRSVWP 244 (473)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 244 (473)
..+.+..|..-. . .++.+... +....-.+.+.| ..+
T Consensus 125 ---la~~i~~P~~~~-------------------~---~~~~~~G~---~~~i~~y~G~~E----------------~ay 160 (335)
T PF04007_consen 125 ---LADVIITPEAIP-------------------K---EFLKRFGA---KNQIRTYNGYKE----------------LAY 160 (335)
T ss_pred ---cCCeeECCcccC-------------------H---HHHHhcCC---cCCEEEECCeee----------------EEe
Confidence 000011110000 0 00000000 001111233221 112
Q ss_pred ecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCccc----CCHHHHHHHHHHHHhCCCceEEEECCCCC
Q 047833 245 IGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNT----IATSQMMQLAMALEASGKNFIWVVRPPIG 320 (473)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 320 (473)
+-|.. ++++..+-++.. +.+.|++=+-+..+ ...+.+..+++.+++.+..+++.....
T Consensus 161 l~~F~---------------Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~-- 222 (335)
T PF04007_consen 161 LHPFK---------------PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE-- 222 (335)
T ss_pred ecCCC---------------CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc--
Confidence 22211 122333444432 45677777766433 234567778888988887744443221
Q ss_pred CCccccccccCCcEEE-ecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEE
Q 047833 321 FDINSEIKCSGQGLVV-HKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEV 399 (473)
Q Consensus 321 ~~~~~~~~~~~~nv~~-~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l 399 (473)
...+... .-++.+ ..-++..+||.+++ +||+-|| ....||..-|+|.+.+ +.++-...-+.+.+. |. +
T Consensus 223 ~~~~~~~---~~~~~i~~~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl---l 291 (335)
T PF04007_consen 223 DQRELFE---KYGVIIPPEPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL---L 291 (335)
T ss_pred chhhHHh---ccCccccCCCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC---e
Confidence 1110001 111222 24556668999988 4888777 6778999999999985 223322333456656 65 2
Q ss_pred ecCCCCccCHHHHHHHHHHHH
Q 047833 400 ARGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 400 ~~~~~~~~~~~~l~~~i~~ll 420 (473)
. ...+.+++.+.|.+.+
T Consensus 292 ~----~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 292 Y----HSTDPDEIVEYVRKNL 308 (335)
T ss_pred E----ecCCHHHHHHHHHHhh
Confidence 2 2456677776555443
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.86 E-value=5.8e-06 Score=80.46 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=85.9
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHh--CCCceEEEECCCCCCCccc-c----ccccCCcEEEecccChHH---hhc
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEA--SGKNFIWVVRPPIGFDINS-E----IKCSGQGLVVHKWAPQVE---ILS 347 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~-~----~~~~~~nv~~~~~vp~~~---ll~ 347 (473)
+..+++..|+.... ..+.+...+..+.+ .+.+++++-... +..... . .....+++.+.+++++.+ ++.
T Consensus 202 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 280 (375)
T cd03821 202 DKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE-GGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALA 280 (375)
T ss_pred CCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC-cchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHh
Confidence 34566777877542 33444444444444 345554443221 111111 1 123357899999999544 467
Q ss_pred cCCcceeEec---cC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 348 HRSVSVFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 348 ~~~v~~~I~H---GG-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
.+++ +|.- .| ..++.||+++|+|+|+.+. ......+. . +.|...+. +.+++.++|.++++++
T Consensus 281 ~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~-~-~~~~~~~~------~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 281 DADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIE-Y-GCGWVVDD------DVDALAAALRRALELP 346 (375)
T ss_pred hCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhh-c-CceEEeCC------ChHHHHHHHHHHHhCH
Confidence 7775 4432 23 4689999999999999754 33444444 4 67766543 3489999999999998
Q ss_pred hhhHHHHHHHHHH
Q 047833 424 EKGIELRKNAYEV 436 (473)
Q Consensus 424 ~~~~~~~~~a~~l 436 (473)
+..+.+.+++++.
T Consensus 347 ~~~~~~~~~~~~~ 359 (375)
T cd03821 347 QRLKAMGENGRAL 359 (375)
T ss_pred HHHHHHHHHHHHH
Confidence 4444566666655
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.85 E-value=9.9e-08 Score=93.40 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=81.9
Q ss_pred CCeEEEEeeCCcccC-CHHHHHHHHHHHHhCCC-ceEEEECCCC-C-CCccccccc--c-CCcEEEecccChH---Hhhc
Q 047833 278 YTSVLYVSFGSQNTI-ATSQMMQLAMALEASGK-NFIWVVRPPI-G-FDINSEIKC--S-GQGLVVHKWAPQV---EILS 347 (473)
Q Consensus 278 ~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~-~-~~~~~~~~~--~-~~nv~~~~~vp~~---~ll~ 347 (473)
+++.|++++|..... ....+..+++++..... +++++..... + ......... . .+++.+.+..++. .++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 276 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLK 276 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHH
Confidence 355788888877653 34556677777766432 2444432210 0 011111111 1 4678887766644 4455
Q ss_pred cCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 348 HRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 348 ~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
.++ +||+..| |.+.|++++|+|+|+++.. |. +..+.+. |+++.+. -+.++|.++|.++++++
T Consensus 277 ~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~------~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 277 NAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG------TDPEAILAAIEKLLSDE 338 (363)
T ss_pred cCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC------CCHHHHHHHHHHHhcCc
Confidence 666 5999998 7788999999999998743 22 3334435 6665542 25789999999999988
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.85 E-value=3e-06 Score=84.31 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=88.4
Q ss_pred eEEEEeeCCcccC-CHHHHHHHHHHHHh--CC--CceEEEECCCC-C-CCccc-----cccccCCcEEEecccChH---H
Q 047833 280 SVLYVSFGSQNTI-ATSQMMQLAMALEA--SG--KNFIWVVRPPI-G-FDINS-----EIKCSGQGLVVHKWAPQV---E 344 (473)
Q Consensus 280 ~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~--~~~i~~~~~~~-~-~~~~~-----~~~~~~~nv~~~~~vp~~---~ 344 (473)
..+++..|++... ..+.+...+..+.+ .+ .+++++-+... + ...+. ......+++.+.+++++. .
T Consensus 219 ~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 298 (405)
T TIGR03449 219 TKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVH 298 (405)
T ss_pred CcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHH
Confidence 3566778888653 33444443333322 22 44454443210 1 01111 112234689999999864 5
Q ss_pred hhccCCcceeEe---ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHH
Q 047833 345 ILSHRSVSVFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 345 ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll 420 (473)
+++.+++ +|. +.|+ .++.||+++|+|+|+.... .....+.+. +.|..++. -+.++++++|.+++
T Consensus 299 ~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-----~d~~~la~~i~~~l 366 (405)
T TIGR03449 299 VYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-----HDPADWADALARLL 366 (405)
T ss_pred HHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC-----CCHHHHHHHHHHHH
Confidence 6778775 553 3344 5899999999999987543 344455544 56776653 47799999999999
Q ss_pred cCChhhHHHHHHHHHHHH
Q 047833 421 NETEKGIELRKNAYEVRE 438 (473)
Q Consensus 421 ~~~~~~~~~~~~a~~l~~ 438 (473)
++++..+.+++++++..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~ 384 (405)
T TIGR03449 367 DDPRTRIRMGAAAVEHAA 384 (405)
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 988444556666665443
No 70
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.83 E-value=1e-05 Score=78.75 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=89.5
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECCCCCCCcc-----c-cccccCCcEEEecccC-hHHhhcc
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRPPIGFDIN-----S-EIKCSGQGLVVHKWAP-QVEILSH 348 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~-----~-~~~~~~~nv~~~~~vp-~~~ll~~ 348 (473)
+..+++..|++.. ...+.+...+..+.. .+.+++++-......... . ......++|.+.++.+ ...++..
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ 263 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL 263 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh
Confidence 4456677787765 335556666666655 345555554322100000 0 0113356789888854 4667777
Q ss_pred CCcceeEe----ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc-C
Q 047833 349 RSVSVFLS----HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN-E 422 (473)
Q Consensus 349 ~~v~~~I~----HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~-~ 422 (473)
+++ +|+ +-|+ .++.||+++|+|+|+... ......+... +.|..++. -+.+++.++|..++. +
T Consensus 264 ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~ 331 (355)
T cd03819 264 ADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-----GDAEALAQALDQILSLL 331 (355)
T ss_pred CCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-----CCHHHHHHHHHHHHhhC
Confidence 776 443 2344 599999999999998653 2344455533 46777654 478899999965554 5
Q ss_pred ChhhHHHHHHHHHHHHH
Q 047833 423 TEKGIELRKNAYEVREI 439 (473)
Q Consensus 423 ~~~~~~~~~~a~~l~~~ 439 (473)
+++.++++++|++..+.
T Consensus 332 ~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 332 PEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54555667776666553
No 71
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.83 E-value=1.8e-06 Score=83.19 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=78.7
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHhC--CCceEEEECCCCCCCccc--cccccCCcEEEecccC-hHHhhccCCcc
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEAS--GKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAP-QVEILSHRSVS 352 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp-~~~ll~~~~v~ 352 (473)
+..+++..|+.... ..+.+...+..+... +.+++++........... ......+++.+.++.+ ...++..+++
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~- 266 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADL- 266 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCE-
Confidence 44677778887642 234444444444443 456555443221000000 1123356788888876 3567778775
Q ss_pred eeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHH---HHHHHHHHcCC
Q 047833 353 VFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDI---AAKIELVMNET 423 (473)
Q Consensus 353 ~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l---~~~i~~ll~~~ 423 (473)
+|.- |..+++.||+++|+|+|+.... ..+..+.+. +.|...+. -+.+.+ .+++.++++++
T Consensus 267 -~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 267 -FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-----GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred -EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-----CCHHHHHHHHHHHHhccCCh
Confidence 5532 3346899999999999986443 556667655 77877754 456666 56666777766
No 72
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.82 E-value=3e-06 Score=84.03 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=76.7
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECCCCCCCccc--cccccCCcEEEecccChH---HhhccCC
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQV---EILSHRS 350 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~---~ll~~~~ 350 (473)
+..+++..|.... ...+.+...+..+.+ .+.+++++-.......... ......+++.+.+|+|+. .+++.++
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad 271 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGH 271 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 4467777787754 234444444444433 3455555543220000001 112234678989999864 4566666
Q ss_pred cceeEe---ccCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+ +|. +-|.| ++.||+++|+|+|+.+..+ ....+. . |-+ .+.. .+.+++.+++.+++++.
T Consensus 272 ~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~-~~~~-----~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 272 I--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMI-LLAE-----PDVESIVRKLEEAISIL 334 (398)
T ss_pred E--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Cce-eecC-----CCHHHHHHHHHHHHhCh
Confidence 5 553 33544 9999999999999977643 223333 3 433 2222 27799999999999875
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.82 E-value=3e-06 Score=82.39 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=87.0
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHhC--CCceEEEECCCCCCCccc--cccccCCcEEEecccChHH---hhccCC
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEAS--GKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQVE---ILSHRS 350 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~~---ll~~~~ 350 (473)
++.+++.+|+... ...+.+...+..+... +.++++.-.......... .....++|+.+.+++|+.+ ++..++
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad 257 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAAD 257 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCC
Confidence 3456667787654 2345544555555443 445555443221000000 1113467899999998644 555677
Q ss_pred cceeEe----------ccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHH
Q 047833 351 VSVFLS----------HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 351 v~~~I~----------HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll 420 (473)
+ +|. -|.-+++.||+++|+|+|+.+..+ ....+... ..|..... -+.+++.++|.+++
T Consensus 258 i--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i~~~~ 325 (355)
T cd03799 258 L--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLLVPP-----GDPEALADAIERLL 325 (355)
T ss_pred E--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEEeCC-----CCHHHHHHHHHHHH
Confidence 5 554 233468999999999999876532 22344423 47777654 47899999999999
Q ss_pred cCChhhHHHHHHHHHH
Q 047833 421 NETEKGIELRKNAYEV 436 (473)
Q Consensus 421 ~~~~~~~~~~~~a~~l 436 (473)
+++...+.+.++|++.
T Consensus 326 ~~~~~~~~~~~~a~~~ 341 (355)
T cd03799 326 DDPELRREMGEAGRAR 341 (355)
T ss_pred hCHHHHHHHHHHHHHH
Confidence 9984444455555443
No 74
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=4.9e-06 Score=79.12 Aligned_cols=324 Identities=17% Similarity=0.193 Sum_probs=187.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEc-CCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTN--KYTITFVN-TPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~r--Gh~Vt~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
.+-+-.-|.|-++-.++|.++|++ + ++.|++-| ++.-.+.+.+... ..+....+|.| .
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~-~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D---------------~- 111 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRE-RFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLD---------------L- 111 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHH-hCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcC---------------c-
Confidence 344445688999999999999999 6 88888877 4444555554333 33455555543 1
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHH--HHHHHhCCceEEEecchHHHHHHHhhhhccC
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCK--EIAQEYGIFHAIFIGGGGFGFACYYSLWVNL 162 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
...+...++.+ +||++|.--.-.|.. .-++..|+|.+.++-=
T Consensus 112 --------------~~~v~rFl~~~-------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR--------------- 155 (419)
T COG1519 112 --------------PIAVRRFLRKW-------RPKLLIIMETELWPNLINELKRRGIPLVLVNAR--------------- 155 (419)
T ss_pred --------------hHHHHHHHHhc-------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee---------------
Confidence 12346778888 999866654445544 5667899999997420
Q ss_pred CCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhhcCCCe
Q 047833 163 PHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRKFGRSV 242 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 242 (473)
+..++.-.+ .....+.. ..+.+.+.++..+-.+-+ .+..--.+++
T Consensus 156 --------------LS~rS~~~y-------------~k~~~~~~---~~~~~i~li~aQse~D~~-----Rf~~LGa~~v 200 (419)
T COG1519 156 --------------LSDRSFARY-------------AKLKFLAR---LLFKNIDLILAQSEEDAQ-----RFRSLGAKPV 200 (419)
T ss_pred --------------echhhhHHH-------------HHHHHHHH---HHHHhcceeeecCHHHHH-----HHHhcCCcce
Confidence 000000000 00111111 122334455555432111 1111112446
Q ss_pred EEecccCCCccCCCCCCCCCCCchh---hHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCC--CceEEEECC
Q 047833 243 WPIGPVLLSTENRGGAGKEYGISTE---LCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASG--KNFIWVVRP 317 (473)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~ 317 (473)
..+|-+-.+... ...+.. .+...++.. + .+.|..+| .....+.+.....++.+.. ..+||+=.-
T Consensus 201 ~v~GNlKfd~~~-------~~~~~~~~~~~r~~l~~~--r-~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRH 269 (419)
T COG1519 201 VVTGNLKFDIEP-------PPQLAAELAALRRQLGGH--R-PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRH 269 (419)
T ss_pred EEecceeecCCC-------ChhhHHHHHHHHHhcCCC--C-ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCC
Confidence 777766544311 011122 223333221 2 35555555 3234454555555655532 344444321
Q ss_pred CCCCCcc---------------c--cccccCCcEEEecccChHHhh-ccCCccee-----EeccCcchHHHHHhhCCcEE
Q 047833 318 PIGFDIN---------------S--EIKCSGQGLVVHKWAPQVEIL-SHRSVSVF-----LSHCGWNSVLEALSHGVPII 374 (473)
Q Consensus 318 ~~~~~~~---------------~--~~~~~~~nv~~~~~vp~~~ll-~~~~v~~~-----I~HGG~gt~~eal~~GvP~l 374 (473)
. |.-+. + .......+|.+.|-+--+-++ .-+++ +| |-+||+| ..|.+++|+|+|
T Consensus 270 p-ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi 346 (419)
T COG1519 270 P-ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVI 346 (419)
T ss_pred h-hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEE
Confidence 1 11100 0 112233478888887754444 34444 44 5699997 679999999999
Q ss_pred eccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHh
Q 047833 375 GWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNA 443 (473)
Q Consensus 375 ~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~ 443 (473)
.=|...-|.+.++++.+. |.|+.++. .+.|.+++..+++|++..+.|.+++.++-+..+.+
T Consensus 347 ~Gp~~~Nf~ei~~~l~~~-ga~~~v~~-------~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ga 407 (419)
T COG1519 347 FGPYTFNFSDIAERLLQA-GAGLQVED-------ADLLAKAVELLLADEDKREAYGRAGLEFLAQNRGA 407 (419)
T ss_pred eCCccccHHHHHHHHHhc-CCeEEECC-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999 99999852 67799999999998766667777777777776543
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.71 E-value=3.8e-06 Score=82.18 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=68.5
Q ss_pred cCCcEEEecccChHHh---hccCCcceeEec----------cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcce
Q 047833 330 SGQGLVVHKWAPQVEI---LSHRSVSVFLSH----------CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVC 396 (473)
Q Consensus 330 ~~~nv~~~~~vp~~~l---l~~~~v~~~I~H----------GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g 396 (473)
...++.+.+++|+.++ +..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 3678999999986544 777775 5532 2346899999999999987654 355566655 778
Q ss_pred EEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 047833 397 VEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVR 437 (473)
Q Consensus 397 ~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~ 437 (473)
..++. -+.+++.++|.++++|++..+++.+++++..
T Consensus 316 ~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 351 (367)
T cd05844 316 LLVPE-----GDVAALAAALGRLLADPDLRARMGAAGRRRV 351 (367)
T ss_pred EEECC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 77754 4678999999999999844445555555443
No 76
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.66 E-value=5.9e-05 Score=73.03 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=80.1
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHh--CCCceEEEECCCCCCCccc---c-ccccCCcEEEecccC-hHHhhccCC
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEA--SGKNFIWVVRPPIGFDINS---E-IKCSGQGLVVHKWAP-QVEILSHRS 350 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~---~-~~~~~~nv~~~~~vp-~~~ll~~~~ 350 (473)
+..+++..|+.... ..+.+...+..+.. .+.+++++-... ...... . ......++.+.+... -..+++.++
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 270 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGP-DRANLELLALKELGLEDKVILLGERSDVPALLNALD 270 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCc-chhHHHHHHHHhcCCCceEEEccccccHHHHHHhCC
Confidence 34566778887652 23333333333333 345655553222 111101 1 112345677666544 456777777
Q ss_pred cceeEeccC----cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhh
Q 047833 351 VSVFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKG 426 (473)
Q Consensus 351 v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~ 426 (473)
+ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..++. -+.+++.++|.+++++++..
T Consensus 271 i--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~-----~~~~~l~~~i~~l~~~~~~~ 336 (365)
T cd03807 271 V--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP-----GDPEALAEAIEALLADPALR 336 (365)
T ss_pred E--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----CCHHHHHHHHHHHHhChHHH
Confidence 5 665443 4799999999999998543 344554543 4555543 36889999999999987333
Q ss_pred HHHHHHHH
Q 047833 427 IELRKNAY 434 (473)
Q Consensus 427 ~~~~~~a~ 434 (473)
+.+.++++
T Consensus 337 ~~~~~~~~ 344 (365)
T cd03807 337 QALGEAAR 344 (365)
T ss_pred HHHHHHHH
Confidence 33344433
No 77
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.62 E-value=1.8e-05 Score=77.02 Aligned_cols=312 Identities=17% Similarity=0.083 Sum_probs=161.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh--------hhhccCCCCCCceEEecCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLR--------KLKSSVPQNSSINLLEIPFDSIDHNLPPCTE 78 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (473)
||+++. |++-.+.=+.++.++|+++.+.++.++.+....+ .++. .++... + .......
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~-----~~~~~~--~------~~~~~~~ 67 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK-----DGFDID--E------KIEILLD 67 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH-----cCCCCC--C------ccccccC
Confidence 566555 6888888888899999872367877776654421 1222 222111 1 0000000
Q ss_pred CCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCc---chHHHHHHHhCCceEEEecchHHHHHHH
Q 047833 79 NTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFF---GWCKEIAQEYGIFHAIFIGGGGFGFACY 155 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~---~~~~~~A~~~giP~v~~~~~~~~~~~~~ 155 (473)
..+. ..+...+..+...+.+++++. +||+|++-.-. .+++.+|..+|||++-+.-.--+
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~~~~~~~-------~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs----- 129 (365)
T TIGR03568 68 SDSN------AGMAKSMGLTIIGFSDAFERL-------KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVT----- 129 (365)
T ss_pred CCCC------CCHHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccC-----
Confidence 0000 122333344556678888998 99998876422 26679999999999976422100
Q ss_pred hhhhccCCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHH-HHHHhccccCCcEEEEcCccccchhHHHHH
Q 047833 156 YSLWVNLPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAI-LQKVLPQWMNADGILVNTVEELDKIGLMYF 234 (473)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (473)
.+.+ ++..+. +.... ...+..+- .+-+.+
T Consensus 130 -------------------~~~~--------------------eE~~r~~i~~la------~l~f~~t~-----~~~~~L 159 (365)
T TIGR03568 130 -------------------EGAI--------------------DESIRHAITKLS------HLHFVATE-----EYRQRV 159 (365)
T ss_pred -------------------CCCc--------------------hHHHHHHHHHHH------hhccCCCH-----HHHHHH
Confidence 0000 000000 00000 01111111 111111
Q ss_pred -Hhhc-CCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcc--c-CCHHHHHHHHHHHHhCCC
Q 047833 235 -KRKF-GRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQN--T-IATSQMMQLAMALEASGK 309 (473)
Q Consensus 235 -~~~~-~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~--~-~~~~~~~~~~~al~~~~~ 309 (473)
++.. +.++..+|....+.-... .....+.+.+.+.-.++++.|+|++=... . ...+.+..+++++...+.
T Consensus 160 ~~eg~~~~~i~~tG~~~iD~l~~~-----~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~ 234 (365)
T TIGR03568 160 IQMGEDPDRVFNVGSPGLDNILSL-----DLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNK 234 (365)
T ss_pred HHcCCCCCcEEEECCcHHHHHHhh-----hccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhcc
Confidence 1111 235666675443321000 00112333333332223468888885543 3 446788899999988776
Q ss_pred ceEEEECCCCCCC--ccc--ccccc-CCcEEEecccC---hHHhhccCCcceeEeccCcchHHHHHhhCCcEEecccccc
Q 047833 310 NFIWVVRPPIGFD--INS--EIKCS-GQGLVVHKWAP---QVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAE 381 (473)
Q Consensus 310 ~~i~~~~~~~~~~--~~~--~~~~~-~~nv~~~~~vp---~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~D 381 (473)
+++++........ ... ..... .+|+.+.+.++ ...++++++ ++|+-++.|- .||...|+|+|.+- +
T Consensus 235 ~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~ 308 (365)
T TIGR03568 235 NYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---T 308 (365)
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---C
Confidence 6666653220001 011 11111 46788887665 566777877 5888775555 99999999999773 3
Q ss_pred chhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 382 QFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 382 Q~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
.+ .-+ +. |-.+.+ -..++++|.+++.++++
T Consensus 309 R~---e~~-~~-g~nvl~-----vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 309 RQ---KGR-LR-ADSVID-----VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred Cc---hhh-hh-cCeEEE-----eCCCHHHHHHHHHHHhC
Confidence 22 111 23 433331 13577999999999554
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.62 E-value=1.2e-05 Score=78.57 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=85.1
Q ss_pred EEEEeeCCcccCCHHHHHHHHHHHHhC--CCceEEEECCCCCCCccc--cccccCCcEEEecccCh--HH---hhccCCc
Q 047833 281 VLYVSFGSQNTIATSQMMQLAMALEAS--GKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQ--VE---ILSHRSV 351 (473)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~--~~---ll~~~~v 351 (473)
.+++..|.+.......+..+++++... +.+++++-.......... .....+++|.+.+|+++ .. .++.+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~ 260 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSA 260 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcE
Confidence 456677776432222344556666553 345555443221000001 12234678999998753 33 3334554
Q ss_pred ceeEec----cCcchHHHHHhhCCcEEecc-ccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCCh--
Q 047833 352 SVFLSH----CGWNSVLEALSHGVPIIGWP-LAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETE-- 424 (473)
Q Consensus 352 ~~~I~H----GG~gt~~eal~~GvP~l~~P-~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~-- 424 (473)
+|.. |--.++.||+++|+|+|+.- ..+ ....+++. ..|..++. -+.+++.++|.++++|++
T Consensus 261 --~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~l~~~~~~~ 328 (359)
T PRK09922 261 --LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-----GNIDEFVGKLNKVISGEVKY 328 (359)
T ss_pred --EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-----CCHHHHHHHHHHHHhCcccC
Confidence 5543 22469999999999999875 322 22344433 45766654 588999999999999994
Q ss_pred hhHHHHHHHHHHHHHH
Q 047833 425 KGIELRKNAYEVREII 440 (473)
Q Consensus 425 ~~~~~~~~a~~l~~~~ 440 (473)
..+..+++++++..+.
T Consensus 329 ~~~~~~~~~~~~~~~~ 344 (359)
T PRK09922 329 QHDAIPNSIERFYEVL 344 (359)
T ss_pred CHHHHHHHHHHhhHHH
Confidence 2344555555555543
No 79
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.60 E-value=5.4e-06 Score=79.30 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=95.4
Q ss_pred CeEEEEeeCCcccCCHHHHHHHHHHHHhCC---CceEEEECCCCCCCccc-cccc-cCCcEEEecccChHHhhccCCcce
Q 047833 279 TSVLYVSFGSQNTIATSQMMQLAMALEASG---KNFIWVVRPPIGFDINS-EIKC-SGQGLVVHKWAPQVEILSHRSVSV 353 (473)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~---~~~i~~~~~~~~~~~~~-~~~~-~~~nv~~~~~vp~~~ll~~~~v~~ 353 (473)
+++|.+--||-...-...+..++++..... ..|++..... .+. .... ....+.+.+ .-.+++..++ +
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~----~~~i~~~~~~~~~~~~~~--~~~~~m~~aD--l 238 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK----GKDLKEIYGDISEFEISY--DTHKALLEAE--F 238 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc----HHHHHHHHhcCCCcEEec--cHHHHHHhhh--H
Confidence 368888889886533355554555554432 2333332211 111 1111 001233322 3356777877 5
Q ss_pred eEeccCcchHHHHHhhCCcEEeccc--cccchhhHHHHH---HhhcceEEE-------------ecCCCCccCHHHHHHH
Q 047833 354 FLSHCGWNSVLEALSHGVPIIGWPL--AAEQFYNSKLLE---EEIGVCVEV-------------ARGKSSEVLKKDIAAK 415 (473)
Q Consensus 354 ~I~HGG~gt~~eal~~GvP~l~~P~--~~DQ~~nA~~v~---~~lG~g~~l-------------~~~~~~~~~~~~l~~~ 415 (473)
+|+-.|..|+ |+..+|+|||+ +. ..-|+.||+++. .. |++-.+ .. .+.|++.|.+.
T Consensus 239 al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ---~~~t~~~la~~ 312 (347)
T PRK14089 239 AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQ---EFVTVENLLKA 312 (347)
T ss_pred HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhc---ccCCHHHHHHH
Confidence 9999999999 99999999988 43 567999999998 33 544433 33 57889999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Q 047833 416 IELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLN 463 (473)
Q Consensus 416 i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (473)
+.+. ... .+++...++.+.+ .. |++.++.+.+++
T Consensus 313 i~~~-~~~----~~~~~~~~l~~~l--------~~-~a~~~~A~~i~~ 346 (347)
T PRK14089 313 YKEM-DRE----KFFKKSKELREYL--------KH-GSAKNVAKILKE 346 (347)
T ss_pred HHHH-HHH----HHHHHHHHHHHHh--------cC-CHHHHHHHHHhc
Confidence 9872 212 4666666666666 33 556776665543
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.59 E-value=5e-05 Score=73.88 Aligned_cols=131 Identities=9% Similarity=0.073 Sum_probs=75.3
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECCCCCCCccc--cccccCCcEEEecccC-hHHhhccCCcc
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAP-QVEILSHRSVS 352 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp-~~~ll~~~~v~ 352 (473)
+..+++..|+... ...+.+...+..+.. .+.+++++-.......... .......++.+.++.. ...++..+++
T Consensus 187 ~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~- 265 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADL- 265 (360)
T ss_pred CCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhce-
Confidence 3467777787654 223333333333322 2466666543221000001 1112346788888775 3567777775
Q ss_pred eeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 353 VFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 353 ~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+|.- |..+++.||+.+|+|+|+. |...+...+++ .|..+. .-+.+++.++|.++++++
T Consensus 266 -~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~-----~~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 266 -FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVP-----ISDPEALANKIDEILKMS 327 (360)
T ss_pred -EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeC-----CCCHHHHHHHHHHHHhCC
Confidence 4443 2246899999999999975 44455555553 333343 247789999999999543
No 81
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.56 E-value=0.00015 Score=77.89 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=66.4
Q ss_pred CCcEEEecccChHHh---hccCC--cceeEec---cCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEec
Q 047833 331 GQGLVVHKWAPQVEI---LSHRS--VSVFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVAR 401 (473)
Q Consensus 331 ~~nv~~~~~vp~~~l---l~~~~--v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~ 401 (473)
.++|.+.+++++.++ +..++ .++||+- =|+ .++.||+++|+|+|+....+ ....++.- .-|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 467888888887654 33331 1246653 354 48899999999999986533 33333322 45776654
Q ss_pred CCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 047833 402 GKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREI 439 (473)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~ 439 (473)
-+.+.|+++|.++++++...+.+.+++.+..++
T Consensus 622 -----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~ 654 (1050)
T TIGR02468 622 -----HDQQAIADALLKLVADKQLWAECRQNGLKNIHL 654 (1050)
T ss_pred -----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 578899999999999985555677777665543
No 82
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.56 E-value=5.6e-05 Score=76.14 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=105.8
Q ss_pred cchhHHHHHHhhcCCCeEEec-ccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHH
Q 047833 226 LDKIGLMYFKRKFGRSVWPIG-PVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMAL 304 (473)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 304 (473)
+|.+++. ..+-++.||| |+...... ....++..+-+.-.+++++|-+--||-...-...+..++++.
T Consensus 371 FE~~~y~----~~gv~v~yVGHPL~d~i~~--------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa 438 (608)
T PRK01021 371 FEQNLFK----DSPLRTVYLGHPLVETISS--------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAF 438 (608)
T ss_pred cCHHHHH----hcCCCeEEECCcHHhhccc--------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 5666543 3457899999 44433210 122333444444444567898888887653344555566666
Q ss_pred H--h--CCCceEEEECCCCCCCccc-cccccCC---cEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEec
Q 047833 305 E--A--SGKNFIWVVRPPIGFDINS-EIKCSGQ---GLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGW 376 (473)
Q Consensus 305 ~--~--~~~~~i~~~~~~~~~~~~~-~~~~~~~---nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 376 (473)
+ . .+.+|++...+.. ..+. ....... .+.+..--...++++.|++ ++++. | ..++|+...|+|||++
T Consensus 439 ~~~~l~~~l~fvvp~a~~~--~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~-aLaaS-G-TaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 439 LASSLASTHQLLVSSANPK--YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC-ALAKC-G-TIVLETALNQTPTIVT 513 (608)
T ss_pred HHHHhccCeEEEEecCchh--hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe-eeecC-C-HHHHHHHHhCCCEEEE
Confidence 5 3 2456766543321 1111 1101011 1222211012577888885 44444 3 3478999999999884
Q ss_pred -cccccchhhHHHHHH-----------hh--cceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 047833 377 -PLAAEQFYNSKLLEE-----------EI--GVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREII 440 (473)
Q Consensus 377 -P~~~DQ~~nA~~v~~-----------~l--G~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~ 440 (473)
-...=-+..|+++.+ .+ .+-.++- +.-.+.+++.|.+++ ++|.|++..+++++..+++.+++
T Consensus 514 YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEll-qgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 514 CQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFI-GGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred EecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhc-CCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 233334455666664 00 1111222 001478999999997 88888744556666666666666
No 83
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.55 E-value=4.3e-07 Score=72.69 Aligned_cols=116 Identities=23% Similarity=0.242 Sum_probs=79.8
Q ss_pred eEEEEeeCCcccCC---HHHHHHHHHHHHhCC-CceEEEECCCC-CC-Cccc-cccccCCcEEEecccCh-HHhhccCCc
Q 047833 280 SVLYVSFGSQNTIA---TSQMMQLAMALEASG-KNFIWVVRPPI-GF-DINS-EIKCSGQGLVVHKWAPQ-VEILSHRSV 351 (473)
Q Consensus 280 ~~V~vs~GS~~~~~---~~~~~~~~~al~~~~-~~~i~~~~~~~-~~-~~~~-~~~~~~~nv~~~~~vp~-~~ll~~~~v 351 (473)
..+||+-||..-.+ --...+....|.+.| .+.|+..|.+. .. ++.. ......-.+...+|-|- .+.++.++
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Ad- 82 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSAD- 82 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhcc-
Confidence 37999999987311 111234566677777 48888898662 11 1111 11233334666778884 55565666
Q ss_pred ceeEeccCcchHHHHHhhCCcEEeccc----cccchhhHHHHHHhhcceEE
Q 047833 352 SVFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLLEEEIGVCVE 398 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~GvP~l~~P~----~~DQ~~nA~~v~~~lG~g~~ 398 (473)
+||+|+|.||++|.|..|+|.|+++- ...|-+.|..+++. |-=..
T Consensus 83 -lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~ 131 (170)
T KOG3349|consen 83 -LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYY 131 (170)
T ss_pred -EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEE
Confidence 59999999999999999999999995 56899999999977 65433
No 84
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.54 E-value=0.0002 Score=70.39 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=81.9
Q ss_pred CeEEEEeeCCcccC-CHHHHHH-HHHHHHhC-----CCceEEEECCCCCCCccc--cccccCCcEEEecccC-hHHhhcc
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQ-LAMALEAS-----GKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAP-QVEILSH 348 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~-~~~al~~~-----~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp-~~~ll~~ 348 (473)
+..+++..|..... ..+.+-. +...+.+. +.+++++-.......... .......++.+.++.. -..+++.
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 272 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQA 272 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh
Confidence 44677788887652 2333333 33323322 345444432210000001 1112235566655543 4677888
Q ss_pred CCcceeEe--c--cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCCh
Q 047833 349 RSVSVFLS--H--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETE 424 (473)
Q Consensus 349 ~~v~~~I~--H--GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~ 424 (473)
+++ +|. + |--.++.||+++|+|+|+.... .+...++.. ..|..++. -+.++++++|.++++++.
T Consensus 273 adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~-----~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 273 LDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP-----GDAVALARALQPYVSDPA 340 (374)
T ss_pred cCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-----CCHHHHHHHHHHHHhCHH
Confidence 775 552 2 3346999999999999997653 344455433 45766643 467899999999999883
Q ss_pred hhHHHHHHHHHH
Q 047833 425 KGIELRKNAYEV 436 (473)
Q Consensus 425 ~~~~~~~~a~~l 436 (473)
..+.+.++|++.
T Consensus 341 ~~~~~~~~a~~~ 352 (374)
T TIGR03088 341 ARRAHGAAGRAR 352 (374)
T ss_pred HHHHHHHHHHHH
Confidence 333444555443
No 85
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.52 E-value=6.4e-05 Score=72.38 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=75.8
Q ss_pred EEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCc-ccccc-c--cCCcEEEecccChH---HhhccCCccee
Q 047833 282 LYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDI-NSEIK-C--SGQGLVVHKWAPQV---EILSHRSVSVF 354 (473)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~-~~~~~-~--~~~nv~~~~~vp~~---~ll~~~~v~~~ 354 (473)
+.+..|...... ....++++++..+.++++.-.... ... ..... . ..+++.+.+++++. .+++.+++-++
T Consensus 173 ~i~~~Gr~~~~K--g~~~li~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ 249 (335)
T cd03802 173 YLLFLGRISPEK--GPHLAIRAARRAGIPLKLAGPVSD-PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLF 249 (335)
T ss_pred EEEEEEeecccc--CHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEe
Confidence 445557764322 233466777778888776554321 110 01111 1 35789999999975 45777776222
Q ss_pred Ee--ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhc-ceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 355 LS--HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIG-VCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 355 I~--HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG-~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
-+ +-|+ .++.||+++|+|+|+.... .....+. . | .|...+ . .+++.++|.++++..
T Consensus 250 ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~-~-~~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 250 PILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVE-D-GVTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred CCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhee-C-CCcEEEeC----C---HHHHHHHHHHHhccH
Confidence 12 2344 4899999999999987653 3333444 4 4 455442 2 889999999987654
No 86
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.51 E-value=0.00016 Score=70.45 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=73.5
Q ss_pred EEeeCCcccCCHHHHHHHHHHHHhC--CCceEEEECCCCCCCccc--c-ccccCCcEEEecccChHH---hhccCCccee
Q 047833 283 YVSFGSQNTIATSQMMQLAMALEAS--GKNFIWVVRPPIGFDINS--E-IKCSGQGLVVHKWAPQVE---ILSHRSVSVF 354 (473)
Q Consensus 283 ~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~--~-~~~~~~nv~~~~~vp~~~---ll~~~~v~~~ 354 (473)
++..|++.... -+..+++++... +.+++++-.......... . .....++|.+.+++++.+ ++..+++ +
T Consensus 196 i~~~G~~~~~K--g~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~ 271 (363)
T cd04955 196 YLLVGRIVPEN--NIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL--F 271 (363)
T ss_pred EEEEecccccC--CHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--E
Confidence 44568776422 123344555543 456555543221111111 1 223457899999999764 4555554 5
Q ss_pred Eecc----Cc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHH
Q 047833 355 LSHC----GW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIEL 429 (473)
Q Consensus 355 I~HG----G~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 429 (473)
|-+. |. +++.||+++|+|+|+....+. ...++ .-|...+. . +.+.++|.+++++++..+.+
T Consensus 272 v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~---~~g~~~~~---~----~~l~~~i~~l~~~~~~~~~~ 337 (363)
T cd04955 272 YLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLG---DKAIYFKV---G----DDLASLLEELEADPEEVSAM 337 (363)
T ss_pred EeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeec---CCeeEecC---c----hHHHHHHHHHHhCHHHHHHH
Confidence 4433 33 478999999999998765422 12222 12323322 1 12999999999997333334
Q ss_pred HHHHHH
Q 047833 430 RKNAYE 435 (473)
Q Consensus 430 ~~~a~~ 435 (473)
.+++++
T Consensus 338 ~~~~~~ 343 (363)
T cd04955 338 AKAARE 343 (363)
T ss_pred HHHHHH
Confidence 444433
No 87
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.49 E-value=0.00038 Score=69.91 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=64.7
Q ss_pred cCCcEEEecccChHHh---hccC--CcceeEecc---C-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEe
Q 047833 330 SGQGLVVHKWAPQVEI---LSHR--SVSVFLSHC---G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVA 400 (473)
Q Consensus 330 ~~~nv~~~~~vp~~~l---l~~~--~v~~~I~HG---G-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~ 400 (473)
..++|.+.+++++.++ ++.+ +.++||... | -.++.||+++|+|+|+.... .....+... .-|..++
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~ 389 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVD 389 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeC
Confidence 3567888888887665 4433 123577543 4 35999999999999988643 344445433 4577775
Q ss_pred cCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 047833 401 RGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYE 435 (473)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 435 (473)
. -+.++++++|.++++|++..+.+.+++++
T Consensus 390 ~-----~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 390 V-----LDLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred C-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4 47789999999999998444445555544
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.46 E-value=3.6e-05 Score=74.83 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=84.1
Q ss_pred EEEEeeCCcccC-CHHHHHHHHHHHHhCC--CceEEEECCCCCCCccc-c---ccccCCcEEEecccChH---HhhccCC
Q 047833 281 VLYVSFGSQNTI-ATSQMMQLAMALEASG--KNFIWVVRPPIGFDINS-E---IKCSGQGLVVHKWAPQV---EILSHRS 350 (473)
Q Consensus 281 ~V~vs~GS~~~~-~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~-~---~~~~~~nv~~~~~vp~~---~ll~~~~ 350 (473)
.+++..|+.... ..+.+...+..+...+ .++++.-... ...... . .....+++.+.+++|+. .++..++
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 274 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRG-WLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR 274 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCc-cccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh
Confidence 455667877643 3455444444444433 5555544322 111111 1 23467899999999875 4566777
Q ss_pred cceeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhh
Q 047833 351 VSVFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKG 426 (473)
Q Consensus 351 v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~ 426 (473)
+ +|.- |..+++.||+++|+|+|+....+ ....+. ..|..+.. -+.+++.++|.++++|++..
T Consensus 275 ~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~-----~~~~~~~~~i~~l~~~~~~~ 340 (365)
T cd03809 275 A--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDP-----LDPEALAAAIERLLEDPALR 340 (365)
T ss_pred h--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCC-----CCHHHHHHHHHHHhcCHHHH
Confidence 5 4322 33468999999999999865422 222222 23444443 37899999999999998444
Q ss_pred HHHHHHHHHHHH
Q 047833 427 IELRKNAYEVRE 438 (473)
Q Consensus 427 ~~~~~~a~~l~~ 438 (473)
+.+.+++++..+
T Consensus 341 ~~~~~~~~~~~~ 352 (365)
T cd03809 341 EELRERGLARAK 352 (365)
T ss_pred HHHHHHHHHHHH
Confidence 445555554333
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.41 E-value=0.00024 Score=69.14 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=78.8
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECCCCCCCcc-c-cccccCCcEEEecccC-hHHhhccCCcc
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRPPIGFDIN-S-EIKCSGQGLVVHKWAP-QVEILSHRSVS 352 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~-~-~~~~~~~nv~~~~~vp-~~~ll~~~~v~ 352 (473)
+..+++..|++.. ...+.+...+..+.. .+.+++++-......... . ......+++.+.++.. -..++..+++
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi- 269 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDV- 269 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCE-
Confidence 4456677787764 334444444444443 245555554222100000 0 1223457788888754 3667777775
Q ss_pred eeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 353 VFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 353 ~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+|+- |-..++.||+++|+|+|+....+ ....+. . +.|..... -+.++++++|.++++|+
T Consensus 270 -~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~~-----~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 270 -FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSLD-----ESPEIWAEEILKLKSED 332 (358)
T ss_pred -EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeCC-----CCHHHHHHHHHHHHhCc
Confidence 4432 44578999999999999866543 333344 4 55544432 35799999999999999
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.0014 Score=68.78 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=82.8
Q ss_pred eEEEEeeCCcccC-CHHH-HHHHHHHHHh-CCCceEEEECCCCCCCccc--cccccCCcEEEecccCh-HHhhccCCcce
Q 047833 280 SVLYVSFGSQNTI-ATSQ-MMQLAMALEA-SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQ-VEILSHRSVSV 353 (473)
Q Consensus 280 ~~V~vs~GS~~~~-~~~~-~~~~~~al~~-~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~-~~ll~~~~v~~ 353 (473)
..+++..|.+... ..+. +..+...+.. .+.+++++-+......... ......++|.+.+|.++ ..++..+++
T Consensus 517 ~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv-- 594 (694)
T PRK15179 517 RFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNA-- 594 (694)
T ss_pred CeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCE--
Confidence 3455666776542 2332 3333333333 3455555543221000011 12233578998888873 556777775
Q ss_pred eEe---ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHH
Q 047833 354 FLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIEL 429 (473)
Q Consensus 354 ~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 429 (473)
||. +.|. +++.||+.+|+|+|+.... .....+.+- .-|+.++. ...+.+++.+++.+++.+...-..+
T Consensus 595 ~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~d~~~~~La~aL~~ll~~l~~~~~l 666 (694)
T PRK15179 595 FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---DTVTAPDVAEALARIHDMCAADPGI 666 (694)
T ss_pred EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---CCCChHHHHHHHHHHHhChhccHHH
Confidence 553 5565 6889999999999997653 344455533 35888876 5566667777777766543111156
Q ss_pred HHHHHHHH
Q 047833 430 RKNAYEVR 437 (473)
Q Consensus 430 ~~~a~~l~ 437 (473)
++++++..
T Consensus 667 ~~~ar~~a 674 (694)
T PRK15179 667 ARKAADWA 674 (694)
T ss_pred HHHHHHHH
Confidence 66655443
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.32 E-value=0.0019 Score=63.40 Aligned_cols=75 Identities=12% Similarity=0.244 Sum_probs=51.3
Q ss_pred CcEEEec-ccChHHh---hccCCcceeEe-c-----cCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEe
Q 047833 332 QGLVVHK-WAPQVEI---LSHRSVSVFLS-H-----CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVA 400 (473)
Q Consensus 332 ~nv~~~~-~vp~~~l---l~~~~v~~~I~-H-----GG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~ 400 (473)
+|+.+.. |+|+.++ ++.+++ +|. + -|. +++.||+++|+|+|+... ......+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566655 7887655 777775 552 1 122 479999999999999753 2355566644 5787762
Q ss_pred cCCCCccCHHHHHHHHHHHH
Q 047833 401 RGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll 420 (473)
+.++|+++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3688999998875
No 92
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.31 E-value=0.0026 Score=62.65 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=81.4
Q ss_pred EEEEeeCCcccCCHHHHHHHHHHHHh--CCCceEEEECCCCCCCc-cc-cc--cc---cCCcEEE-ecccChH---Hhhc
Q 047833 281 VLYVSFGSQNTIATSQMMQLAMALEA--SGKNFIWVVRPPIGFDI-NS-EI--KC---SGQGLVV-HKWAPQV---EILS 347 (473)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~-~~-~~--~~---~~~nv~~-~~~vp~~---~ll~ 347 (473)
.+++..|..... .-+..+++++.. .+.+++++.+....... .. .. .. ...++.. .+++++. .++.
T Consensus 202 ~~i~~~Grl~~~--Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 279 (388)
T TIGR02149 202 PYILFVGRITRQ--KGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS 279 (388)
T ss_pred eEEEEEcccccc--cCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH
Confidence 456666777642 122334444444 25666666543311000 00 00 01 1234553 4577754 4566
Q ss_pred cCCcceeEec---cC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccC----HHHHHHHHHHH
Q 047833 348 HRSVSVFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVL----KKDIAAKIELV 419 (473)
Q Consensus 348 ~~~v~~~I~H---GG-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~----~~~l~~~i~~l 419 (473)
.+++ +|.- -| ..++.||+++|+|+|+... ......++.. +.|..++. ...+ .+.+.++|.++
T Consensus 280 ~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~---~~~~~~~~~~~l~~~i~~l 349 (388)
T TIGR02149 280 NAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP---DNSDADGFQAELAKAINIL 349 (388)
T ss_pred hCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC---CCCcccchHHHHHHHHHHH
Confidence 7775 5542 23 3577999999999998754 3455556644 56888765 2221 27899999999
Q ss_pred HcCChhhHHHHHHHHHH
Q 047833 420 MNETEKGIELRKNAYEV 436 (473)
Q Consensus 420 l~~~~~~~~~~~~a~~l 436 (473)
++|++..+.+.++|++.
T Consensus 350 ~~~~~~~~~~~~~a~~~ 366 (388)
T TIGR02149 350 LADPELAKKMGIAGRKR 366 (388)
T ss_pred HhCHHHHHHHHHHHHHH
Confidence 99984444555665553
No 93
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.23 E-value=0.00014 Score=70.83 Aligned_cols=136 Identities=15% Similarity=0.222 Sum_probs=86.3
Q ss_pred EEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChH---HhhccCCcceeE--e
Q 047833 282 LYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQV---EILSHRSVSVFL--S 356 (473)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~---~ll~~~~v~~~I--~ 356 (473)
.++..|++... .....+++++...+.+++++-... ..........+||.+.+++|+. .+++.+++ +| +
T Consensus 197 ~il~~G~~~~~--K~~~~li~a~~~~~~~l~ivG~g~---~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps 269 (351)
T cd03804 197 YYLSVGRLVPY--KRIDLAIEAFNKLGKRLVVIGDGP---ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA--FLFPA 269 (351)
T ss_pred EEEEEEcCccc--cChHHHHHHHHHCCCcEEEEECCh---hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE--EEECC
Confidence 34556776642 224446677777677766655322 1111222456899999999974 46777775 44 3
Q ss_pred ccCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC-hhhHHHHHHHH
Q 047833 357 HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET-EKGIELRKNAY 434 (473)
Q Consensus 357 HGG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~a~ 434 (473)
.-|.| ++.||+.+|+|+|+....+ ....+.+. +.|..++. -+.++++++|.++++++ ..++.++++++
T Consensus 270 ~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 270 EEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRAHAE 339 (351)
T ss_pred cCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 34443 6789999999999986533 33344544 57877754 46788999999999987 23334444443
No 94
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.22 E-value=0.00036 Score=67.30 Aligned_cols=194 Identities=16% Similarity=0.194 Sum_probs=103.3
Q ss_pred cchhHHHHHHhhcCCCeEEec-ccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHH
Q 047833 226 LDKIGLMYFKRKFGRSVWPIG-PVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMAL 304 (473)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 304 (473)
+|++++ ...+-++.||| |+...... ...+....+.+ -.+++++|.+--||-..--...+..++++.
T Consensus 143 FE~~~y----~~~g~~~~~VGHPl~d~~~~--------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa 209 (373)
T PF02684_consen 143 FEPEFY----KKHGVPVTYVGHPLLDEVKP--------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAA 209 (373)
T ss_pred ccHHHH----hccCCCeEEECCcchhhhcc--------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 455543 33446899999 44433311 11233333333 334577899988887543333334444443
Q ss_pred Hh-----CCCceEEEECCCCCCCc--cccccccCCcEEEe-cccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEec
Q 047833 305 EA-----SGKNFIWVVRPPIGFDI--NSEIKCSGQGLVVH-KWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGW 376 (473)
Q Consensus 305 ~~-----~~~~~i~~~~~~~~~~~--~~~~~~~~~nv~~~-~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 376 (473)
+. .+.+|++...... ... .........++.+. ..-.-.+++..+++ ++++.| ..|+|+...|+|||++
T Consensus 210 ~~l~~~~p~l~fvvp~a~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~-al~~SG--TaTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 210 KLLKKQRPDLQFVVPVAPEV-HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA-ALAASG--TATLEAALLGVPMVVA 285 (373)
T ss_pred HHHHHhCCCeEEEEecCCHH-HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc-hhhcCC--HHHHHHHHhCCCEEEE
Confidence 32 4567777664331 000 01001112222221 22234556777776 555555 3578999999999885
Q ss_pred c-ccccchhhHHHHHHhh-----------cceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHh
Q 047833 377 P-LAAEQFYNSKLLEEEI-----------GVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNA 443 (473)
Q Consensus 377 P-~~~DQ~~nA~~v~~~l-----------G~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~ 443 (473)
= ...=....|+++.+.- .+-..+-. .+.+++.|.+++.+++.|+ ..++......+.+++.
T Consensus 286 Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ---~~~~~~~i~~~~~~ll~~~----~~~~~~~~~~~~~~~~ 357 (373)
T PF02684_consen 286 YKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQ---EDATPENIAAELLELLENP----EKRKKQKELFREIRQL 357 (373)
T ss_pred EcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHh
Confidence 3 2333444555554220 12222222 6789999999999999998 3444444444444433
No 95
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.21 E-value=0.013 Score=61.99 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=58.3
Q ss_pred CCcEEEeccc-Ch---HHhhcc-CC-cceeEe---ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEe
Q 047833 331 GQGLVVHKWA-PQ---VEILSH-RS-VSVFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVA 400 (473)
Q Consensus 331 ~~nv~~~~~v-p~---~~ll~~-~~-v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~ 400 (473)
.++|.+.++. +. ..++.+ ++ .++||. .=|+ .++.||+++|+|+|+.-.. ..+..++.- .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeC
Confidence 4678777764 32 233432 21 124664 3344 4899999999999986543 455556533 4587776
Q ss_pred cCCCCccCHHHHHHHHHHHH----cCChhhHHHHHHHHH
Q 047833 401 RGKSSEVLKKDIAAKIELVM----NETEKGIELRKNAYE 435 (473)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll----~~~~~~~~~~~~a~~ 435 (473)
. -+.++++++|.+++ +|++..+.+.+++++
T Consensus 693 p-----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 693 P-----YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5 46788999999876 566333445555443
No 96
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=0.00088 Score=63.54 Aligned_cols=354 Identities=15% Similarity=0.099 Sum_probs=179.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEEcCCcch--hhhhccCCCCCCceEEecCCC-CCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNK-YTITFVNTPLNL--RKLKSSVPQNSSINLLEIPFD-SIDHNLPPCTENT 80 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rG-h~Vt~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 80 (473)
|+||+++ +|++=.+.-+-.|.++|.+ .+ .+..++.+.... +.... .++...++.+ .+.+-+.
T Consensus 3 ~~Kv~~I-~GTRPE~iKmapli~~~~~-~~~~~~~vi~TGQH~d~em~~~------~le~~~i~~pdy~L~i~~------ 68 (383)
T COG0381 3 MLKVLTI-FGTRPEAIKMAPLVKALEK-DPDFELIVIHTGQHRDYEMLDQ------VLELFGIRKPDYDLNIMK------ 68 (383)
T ss_pred ceEEEEE-EecCHHHHHHhHHHHHHHh-CCCCceEEEEecccccHHHHHH------HHHHhCCCCCCcchhccc------
Confidence 4566655 4799999999999999999 76 565555555544 32222 1111222211 0000110
Q ss_pred CCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECC---CcchHHHHHHHhCCceEEEecchHHHHHHHhh
Q 047833 81 DSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDM---FFGWCKEIAQEYGIFHAIFIGGGGFGFACYYS 157 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~---~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 157 (473)
+. ..+......+...+.+++++. +||+|++-. -+++++++|.+.+||+.-+--+- .+
T Consensus 69 ---~~---~tl~~~t~~~i~~~~~vl~~~-------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl-------Rt 128 (383)
T COG0381 69 ---PG---QTLGEITGNIIEGLSKVLEEE-------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL-------RT 128 (383)
T ss_pred ---cC---CCHHHHHHHHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc-------cc
Confidence 00 122333445566778888988 999987753 23356789999999999863210 00
Q ss_pred hhccCCCCCCCCCcccCCCCCCCCcCCccccchhhhhcCCCChHHHHHHHHhccccCCcEEEEcCccccchhHHHHHHhh
Q 047833 158 LWVNLPHRNMDSDECVLPDFPEASTIHATQLADYLRVADGSDSFSAILQKVLPQWMNADGILVNTVEELDKIGLMYFKRK 237 (473)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (473)
.. .. +|. -..+.+.+.+ +...+.+|-..-+ ..+++.
T Consensus 129 ~~------------~~---~PE---E~NR~l~~~~----------------------S~~hfapte~ar~----nLl~EG 164 (383)
T COG0381 129 GD------------LY---FPE---EINRRLTSHL----------------------SDLHFAPTEIARK----NLLREG 164 (383)
T ss_pred CC------------CC---CcH---HHHHHHHHHh----------------------hhhhcCChHHHHH----HHHHcC
Confidence 00 00 111 0000011101 1111222210000 112223
Q ss_pred cCC-CeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHH----HHHhC-CCce
Q 047833 238 FGR-SVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAM----ALEAS-GKNF 311 (473)
Q Consensus 238 ~~~-~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~----al~~~-~~~~ 311 (473)
.++ ++..+|-...+.-.... .............+... .+..+++|+=.-.+.. +.+..+.. .++.. ++.+
T Consensus 165 ~~~~~IfvtGnt~iDal~~~~--~~~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~v 240 (383)
T COG0381 165 VPEKRIFVTGNTVIDALLNTR--DRVLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIV 240 (383)
T ss_pred CCccceEEeCChHHHHHHHHH--hhhccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceE
Confidence 333 46666644322200000 00000111111112222 3458888875555544 33444444 44444 4455
Q ss_pred EEEECCCC-CCCccccccccCCcEEEec---ccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHH
Q 047833 312 IWVVRPPI-GFDINSEIKCSGQGLVVHK---WAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSK 387 (473)
Q Consensus 312 i~~~~~~~-~~~~~~~~~~~~~nv~~~~---~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~ 387 (473)
|.-+.... -..+........+++...+ |.+...++.++. +++|-.|. -.-||-..|+|++++=..-++|+
T Consensus 241 iyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE--- 314 (383)
T COG0381 241 IYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGKPVLVLRDTTERPE--- 314 (383)
T ss_pred EEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---
Confidence 55543220 0000001111223566555 556788888876 47777653 45699999999999988888888
Q ss_pred HHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 388 LLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 388 ~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+++ . |.-+.+. .+.+.+.+++.++++++ ++.+|......-. .+|.+|.+-++.+.++..
T Consensus 315 ~v~-a-gt~~lvg------~~~~~i~~~~~~ll~~~----~~~~~m~~~~npY--------gdg~as~rIv~~l~~~~~ 373 (383)
T COG0381 315 GVE-A-GTNILVG------TDEENILDAATELLEDE----EFYERMSNAKNPY--------GDGNASERIVEILLNYFD 373 (383)
T ss_pred cee-c-CceEEeC------ccHHHHHHHHHHHhhCh----HHHHHHhcccCCC--------cCcchHHHHHHHHHHHhh
Confidence 444 5 5555543 46799999999999998 5655532222222 555566666666665443
No 97
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.17 E-value=3.1e-05 Score=74.71 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCeEEEEeeCCcccCC-H---HHHHHHHHHHHhC-CCceEEEECCCCCCCccc------cccccCCcEEEecccC---h
Q 047833 277 PYTSVLYVSFGSQNTIA-T---SQMMQLAMALEAS-GKNFIWVVRPPIGFDINS------EIKCSGQGLVVHKWAP---Q 342 (473)
Q Consensus 277 ~~~~~V~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~------~~~~~~~nv~~~~~vp---~ 342 (473)
.+++.++|++=...... + ..+..+++++.+. +.++||..... +.+ ..... +|+++.+.++ .
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~----p~~~~~i~~~l~~~-~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN----PRGSDIIIEKLKKY-DNVRLIEPLGYEEY 252 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-----HHHHHHHHHHHTT--TTEEEE----HHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC----chHHHHHHHHhccc-CCEEEECCCCHHHH
Confidence 45789999985555544 3 3455566666665 78899998522 211 11122 4898888776 5
Q ss_pred HHhhccCCcceeEeccCcchHH-HHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 343 VEILSHRSVSVFLSHCGWNSVL-EALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 343 ~~ll~~~~v~~~I~HGG~gt~~-eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
..++.+++ ++|+..| ++. ||.+.|+|+|.+ -|+-.+=.-+. . |-.+-+ ..+.+.|.++|.++++
T Consensus 253 l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r~-~-~~nvlv------~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 253 LSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGRE-R-GSNVLV------GTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHES--EEEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHHH-T-TSEEEE------TSSHHHHHHHHHHHHH
T ss_pred HHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHHh-h-cceEEe------CCCHHHHHHHHHHHHh
Confidence 66777877 5999999 666 999999999999 33333333333 4 555543 2688999999999998
Q ss_pred CC
Q 047833 422 ET 423 (473)
Q Consensus 422 ~~ 423 (473)
+.
T Consensus 318 ~~ 319 (346)
T PF02350_consen 318 DK 319 (346)
T ss_dssp -H
T ss_pred Ch
Confidence 74
No 98
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.17 E-value=0.0027 Score=62.28 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=89.8
Q ss_pred eEEEEeeCCcccC-CHHHHHHHHHHHHh--CCCceEEEECCCCCCCcc------c-c-ccccCCcEEEeccc--ChH---
Q 047833 280 SVLYVSFGSQNTI-ATSQMMQLAMALEA--SGKNFIWVVRPPIGFDIN------S-E-IKCSGQGLVVHKWA--PQV--- 343 (473)
Q Consensus 280 ~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~------~-~-~~~~~~nv~~~~~v--p~~--- 343 (473)
..+++..|.+... ..+.+...+..+.+ .+.+++++-+.. ..++. . . .....+++.+..+. ++.
T Consensus 190 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 268 (372)
T cd03792 190 RPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGA-TDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVN 268 (372)
T ss_pred CcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCC-CCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHH
Confidence 3566778887653 33444444444433 356666655432 11111 1 1 12234667777776 432
Q ss_pred HhhccCCcceeEecc---Cc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHH
Q 047833 344 EILSHRSVSVFLSHC---GW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELV 419 (473)
Q Consensus 344 ~ll~~~~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~l 419 (473)
.+++.+++ ||.-. |. .++.||+.+|+|+|+.... ..+..+... ..|...+ +.+.++.+|.++
T Consensus 269 ~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-------~~~~~a~~i~~l 334 (372)
T cd03792 269 ALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-------TVEEAAVRILYL 334 (372)
T ss_pred HHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-------CcHHHHHHHHHH
Confidence 45667664 66433 33 4899999999999987643 233445433 4565443 346788899999
Q ss_pred HcCChhhHHHHHHHHHHH-HHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 420 MNETEKGIELRKNAYEVR-EIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 420 l~~~~~~~~~~~~a~~l~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+++++..+.+.++|++.. +.+ +-...++++++.++
T Consensus 335 l~~~~~~~~~~~~a~~~~~~~~------------s~~~~~~~~~~~~~ 370 (372)
T cd03792 335 LRDPELRRKMGANAREHVRENF------------LITRHLKDYLYLIS 370 (372)
T ss_pred HcCHHHHHHHHHHHHHHHHHHc------------CHHHHHHHHHHHHH
Confidence 998844445555555543 222 24555566665544
No 99
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.16 E-value=0.00028 Score=69.96 Aligned_cols=140 Identities=23% Similarity=0.207 Sum_probs=82.5
Q ss_pred EEEEeeCCcccCC-HHHHHH----HHHHHHh--CCCceEEEECCCCCCCccccccccCCcEEEecccCh-HHhhccCCcc
Q 047833 281 VLYVSFGSQNTIA-TSQMMQ----LAMALEA--SGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQ-VEILSHRSVS 352 (473)
Q Consensus 281 ~V~vs~GS~~~~~-~~~~~~----~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~-~~ll~~~~v~ 352 (473)
.+++..|++.... .+.+.. ++..+.+ .+.+++++-... ...-.......+|.+.+++++ ..+++.+++
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~---~~~~~~l~~~~~V~~~G~v~~~~~~~~~adv- 300 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP---SPAVRALAALPGVTVTGSVADVRPYLAHAAV- 300 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC---hHHHHHhccCCCeEEeeecCCHHHHHHhCCE-
Confidence 3455668876533 333332 2222322 345655543221 110022223467999899984 566777776
Q ss_pred eeE--ec--cCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhH
Q 047833 353 VFL--SH--CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGI 427 (473)
Q Consensus 353 ~~I--~H--GG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 427 (473)
+| ++ .|.+ .+.||+.+|+|+|+.+...+.. .+.. |.|+.+. -+.++++++|.++++|++..+
T Consensus 301 -~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~------~~~~~la~ai~~ll~~~~~~~ 367 (397)
T TIGR03087 301 -AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA------ADPADFAAAILALLANPAERE 367 (397)
T ss_pred -EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC------CCHHHHHHHHHHHHcCHHHHH
Confidence 54 22 4553 6999999999999988643321 1223 5666553 368999999999999984445
Q ss_pred HHHHHHHHHH
Q 047833 428 ELRKNAYEVR 437 (473)
Q Consensus 428 ~~~~~a~~l~ 437 (473)
.+.+++++..
T Consensus 368 ~~~~~ar~~v 377 (397)
T TIGR03087 368 ELGQAARRRV 377 (397)
T ss_pred HHHHHHHHHH
Confidence 5666665543
No 100
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=0.00053 Score=64.85 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=120.3
Q ss_pred cchhHHHHHHhhcCCCeEEec-ccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHH
Q 047833 226 LDKIGLMYFKRKFGRSVWPIG-PVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMAL 304 (473)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 304 (473)
+|+++++. ++-..+||| |+....+ ....++...+-+....+++++.+--||-..--...+..+.++.
T Consensus 146 FE~~~y~k----~g~~~~yVGHpl~d~i~--------~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~ 213 (381)
T COG0763 146 FEPAFYDK----FGLPCTYVGHPLADEIP--------LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAA 213 (381)
T ss_pred CCHHHHHh----cCCCeEEeCChhhhhcc--------ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHH
Confidence 45564433 334488998 4433331 1234455556666556677999999997642222333333333
Q ss_pred Hh-----CCCceEEEECCCCCCC-ccc-ccccc-CCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEec
Q 047833 305 EA-----SGKNFIWVVRPPIGFD-INS-EIKCS-GQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGW 376 (473)
Q Consensus 305 ~~-----~~~~~i~~~~~~~~~~-~~~-~~~~~-~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 376 (473)
.. .+.+|++-+-+..... ... ..... ..++++.+.--. ..+..|++ ++++.| .-+.|+..+|+|||+.
T Consensus 214 ~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~aD~-al~aSG--T~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 214 QELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKR-KAFAAADA-ALAASG--TATLEAALAGTPMVVA 289 (381)
T ss_pred HHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHH-HHHHHhhH-HHHhcc--HHHHHHHHhCCCEEEE
Confidence 32 4578888875441000 000 00010 122333232222 34556665 455544 2478999999999985
Q ss_pred c-ccccchhhHHHHHHhhcce-----------EEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhc
Q 047833 377 P-LAAEQFYNSKLLEEEIGVC-----------VEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAF 444 (473)
Q Consensus 377 P-~~~DQ~~nA~~v~~~lG~g-----------~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~ 444 (473)
= ...=-+..|++..+-.=++ ..+-. ...+++.|.+++..++.|+...+.+++...++.+.+
T Consensus 290 Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq---~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l---- 362 (381)
T COG0763 290 YKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQ---EDCTPENLARALEELLLNGDRREALKEKFRELHQYL---- 362 (381)
T ss_pred EeccHHHHHHHHHhccCCcccchHHhcCCccchHHHh---hhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHH----
Confidence 2 1122233444444221111 11212 568899999999999999855567888888888888
Q ss_pred ccccccCCcHHHHHHHHHHHHH
Q 047833 445 KNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 445 ~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+.++++..+.+.+++.++
T Consensus 363 ----~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 363 ----REDPASEIAAQAVLELLL 380 (381)
T ss_pred ----cCCcHHHHHHHHHHHHhc
Confidence 455678888888877654
No 101
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.09 E-value=0.0027 Score=63.18 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=50.0
Q ss_pred EecccChHHhhccCCcceeEecc----CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHH
Q 047833 336 VHKWAPQVEILSHRSVSVFLSHC----GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKD 411 (473)
Q Consensus 336 ~~~~vp~~~ll~~~~v~~~I~HG----G~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~ 411 (473)
+.++.+..+++...++ ||.-+ =..++.||+++|+|+|+.-..+ + ..+.+. +-|... -+.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~-------~~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY-------DDGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec-------CCHHH
Confidence 5566677778888774 87664 3458899999999999986443 1 333322 333222 25779
Q ss_pred HHHHHHHHHcCC
Q 047833 412 IAAKIELVMNET 423 (473)
Q Consensus 412 l~~~i~~ll~~~ 423 (473)
+.++|.++|+++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999865
No 102
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.03 E-value=0.0012 Score=67.12 Aligned_cols=135 Identities=10% Similarity=-0.006 Sum_probs=75.1
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHhCCCceEEEECCCCCCCccc---cccccCCcEEEecccChH---HhhccCCc
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEASGKNFIWVVRPPIGFDINS---EIKCSGQGLVVHKWAPQV---EILSHRSV 351 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~---~~~~~~~nv~~~~~vp~~---~ll~~~~v 351 (473)
+..+++..|.+... ..+.+...+..+.+.+.++++.-... ...... .....+.++.+....++. .+++.+++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv 373 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-PEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADF 373 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCE
Confidence 33566677877653 34555555555555556666654322 000011 111225677654444433 35667665
Q ss_pred ceeEec---cCcc-hHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcC
Q 047833 352 SVFLSH---CGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNE 422 (473)
Q Consensus 352 ~~~I~H---GG~g-t~~eal~~GvP~l~~P~~~--DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~ 422 (473)
+|.- -|+| +.+||+++|+|+|+....+ |.-.......+. |-|..++. -+.+++.++|.++++.
T Consensus 374 --~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-----~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 374 --FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-----YNADALLAALRRALAL 442 (476)
T ss_pred --EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-----CCHHHHHHHHHHHHHH
Confidence 5532 2343 7789999999999876532 211111111123 57888765 4688999999999864
No 103
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.02 E-value=0.008 Score=59.97 Aligned_cols=81 Identities=17% Similarity=0.102 Sum_probs=53.6
Q ss_pred cCCcEEEecccChH---HhhccCCcceeEec---cCc-chHHHHHhhCCcEEeccccccchhhHHHHH---HhhcceEEE
Q 047833 330 SGQGLVVHKWAPQV---EILSHRSVSVFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLE---EEIGVCVEV 399 (473)
Q Consensus 330 ~~~nv~~~~~vp~~---~ll~~~~v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~---~~lG~g~~l 399 (473)
..++|.+.+++|+. .+|..+++ +|+- -|. -++.||+++|+|+|+.-..+.- ...++ .. ..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe
Confidence 35789999999865 45667664 5532 233 3889999999999986543211 11111 12 355442
Q ss_pred ecCCCCccCHHHHHHHHHHHHcCC
Q 047833 400 ARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 400 ~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
. +.++++++|.++++++
T Consensus 377 -----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred -----C--CHHHHHHHHHHHHhCC
Confidence 2 7899999999999976
No 104
>PLN02949 transferase, transferring glycosyl groups
Probab=98.01 E-value=0.023 Score=57.24 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=61.8
Q ss_pred cCCcEEEecccChHH---hhccCCcceeEe---ccCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecC
Q 047833 330 SGQGLVVHKWAPQVE---ILSHRSVSVFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARG 402 (473)
Q Consensus 330 ~~~nv~~~~~vp~~~---ll~~~~v~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~ 402 (473)
..++|.+..++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+--. ..+... ..|...-.
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~-~~g~tG~l- 405 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDE-DGQQTGFL- 405 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecC-CCCccccc-
Confidence 467899999998654 5666664 653 34455 7999999999999986533100 000100 00111111
Q ss_pred CCCccCHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHH
Q 047833 403 KSSEVLKKDIAAKIELVMNE-TEKGIELRKNAYEVREII 440 (473)
Q Consensus 403 ~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~a~~l~~~~ 440 (473)
. -+.++++++|.+++++ ++..+++.+++++..+++
T Consensus 406 --~-~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 406 --A-TTVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred --C-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 1 2789999999999985 334445777776654443
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.99 E-value=0.01 Score=60.07 Aligned_cols=134 Identities=10% Similarity=0.032 Sum_probs=73.7
Q ss_pred CeEEEEeeCCccc-CCHHHHHHHHHHHHhCCCceEEEECCCCCCCcc---ccccccCCcEEE-ecccCh--HHhhccCCc
Q 047833 279 TSVLYVSFGSQNT-IATSQMMQLAMALEASGKNFIWVVRPPIGFDIN---SEIKCSGQGLVV-HKWAPQ--VEILSHRSV 351 (473)
Q Consensus 279 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~---~~~~~~~~nv~~-~~~vp~--~~ll~~~~v 351 (473)
+..+++..|.+.. ...+.+...+.-+.+.+.+++++-... ....+ ......+.++.+ ..+-.. ..+++.+++
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~-~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv 359 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGD-PELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADM 359 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCc-HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCE
Confidence 3456667788765 334444444444444467777664221 00001 111223455543 455322 246777775
Q ss_pred ceeEe---ccCcc-hHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 352 SVFLS---HCGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 352 ~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~--DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
+|. +-|+| +.+||+++|+|.|+....+ |.-.....-.+. +-|..++. -+.++|.++|.++++
T Consensus 360 --~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~~~l~ 427 (466)
T PRK00654 360 --FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALRRALE 427 (466)
T ss_pred --EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHHHHHH
Confidence 553 34565 8889999999999875432 211111000223 56777754 577899999999886
No 106
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00026 Score=55.96 Aligned_cols=126 Identities=19% Similarity=0.184 Sum_probs=79.0
Q ss_pred EEEeeCCcccCCHHHHH--HHHHHHHhCCCceEEEECCCCCCCccccccccC-CcEEEe--cccC-hHHhhccCCcceeE
Q 047833 282 LYVSFGSQNTIATSQMM--QLAMALEASGKNFIWVVRPPIGFDINSEIKCSG-QGLVVH--KWAP-QVEILSHRSVSVFL 355 (473)
Q Consensus 282 V~vs~GS~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~-~nv~~~--~~vp-~~~ll~~~~v~~~I 355 (473)
+|||-||....=...+. ++..-.+.-..++|+..|... ..| .+..+. ++.+ -+.+...++ .+|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d---------~kpvagl~v~~F~~~~kiQsli~dar--IVI 70 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD---------IKPVAGLRVYGFDKEEKIQSLIHDAR--IVI 70 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC---------cccccccEEEeechHHHHHHHhhcce--EEE
Confidence 78999998431112211 133333445578999998541 112 223443 4445 345554555 699
Q ss_pred eccCcchHHHHHhhCCcEEeccccc--------cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 356 SHCGWNSVLEALSHGVPIIGWPLAA--------EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 356 ~HGG~gt~~eal~~GvP~l~~P~~~--------DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
+|+|.||+..++.-++|.+++|-.. .|-..|..+.+. +.=+...++ ...=.+.+...+..++.
T Consensus 71 SHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~spt--e~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 71 SHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSPT--ELVLQAGLQVSVADVLH 141 (161)
T ss_pred eccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcCC--chhhHHhHhhhhhhhcC
Confidence 9999999999999999999999743 688999999966 777766541 11123344444444444
No 107
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.91 E-value=0.028 Score=55.18 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=70.8
Q ss_pred EEEEeeCCccc-CCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHh---hccCCcceeE-
Q 047833 281 VLYVSFGSQNT-IATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEI---LSHRSVSVFL- 355 (473)
Q Consensus 281 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~l---l~~~~v~~~I- 355 (473)
.+++-.|++.. .+.+.+..++. ...+.+++++-... ...........+||.+.+++|+.++ +.++++ +++
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~--~~p~~~~vliG~~~--~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv-~l~P 280 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAK--ARPDWSFVLIGPVD--VSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDV-AILP 280 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHH--HCCCCEEEEECCCc--CccChhHhccCCCEEEeCCCCHHHHHHHHHhCCE-EecC
Confidence 34555688764 23333333222 12456666654321 1111111222479999999996654 667776 222
Q ss_pred ------eccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 356 ------SHCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 356 ------~HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+.++. +.+.|++++|+|+|..++ ...++ . +.|..+.. -+.+++.++|.+++.++
T Consensus 281 ~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~-~-~~~~~~~~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 281 FRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRR-Y-EDEVVLIA-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred CccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHh-h-cCcEEEeC-----CCHHHHHHHHHHHHhcC
Confidence 23343 458999999999998763 22233 3 32333333 27899999999987655
No 108
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.86 E-value=0.018 Score=58.54 Aligned_cols=133 Identities=10% Similarity=-0.031 Sum_probs=75.3
Q ss_pred eEEEEeeCCccc-CCHHHHHHHHHHHHhCCCceEEEECCCCCCCcc---ccccccCCcEEEecccChH---HhhccCCcc
Q 047833 280 SVLYVSFGSQNT-IATSQMMQLAMALEASGKNFIWVVRPPIGFDIN---SEIKCSGQGLVVHKWAPQV---EILSHRSVS 352 (473)
Q Consensus 280 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~---~~~~~~~~nv~~~~~vp~~---~ll~~~~v~ 352 (473)
..+++..|.+.. ...+.+.+.+..+.+.+.++++.-... ..... ......+.++.+....+.. .+++.+++
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv- 368 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD-PELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADF- 368 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC-HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCE-
Confidence 356666788765 334555555555544566766554321 00000 1112235667765555643 46777775
Q ss_pred eeEec---cCcc-hHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 353 VFLSH---CGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 353 ~~I~H---GG~g-t~~eal~~GvP~l~~P~~~--DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
+|.- -|+| +.+||+++|+|+|+....+ |.-.+...-... +-|..++. -+.+++.++|.+++.
T Consensus 369 -~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 369 -ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-----YDPGALLAALSRALR 436 (473)
T ss_pred -EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-----CCHHHHHHHHHHHHH
Confidence 5532 3554 7889999999999876532 211111000123 56777654 578899999999987
No 109
>PLN02316 synthase/transferase
Probab=97.82 E-value=0.016 Score=62.96 Aligned_cols=168 Identities=5% Similarity=-0.066 Sum_probs=88.7
Q ss_pred EEEEeeCCcccC-CHHHHHHHHHHHHhCCCceEEEECCCCCCCcc------cccc----ccCCcEEEecccChH---Hhh
Q 047833 281 VLYVSFGSQNTI-ATSQMMQLAMALEASGKNFIWVVRPPIGFDIN------SEIK----CSGQGLVVHKWAPQV---EIL 346 (473)
Q Consensus 281 ~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~------~~~~----~~~~nv~~~~~vp~~---~ll 346 (473)
.++...|.+... ..+.+...+..+.+.+.++|+ +|.+ .+.. .... ..++++.+....+.. .++
T Consensus 841 plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVI-vG~G--pd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iy 917 (1036)
T PLN02316 841 PLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVL-LGSA--PDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIY 917 (1036)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHhhcCcEEEE-EeCC--CCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHH
Confidence 455556776642 334444333333334677766 4432 1110 0111 224567665554543 467
Q ss_pred ccCCcceeEec---cCc-chHHHHHhhCCcEEeccccc--cchhhH----HHHHHh--hcceEEEecCCCCccCHHHHHH
Q 047833 347 SHRSVSVFLSH---CGW-NSVLEALSHGVPIIGWPLAA--EQFYNS----KLLEEE--IGVCVEVARGKSSEVLKKDIAA 414 (473)
Q Consensus 347 ~~~~v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~--DQ~~nA----~~v~~~--lG~g~~l~~~~~~~~~~~~l~~ 414 (473)
+.+++ ||.- =|+ .+.+||+++|+|.|+....+ |.-... .+.+.. -+-|..++. .+++.|..
T Consensus 918 aaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~-----~d~~aLa~ 990 (1036)
T PLN02316 918 AGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDG-----ADAAGVDY 990 (1036)
T ss_pred HhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCC-----CCHHHHHH
Confidence 77774 6642 344 48899999999999865432 211110 000101 035666653 57889999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhh
Q 047833 415 KIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMV 468 (473)
Q Consensus 415 ~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (473)
+|.+++... ......+++..++++ ...-|-.+.++..++..+..
T Consensus 991 AL~raL~~~------~~~~~~~~~~~r~~m----~~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 991 ALNRAISAW------YDGRDWFNSLCKRVM----EQDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred HHHHHHhhh------hhhHHHHHHHHHHHH----HhhCCHHHHHHHHHHHHHHH
Confidence 999999852 223333444444444 44455566666666655544
No 110
>PLN00142 sucrose synthase
Probab=97.82 E-value=0.028 Score=59.53 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=47.3
Q ss_pred eeEec---cCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHH----HcCCh
Q 047833 353 VFLSH---CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELV----MNETE 424 (473)
Q Consensus 353 ~~I~H---GG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~l----l~~~~ 424 (473)
+||.- -|+| ++.||+.+|+|+|+... ......++.- .-|..++. -+.++++++|.++ ++|++
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHH
Confidence 46643 5665 89999999999998654 3455555532 35777765 4667788887654 46774
Q ss_pred hhHHHHHHHHH
Q 047833 425 KGIELRKNAYE 435 (473)
Q Consensus 425 ~~~~~~~~a~~ 435 (473)
..+.+.+++++
T Consensus 739 lr~~mg~~Ar~ 749 (815)
T PLN00142 739 YWNKISDAGLQ 749 (815)
T ss_pred HHHHHHHHHHH
Confidence 44455555543
No 111
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.77 E-value=0.00022 Score=61.48 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=90.0
Q ss_pred CCeEEEEeeCCccc-CCHHHHHHHHHHHHh--CCCceEEEECCCCCCC-ccc--cccccCCcEEEecccC---hHHhhcc
Q 047833 278 YTSVLYVSFGSQNT-IATSQMMQLAMALEA--SGKNFIWVVRPPIGFD-INS--EIKCSGQGLVVHKWAP---QVEILSH 348 (473)
Q Consensus 278 ~~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~-~~~--~~~~~~~nv~~~~~vp---~~~ll~~ 348 (473)
+++.+++..|+... ...+.+..++.-+.. ...-.++.+|...... ... .......++.+..+++ -..++..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 92 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS 92 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccccc
Confidence 35567777888765 334444444444432 2333455554110000 001 1223457899989998 3556667
Q ss_pred CCcceeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCCh
Q 047833 349 RSVSVFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETE 424 (473)
Q Consensus 349 ~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~ 424 (473)
+++ +|+. |...++.||+.+|+|+|+. |...+...+... +.|..++. .+.+++.++|.+++++++
T Consensus 93 ~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-----~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 93 SDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-----NDIEELADAIEKLLNDPE 160 (172)
T ss_dssp TSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-----TSHHHHHHHHHHHHHHHH
T ss_pred cee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-----CCHHHHHHHHHHHHCCHH
Confidence 674 6665 5567999999999999975 455566666644 66888875 399999999999999985
Q ss_pred hhHHHHHHHHH
Q 047833 425 KGIELRKNAYE 435 (473)
Q Consensus 425 ~~~~~~~~a~~ 435 (473)
..+.+.+++++
T Consensus 161 ~~~~l~~~~~~ 171 (172)
T PF00534_consen 161 LRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 55556666654
No 112
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.75 E-value=0.0017 Score=63.68 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=89.5
Q ss_pred EEEEeeCCcccC-CHHHHHHHHHHHH-h-CCCceEEEECCCCCCCccc--cccccCCcEEEecccC-hHHhhccCCccee
Q 047833 281 VLYVSFGSQNTI-ATSQMMQLAMALE-A-SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAP-QVEILSHRSVSVF 354 (473)
Q Consensus 281 ~V~vs~GS~~~~-~~~~~~~~~~al~-~-~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp-~~~ll~~~~v~~~ 354 (473)
..++..|.+... ..+.+...+..+. + .+.++++............ .....+.++.+.++.+ -..++..+++-++
T Consensus 205 ~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ 284 (372)
T cd04949 205 HKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLL 284 (372)
T ss_pred CeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEe
Confidence 345666776542 2333333333332 2 3466665543221000001 1223456788877665 4566777776333
Q ss_pred Eec--cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHH
Q 047833 355 LSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKN 432 (473)
Q Consensus 355 I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 432 (473)
.++ |...++.||+++|+|+|+..... .....+... ..|..++. -+.++++++|.+++++++..+.+.++
T Consensus 285 ~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~~~~~ 355 (372)
T cd04949 285 TSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----GDIEALAEAIIELLNDPKLLQKFSEA 355 (372)
T ss_pred cccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----CcHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 343 33458999999999999975432 133444434 56766653 57899999999999998666677888
Q ss_pred HHHHHHHHH
Q 047833 433 AYEVREIIK 441 (473)
Q Consensus 433 a~~l~~~~~ 441 (473)
|++.++++.
T Consensus 356 a~~~~~~~s 364 (372)
T cd04949 356 AYENAERYS 364 (372)
T ss_pred HHHHHHHhh
Confidence 877766654
No 113
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.68 E-value=0.0083 Score=61.01 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=70.1
Q ss_pred CCcEEEecccChHHhhccCCcceeEe---ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCc
Q 047833 331 GQGLVVHKWAPQVEILSHRSVSVFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSE 406 (473)
Q Consensus 331 ~~nv~~~~~vp~~~ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~ 406 (473)
.++|...++.+...+++.+++ +|. .-|+ .++.||+++|+|+|+....+ .....++.- .-|..++.+. ..
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~-~~ 447 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDE-EE 447 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCc-cc
Confidence 567888899888899988885 654 3444 58999999999999976431 233344422 3466665310 01
Q ss_pred cC----HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 047833 407 VL----KKDIAAKIELVMNETEKGIELRKNAYEVREIIK 441 (473)
Q Consensus 407 ~~----~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~ 441 (473)
-+ .+.|+++|.++++++ ..+.+.++|.+.++.+.
T Consensus 448 ~d~~~~~~~la~~I~~ll~~~-~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFNSN-DIDAFHEYSYQIAEGFL 485 (500)
T ss_pred cchhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHhcC
Confidence 22 688999999999654 56678888887766653
No 114
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.67 E-value=0.0014 Score=65.22 Aligned_cols=148 Identities=15% Similarity=0.213 Sum_probs=88.2
Q ss_pred CeEEEEeeCCcccCC-HHHHHHHHHHHHhC--CCceEEE-ECCCCCCCccc-c----ccccCCcEEEecccChHH---hh
Q 047833 279 TSVLYVSFGSQNTIA-TSQMMQLAMALEAS--GKNFIWV-VRPPIGFDINS-E----IKCSGQGLVVHKWAPQVE---IL 346 (473)
Q Consensus 279 ~~~V~vs~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~-~~~~~~~~~~~-~----~~~~~~nv~~~~~vp~~~---ll 346 (473)
++..+++.|.+.... .+.+-..+..+... +.++.|+ .|.+ ..... . ......+|.+.+|+++.+ ++
T Consensus 229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g--~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~ 306 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG--PLEDTLKELAESKPENISVNFTGELSNSEVYKLY 306 (407)
T ss_pred CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc--hHHHHHHHHHHhcCCCceEEEecCCChHHHHHHH
Confidence 345666778876532 34333333333332 2455443 3322 11111 1 112245788999999764 44
Q ss_pred ccCCcceeEeccC----cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcC
Q 047833 347 SHRSVSVFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNE 422 (473)
Q Consensus 347 ~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~ 422 (473)
..+++++||...- -.+++||+++|+|+|+... ......+.+. +.|..+.. .-+.+++.++|.++++|
T Consensus 307 ~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~----~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 307 KENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK----DPTPNELVSSLSKFIDN 377 (407)
T ss_pred hhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC----CCCHHHHHHHHHHHHhC
Confidence 4444446765443 3589999999999998653 3355566533 47877754 45789999999999998
Q ss_pred ChhhHHHHHHHHHHH
Q 047833 423 TEKGIELRKNAYEVR 437 (473)
Q Consensus 423 ~~~~~~~~~~a~~l~ 437 (473)
++..+.++++|++.-
T Consensus 378 ~~~~~~m~~~ar~~~ 392 (407)
T cd04946 378 EEEYQTMREKAREKW 392 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 855555666655544
No 115
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.67 E-value=0.00099 Score=66.15 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=95.7
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHhC--CCceEEEECCCCCCCccc--cccccCCcEEEecccChHH---hhccCC
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEAS--GKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQVE---ILSHRS 350 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~~---ll~~~~ 350 (473)
++..+++.|..... ..+.+...+..+.+. +.+++++-.......... ......+++.+.+|+|+.+ ++..++
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aD 300 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDAD 300 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 34556677887642 334444444444433 344444432221000001 1223457899999999754 566777
Q ss_pred cceeEec---------cCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHH
Q 047833 351 VSVFLSH---------CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 351 v~~~I~H---------GG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll 420 (473)
+ ||.- -|. .++.||+.+|+|+|+.... .....++.. ..|..++. -+.++++++|.+++
T Consensus 301 v--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~~-----~d~~~la~ai~~l~ 368 (406)
T PRK15427 301 V--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVPE-----NDAQALAQRLAAFS 368 (406)
T ss_pred E--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeCC-----CCHHHHHHHHHHHH
Confidence 5 5542 344 5689999999999997543 334445433 46776654 47899999999999
Q ss_pred c-CChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 421 N-ETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 421 ~-~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
+ |+++.+++.+++++..+. .-+.....+++.+.++
T Consensus 369 ~~d~~~~~~~~~~ar~~v~~-----------~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 369 QLDTDELAPVVKRAREKVET-----------DFNQQVINRELASLLQ 404 (406)
T ss_pred hCCHHHHHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHh
Confidence 9 874444566665544322 2224566666666554
No 116
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.61 E-value=0.031 Score=57.67 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=52.1
Q ss_pred cEEEecccChH-HhhccCCcceeEe---ccC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCcc
Q 047833 333 GLVVHKWAPQV-EILSHRSVSVFLS---HCG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEV 407 (473)
Q Consensus 333 nv~~~~~vp~~-~ll~~~~v~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~ 407 (473)
++.+.++.++. ++++.+++ ||. +=| ..++.||+++|+|+|+....+... +. . |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEec------C
Confidence 46666777754 48888775 665 233 358899999999999987654321 22 2 3333332 3
Q ss_pred CHHHHHHHHHHHHcCC
Q 047833 408 LKKDIAAKIELVMNET 423 (473)
Q Consensus 408 ~~~~l~~~i~~ll~~~ 423 (473)
+.+++.++|.++|+++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 5789999999999988
No 117
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.59 E-value=0.022 Score=57.90 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=86.9
Q ss_pred CeEEEEeeCCcccC-CHHHHHHHHHHHHh--CCCceEEEECCCCCCCcc------c--cccccCCcEEEecccChHHhhc
Q 047833 279 TSVLYVSFGSQNTI-ATSQMMQLAMALEA--SGKNFIWVVRPPIGFDIN------S--EIKCSGQGLVVHKWAPQVEILS 347 (473)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~------~--~~~~~~~nv~~~~~vp~~~ll~ 347 (473)
++.+.+..|++... ..+.+-..+..+.+ .+.++++ .|... .++. . ......++|.+.+...-..+++
T Consensus 292 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~I-vG~g~-~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~ 369 (475)
T cd03813 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWV-IGPTD-EDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLP 369 (475)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEE-ECCCC-cChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHH
Confidence 34566677887653 33443333333433 2445444 44321 1111 0 1122457888888666778888
Q ss_pred cCCcceeEec----cCcchHHHHHhhCCcEEeccccccchhhHHHHHHh----hc-ceEEEecCCCCccCHHHHHHHHHH
Q 047833 348 HRSVSVFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE----IG-VCVEVARGKSSEVLKKDIAAKIEL 418 (473)
Q Consensus 348 ~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~----lG-~g~~l~~~~~~~~~~~~l~~~i~~ 418 (473)
.+++ +|.- |--.++.||+.+|+|+|+.. .......+.+. +| .|..++. .+.++++++|.+
T Consensus 370 ~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~-----~d~~~la~ai~~ 438 (475)
T cd03813 370 KLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP-----ADPEALARAILR 438 (475)
T ss_pred hCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC-----CCHHHHHHHHHH
Confidence 8775 4432 33468999999999999954 33444444431 12 6766654 578999999999
Q ss_pred HHcCChhhHHHHHHHHHHH
Q 047833 419 VMNETEKGIELRKNAYEVR 437 (473)
Q Consensus 419 ll~~~~~~~~~~~~a~~l~ 437 (473)
+++|++..+.+.+++++..
T Consensus 439 ll~~~~~~~~~~~~a~~~v 457 (475)
T cd03813 439 LLKDPELRRAMGEAGRKRV 457 (475)
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 9999855455555555433
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.53 E-value=0.0061 Score=59.98 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCcEEEecccChHH---hhccCCcceeEec----cCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecC
Q 047833 331 GQGLVVHKWAPQVE---ILSHRSVSVFLSH----CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARG 402 (473)
Q Consensus 331 ~~nv~~~~~vp~~~---ll~~~~v~~~I~H----GG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~ 402 (473)
..++.+.+++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+.... .+...+++. ..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC-
Confidence 46788889998654 4777775 5542 444 5778999999999997653 344445533 45764532
Q ss_pred CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhh
Q 047833 403 KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMV 468 (473)
Q Consensus 403 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (473)
..+.++++++|.++++|+ +..++.+++++.. .+.-+-....+.+++.++.+
T Consensus 328 ---~~d~~~la~~I~~ll~d~-~~~~~~~~ar~~~-----------~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 328 ---PMTSDSIISDINRTLADP-ELTQIAEQAKDFV-----------FSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred ---CCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHH-----------HHhCCHHHHHHHHHHHHHHh
Confidence 357899999999999998 2233444433322 12223456666666666543
No 119
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.44 E-value=0.002 Score=63.59 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=80.1
Q ss_pred CCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccc------cccccCCcEEEecccChHHhh---cc
Q 047833 278 YTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINS------EIKCSGQGLVVHKWAPQVEIL---SH 348 (473)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~------~~~~~~~nv~~~~~vp~~~ll---~~ 348 (473)
++.++|++|.+.....++.+..-.+.|++.+.-.+|...... ..... .....++.+.+.++.++.+.+ ..
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA-SGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST-THHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-HHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 456999999999999999999999999998877777765331 11010 111234668888888765444 33
Q ss_pred CCccee---EeccCcchHHHHHhhCCcEEeccccccc-hhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCCh
Q 047833 349 RSVSVF---LSHCGWNSVLEALSHGVPIIGWPLAAEQ-FYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETE 424 (473)
Q Consensus 349 ~~v~~~---I~HGG~gt~~eal~~GvP~l~~P~~~DQ-~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~ 424 (473)
+++ + ...+|..|++|||+.|||+|.+|-..=. ..-|..+. .+|+.-.+ .-+.++-.+.-.++-+|++
T Consensus 362 ~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~-~lGl~ElI------A~s~~eYv~~Av~La~D~~ 432 (468)
T PF13844_consen 362 ADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILR-ALGLPELI------ADSEEEYVEIAVRLATDPE 432 (468)
T ss_dssp -SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHH-HHT-GGGB-------SSHHHHHHHHHHHHH-HH
T ss_pred CCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHH-HcCCchhc------CCCHHHHHHHHHHHhCCHH
Confidence 443 4 4568999999999999999999953322 23333444 44776443 3456776666677777773
Q ss_pred hhHHHHHH
Q 047833 425 KGIELRKN 432 (473)
Q Consensus 425 ~~~~~~~~ 432 (473)
..+.+|++
T Consensus 433 ~l~~lR~~ 440 (468)
T PF13844_consen 433 RLRALRAK 440 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 120
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.19 E-value=0.053 Score=52.72 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=45.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhc
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~ 51 (473)
|.+++.|||++-....||+.-...+.++|++. .+.+|++++.+.+.+.++.
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 78888999999999999999999999999996 6999999998888776654
No 121
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.19 E-value=0.025 Score=50.48 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCcEEEecccCh----HHhhccCCcceeEeccC----cchHHHHHhhCCcEEecccccc
Q 047833 331 GQGLVVHKWAPQ----VEILSHRSVSVFLSHCG----WNSVLEALSHGVPIIGWPLAAE 381 (473)
Q Consensus 331 ~~nv~~~~~vp~----~~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~D 381 (473)
..|+.+.+++++ ..++..++ ++|+-.. .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 567888888632 22333366 4777665 6899999999999999887543
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.04 E-value=0.036 Score=53.05 Aligned_cols=134 Identities=10% Similarity=0.001 Sum_probs=75.4
Q ss_pred CCeEEEEeeCCc-c--cCCHHHHHHHHHHHHhCCCceEEEECCCCCCCc-cccccccCCcEEEecccC---hHHhhccCC
Q 047833 278 YTSVLYVSFGSQ-N--TIATSQMMQLAMALEASGKNFIWVVRPPIGFDI-NSEIKCSGQGLVVHKWAP---QVEILSHRS 350 (473)
Q Consensus 278 ~~~~V~vs~GS~-~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~-~~~~~~~~~nv~~~~~vp---~~~ll~~~~ 350 (473)
+++.|.+.-|+. . ..+.+.+.++++.+.+.++++++..|.+.+... .......+. ..+.+-.+ -.+++++++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPG-AVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCC-CeecCCCCHHHHHHHHHcCC
Confidence 345555555543 3 266788999999987777888776553311110 111111121 12223222 467787877
Q ss_pred cceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEe-cCCCCccCHHHHHHHHHHHH
Q 047833 351 VSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVA-RGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~-~~~~~~~~~~~l~~~i~~ll 420 (473)
+||+. -.|.++=|...|+|+|.+ + + +.+..+.. =+|-...+- ......++.+++.++|+++|
T Consensus 257 --l~I~~-DSgp~HlAaa~g~P~i~l-f-g--~t~p~~~~-P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 257 --AVVGV-DTGLTHLAAALDKPTVTL-Y-G--ATDPGRTG-GYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred --EEEeC-CChHHHHHHHcCCCEEEE-E-C--CCCHhhcc-cCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 47765 778999999999999875 1 1 11111111 001111111 11237899999999998875
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.91 E-value=0.005 Score=50.53 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=65.8
Q ss_pred EEEEeeCCccc-CCHHHHHH-HHHHHHhC--CCceEEEECCCCCCCccc-cccccCCcEEEecccC-hHHhhccCCccee
Q 047833 281 VLYVSFGSQNT-IATSQMMQ-LAMALEAS--GKNFIWVVRPPIGFDINS-EIKCSGQGLVVHKWAP-QVEILSHRSVSVF 354 (473)
Q Consensus 281 ~V~vs~GS~~~-~~~~~~~~-~~~al~~~--~~~~i~~~~~~~~~~~~~-~~~~~~~nv~~~~~vp-~~~ll~~~~v~~~ 354 (473)
+.++++|+... ...+.+-. +++.+.+. +.++++..... .. ... ..+|+.+.+|++ ..++++.+++...
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~-----~~l~~~-~~~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP-----DELKRL-RRPNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS------HHCCH-HHCTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH-----HHHHHh-cCCCEEEcCCHHHHHHHHHhCCEEEE
Confidence 34556666653 33444444 55555543 34544433211 11 111 246999999986 4566778887443
Q ss_pred Ee--ccC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcC
Q 047833 355 LS--HCG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNE 422 (473)
Q Consensus 355 I~--HGG-~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~ 422 (473)
.+ +.| .+++.|++.+|+|+|+.+.. ....++.. +.|..+ . -+.+++.++|.++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~-----~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-A-----NDPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----T-HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-C-----CCHHHHHHHHHHHhcC
Confidence 33 223 47999999999999998761 33334434 788776 3 3889999999999876
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.88 E-value=0.011 Score=57.07 Aligned_cols=111 Identities=14% Similarity=0.260 Sum_probs=79.0
Q ss_pred cCCcEEEecccChHHhhcc--CCcceeEeccC--------c------chHHHHHhhCCcEEeccccccchhhHHHHHHhh
Q 047833 330 SGQGLVVHKWAPQVEILSH--RSVSVFLSHCG--------W------NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEI 393 (473)
Q Consensus 330 ~~~nv~~~~~vp~~~ll~~--~~v~~~I~HGG--------~------gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~l 393 (473)
..+||.+.+|+|+.++..+ .+. ++|.-+- + +-+.+.+++|+|+|+. ++...+..+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~~~-gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSKGF-GLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhcCc-CeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 4578999999998776432 133 2232211 1 1267789999999985 567788899988
Q ss_pred cceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Q 047833 394 GVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLN 463 (473)
Q Consensus 394 G~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (473)
++|+.++ +.+++.+++.++.. + +.++|++|++++++.++ .|.-..+++++++.
T Consensus 279 ~~G~~v~-------~~~el~~~l~~~~~-~-~~~~m~~n~~~~~~~~~--------~g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD-------SLEELPEIIDNITE-E-EYQEMVENVKKISKLLR--------NGYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC-------CHHHHHHHHHhcCH-H-HHHHHHHHHHHHHHHHh--------cchhHHHHHHHHHh
Confidence 9999985 34689999988643 2 56679999999999995 45555666666654
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.82 E-value=0.61 Score=46.26 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCce-EEEECCCCCCCccccccccCCcEEEecccC-h---HHhhccCCcceeEec----cCcchHHHHH
Q 047833 297 MMQLAMALEASGKNF-IWVVRPPIGFDINSEIKCSGQGLVVHKWAP-Q---VEILSHRSVSVFLSH----CGWNSVLEAL 367 (473)
Q Consensus 297 ~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-~---~~ll~~~~v~~~I~H----GG~gt~~eal 367 (473)
...+++++...+.++ ++..|.. ....+.++....+.. + ..+++.+++ ||.- |--.++.||+
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g--------~~~~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp~vilEAm 327 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKF--------SPFTAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYPLILCEAL 327 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCC--------CcccccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCcCHHHHHH
Confidence 355777777754333 3444422 011134566556653 3 334555664 6543 3346899999
Q ss_pred hhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHH
Q 047833 368 SHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKI 416 (473)
Q Consensus 368 ~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i 416 (473)
++|+|+|.....+ ....+. . +-|..++. -+.+.|++++
T Consensus 328 A~G~PVVat~~gG----~~Eiv~-~-~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 328 SIGVPVIATHSDA----AREVLQ-K-SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred HcCCCEEEeCCCC----hHHhEe-C-CcEEEECC-----CCHHHHHhcc
Confidence 9999999997754 222333 5 56887765 3667787654
No 126
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.64 E-value=0.0035 Score=47.88 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=50.4
Q ss_pred hhhHhhhhcCCCCCeEEEEeeCCcccC---C--HHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEE
Q 047833 266 TELCKKWLDTKPYTSVLYVSFGSQNTI---A--TSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLV 335 (473)
Q Consensus 266 ~~~~~~~l~~~~~~~~V~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~ 335 (473)
+..+.+|+...++++.|+||+||.... . ...+..++++++..+..+|+.++... . ......|+||+
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~---~-~~lg~lP~nVR 97 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ---R-AELGELPDNVR 97 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC---C-GGCCS-TTTEE
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH---H-HhhCCCCCCCC
Confidence 456778999988999999999999763 2 25888999999999999999997431 1 12345677774
No 127
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.57 E-value=0.022 Score=47.00 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=66.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh-ccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK-SSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
||++++.....| ...+++.|.+ +||+|.+++.....+... . .++.+..++.+ . ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~-~g~~V~ii~~~~~~~~~~~~-----~~i~~~~~~~~-------~------k~~- 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKK-RGYDVHIITPRNDYEKYEII-----EGIKVIRLPSP-------R------KSP- 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHH-CCCEEEEEEcCCCchhhhHh-----CCeEEEEecCC-------C------Ccc-
Confidence 577777665555 5577999999 999999999866542222 2 66777766521 0 001
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch---HHHHHHHhC-CceEEEe
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW---CKEIAQEYG-IFHAIFI 145 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~---~~~~A~~~g-iP~v~~~ 145 (473)
..+. . . -.+..++++. +||+|.+...... +..++...+ +|++...
T Consensus 58 ---~~~~---~-~-~~l~k~ik~~-------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 58 ---LNYI---K-Y-FRLRKIIKKE-------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred ---HHHH---H-H-HHHHHHhccC-------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1111 1 1 2667888888 9999988865542 335667888 8988753
No 128
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.50 E-value=0.018 Score=57.50 Aligned_cols=140 Identities=16% Similarity=0.265 Sum_probs=89.2
Q ss_pred CCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCC--CCCccc---cccccCCcEEEecccChHH-----hh
Q 047833 277 PYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPI--GFDINS---EIKCSGQGLVVHKWAPQVE-----IL 346 (473)
Q Consensus 277 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~--~~~~~~---~~~~~~~nv~~~~~vp~~~-----ll 346 (473)
++.-+||++|--....+++.++.-.+.|+..+..++|....+. +..... ...-.|+.|.+.+-++..+ .|
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~L 835 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQL 835 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhh
Confidence 3466999999888889999999999999999999999997552 111111 1122355666655554322 22
Q ss_pred ccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 347 SHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 347 ~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+.-.++-+.|. |+.|.++.|+.|||||.+|...--...|.-.--.+|+|-.+.+ +.++-.+.--+|-.|.
T Consensus 836 aDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak------~~eEY~~iaV~Latd~ 905 (966)
T KOG4626|consen 836 ADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK------NREEYVQIAVRLATDK 905 (966)
T ss_pred hhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh------hHHHHHHHHHHhhcCH
Confidence 22223344554 7899999999999999999754433444333335588875543 4444444444455554
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.46 E-value=0.73 Score=42.64 Aligned_cols=104 Identities=19% Similarity=0.151 Sum_probs=71.6
Q ss_pred CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc--chhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHH
Q 047833 14 MAQGHIIPFLALALHLEKTNKYTITFVNTPL--NLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKL 91 (473)
Q Consensus 14 ~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 91 (473)
+..-|+.-+..|-++|.+ +||+|.+-+-+. ..+.+.. .|+.+..+... +... + -..+
T Consensus 8 ~n~~hvhfFk~lI~elek-kG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~----g~~t-------l----~~Kl 66 (346)
T COG1817 8 GNPPHVHFFKNLIWELEK-KGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKH----GGVT-------L----KEKL 66 (346)
T ss_pred CCcchhhHHHHHHHHHHh-CCeEEEEEEeecCcHHHHHHH-----hCCCeEeeccc----CCcc-------H----HHHH
Confidence 455788899999999999 999998876333 2344455 67777777732 1000 0 0122
Q ss_pred HHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecc
Q 047833 92 IEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
.... ...-.+.+++.+. +||+.+. -.++.+..+|.-+|+|.+.+.-.
T Consensus 67 ~~~~-eR~~~L~ki~~~~-------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 67 LESA-ERVYKLSKIIAEF-------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHH-HHHHHHHHHHhhc-------CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 2222 2233566778888 9999999 56778899999999999998543
No 130
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.37 E-value=1.4 Score=44.94 Aligned_cols=114 Identities=16% Similarity=0.024 Sum_probs=63.6
Q ss_pred EEEEeeCCccc-CC-HHHHHHHHHHHHh-CCCceEEEECCCCCCCccc--cccccCCcEEEecccC-hHHhhccCCccee
Q 047833 281 VLYVSFGSQNT-IA-TSQMMQLAMALEA-SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAP-QVEILSHRSVSVF 354 (473)
Q Consensus 281 ~V~vs~GS~~~-~~-~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp-~~~ll~~~~v~~~ 354 (473)
.+..+.|.+.. .. ...+..+...+.. .+.+++++-.......... ......++|.+.++.. -..+++.+++ |
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADV--f 476 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNV--F 476 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCE--E
Confidence 34455565543 22 3334444444443 3456555543221000001 1123357899888865 3456777775 7
Q ss_pred Ee---ccCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEec
Q 047833 355 LS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVAR 401 (473)
Q Consensus 355 I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~ 401 (473)
|. +-|+ +++.||+++|+|+|+... ..+...+.+- .-|..++.
T Consensus 477 VlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 477 ILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD 522 (578)
T ss_pred EEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC
Confidence 64 3454 589999999999998765 3455555544 56777765
No 131
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.20 E-value=0.64 Score=44.77 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=67.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhccCCCCCCce-EEecCCCCCCCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKSSVPQNSSIN-LLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
||+++-..+.||+.-...+.++|++. .+.+|++++.+.+.+.++.. ..++ +..++. .. ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~id~v~~~~~-------~~-----~~-- 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM----PEIRQAIDMPL-------GH-----GA-- 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC----chhceeeecCC-------cc-----cc--
Confidence 58999999999999999999999996 69999999988776666542 1111 111111 00 00
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEE
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAI 143 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~ 143 (473)
..+. ....+...++.. ++|++|.-........++...|+|.-.
T Consensus 63 ----~~~~-----~~~~~~~~lr~~-------~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 63 ----LELT-----ERRRLGRSLREE-------RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ----hhhh-----HHHHHHHHHhhc-------CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0000 011223445555 899999987666666777788887654
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.20 E-value=0.67 Score=44.83 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=68.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhccCCCCCCce-EEecCCCCCCCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKSSVPQNSSIN-LLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
||+++-..+.||+.-...+.++|++. .+.+|++++.+.+.+.++.. +.++ +..++.. .. ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~~------~~------~~~ 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLDRK------KA------KAG 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeChh------hh------cch
Confidence 58899999999999999999999996 69999999998887776652 1222 2222210 00 000
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEE
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAI 143 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~ 143 (473)
...+. ... .+...++.. ++|++|.-........++...|+|.-+
T Consensus 65 ---~~~~~----~~~-~l~~~lr~~-------~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 65 ---ERKLA----NQF-HLIKVLRAN-------RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HHHHH----HHH-HHHHHHHhC-------CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 00111 111 122334555 899999776555667888888999765
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=96.13 E-value=0.27 Score=47.05 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=61.5
Q ss_pred ccCCcEEEe---cccChH---HhhccCCcceeEec---cCc-chHHHHHhhCCcEEeccc------cccc------hhhH
Q 047833 329 CSGQGLVVH---KWAPQV---EILSHRSVSVFLSH---CGW-NSVLEALSHGVPIIGWPL------AAEQ------FYNS 386 (473)
Q Consensus 329 ~~~~nv~~~---~~vp~~---~ll~~~~v~~~I~H---GG~-gt~~eal~~GvP~l~~P~------~~DQ------~~nA 386 (473)
..++++.+. +++++. .+++.+++ ||.- =|+ .++.||+++|+|+|..-. .+|+ ..+.
T Consensus 198 ~l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v 275 (335)
T PHA01633 198 EVPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKV 275 (335)
T ss_pred CCCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCH
Confidence 346788877 455544 55667664 6653 344 478899999999998633 2332 2222
Q ss_pred HHHH--HhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 047833 387 KLLE--EEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREII 440 (473)
Q Consensus 387 ~~v~--~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~ 440 (473)
.... +. |.|..++ ..++++++++|.+++... ..+....++++.++++
T Consensus 276 ~~~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~-~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 276 EEYYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQ-DREERSMKLKELAKKY 324 (335)
T ss_pred HHhcCccc-Cceeeec-----CCCHHHHHHHHHHHHhcc-ChhhhhHHHHHHHHhc
Confidence 2222 24 5565553 579999999999995543 1112334445444444
No 134
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.76 E-value=0.74 Score=43.67 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=32.5
Q ss_pred ChHHhhccCCcceeEeccCcchHHHHHhhCCcEEeccccc
Q 047833 341 PQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAA 380 (473)
Q Consensus 341 p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~ 380 (473)
|+..+|..++. .|||---.+=+.||+..|+|+.++|...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 68889998886 5566666678899999999999999876
No 135
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.64 E-value=0.014 Score=48.97 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhhH
Q 047833 21 PFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKP 100 (473)
Q Consensus 21 p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (473)
-+..|+++|.+ +||+|+++++......-+. .. .++++..++.... .. .... .. ...
T Consensus 6 ~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~-~~--~~~~~~~~~~~~~----~~------~~~~---~~-------~~~ 61 (160)
T PF13579_consen 6 YVRELARALAA-RGHEVTVVTPQPDPEDDEE-EE--DGVRVHRLPLPRR----PW------PLRL---LR-------FLR 61 (160)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEE---GGG-SE-EE--TTEEEEEE--S-S----SS------GGGH---CC-------HHH
T ss_pred HHHHHHHHHHH-CCCEEEEEecCCCCccccc-cc--CCceEEeccCCcc----ch------hhhh---HH-------HHH
Confidence 46789999999 9999999997665443211 11 6777777774311 00 0000 00 112
Q ss_pred HHHHHH--HhHhhhcCCCCccEEEECCCcc-hHHHHHH-HhCCceEEEe
Q 047833 101 HFKKLV--NDLIDEQNGYKPLCIITDMFFG-WCKEIAQ-EYGIFHAIFI 145 (473)
Q Consensus 101 ~~~~~l--~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~-~~giP~v~~~ 145 (473)
.+..++ ++. +||+|.+..... ....+++ ..++|+|...
T Consensus 62 ~~~~~l~~~~~-------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 62 RLRRLLAARRE-------RPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHCHHCT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHHhhhcc-------CCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 233444 444 899999987432 2233444 7899999864
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.61 E-value=1.3 Score=42.84 Aligned_cols=104 Identities=12% Similarity=-0.029 Sum_probs=68.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
||+++-..+.||+.-...+.++|++. .+.+|++++.+.+.+.++.. +.++-. +.++ .. ...
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~v-i~~~-------~~----~~~-- 63 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEA-IPMP-------LG----HGA-- 63 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEE-Eecc-------cc----cch--
Confidence 79999999999999999999999996 69999999988877776653 222211 1111 00 000
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEE
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAI 143 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~ 143 (473)
..+. ....+...++.. ++|+||.-....-...++...|+|.-.
T Consensus 64 ---~~~~-----~~~~l~~~lr~~-------~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 ---LEIG-----ERRRLGHSLREK-------RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---hhhH-----HHHHHHHHHHhc-------CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0000 011223345555 899999876656566778888888665
No 137
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.39 E-value=2.3 Score=39.75 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=39.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~ 51 (473)
||+++-..+.||+.-+.++.++|++. .+-+|++++.+...+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 58899999999999999999999994 4589999999887776665
No 138
>PRK14098 glycogen synthase; Provisional
Probab=95.24 E-value=0.36 Score=49.15 Aligned_cols=165 Identities=9% Similarity=-0.028 Sum_probs=90.2
Q ss_pred EEEEeeCCcccC-CHHHHHHHHHHHHhCCCceEEEECCCCC--CCccccccccCCcEEEecccChH---HhhccCCccee
Q 047833 281 VLYVSFGSQNTI-ATSQMMQLAMALEASGKNFIWVVRPPIG--FDINSEIKCSGQGLVVHKWAPQV---EILSHRSVSVF 354 (473)
Q Consensus 281 ~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~--~~~~~~~~~~~~nv~~~~~vp~~---~ll~~~~v~~~ 354 (473)
.+++..|.+... ..+.+...+..+...+.++++.-..... ..........++++.+..+++.. .+++.+++ |
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi--~ 385 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDM--L 385 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCE--E
Confidence 456667777653 3455554444454456666655432100 00001112336788888888864 57777775 6
Q ss_pred Eecc---Ccc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc---CChhhH
Q 047833 355 LSHC---GWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN---ETEKGI 427 (473)
Q Consensus 355 I~HG---G~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~---~~~~~~ 427 (473)
|.-. |+| +.+||+++|+|.|+....+-........++. +-|...+. -+.++|.++|.++++ ++
T Consensus 386 l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~-----~d~~~la~ai~~~l~~~~~~---- 455 (489)
T PRK14098 386 LMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHD-----YTPEALVAKLGEALALYHDE---- 455 (489)
T ss_pred EeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCC-----CCHHHHHHHHHHHHHHHcCH----
Confidence 6432 333 6789999999988876533111110011113 56776654 578999999998763 43
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Q 047833 428 ELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASM 467 (473)
Q Consensus 428 ~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (473)
.. .++++ ++++ ...-|-.+.+++.++..++
T Consensus 456 ~~---~~~~~---~~~~----~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 456 ER---WEELV---LEAM----ERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred HH---HHHHH---HHHh----cCCCChHHHHHHHHHHHHH
Confidence 11 11122 2222 3455556666777766554
No 139
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.03 E-value=2.1 Score=41.21 Aligned_cols=106 Identities=15% Similarity=0.049 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSV 83 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (473)
|++|+++-....||+.=.+.+-..|++. .+.++++++++.+.+.++... .+ ..+... .. .... .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p----~I--~~vi~~------~~--~~~~-~ 65 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP----EI--DKVIII------DK--KKKG-L 65 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh----Hh--hhhccc------cc--cccc-c
Confidence 4689999999999999999999999995 569999999888777665521 11 111100 00 0000 0
Q ss_pred ChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEE
Q 047833 84 PYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAI 143 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~ 143 (473)
. ......+...+++. ++|+||.=.-..-...++...++|.-.
T Consensus 66 ~-----------~~~~~~l~~~lr~~-------~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 66 G-----------LKERLALLRTLRKE-------RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c-----------hHHHHHHHHHhhcc-------CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 11122334455555 799999887777667777788888776
No 140
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.71 E-value=1.9 Score=42.89 Aligned_cols=159 Identities=12% Similarity=0.140 Sum_probs=91.6
Q ss_pred hhhhcCCCCCeEEEEeeCCcccC------C----HHHHHHHHHHHHhCCCceEEEECCCC-----CCCcc---c-ccc-c
Q 047833 270 KKWLDTKPYTSVLYVSFGSQNTI------A----TSQMMQLAMALEASGKNFIWVVRPPI-----GFDIN---S-EIK-C 329 (473)
Q Consensus 270 ~~~l~~~~~~~~V~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~-----~~~~~---~-~~~-~ 329 (473)
..|+...+.++.|-|+....... . .+.+..+++.+...++++++...... ..|.. . ... .
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 44554433456788886644311 1 23344555656567888877654210 11111 0 011 1
Q ss_pred cCCcEEE-e-cccChH--HhhccCCcceeEeccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEE-EecCCC
Q 047833 330 SGQGLVV-H-KWAPQV--EILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVE-VARGKS 404 (473)
Q Consensus 330 ~~~nv~~-~-~~vp~~--~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~-l~~~~~ 404 (473)
.+.++++ . ++-+.+ .++.+++ ++|..==+ +..-|+..|||.+.++. | +.....+. .+|..-. .+.
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~d--l~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~~-~lg~~~~~~~~--- 374 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACE--LTVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIMQ-QLGLPEMAIDI--- 374 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCC--EEEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHHH-HcCCccEEech---
Confidence 2333332 2 233433 7787876 47753222 45668899999999987 3 44555555 4488755 566
Q ss_pred CccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 047833 405 SEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIK 441 (473)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~ 441 (473)
..++.++|.+.+.++++|.+ +++++.++--++++
T Consensus 375 ~~l~~~~Li~~v~~~~~~r~---~~~~~l~~~v~~~r 408 (426)
T PRK10017 375 RHLLDGSLQAMVADTLGQLP---ALNARLAEAVSRER 408 (426)
T ss_pred hhCCHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHH
Confidence 78899999999999999862 45555544444444
No 141
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.24 E-value=0.54 Score=40.21 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=60.1
Q ss_pred cCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhh--h---hccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 12 PFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRK--L---KSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 12 ~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~--v---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
..++.||..-+++|.+.+..+ ..++..+++..+.... + ++... ....+..+| .... ...
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--~~~~~~~~~---------r~r~----v~q 68 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--KRHKILEIP---------RARE----VGQ 68 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--ccceeeccc---------eEEE----ech
Confidence 346779999999999999332 5666666765554322 1 11111 111222222 1101 011
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHHh------CCceEEEec
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQEY------GIFHAIFIG 146 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~~------giP~v~~~~ 146 (473)
......+..+...... ..++.+. +||+||++.-.. ....+|..+ |.+.|.+-+
T Consensus 69 ~~~~~~~~~l~~~~~~-~~il~r~-------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 69 SYLTSIFTTLRAFLQS-LRILRRE-------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhHhhHHHHHHHHHHH-HHHHHHh-------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1112222222222222 3444555 899999996544 345788889 999999754
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.97 E-value=0.47 Score=35.78 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=43.1
Q ss_pred ccCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHH
Q 047833 357 HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAY 434 (473)
Q Consensus 357 HGG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~ 434 (473)
+|-..-+.|++.+|+|+|.-+. ......+ .-|..... -. +.+++.++|..+++|+++.++++++++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~----~~~~~~~~---~~-~~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF----EDGEHIIT---YN-DPEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc----CCCCeEEE---EC-CHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4555689999999999999865 3333322 22322222 23 889999999999999944444444443
No 143
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.4 Score=48.01 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=75.1
Q ss_pred CCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCcc----c---cccccCCcEEEecccChHHhhccC
Q 047833 277 PYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDIN----S---EIKCSGQGLVVHKWAPQVEILSHR 349 (473)
Q Consensus 277 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~----~---~~~~~~~nv~~~~~vp~~~ll~~~ 349 (473)
+++.+||+||+......++.+..-+..++..+-.++|..+.+-..... + .....++.+++.+-.|...-+++-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 357799999999999999999998999999888888888753111111 1 122335667777777754444322
Q ss_pred Cc-ceeE---eccCcchHHHHHhhCCcEEeccccccchh
Q 047833 350 SV-SVFL---SHCGWNSVLEALSHGVPIIGWPLAAEQFY 384 (473)
Q Consensus 350 ~v-~~~I---~HGG~gt~~eal~~GvP~l~~P~~~DQ~~ 384 (473)
.+ ++|. --||+.|..|+|..|||+|..+ ++|+.
T Consensus 507 ~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 507 GIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred chhheeeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 21 2343 4699999999999999999987 67663
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=93.20 E-value=3.9 Score=39.29 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=45.3
Q ss_pred cccChHH---hhccCCcceeEe---ccC-cchHHHHHhhCCcEEeccccc--cch---hhHHHHHH-----------hhc
Q 047833 338 KWAPQVE---ILSHRSVSVFLS---HCG-WNSVLEALSHGVPIIGWPLAA--EQF---YNSKLLEE-----------EIG 394 (473)
Q Consensus 338 ~~vp~~~---ll~~~~v~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~--DQ~---~nA~~v~~-----------~lG 394 (473)
.++|+.+ +++.+++ +|. ..| -.++.||+++|+|+|+.-..+ |.- .|.-.+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 3466544 4777775 542 333 358899999999999976532 211 11111110 1 2
Q ss_pred ceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 395 VCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 395 ~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+|..++ .+.+++.+++.+++.++
T Consensus 273 ~G~~v~------~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 273 VGYFLD------PDIEDAYQKLLEALANW 295 (331)
T ss_pred cccccC------CCHHHHHHHHHHHHhCC
Confidence 344332 36778888898999873
No 145
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.00 E-value=8.7 Score=36.70 Aligned_cols=46 Identities=7% Similarity=0.020 Sum_probs=40.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~ 51 (473)
+||+++-..+.||+.-...+.+.|++. .+.+|++++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 379999999999999999999999995 5999999998887665543
No 146
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.68 E-value=0.17 Score=44.28 Aligned_cols=42 Identities=17% Similarity=-0.049 Sum_probs=28.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
||||+.-=-+. +---+..|+++|++ .||+|+++.|...+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~-~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSA-LGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTT-TSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh-cCCeEEEEeCCCCCcCc
Confidence 35666654332 33346788999988 89999999988875543
No 147
>PLN02939 transferase, transferring glycosyl groups
Probab=92.21 E-value=3.5 Score=44.81 Aligned_cols=134 Identities=10% Similarity=0.090 Sum_probs=73.4
Q ss_pred EEEEeeCCcccC-CHHHHHHHHHHHHhCCCceEEEECCCCCC---Cccc--cccccCCcEEEecccChH---HhhccCCc
Q 047833 281 VLYVSFGSQNTI-ATSQMMQLAMALEASGKNFIWVVRPPIGF---DINS--EIKCSGQGLVVHKWAPQV---EILSHRSV 351 (473)
Q Consensus 281 ~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~---~~~~--~~~~~~~nv~~~~~vp~~---~ll~~~~v 351 (473)
.++...|.+... ..+.+...+..+...+.+++++-...... .... ......++|.+..+.+.. .+++.+++
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADI 859 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDM 859 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCE
Confidence 455666776642 33444433333333566665554321000 0001 111234678888888754 47877774
Q ss_pred ceeEec---cCc-chHHHHHhhCCcEEeccccc--cchhh--HHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 352 SVFLSH---CGW-NSVLEALSHGVPIIGWPLAA--EQFYN--SKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 352 ~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~--DQ~~n--A~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
||.- =|+ .+.+||+++|+|.|+....+ |.-.. ...+...-+-|...+. .+.+.|.++|.++++
T Consensus 860 --FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 860 --FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT-----PDEQGLNSALERAFN 930 (977)
T ss_pred --EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC-----CCHHHHHHHHHHHHH
Confidence 7642 333 48899999999999876543 21111 1111111145666643 478889999988875
No 148
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.09 E-value=2.4 Score=42.78 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=69.5
Q ss_pred EecccChHHh---hccCCcceeEe---ccCc-chHHHHHhhCCc----EEeccccccchhhHHHHHHhhcceEEEecCCC
Q 047833 336 VHKWAPQVEI---LSHRSVSVFLS---HCGW-NSVLEALSHGVP----IIGWPLAAEQFYNSKLLEEEIGVCVEVARGKS 404 (473)
Q Consensus 336 ~~~~vp~~~l---l~~~~v~~~I~---HGG~-gt~~eal~~GvP----~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~ 404 (473)
+...+++.++ +..+++ ||. +=|. .++.|++++|+| +|+.-+.+-. ..+ +-|+.+++
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l----~~gllVnP--- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL----NGALLVNP--- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh----CCcEEECC---
Confidence 3456666554 566665 553 3465 478899999999 6666544322 111 34666655
Q ss_pred CccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Q 047833 405 SEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAAS 466 (473)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (473)
.+.++++++|.++|+.+ .++-+++.+++.+.+. .-+...-++.+++.|.
T Consensus 407 --~d~~~lA~aI~~aL~~~--~~er~~r~~~~~~~v~---------~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 --YDIDGMADAIARALTMP--LEEREERHRAMMDKLR---------KNDVQRWREDFLSDLN 455 (456)
T ss_pred --CCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHh---------hCCHHHHHHHHHHHhh
Confidence 57899999999999976 2256666666777664 2346777888888775
No 149
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.35 E-value=1.1 Score=37.92 Aligned_cols=30 Identities=27% Similarity=0.218 Sum_probs=23.5
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 15 AQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
..|=-.-+..|+++|.+ +||+|+++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK-RGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHH-TT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHH-CCCEEEEEEcCCC
Confidence 55666778999999999 9999999976553
No 150
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.06 E-value=1.2 Score=37.16 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecC
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~ 65 (473)
|.+.++||++...|+-|-..-.+.|+..|++ .|+.|-=+-++.-.+.=.. .|++.+.+.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~ 59 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKR-----IGFKIVDLA 59 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeE-----eeeEEEEcc
Confidence 5566789999999999999999999999999 9999976655554433233 455666555
No 151
>PRK14099 glycogen synthase; Provisional
Probab=88.46 E-value=9.5 Score=38.87 Aligned_cols=145 Identities=11% Similarity=0.098 Sum_probs=70.9
Q ss_pred EEEEeeCCccc-CCHHHHHHHHHHHHhCCCceEEEECCCC--CCCccccccccCCcE-EEecccChHH-hh-ccCCccee
Q 047833 281 VLYVSFGSQNT-IATSQMMQLAMALEASGKNFIWVVRPPI--GFDINSEIKCSGQGL-VVHKWAPQVE-IL-SHRSVSVF 354 (473)
Q Consensus 281 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~--~~~~~~~~~~~~~nv-~~~~~vp~~~-ll-~~~~v~~~ 354 (473)
.++...|.... ...+.+...+..+.+.+.++++.-.... +..........+.++ .+.+|-.... ++ +.++ +|
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aD--if 373 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGAD--AL 373 (485)
T ss_pred cEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCC--EE
Confidence 34445677654 2334444444444444666655543210 000001111224455 4556633322 22 2345 46
Q ss_pred Ee---ccCcc-hHHHHHhhCCcEEeccccc--cchhhHHH---HHHhhcceEEEecCCCCccCHHHHHHHHHH---HHcC
Q 047833 355 LS---HCGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKL---LEEEIGVCVEVARGKSSEVLKKDIAAKIEL---VMNE 422 (473)
Q Consensus 355 I~---HGG~g-t~~eal~~GvP~l~~P~~~--DQ~~nA~~---v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~---ll~~ 422 (473)
|. +=|+| +.+||+++|+|.|+....+ |--..... .+.. +-|..++. -+.++|.++|.+ +++|
T Consensus 374 v~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-----~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 374 LVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-----VTADALAAALRKTAALFAD 447 (485)
T ss_pred EECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC-----CCHHHHHHHHHHHHHHhcC
Confidence 64 45555 6689999998777765422 21111100 0101 35777654 478999999997 6667
Q ss_pred ChhhHHHHHHH
Q 047833 423 TEKGIELRKNA 433 (473)
Q Consensus 423 ~~~~~~~~~~a 433 (473)
++..+.+.+++
T Consensus 448 ~~~~~~l~~~~ 458 (485)
T PRK14099 448 PVAWRRLQRNG 458 (485)
T ss_pred HHHHHHHHHHh
Confidence 62333344333
No 152
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=88.12 E-value=7.2 Score=33.28 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=22.6
Q ss_pred CccEEEECCCcchHHHHHHHh-CCceEEEe
Q 047833 117 KPLCIITDMFFGWCKEIAQEY-GIFHAIFI 145 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~~~A~~~-giP~v~~~ 145 (473)
.||+|++...--.++.+-+.+ ++|.+.+.
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 789999997644556677777 99999864
No 153
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.73 E-value=26 Score=33.36 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=48.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCC
Q 047833 3 QRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFD 67 (473)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 67 (473)
.++.|++++..|-.||--.+--=|..|++ .|.+|.+++........+-... +++++..++..
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~-~gf~VdliGy~~s~p~e~l~~h--prI~ih~m~~l 71 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAK-LGFQVDLIGYVESIPLEELLNH--PRIRIHGMPNL 71 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHH-cCCeEEEEEecCCCChHHHhcC--CceEEEeCCCC
Confidence 35678999999999999999999999999 9999999997665433322223 88999988844
No 154
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.39 E-value=3.2 Score=42.56 Aligned_cols=93 Identities=6% Similarity=0.103 Sum_probs=60.8
Q ss_pred CcEEEecccCh---HHhhccCCcceeEecc---CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCC
Q 047833 332 QGLVVHKWAPQ---VEILSHRSVSVFLSHC---GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSS 405 (473)
Q Consensus 332 ~nv~~~~~vp~---~~ll~~~~v~~~I~HG---G~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~ 405 (473)
..|.+.++... ...+..+. ++|.=+ |.++..||+.+|+|+| .......|+.. .=|.-+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li------ 472 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII------ 472 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe------
Confidence 56788787774 34454544 677665 6779999999999999 22222223311 222222
Q ss_pred ccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 047833 406 EVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIK 441 (473)
Q Consensus 406 ~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~ 441 (473)
-+.++|.++|..+|.++..-..+...|-+.+++..
T Consensus 473 -~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 473 -DDISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 25689999999999998544556666666666664
No 155
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.34 E-value=1.5 Score=35.95 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~ 65 (473)
+.+|++.+.++-+|-.-..-++..|++ +|++|++++.....+.+.+...+ .+.++..+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS 61 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFIDAAIE-TDADAILVS 61 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEc
Confidence 458999999999999999999999999 99999999976655444332111 444555555
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=87.32 E-value=19 Score=36.13 Aligned_cols=124 Identities=12% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCeEEEEeeCCcccCCHHHHHHHHHHHHh-CCCceEEEECCCCCCCccc-cccccCCcEEEec-ccC--hHHhhccCCcc
Q 047833 278 YTSVLYVSFGSQNTIATSQMMQLAMALEA-SGKNFIWVVRPPIGFDINS-EIKCSGQGLVVHK-WAP--QVEILSHRSVS 352 (473)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~-~~~~~~~nv~~~~-~vp--~~~ll~~~~v~ 352 (473)
+..++++| ..+.+..+.....+ ++..|=+..+.. ....- ..... +|++..+ +.+ -..++..|++-
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dly 351 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--MSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIY 351 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--ccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEE
Confidence 34467665 24555555555555 456665544322 11111 11222 5555444 455 47889999988
Q ss_pred eeEeccCc--chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 353 VFLSHCGW--NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 353 ~~I~HGG~--gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+-|+||.- .++.||+.+|+|++..=...... ..+. . |-..+ .-+.+++.++|.++|+++
T Consensus 352 Ldin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~---~-g~l~~-----~~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 352 LDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIA---S-ENIFE-----HNEVDQLISKLKDLLNDP 412 (438)
T ss_pred EEccccccHHHHHHHHHHcCCcEEEEecccCCc---cccc---C-Cceec-----CCCHHHHHHHHHHHhcCH
Confidence 88999774 69999999999999876432221 1111 1 33333 346799999999999998
No 157
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.83 E-value=3.4 Score=41.79 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=60.8
Q ss_pred EecccChHHh---hccCCcceeEe---ccCcc-hHHHHHhhCCc----EEeccccccchhhHHHHHHhhcceEEEecCCC
Q 047833 336 VHKWAPQVEI---LSHRSVSVFLS---HCGWN-SVLEALSHGVP----IIGWPLAAEQFYNSKLLEEEIGVCVEVARGKS 404 (473)
Q Consensus 336 ~~~~vp~~~l---l~~~~v~~~I~---HGG~g-t~~eal~~GvP----~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~ 404 (473)
+.+++++.++ ++.+++ ||. +-|.| ++.||+++|+| +|+.-..+ . +.. . .-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~---~~~---~-~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A---AEE---L-SGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-c---hhh---c-CCCEEECC---
Confidence 4467776554 666665 542 44654 77899999999 44432221 1 110 1 33556654
Q ss_pred CccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHH
Q 047833 405 SEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAA 465 (473)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (473)
.+.++++++|.++++++.+ +-+++.++..+.+. .-+...-++.+++.|
T Consensus 412 --~d~~~la~ai~~~l~~~~~--e~~~~~~~~~~~v~---------~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 --YDIDEVADAIHRALTMPLE--ERRERHRKLREYVR---------THDVQAWANSFLDDL 459 (460)
T ss_pred --CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH---------hCCHHHHHHHHHHhh
Confidence 5789999999999998721 23333333333333 233566677777654
No 158
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.22 E-value=8.1 Score=36.77 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=34.5
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 047833 5 KETIVLFPF-MAQGHIIPFLALALHLEKTNKYTITFVNTPLNL 46 (473)
Q Consensus 5 ~~~il~~~~-~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~ 46 (473)
++||+|+++ |+.|-..-..++|..|++ .|+.|.++++.+..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAh 42 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAH 42 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCC
Confidence 457887777 788999999999999999 99988888877743
No 159
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=86.15 E-value=3.7 Score=35.69 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=52.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcc-hhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLN-LRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
.++-+-..|.|-++-...|+++|++. .|+.|.+-++... .+.+.+... ..+....+|.|
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D----------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD----------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S-----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc-----------------
Confidence 44555556889999999999999993 3999988876444 333333211 23333334532
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHH--HHHHHhCCceEEEec
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCK--EIAQEYGIFHAIFIG 146 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~--~~A~~~giP~v~~~~ 146 (473)
.-..++.+++.+ +||++|.-..-.|.. ..|+..|||.+.++.
T Consensus 83 -------------~~~~~~rfl~~~-------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -------------FPWAVRRFLDHW-------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------------SHHHHHHHHHHH---------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------------CHHHHHHHHHHh-------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 122446778999 999877765555543 577888999999853
No 160
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=84.08 E-value=8.4 Score=35.39 Aligned_cols=90 Identities=13% Similarity=0.035 Sum_probs=54.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh-hhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLR-KLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
+|+++.. .|. -..|++.|.+ +||+|+..+...... .+...+ ..... .. .+
T Consensus 2 ~ILvlGG--T~e---gr~la~~L~~-~g~~v~~s~~t~~~~~~~~~~g----~~~v~-~g------~l------------ 52 (256)
T TIGR00715 2 TVLLMGG--TVD---SRAIAKGLIA-QGIEILVTVTTSEGKHLYPIHQ----ALTVH-TG------AL------------ 52 (256)
T ss_pred eEEEEec--hHH---HHHHHHHHHh-CCCeEEEEEccCCccccccccC----CceEE-EC------CC------------
Confidence 5666543 343 6789999999 999999887665432 222210 01111 00 00
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch------HHHHHHHhCCceEEE
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW------CKEIAQEYGIFHAIF 144 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~------~~~~A~~~giP~v~~ 144 (473)
-...+.+++++. ++|+||--..-++ +..+|+.+|||++.+
T Consensus 53 ------------~~~~l~~~l~~~-------~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ------------DPQELREFLKRH-------SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ------------CHHHHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 012356777777 8998776644332 347889999999997
No 161
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.07 E-value=7.2 Score=35.41 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=24.7
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 7 TIVLFPFMAQGHIIP-FLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 7 ~il~~~~~~~GH~~p-~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
|||+.- -.|=..| +.+|+++|+ .+++|+++.|...+.-+
T Consensus 2 rILlTN--DDGi~a~Gi~aL~~al~--~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 2 RILLTN--DDGIHAPGIRALARALR--EGADVTVVAPDREQSGA 41 (252)
T ss_pred eEEEec--CCccCCHHHHHHHHHHh--hCCCEEEEccCCCCccc
Confidence 454443 2344445 445666666 59999999988875444
No 162
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=83.93 E-value=14 Score=33.77 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCccCHHH-HHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 4 RKETIVLFPFMAQGHIIP-FLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p-~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
+++|||+.-= -|--.| +.+|+++|++ .| +|+++.|...+.-
T Consensus 4 ~~M~ILltND--DGi~a~Gi~aL~~~l~~-~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 4 KKPHILVCND--DGIEGEGIHVLAASMKK-IG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCEEEEECC--CCCCCHHHHHHHHHHHh-CC-CEEEEcCCCCCCC
Confidence 4568887653 343344 6688999999 88 7999988776443
No 163
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.77 E-value=7.3 Score=42.30 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=67.3
Q ss_pred ccCh---HHhhccCCcceeEe---ccCcc-hHHHHHhhCCc---EEeccccccchhhHHHHHHhhc-ceEEEecCCCCcc
Q 047833 339 WAPQ---VEILSHRSVSVFLS---HCGWN-SVLEALSHGVP---IIGWPLAAEQFYNSKLLEEEIG-VCVEVARGKSSEV 407 (473)
Q Consensus 339 ~vp~---~~ll~~~~v~~~I~---HGG~g-t~~eal~~GvP---~l~~P~~~DQ~~nA~~v~~~lG-~g~~l~~~~~~~~ 407 (473)
++|+ .+++..+++ ||. .-|.| +..|++.+|+| +++++-++ ..+.. +| -|+.+++ .
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allVnP-----~ 428 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLVNP-----W 428 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEECC-----C
Confidence 4554 355666675 543 34776 67799999999 55554322 11211 24 5777765 6
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhhh
Q 047833 408 LKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMVKE 470 (473)
Q Consensus 408 ~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (473)
+.++++++|.++|+.+.+ +-+++.+++.+.++ .-+...-.+.|++.+++..+
T Consensus 429 D~~~lA~AI~~aL~m~~~--er~~r~~~~~~~v~---------~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 429 NITEVSSAIKEALNMSDE--ERETRHRHNFQYVK---------THSAQKWADDFMSELNDIIV 480 (797)
T ss_pred CHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhh---------hCCHHHHHHHHHHHHHHHhh
Confidence 889999999999995411 34555555666654 22356778888887766543
No 164
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=83.70 E-value=36 Score=32.01 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=80.6
Q ss_pred EEEeeCCcccCCHHHHHHHHHHHHh---CCCceEEEECCCCCCCcc--------ccccccCCcEEE-ecccC---hHHhh
Q 047833 282 LYVSFGSQNTIATSQMMQLAMALEA---SGKNFIWVVRPPIGFDIN--------SEIKCSGQGLVV-HKWAP---QVEIL 346 (473)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~--------~~~~~~~~nv~~-~~~vp---~~~ll 346 (473)
+-|=+|-.+..+...+. +++++.+ .+.++++-.+-+.+ +.. +...-.++++.+ .+++| +..+|
T Consensus 147 ~tIlvGNSgd~SN~Hie-~L~~l~~~~~~~v~ii~PlsYp~g-n~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 147 MTILVGNSGDRSNRHIE-ALRALHQQFGDNVKIIVPMGYPAN-NQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred eEEEEeCCCCCcccHHH-HHHHHHHHhCCCeEEEEECCcCCC-CHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 44445665543433333 3333332 45677877765311 111 111122356653 44666 78899
Q ss_pred ccCCcceeEec--cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHH
Q 047833 347 SHRSVSVFLSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVM 420 (473)
Q Consensus 347 ~~~~v~~~I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll 420 (473)
+.|++.-|+|+ =|.||++-.+..|+|+++- .+-+.|....+ . |+-+-.+. ..++...+.++=+++.
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e-~-gv~Vlf~~---d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE-Q-GLPVLFTG---DDLDEDIVREAQRQLA 292 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh-C-CCeEEecC---CcccHHHHHHHHHHHH
Confidence 99999766665 4889999999999999986 45566666555 7 88776666 6788888877755544
No 165
>PRK12342 hypothetical protein; Provisional
Probab=83.70 E-value=8.4 Score=35.30 Aligned_cols=40 Identities=3% Similarity=-0.148 Sum_probs=30.3
Q ss_pred HHHHHHHHhHhhhcCCCCccEEEECCCcc------hHHHHHHHhCCceEEEec
Q 047833 100 PHFKKLVNDLIDEQNGYKPLCIITDMFFG------WCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~------~~~~~A~~~giP~v~~~~ 146 (473)
..+...++.. +||+|++..-+. -+..+|+.+|+|+++...
T Consensus 99 ~~La~~i~~~-------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 99 KALAAAIEKI-------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHHh-------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 3445567776 899999985544 267999999999999643
No 166
>PRK09620 hypothetical protein; Provisional
Probab=83.63 E-value=3.6 Score=37.13 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEcCC
Q 047833 6 ETIVLFPFMAQGHIIPF------------LALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~------------l~La~~L~~~rGh~Vt~~~~~ 43 (473)
.+|++.++|++=.+.|. ..||++|.+ +||+|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 47888888877666553 489999999 99999999744
No 167
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=83.16 E-value=2.1 Score=34.01 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
||++.+.++-.|.....-++..|++ .||+|++.......+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~~~~~~ 41 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGVDVPPEE 41 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCCCCCHHH
Confidence 5889999999999999999999999 9999999876554433
No 168
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=82.98 E-value=5 Score=35.48 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=32.5
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 5 KETIVLFPFM--AQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~~--~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|.+|+++++| +-|-..-.-.|+.+|+. +|+.|.++-..-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~Di 41 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDI 41 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecCc
Confidence 4577777764 78999999999999999 999999986444
No 169
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=82.72 E-value=5.5 Score=30.52 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=51.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
||||++..|++-| +||+.|.++ +..+|.++-...-...+.+ ...+.
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G~~~~~~---------~~~~~------------------- 47 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPGTAELGK---------NVPID------------------- 47 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TTGGGTSE---------EE-S--------------------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHHHHhhce---------ecCCC-------------------
Confidence 5899999999999 689999985 4455555432221111111 11110
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc---hHHHHHHHhCCceEE
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG---WCKEIAQEYGIFHAI 143 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~---~~~~~A~~~giP~v~ 143 (473)
..-.+.+.++.++. +.|+||..+=.+ ......+..|||++-
T Consensus 48 -----------~~d~~~l~~~a~~~-------~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 48 -----------ITDPEELADFAKEN-------KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp -----------TT-HHHHHHHHHHT-------TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred -----------CCCHHHHHHHHHHc-------CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 01133455666777 899999996333 345677788998764
No 170
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=82.52 E-value=5.4 Score=40.94 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=48.9
Q ss_pred ChHHhhccCCcceeEe---ccCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhc--ceEEEecC--CCCccCHHHH
Q 047833 341 PQVEILSHRSVSVFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIG--VCVEVARG--KSSEVLKKDI 412 (473)
Q Consensus 341 p~~~ll~~~~v~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG--~g~~l~~~--~~~~~~~~~l 412 (473)
+..+++..|++ +|. +=|+| ++.||+.+|+|+|.....+=- .++..+... | .|+.+..- +.-.-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~-~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIED-PESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhcc-CCCceEEEecCCccchHHHHHHH
Confidence 35777777775 555 45654 899999999999998763210 112222212 2 46666531 1123356889
Q ss_pred HHHHHHHHcCC
Q 047833 413 AAKIELVMNET 423 (473)
Q Consensus 413 ~~~i~~ll~~~ 423 (473)
++++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 99999998655
No 171
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=81.19 E-value=11 Score=34.66 Aligned_cols=40 Identities=5% Similarity=-0.224 Sum_probs=30.1
Q ss_pred HHHHHHHHhHhhhcCCCCccEEEECCCcc------hHHHHHHHhCCceEEEec
Q 047833 100 PHFKKLVNDLIDEQNGYKPLCIITDMFFG------WCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~------~~~~~A~~~giP~v~~~~ 146 (473)
..+.+.+++. .||+|++..-+. -+..+|+.+|+|+++...
T Consensus 102 ~~La~ai~~~-------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 102 SALAAAAQKA-------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHHh-------CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 3445667777 899999975443 356899999999999754
No 172
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=80.58 E-value=10 Score=35.64 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhh----C
Q 047833 295 SQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSH----G 370 (473)
Q Consensus 295 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~----G 370 (473)
+.+..+.+.++..++.+++..... ... ...+. ...+..++-..++ ++|+-||-||++++++. +
T Consensus 21 e~~~~i~~~L~~~g~~v~v~~~~~-------~~~-~~~~~---~~~~~~~~~~~~d--~vi~~GGDGt~l~~~~~~~~~~ 87 (291)
T PRK02155 21 EPLESLAAFLAKRGFEVVFEADTA-------RNI-GLTGY---PALTPEEIGARAD--LAVVLGGDGTMLGIGRQLAPYG 87 (291)
T ss_pred HHHHHHHHHHHHCCCEEEEecchh-------hhc-Ccccc---cccChhHhccCCC--EEEEECCcHHHHHHHHHhcCCC
Confidence 445667777777777766643211 000 00000 0012223222344 69999999999999874 6
Q ss_pred CcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 371 VPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 371 vP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+|++.+- .|-.--. ...+.+++.++++++++++
T Consensus 88 ~pilGIn-----------------~G~lGFL---~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 88 VPLIGIN-----------------HGRLGFI---TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEc-----------------CCCcccc---ccCCHHHHHHHHHHHHcCC
Confidence 7877763 2211111 3567788999999998876
No 173
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=79.82 E-value=3.2 Score=36.27 Aligned_cols=48 Identities=8% Similarity=-0.134 Sum_probs=36.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
|+-+..||++.-.|+.|=+.-...+++.|++ +||+|.++.++...+.+
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k-~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVD-EGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHh-CcCEEEEEECHhHHHHh
Confidence 4444568887777765555447999999999 99999999988765544
No 174
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=78.37 E-value=10 Score=32.71 Aligned_cols=106 Identities=17% Similarity=0.067 Sum_probs=56.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcE--EE-EEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYT--IT-FVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDS 82 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~--Vt-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (473)
+||+|+.+++. ..+..+..+|.+ ++|+ +. +++.++.......... ..+........ .+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~-~~~~~~iv~Vit~~~~~~~~~~~~~--~~~~~~~~~~~----~~--------- 61 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKA-RGHNVEIVLVITNPDKPRGRSRAIK--NGIPAQVADEK----NF--------- 61 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHT-TSSEEEEEEEEESSTTTHHHHHHHH--TTHHEEEHHGG----GS---------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHh-CCCCceEEEEecccccccccccccc--CCCCEEecccc----CC---------
Confidence 47888866544 556677889999 9997 44 4443333221111111 22333322211 00
Q ss_pred CChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEecc
Q 047833 83 VPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~~ 147 (473)
.+ .....+.+.+.+++. +||++|+-.+.. ....+-+.....++.++++
T Consensus 62 ~~----------~~~~~~~~~~~l~~~-------~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 62 QP----------RSENDEELLELLESL-------NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp SS----------HHHHHHHHHHHHHHT-------T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred Cc----------hHhhhhHHHHHHHhh-------ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 00 012345567788888 999998886543 2334556667777887664
No 175
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=77.61 E-value=3.2 Score=33.65 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=35.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+||++...|+.+=+. ...+.+.|++ +||+|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR-AGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT-TTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh-CCCEEEEEECCcHHHHhhh
Confidence 378877777766666 9999999999 9999999998888777766
No 176
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=77.48 E-value=87 Score=31.88 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=75.5
Q ss_pred cEEEecccChHH---hhccCCcceeEe--ccCcchHH-HHHhhCC----cEEeccccccchhhHHHHHHhhcceEEEecC
Q 047833 333 GLVVHKWAPQVE---ILSHRSVSVFLS--HCGWNSVL-EALSHGV----PIIGWPLAAEQFYNSKLLEEEIGVCVEVARG 402 (473)
Q Consensus 333 nv~~~~~vp~~~---ll~~~~v~~~I~--HGG~gt~~-eal~~Gv----P~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~ 402 (473)
-+.+.+.+|+.+ ++..++| ++|| .-|.|-+. |.+.++. |+|+--+.+ | .+ .|.-|+.+++
T Consensus 363 v~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~-~l~~AllVNP- 432 (487)
T TIGR02398 363 LQFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AV-ELKGALLTNP- 432 (487)
T ss_pred EEEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hh-hcCCCEEECC-
Confidence 356668888765 4556676 5555 46888554 9999987 554443321 1 13 3355788876
Q ss_pred CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhhh
Q 047833 403 KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMVKE 470 (473)
Q Consensus 403 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (473)
.+.++++++|.+.|+.+ . ++=++|.+++.+.++ .-....=.+.|++.|+..++
T Consensus 433 ----~d~~~~A~ai~~AL~m~-~-~Er~~R~~~l~~~v~---------~~d~~~W~~~fl~~l~~~~~ 485 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMP-K-AEQQARMREMFDAVN---------YYDVQRWADEFLAAVSPQAQ 485 (487)
T ss_pred ----CCHHHHHHHHHHHHcCC-H-HHHHHHHHHHHHHHh---------hCCHHHHHHHHHHHhhhccc
Confidence 68899999999999998 2 244566666666665 22367778888888876654
No 177
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=76.85 E-value=69 Score=30.70 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=84.3
Q ss_pred EEEEeeCCcccCCHHHHHHHHHHHHh---CCCceEEEECCCCCCCcc------c--cccccCCcEEE-ecccC---hHHh
Q 047833 281 VLYVSFGSQNTIATSQMMQLAMALEA---SGKNFIWVVRPPIGFDIN------S--EIKCSGQGLVV-HKWAP---QVEI 345 (473)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~------~--~~~~~~~nv~~-~~~vp---~~~l 345 (473)
.+.|=.|-.+..+...+.. ++++.+ .+.++++=.+.+. .... . ...-..+++.+ .+++| +..+
T Consensus 185 ~ltILvGNSgd~sNnHiea-L~~L~~~~~~~~kIivPLsYg~-~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~l 262 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEA-LEALKQQFGDDVKIIVPLSYGA-NNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLAL 262 (360)
T ss_pred ceEEEEcCCCCCCccHHHH-HHHHHHhcCCCeEEEEECCCCC-chHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHH
Confidence 4555556665433333322 223322 4577777776541 1100 1 11123356754 56887 7788
Q ss_pred hccCCcceeEec--cCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHc
Q 047833 346 LSHRSVSVFLSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMN 421 (473)
Q Consensus 346 l~~~~v~~~I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~ 421 (473)
|..|++.-|.|. =|.|++.-.+..|+|+++- .+-+.|-...+ . |+-+-... ..++.+.|+++=+++.+
T Consensus 263 L~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~-~-~ipVlf~~---d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 263 LSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKE-Q-GIPVLFYG---DELDEALVREAQRQLAN 332 (360)
T ss_pred HHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHh-C-CCeEEecc---ccCCHHHHHHHHHHHhh
Confidence 999998655554 5899999999999999986 45555555555 7 88777665 78999999999888876
No 178
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=76.84 E-value=11 Score=40.73 Aligned_cols=111 Identities=17% Similarity=0.084 Sum_probs=66.2
Q ss_pred EEEecccChHH---hhccCCcceeEec---cCc-chHHHHHhhCCc---EEeccccccchhhHHHHHHhhcceEEEecCC
Q 047833 334 LVVHKWAPQVE---ILSHRSVSVFLSH---CGW-NSVLEALSHGVP---IIGWPLAAEQFYNSKLLEEEIGVCVEVARGK 403 (473)
Q Consensus 334 v~~~~~vp~~~---ll~~~~v~~~I~H---GG~-gt~~eal~~GvP---~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~ 403 (473)
+.+.+++++.+ +++.+++ ||.- -|. .++.|++.+|+| .+++.... .-+.. . .-|+.+++
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~---G~~~~---l-~~~llv~P-- 412 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA---GAAAE---L-AEALLVNP-- 412 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEeccc---chhHH---h-CcCeEECC--
Confidence 34556788664 4556665 4432 354 477899999775 23332211 11111 2 23677765
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhh
Q 047833 404 SSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMVK 469 (473)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (473)
.+.++++++|.++|+.+.. +.+++.+++.+.++ .-+...-++.+++.+++..
T Consensus 413 ---~d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~---------~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 413 ---NDIEGIAAAIKRALEMPEE--EQRERMQAMQERLR---------RYDVHKWASDFLDELREAA 464 (726)
T ss_pred ---CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHH
Confidence 5789999999999997611 34444445555543 2346777888888777664
No 179
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=76.75 E-value=12 Score=31.58 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=57.5
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhCCCcEEEEEcCCc---chhh----hhccCCCCCCceEEecCCCCCCCCCCCC
Q 047833 8 IVLFPFMAQGHIIP----FLALALHLEKTNKYTITFVNTPL---NLRK----LKSSVPQNSSINLLEIPFDSIDHNLPPC 76 (473)
Q Consensus 8 il~~~~~~~GH~~p----~l~La~~L~~~rGh~Vt~~~~~~---~~~~----v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (473)
|+++.-...|.++| .+..|++|.+..|.+|+.++..+ ..+. +...|. . +...+..+ .+..
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~--d--~v~~~~~~----~~~~- 72 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGA--D--KVYHIDDP----ALAE- 72 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTE--S--EEEEEE-G----GGTT-
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCC--c--EEEEecCc----cccc-
Confidence 44444434666666 67889999974577877766442 2222 222222 1 23333311 1100
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc---hHHHHHHHhCCceEEE
Q 047833 77 TENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG---WCKEIAQEYGIFHAIF 144 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~---~~~~~A~~~giP~v~~ 144 (473)
. ..+.....+.+++++. +||+|+...... .+..+|.++|.|++.=
T Consensus 73 ------~----------~~~~~a~~l~~~~~~~-------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 73 ------Y----------DPEAYADALAELIKEE-------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp ------C-----------HHHHHHHHHHHHHHH-------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred ------c----------CHHHHHHHHHHHHHhc-------CCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 0 0123445567777887 899999986555 3458999999999984
No 180
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=76.01 E-value=34 Score=31.34 Aligned_cols=37 Identities=22% Similarity=0.081 Sum_probs=23.9
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHhCCCcEEEEEcCCcchh
Q 047833 7 TIVLFPFMAQGHIIP-FLALALHLEKTNKYTITFVNTPLNLR 47 (473)
Q Consensus 7 ~il~~~~~~~GH~~p-~l~La~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
|||+.-= -|--.| +.+|+++|++ +|+|+++.|...+.
T Consensus 2 ~ILvtND--DGi~apGl~aL~~~l~~--~~~V~VvAP~~~~S 39 (253)
T PRK13933 2 NILLTND--DGINAEGINTLAELLSK--YHEVIIVAPENQRS 39 (253)
T ss_pred eEEEEcC--CCCCChhHHHHHHHHHh--CCcEEEEccCCCCc
Confidence 5555432 233333 6678888866 57999998887654
No 181
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=75.96 E-value=14 Score=33.64 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=26.4
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 7 TIVLFPFMAQGHIIP-FLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 7 ~il~~~~~~~GH~~p-~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
|||+.- --|-..| +.+|+++|++ .| +|+++.|...+.-.
T Consensus 2 ~ILltN--DDGi~a~Gi~aL~~~l~~-~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 2 KILLTN--DDGIHSPGIRALYQALKE-LG-EVTVVAPARQRSGT 41 (244)
T ss_pred eEEEEC--CCCCCCHhHHHHHHHHHh-CC-CEEEEeCCCCcccc
Confidence 455443 2343344 6688999999 98 89999888865443
No 182
>PRK05973 replicative DNA helicase; Provisional
Probab=75.79 E-value=14 Score=33.49 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
=+++..-|+.|-..-.+.++....+ +|+.|.|++.+...+.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~i~ 108 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQDVR 108 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHH
Confidence 3567777899999999999999999 999999999887655443
No 183
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.32 E-value=6.3 Score=36.40 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=38.6
Q ss_pred ceeEeccCcchHHHHHh------hCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 352 SVFLSHCGWNSVLEALS------HGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~------~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+++|+-||-||++.+++ .++|++.+- .|-..-. .+.+.+++.+.++++++++
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN-----------------~G~lGFL---~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVH-----------------TGHLGFY---TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEe-----------------CCCceec---ccCCHHHHHHHHHHHHcCC
Confidence 46999999999999986 488988873 2211111 3566788889999998876
No 184
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=75.25 E-value=1.5 Score=38.10 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEcCCc
Q 047833 6 ETIVLFPFMAQGHIIPF------------LALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~------------l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.||++.++|++=++.|. ..||+++.. +||+|+++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCc
Confidence 48888888888887773 589999999 999999999774
No 185
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.20 E-value=19 Score=33.64 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=67.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYH 86 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 86 (473)
.|-+...|+-|-=.-.=.|...|++ +||.|-++...+.....-.+..- ..++...+..+ +.-+- ...+.
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLG-DRiRM~~~~~~------~~vFi--Rs~~s- 121 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILG-DRIRMQRLAVD------PGVFI--RSSPS- 121 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCCCCCCccccc-cHhhHHhhccC------CCeEE--eecCC-
Confidence 4558888999999999999999999 99999999877753322111000 22232222211 00000 00010
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHHhCCceEEEe
Q 047833 87 LVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~ 145 (473)
+.....+.........+++-. ++|+||.+..-. .=..+++...+-.++..
T Consensus 122 --rG~lGGlS~at~~~i~~ldAa-------G~DvIIVETVGvGQsev~I~~~aDt~~~v~~ 173 (323)
T COG1703 122 --RGTLGGLSRATREAIKLLDAA-------GYDVIIVETVGVGQSEVDIANMADTFLVVMI 173 (323)
T ss_pred --CccchhhhHHHHHHHHHHHhc-------CCCEEEEEecCCCcchhHHhhhcceEEEEec
Confidence 111112222233344555555 899999997644 22367777777666653
No 186
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=75.09 E-value=21 Score=31.42 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCc-c---hhhhhccCCCCCCceEEecCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPL-N---LRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTEN 79 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~-~---~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (473)
|+||+++.+|..+=+. ++.+++.+. .+++|.++.+.. . .+...+ .++.+..++.. .+..
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~~----~~~~---- 64 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDHK----DFPS---- 64 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECcc----ccCc----
Confidence 4689988886644333 555667761 247888754332 2 122233 56666554421 0100
Q ss_pred CCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEecc
Q 047833 80 TDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~~ 147 (473)
-....+.+.+.++++ +||++|+-.+.. ....+-+...-.++.++++
T Consensus 65 ---------------~~~~~~~~~~~l~~~-------~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHps 111 (200)
T PRK05647 65 ---------------REAFDAALVEALDAY-------QPDLVVLAGFMRILGPTFVSAYEGRIINIHPS 111 (200)
T ss_pred ---------------hhHhHHHHHHHHHHh-------CcCEEEhHHhhhhCCHHHHhhccCCEEEEeCc
Confidence 011233556778888 899998865432 2223333344445666544
No 187
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=73.20 E-value=6.2 Score=31.40 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=25.2
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 6 ETIVLFPFMAQG---HIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 6 ~~il~~~~~~~G---H~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+||+|+--|-.+ .-.-.++|+.+..+ |||+|.++++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~-RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR-RGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH-TT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH-CCCEEEEEEcCcE
Confidence 356666554332 23457899999999 9999999987765
No 188
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=73.00 E-value=9 Score=30.30 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
.|+++.+.+..-|-.-+..|+..|++ +||+|.++.....
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDANVP 39 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEESSB-
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECCCCC
Confidence 37899999999999999999999999 9999999865543
No 189
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=72.91 E-value=7.5 Score=37.94 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=76.9
Q ss_pred HHHhCCCceEEEECCCCCCCccccc--cccCCcEEEe-cccChHHhhccCCcceeEeccCcchHHHHHhhCCcEEecccc
Q 047833 303 ALEASGKNFIWVVRPPIGFDINSEI--KCSGQGLVVH-KWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLA 379 (473)
Q Consensus 303 al~~~~~~~i~~~~~~~~~~~~~~~--~~~~~nv~~~-~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~ 379 (473)
.+...++.+++...+.. ..... .....++... +..+-.++|..+++ +||--. ..+.|.+..++|++.....
T Consensus 224 ~~~~~~~~li~k~Hp~~---~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D 297 (369)
T PF04464_consen 224 FLLKNNYVLIIKPHPNM---KKKFKDFKEDNSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPD 297 (369)
T ss_dssp HHHTTTEEEEE--SHHH---HTT----TT-TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TT
T ss_pred HHhCCCcEEEEEeCchh---hhchhhhhccCCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEecc
Confidence 56666777776663221 00010 2234566653 45568899988884 999874 4888999999999988766
Q ss_pred ccchhhHHHHHHhhcceEEEecC--CCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHH
Q 047833 380 AEQFYNSKLLEEEIGVCVEVARG--KSSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKA 457 (473)
Q Consensus 380 ~DQ~~nA~~v~~~lG~g~~l~~~--~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~ 457 (473)
.|.+... + |.-...... ...--+.++|.++|+.+++++ . .++++-+++.+++-.- .+|.++.|.
T Consensus 298 ~~~Y~~~-----r-g~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~-~--~~~~~~~~~~~~~~~~-----~Dg~s~eri 363 (369)
T PF04464_consen 298 LEEYEKE-----R-GFYFDYEEDLPGPIVYNFEELIEAIENIIENP-D--EYKEKREKFRDKFFKY-----NDGNSSERI 363 (369)
T ss_dssp TTTTTTT-----S-SBSS-TTTSSSS-EESSHHHHHHHHTTHHHHH-H--HTHHHHHHHHHHHSTT-------S-HHHHH
T ss_pred HHHHhhc-----c-CCCCchHhhCCCceeCCHHHHHHHHHhhhhCC-H--HHHHHHHHHHHHhCCC-----CCchHHHHH
Confidence 6655322 2 333322110 012346789999999998876 1 3556666777777443 667777777
Q ss_pred HHHHH
Q 047833 458 MNQFL 462 (473)
Q Consensus 458 ~~~~~ 462 (473)
++.++
T Consensus 364 ~~~I~ 368 (369)
T PF04464_consen 364 VNYIF 368 (369)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76665
No 190
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=72.60 E-value=40 Score=30.85 Aligned_cols=91 Identities=11% Similarity=-0.057 Sum_probs=55.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
|.+|+++.+-+-| ..||+.|.+ +|+.|++-+...... ... .++....-. |.
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~-~g~~v~~Svat~~g~-~~~-----~~~~v~~G~-------l~---------- 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAA-AGVDIVLSLAGRTGG-PAD-----LPGPVRVGG-------FG---------- 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHh-CCCeEEEEEccCCCC-ccc-----CCceEEECC-------CC----------
Confidence 4578888766555 478999999 999888766444322 111 111111100 10
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch-------HHHHHHHhCCceEEEe
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW-------CKEIAQEYGIFHAIFI 145 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~-------~~~~A~~~giP~v~~~ 145 (473)
-.+.+.+++++. ++++||=-.. +. +..+|+.+|||++.+.
T Consensus 53 -------------~~~~l~~~l~~~-------~i~~VIDATH-PfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 -------------GAEGLAAYLREE-------GIDLVIDATH-PYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred -------------CHHHHHHHHHHC-------CCCEEEECCC-ccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 134556777777 8888764432 32 3478899999999973
No 191
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.32 E-value=30 Score=32.05 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=48.6
Q ss_pred HHHHHHHHhC-CCceEEEECCCC-CCCccc--ccc-ccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhhCCc
Q 047833 298 MQLAMALEAS-GKNFIWVVRPPI-GFDINS--EIK-CSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSHGVP 372 (473)
Q Consensus 298 ~~~~~al~~~-~~~~i~~~~~~~-~~~~~~--~~~-~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP 372 (473)
..+..+++.. +.+++++..+.. ...... ... ..+..+.+.+-++-.+++.+++ +|||-.+ .+-.||+.+|+|
T Consensus 144 ~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkp 220 (269)
T PF05159_consen 144 DMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKP 220 (269)
T ss_pred HHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCc
Confidence 3344444443 688888886521 000001 111 2334455667788889999988 4777654 477899999999
Q ss_pred EEeccc
Q 047833 373 IIGWPL 378 (473)
Q Consensus 373 ~l~~P~ 378 (473)
++++..
T Consensus 221 Vi~~G~ 226 (269)
T PF05159_consen 221 VIVFGR 226 (269)
T ss_pred eEEecC
Confidence 999864
No 192
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.48 E-value=87 Score=29.05 Aligned_cols=130 Identities=16% Similarity=0.257 Sum_probs=72.4
Q ss_pred EEEEeeCCccc-CCHHHHHHHHHHHHhCC--CceEEEECCCCCC--Ccc-c-cccccCCcEEEecccC---hHHhhccCC
Q 047833 281 VLYVSFGSQNT-IATSQMMQLAMALEASG--KNFIWVVRPPIGF--DIN-S-EIKCSGQGLVVHKWAP---QVEILSHRS 350 (473)
Q Consensus 281 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~--~~~-~-~~~~~~~nv~~~~~vp---~~~ll~~~~ 350 (473)
.+++..|.... ...+.+...+..+.... ..++++.... .. ... . .......++....+++ ...++..++
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGP-ERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCC-ccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCC
Confidence 46667777554 34444444444444433 3444444322 10 000 1 1112246788888888 334565565
Q ss_pred cceeEec---cCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSH---CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~H---GG~g-t~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+ +|.- .|.| ++.|++++|+|++.... ......+. .-+.|. +.. ..+.+++.+++..++++.
T Consensus 279 ~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~-~~~~g~-~~~----~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 279 V--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVE-DGETGL-LVP----PGDVEELADALEQLLEDP 343 (381)
T ss_pred E--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhc-CCCceE-ecC----CCCHHHHHHHHHHHhcCH
Confidence 4 5555 3554 45999999999976643 32333333 302466 433 227899999999999987
No 193
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.29 E-value=33 Score=32.04 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=44.3
Q ss_pred chHH-HHHhhCCcEEeccccccchh--hHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCChhhHHHHHHHH
Q 047833 361 NSVL-EALSHGVPIIGWPLAAEQFY--NSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETEKGIELRKNAY 434 (473)
Q Consensus 361 gt~~-eal~~GvP~l~~P~~~DQ~~--nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~ 434 (473)
||.. .++--|+|+|.+|-.+-|+. .|.+=.+.||+.+.+-. ..++.-..++.++|.|+ .+.+.++
T Consensus 320 GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~~~q~ll~dp----~r~~air 387 (412)
T COG4370 320 GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQAVQELLGDP----QRLTAIR 387 (412)
T ss_pred cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHHHHHHHhcCh----HHHHHHH
Confidence 4433 45778999999999988864 56666777888888764 23333334455599999 5555555
No 194
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=71.06 E-value=22 Score=26.56 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhhHH
Q 047833 22 FLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKPH 101 (473)
Q Consensus 22 ~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (473)
++.+++.|.+ .|++|. + ++...+.+++ .|+.+...-.. ... . .+.
T Consensus 2 ~~~~~~~l~~-lG~~i~-A-T~gTa~~L~~-----~Gi~~~~~~~k-----i~~------~----------------~~~ 46 (90)
T smart00851 2 LVELAKRLAE-LGFELV-A-TGGTAKFLRE-----AGLPVKTLHPK-----VHG------G----------------ILA 46 (90)
T ss_pred HHHHHHHHHH-CCCEEE-E-ccHHHHHHHH-----CCCcceeccCC-----CCC------C----------------CHH
Confidence 4688999999 999993 4 4556677777 55554321100 000 0 012
Q ss_pred HHHHHHhHhhhcCCCCccEEEECCCc--c-------hHHHHHHHhCCceEE
Q 047833 102 FKKLVNDLIDEQNGYKPLCIITDMFF--G-------WCKEIAQEYGIFHAI 143 (473)
Q Consensus 102 ~~~~l~~~~~~~~~~~pD~Vv~d~~~--~-------~~~~~A~~~giP~v~ 143 (473)
+.+.+++. +.|+||....- . ....+|...+||+++
T Consensus 47 i~~~i~~g-------~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 47 ILDLIKNG-------EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred HHHHhcCC-------CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 45556666 89999996431 1 123578888999863
No 195
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=70.35 E-value=30 Score=26.94 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHH
Q 047833 17 GHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATL 96 (473)
Q Consensus 17 GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (473)
.+-.-++.+++.|.+ .|+++. +++...+.+++ .++.+..+... ..
T Consensus 10 ~~k~~~~~~~~~l~~-~G~~l~--aT~gT~~~l~~-----~gi~~~~v~~~------~~--------------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAE-LGFKLV--ATEGTAKYLQE-----AGIPVEVVNKV------SE--------------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHH-CCCEEE--EchHHHHHHHH-----cCCeEEEEeec------CC---------------------
Confidence 455678899999999 999993 35667777777 66676655422 00
Q ss_pred hhhHHHHHHHHhHhhhcCCCCccEEEECCCc-------chHHHHHHHhCCceEE
Q 047833 97 SFKPHFKKLVNDLIDEQNGYKPLCIITDMFF-------GWCKEIAQEYGIFHAI 143 (473)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~-------~~~~~~A~~~giP~v~ 143 (473)
..+.+.+.+++. ++|+||...-. ......|-..|||+++
T Consensus 55 -~~~~i~~~i~~~-------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -GRPNIVDLIKNG-------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -CchhHHHHHHcC-------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 123345666666 89999985322 2334678889999996
No 196
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=69.29 E-value=15 Score=36.60 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+++|||++..+++-| +|++.|++ -++-..+++.+.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~-~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRK-SNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHh-CCCCCEEEEECCc
Confidence 467999999998877 68999999 7755444444443
No 197
>PRK14098 glycogen synthase; Provisional
Probab=69.18 E-value=6.5 Score=40.13 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 1 MAQRKETIVLFPF--------MAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 1 ~~~~~~~il~~~~--------~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|.++|+||++++. |+.|++ +-+|.++|++ +||+|.++.|..
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~-~g~~v~v~~P~y 49 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADF--MASFPQALEE-EGFEARIMMPKY 49 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHH--HHHHHHHHHH-CCCeEEEEcCCC
Confidence 5677899998764 334444 4578899999 999999999755
No 198
>PRK06849 hypothetical protein; Provisional
Probab=68.70 E-value=26 Score=34.53 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
++++|+++... ....+.+|+.|.+ .||+|+++.....
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~-~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHN-AGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 45678877533 3368999999999 9999999976653
No 199
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.19 E-value=8 Score=36.54 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=39.6
Q ss_pred cceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||++.+++. ++|++.+- .|-..-. ...+.+++.++++++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN-----------------~G~lGFL---t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTIN-----------------TGHLGFL---TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEe-----------------CCCCccc---ccCCHHHHHHHHHHHHcCC
Confidence 4479999999999999875 78988873 2211111 3566789999999999886
No 200
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=68.16 E-value=36 Score=31.09 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 21 PFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 21 p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
-+.+|+++|++ . |+|+++.|...+.-
T Consensus 15 Gi~aL~~~l~~-~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 15 GIRALAEALRE-L-ADVTVVAPDRERSG 40 (250)
T ss_pred hHHHHHHHHHh-C-CCEEEEeCCCCCcC
Confidence 36788999999 8 79999988876543
No 201
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=67.42 E-value=7.7 Score=33.58 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|.||++...|+.|=+. ...+.+.|++ +|++|.++.++.....+..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~-~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTK-RGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHH-CCCEEEEEEChhHHHHcCH
Confidence 3578888777766665 8999999999 9999999998887666553
No 202
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.36 E-value=11 Score=30.86 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=39.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++||++.+.+.-||=...--+++.|++ .|.+|...+.-...+.+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g~~~tp~e~v 56 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLGLFQTPEEAV 56 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh-CCceEEecCCcCCHHHHH
Confidence 5789999999999999999999999999 999999987665544443
No 203
>PRK05595 replicative DNA helicase; Provisional
Probab=67.36 E-value=35 Score=34.35 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..-.+.+|..+. + .|+.|.|++.+-..+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCCCHHHHH
Confidence 45677789999999999998765 6 799999999887655443
No 204
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.90 E-value=12 Score=35.03 Aligned_cols=53 Identities=6% Similarity=0.029 Sum_probs=38.4
Q ss_pred cceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+-||-||++.+++. ++|++.+- .|-..-. ..++.+++.++++++++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFL---t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIH-----------------AGHLGFL---TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEe-----------------CCCcccC---CcCCHHHHHHHHHHHHcCC
Confidence 3469999999999988763 77888773 2221112 4567788999999998876
No 205
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=66.78 E-value=6.4 Score=29.85 Aligned_cols=85 Identities=20% Similarity=0.118 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhhHH
Q 047833 22 FLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKPH 101 (473)
Q Consensus 22 ~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (473)
++.+|+.|.+ .||++ ++++.....+++ .++.+..+-.. .+.+. .+. ....
T Consensus 2 ~~~~a~~l~~-lG~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~---~~~~~-------~~~------------g~~~ 51 (95)
T PF02142_consen 2 IVPLAKRLAE-LGFEI--YATEGTAKFLKE-----HGIEVTEVVNK---IGEGE-------SPD------------GRVQ 51 (95)
T ss_dssp HHHHHHHHHH-TTSEE--EEEHHHHHHHHH-----TT--EEECCEE---HSTG--------GGT------------HCHH
T ss_pred HHHHHHHHHH-CCCEE--EEChHHHHHHHH-----cCCCceeeeee---cccCc-------cCC------------chhH
Confidence 5789999999 99665 456777788888 66675444311 00000 000 0014
Q ss_pred HHHHHHhHhhhcCCCCccEEEECCCcch------H---HHHHHHhCCceEE
Q 047833 102 FKKLVNDLIDEQNGYKPLCIITDMFFGW------C---KEIAQEYGIFHAI 143 (473)
Q Consensus 102 ~~~~l~~~~~~~~~~~pD~Vv~d~~~~~------~---~~~A~~~giP~v~ 143 (473)
+.+++++. +.|+||....-.. + ..+|...+||+++
T Consensus 52 i~~~i~~~-------~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 52 IMDLIKNG-------KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHHTT-------SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHHHHHcC-------CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 56777777 8999999854331 1 2577888998863
No 206
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=66.75 E-value=50 Score=30.25 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=53.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
+||+++.+-+-| ..||+.|.+ +|+ |++-+..+....+..... ...... .. ++.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~-~g~-v~~sv~t~~g~~~~~~~~--~~~~v~-~G------~lg----------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAE-AGY-VIVSVATSYGGELLKPEL--PGLEVR-VG------RLG----------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHh-cCC-EEEEEEhhhhHhhhcccc--CCceEE-EC------CCC-----------
Confidence 478887766555 478999999 998 555443343333222110 011111 00 110
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch-------HHHHHHHhCCceEEEe
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW-------CKEIAQEYGIFHAIFI 145 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~-------~~~~A~~~giP~v~~~ 145 (473)
..+.+.+++++. ++++||=-.. +. +..+|+.+|||++.+-
T Consensus 54 ------------~~~~l~~~l~~~-------~i~~vIDATH-PfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 ------------DEEGLAEFLREN-------GIDAVIDATH-PFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred ------------CHHHHHHHHHhC-------CCcEEEECCC-chHHHHHHHHHHHHhhcCcceEEEE
Confidence 134556777877 8888775433 32 3478899999999973
No 207
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=66.60 E-value=7.9 Score=33.56 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTN-KYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~r-Gh~Vt~~~~~~~~~~v~~ 51 (473)
|+||++.-.|+-| .+=...+.+.|++ . ||+|.++.++.....+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k-~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRD-VGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHh-hcCCeEEEEECHHHHHHHHH
Confidence 4578887777777 6669999999998 7 999999999988777665
No 208
>PRK08760 replicative DNA helicase; Provisional
Probab=66.37 E-value=32 Score=34.89 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v 49 (473)
+++...|+.|-..-.+.+|.... + .|+.|.|++.+-..+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHHHH
Confidence 46777789999999999998876 4 59999999987765543
No 209
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=66.21 E-value=10 Score=32.33 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=29.1
Q ss_pred HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHH-H--H--HHHh-CCceEEEec
Q 047833 96 LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCK-E--I--AQEY-GIFHAIFIG 146 (473)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~-~--~--A~~~-giP~v~~~~ 146 (473)
....+.+.+++++. +||+||+...+.... + + ...+ ++|.+.+.+
T Consensus 75 ~~~~~~l~~~l~~~-------~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 75 RLFARRLIRLLREF-------QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHhhc-------CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 34556788899998 999999997765333 1 1 1223 577776643
No 210
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=65.13 E-value=44 Score=33.31 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.9
Q ss_pred HHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 104 KLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 104 ~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
+.+++. +||++|.... +..+|+++|||++.+.
T Consensus 344 ~~~~~~-------~pDl~Ig~s~---~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEY-------RPDLAIGTTP---LVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhc-------CCCEEEeCCh---hhHHHHHhCCCEEEec
Confidence 445566 8999999843 6789999999999964
No 211
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=65.04 E-value=32 Score=33.68 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
=|++-.-|+-|--.=++.++..|++ +| .|.+++.+.....++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCHHHHH
Confidence 3556666889999999999999999 99 999999998766554
No 212
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=64.85 E-value=14 Score=32.47 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
+.+|++.+.++-.|-....-++..|+. .|++|++++..-..+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~ 124 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEE 124 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHH
Confidence 568999999999999999999999999 9999999886544433
No 213
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=64.63 E-value=15 Score=31.59 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=47.6
Q ss_pred ccCCcceeEeccCcchHHHHHhhCCcEEeccccc-----------------------cchhhHHHHHHhhcceEEEecCC
Q 047833 347 SHRSVSVFLSHCGWNSVLEALSHGVPIIGWPLAA-----------------------EQFYNSKLLEEEIGVCVEVARGK 403 (473)
Q Consensus 347 ~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~-----------------------DQ~~nA~~v~~~lG~g~~l~~~~ 403 (473)
.+..++.+|++||...+..... ++|+|-+|..+ ........+.+.||+-+..-.
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-- 107 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-- 107 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE--
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE--
Confidence 3455667999999988888877 99999988732 244457777778787766654
Q ss_pred CCccCHHHHHHHHHHHHcC
Q 047833 404 SSEVLKKDIAAKIELVMNE 422 (473)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~ 422 (473)
--+.+++...|.++..+
T Consensus 108 --~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 108 --YDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp --ESSHHHHHHHHHHHHHT
T ss_pred --ECCHHHHHHHHHHHHHc
Confidence 45678899999988765
No 214
>PRK06321 replicative DNA helicase; Provisional
Probab=64.46 E-value=54 Score=33.26 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..-.+.+|.... + .|+.|.|++-+-..+.+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHH
Confidence 46777789999999999999886 5 699999999877655443
No 215
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=63.97 E-value=19 Score=33.05 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTN-KYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~r-Gh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|--.-.+.+|..+.. . |+.|.|++.+...+.+.
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~-~~~~~vly~SlEm~~~~l~ 64 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAAL-NGGYPVLYFSLEMSEEELA 64 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-TTSSEEEEEESSS-HHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHH-hcCCeEEEEcCCCCHHHHH
Confidence 457777899999999999999988 7 69999999887665543
No 216
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.96 E-value=16 Score=32.06 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=44.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~ 65 (473)
+.+|++.+.++-.|-....-++..|+. .|++|++++.....+.+.....+ .+.++..+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~vp~e~~v~~~~~-~~pd~v~lS 142 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRDVPIDTVVEKVKK-EKPLMLTGS 142 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEc
Confidence 468999999999999999999999999 99999999877665444332111 444555444
No 217
>PRK06988 putative formyltransferase; Provisional
Probab=63.68 E-value=56 Score=31.10 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|+||+|+..+. -.+...++|.+ +||+|..+.+.+
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~-~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLA-RGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHh-CCCCEEEEEcCC
Confidence 46999987663 34566778889 999988776654
No 218
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=63.64 E-value=45 Score=30.52 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=24.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
|||+.-=-+. |---+.+|+++|++ +|+|+++.|...+.-
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~--~~~V~VvAP~~~qSg 40 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLSE--KHEVFVVAPDKERSA 40 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHHh--CCcEEEEccCCCCcc
Confidence 5555442211 22336677888865 579999998876543
No 219
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=63.57 E-value=45 Score=30.75 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=21.6
Q ss_pred CccEEEEC----------CCcc---hHHHHHHHhCCceEEEec
Q 047833 117 KPLCIITD----------MFFG---WCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 117 ~pD~Vv~d----------~~~~---~~~~~A~~~giP~v~~~~ 146 (473)
+||+||+. .++. +++.-|..+|||.|.+|.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 79999985 2222 345667779999999974
No 220
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.42 E-value=70 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
.+.+.++.. +||++|.... ...+|+++|||++.+.
T Consensus 368 e~~~~i~~~-------~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE-------PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc-------CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 445667777 8999999964 6789999999999864
No 221
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=62.89 E-value=29 Score=34.64 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=53.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc----chhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL----NLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDS 82 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (473)
|+.++..+.. .+.+++.|.+ -|-+|..+++.. +.+..... +. .+........+
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~e-lGmevv~~~t~~~~~~~~~~~~~~-----------~~------~~~~~v~~~~d 343 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLE-SGADVPYVGTAIPRTAWGAEDKRW-----------LE------MLGVEVKYRAS 343 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHH-CCCEEEEEecCCCCccccHHHHHH-----------HH------hcCCCceeccC
Confidence 6666666544 8899999999 999999986653 11111110 00 00000000000
Q ss_pred CChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 83 VPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
..+.+ +.+++. +||++|.... +..+|+++|||++.+.
T Consensus 344 ---------------l~~~~-~~l~~~-------~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 344 ---------------LEDDM-EAVLEF-------EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred ---------------HHHHH-HHHhhC-------CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 00111 445666 8999999954 5678999999999974
No 222
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.87 E-value=15 Score=29.28 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=36.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
|+++.+.++-.|-....-++.-|+. .|++|++.+.....+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~vp~e~ 41 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGLRQTPEE 41 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHH
Confidence 5889999999999999999999999 9999999997654443
No 223
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.82 E-value=15 Score=34.61 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=38.9
Q ss_pred cceeEeccCcchHHHHHh----hCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||++.+.+ .++|++.+-.. + +|-- ..++.+++.+++++++++.
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL------~~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG------------H--LGFL------TQIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecC------------C--CeEe------eccCHHHHHHHHHHHHcCC
Confidence 346999999999999975 37898887321 1 2211 3467789999999999876
No 224
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=62.73 E-value=17 Score=32.77 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=35.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.-+++...++.|--.-...++....+ +|..|.|++.+...+.+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTSKSY 68 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHH
Confidence 44567777899999999999888888 99999999987765443
No 225
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=62.61 E-value=11 Score=34.77 Aligned_cols=46 Identities=28% Similarity=0.326 Sum_probs=40.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
...++|+..++.|-..=..+||.+|.+ +|+.|+|++.+.+...+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHH
Confidence 347889988998988889999999999 9999999999998877776
No 226
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=62.38 E-value=49 Score=25.85 Aligned_cols=85 Identities=15% Similarity=0.013 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHh
Q 047833 18 HIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLS 97 (473)
Q Consensus 18 H~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (473)
+=.-++.+|+.|.+ .||++. +++.....+++ .|+.+..+... ..+
T Consensus 10 ~K~~~~~~a~~l~~-~G~~i~--AT~gTa~~L~~-----~Gi~~~~v~~~------~~~--------------------- 54 (112)
T cd00532 10 VKAMLVDLAPKLSS-DGFPLF--ATGGTSRVLAD-----AGIPVRAVSKR------HED--------------------- 54 (112)
T ss_pred cHHHHHHHHHHHHH-CCCEEE--ECcHHHHHHHH-----cCCceEEEEec------CCC---------------------
Confidence 44567899999999 999983 45666677777 56666655421 110
Q ss_pred hhHHHHHHHHh-HhhhcCCCCccEEEECC--Cc-----chH---HHHHHHhCCceEEE
Q 047833 98 FKPHFKKLVND-LIDEQNGYKPLCIITDM--FF-----GWC---KEIAQEYGIFHAIF 144 (473)
Q Consensus 98 ~~~~~~~~l~~-~~~~~~~~~pD~Vv~d~--~~-----~~~---~~~A~~~giP~v~~ 144 (473)
..+.+.+.+++ . +.|+||.-. .. .-+ .-+|-..+||+++-
T Consensus 55 g~~~i~~~i~~~g-------~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 GEPTVDAAIAEKG-------KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CCcHHHHHHhCCC-------CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 12344566666 6 899999843 21 112 25688889999983
No 227
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=62.28 E-value=57 Score=29.99 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=29.8
Q ss_pred hHHHHHHHHhHhhhcCCCCccEEEECCCcc------hHHHHHHHhCCceEEEe
Q 047833 99 KPHFKKLVNDLIDEQNGYKPLCIITDMFFG------WCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~------~~~~~A~~~giP~v~~~ 145 (473)
...+.+.++.. ++|+|++.--+. -+..+|+.+|+|+++..
T Consensus 100 a~~Laa~~~~~-------~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 100 AKALAAAVKKI-------GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HHHHHHHHHhc-------CCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 34456677777 899999863222 46799999999999964
No 228
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=62.16 E-value=48 Score=33.22 Aligned_cols=88 Identities=14% Similarity=0.007 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
..|+++...+ ...+.+++.|.+ .|-+|..+.........+. ++ ...-...+
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~e-lGm~v~~~~~~~~~~~~~~------------~~---------~~~~~~~D-- 361 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTS-MGAQIVAAVTTTGSPLLQK------------LP---------VETVVIGD-- 361 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHH-CCCEEEEEEeCCCCHHHHh------------CC---------cCcEEeCC--
Confidence 3466666533 466888888999 9999887765543221111 01 00000000
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
...+.+++++. ++|+++.+.. +..+|+++|||++.+.
T Consensus 362 --------------~~~l~~~i~~~-------~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 362 --------------LEDLEDLACAA-------GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred --------------HHHHHHHHhhc-------CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 02446677777 8999999964 5789999999999863
No 229
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=61.82 E-value=87 Score=26.51 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhHhhhcCCCCccEEEECCCcc---hHHHHHHHhCCceEEEe
Q 047833 98 FKPHFKKLVNDLIDEQNGYKPLCIITDMFFG---WCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~---~~~~~A~~~giP~v~~~ 145 (473)
....+.+++++. +||+|+...... .+..+|.++|.|++.-.
T Consensus 71 ~a~al~~~i~~~-------~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv 114 (168)
T cd01715 71 YAPALVALAKKE-------KPSHILAGATSFGKDLAPRVAAKLDVGLISDV 114 (168)
T ss_pred HHHHHHHHHHhc-------CCCEEEECCCccccchHHHHHHHhCCCceeeE
Confidence 344556667776 899999986544 46689999999999854
No 230
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.31 E-value=13 Score=34.85 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=39.0
Q ss_pred ceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 352 SVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+++|+=||-||++.+++. ++|++.+-. |-..-. ...+.+++.+++++++++.
T Consensus 66 dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~-----------------G~lGFL---t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 66 DMVISIGGDGTFLRTATYVGNSNIPILGINT-----------------GRLGFL---ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEec-----------------CCCCcc---cccCHHHHHHHHHHHHcCC
Confidence 469999999999999873 788888732 211111 4567788999999999886
No 231
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=61.11 E-value=16 Score=37.23 Aligned_cols=45 Identities=11% Similarity=-0.013 Sum_probs=37.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
.-+++...++.|--.-.+.++.+..+ +|+.|.+++.+...+.+..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLR 308 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHH
Confidence 34667777899999999999999999 9999999998887665544
No 232
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=60.99 E-value=24 Score=30.25 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.1
Q ss_pred EEcCCCccCHHHHHHHHHHHHhC
Q 047833 10 LFPFMAQGHIIPFLALALHLEKT 32 (473)
Q Consensus 10 ~~~~~~~GH~~p~l~La~~L~~~ 32 (473)
++-.|+.||..=|++|-+.|.+.
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhh
Confidence 34457889999999999999873
No 233
>PRK09165 replicative DNA helicase; Provisional
Probab=60.81 E-value=56 Score=33.43 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC---------------CcEEEEEcCCcchhhhhc
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTN---------------KYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~r---------------Gh~Vt~~~~~~~~~~v~~ 51 (473)
+++...|+.|-..-.+.+|..... + |..|.|++.+-..+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~-~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAK-AYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH-hhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 467777899999999998888765 3 789999998887655443
No 234
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=60.72 E-value=8.5 Score=34.74 Aligned_cols=37 Identities=16% Similarity=0.032 Sum_probs=29.1
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEcCC
Q 047833 6 ETIVLFPFMAQGHIIPF------------LALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~------------l~La~~L~~~rGh~Vt~~~~~ 43 (473)
+||++.++|++=.+.|. .+||++|.+ +||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~-~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLA-AGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHh-CCCEEEEEECc
Confidence 36788888777777663 488999999 99999998743
No 235
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.48 E-value=17 Score=34.46 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=39.6
Q ss_pred cceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||++.+++. ++|++.+... .+|-- .....+++.+++++++++.
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL------~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFL------AEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCcee------ccCCHHHHHHHHHHHHcCC
Confidence 3469999999999998764 7898888531 12221 3466788999999999876
No 236
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=60.24 E-value=1e+02 Score=28.06 Aligned_cols=92 Identities=15% Similarity=0.008 Sum_probs=55.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVP 84 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (473)
+++|+++.+-+- ...|++.|.. .++.+++.+....-........ - .... .
T Consensus 2 ~~~ilvlGGT~D-----ar~la~~L~~-~~~~~~~ss~t~~g~~l~~~~~----~--~~~~---------------G--- 51 (257)
T COG2099 2 MMRILLLGGTSD-----ARALAKKLAA-APVDIILSSLTGYGAKLAEQIG----P--VRVG---------------G--- 51 (257)
T ss_pred CceEEEEeccHH-----HHHHHHHhhc-cCccEEEEEcccccccchhccC----C--eeec---------------C---
Confidence 346666654322 4789999999 9988888775544222222100 0 0000 0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch------HHHHHHHhCCceEEE
Q 047833 85 YHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW------CKEIAQEYGIFHAIF 144 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~------~~~~A~~~giP~v~~ 144 (473)
....+.+.+++++. +.|+||=-..=++ +..+|+..|||++.+
T Consensus 52 -----------~l~~e~l~~~l~e~-------~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 52 -----------FLGAEGLAAFLREE-------GIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred -----------cCCHHHHHHHHHHc-------CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 11245668889998 8898775543222 347899999999997
No 237
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=59.65 E-value=86 Score=31.66 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=27.6
Q ss_pred HHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEE
Q 047833 100 PHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIF 144 (473)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~ 144 (473)
..+.+++++. +||++|.... ...+|+++|||++.+
T Consensus 385 ~e~~~~i~~~-------~pDl~ig~~~---~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY-------KADLLIAGGK---ERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc-------CCCEEEEccc---hHHHHHhcCCCEEEc
Confidence 3456777777 8999998743 467888999999886
No 238
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.62 E-value=22 Score=29.02 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=43.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~ 65 (473)
.+|++.+.++-+|-.----++..|++ .|++|+..+.....+.+.++..+ .+..+..+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~~e~~v~aa~~-~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSPQEEFIKAAIE-TKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEe
Confidence 58999999999999999999999999 99999999876665444332111 444555444
No 239
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=58.80 E-value=28 Score=32.00 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+++..-|+.|...-...+|..+++ .|++|.++.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~-~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH-CCCCceEEeCCCc
Confidence 345556888999999999999999 9999999987664
No 240
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.56 E-value=22 Score=33.83 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=36.7
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEE
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLL 62 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~ 62 (473)
|...++||+++..|+.| ..+|..|.+ .||+|++++... .+.+.. .++.+.
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~-~g~~V~~~~r~~-~~~~~~-----~g~~~~ 50 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLAR-AGFDVHFLLRSD-YEAVRE-----NGLQVD 50 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHH-CCCeEEEEEeCC-HHHHHh-----CCeEEE
Confidence 55556799999888777 457888999 999999998755 444445 455554
No 241
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=58.55 E-value=75 Score=30.24 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+||+|+..+.. .+...++|.+ +||+|..+.+.+
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~-~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELRE-DNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHh-CCCcEEEEEcCC
Confidence 37888876643 3667788999 999998666543
No 242
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=57.76 E-value=23 Score=33.79 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=31.9
Q ss_pred HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchH----------HHHHHHhCCceEEEe
Q 047833 96 LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWC----------KEIAQEYGIFHAIFI 145 (473)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~----------~~~A~~~giP~v~~~ 145 (473)
+.....+.+.++.. +||+||+.+.+..+ ..+.+.++||.++-.
T Consensus 66 eea~~~i~~mv~~~-------~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 66 EEALKKILEMVKKL-------KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 45566677778888 99999999765531 245678999999853
No 243
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=57.52 E-value=76 Score=24.89 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHh
Q 047833 18 HIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLS 97 (473)
Q Consensus 18 H~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (473)
+-.-++.+++.|.+ .|++|. +++...+.+.+ .++.+..+... .+.+. .+
T Consensus 11 dk~~~~~~a~~l~~-~G~~i~--aT~gTa~~L~~-----~gi~~~~v~~~---~~~~~-----~~--------------- 59 (116)
T cd01423 11 SKPELLPTAQKLSK-LGYKLY--ATEGTADFLLE-----NGIPVTPVAWP---SEEPQ-----ND--------------- 59 (116)
T ss_pred cchhHHHHHHHHHH-CCCEEE--EccHHHHHHHH-----cCCCceEeeec---cCCCC-----CC---------------
Confidence 55668899999999 999983 45676667776 45555444210 01100 00
Q ss_pred hhHHHHHHHHhHhhhcCCCCccEEEECCC---------cchHHHHHHHhCCceEE
Q 047833 98 FKPHFKKLVNDLIDEQNGYKPLCIITDMF---------FGWCKEIAQEYGIFHAI 143 (473)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~---------~~~~~~~A~~~giP~v~ 143 (473)
.+.+.+++++. ++|+||..+. .......|-.+|||+++
T Consensus 60 -~~~i~~~i~~~-------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -KPSLRELLAEG-------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -chhHHHHHHcC-------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 13445667766 8999999532 12234678889999975
No 244
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=57.47 E-value=30 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=31.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVN 41 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~ 41 (473)
.-++++..|...|...+-.+|+.|.+ .|+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~-~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAE-QGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHh-CCCEEEEEC
Confidence 46788888999999999999999999 999998763
No 245
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.44 E-value=19 Score=33.81 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=38.3
Q ss_pred cceeEeccCcchHHHHHh----hCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||++.+++ .++|++.+-.. .||.- ..++.+++.+++++++++.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G------------~lGFl--------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG------------NLGFL--------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC------------CCCcc--------cccCHHHHHHHHHHHHcCC
Confidence 346999999999999985 36787776321 11221 3456788999999999876
No 246
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=57.42 E-value=85 Score=29.98 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=58.1
Q ss_pred cEEEEEcCCCcc---C--HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQG---H--IIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 6 ~~il~~~~~~~G---H--~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
.-|++.|+.+.| . ..-+..|++.|.+ +|++|.+++++...+..+.... . .+. ... ...
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-~~~~ivl~G~~~e~~~~~~i~~---~-----~~~-----~~~---~l~ 237 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLID-QGYQVVLFGSAKDHPAGNEIEA---L-----LPG-----ELR---NLA 237 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-CCCEEEEEEChhhHHHHHHHHH---h-----CCc-----ccc---cCC
Confidence 345666654333 1 2357899999999 9999999988776554433110 0 000 000 000
Q ss_pred CCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 81 DSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
.. ....++..+++. .|++|+... +.+.+|..+|+|+|.++.
T Consensus 238 g~--------------~sL~el~ali~~---------a~l~I~~DS--Gp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 238 GE--------------TSLDEAVDLIAL---------AKAVVTNDS--GLMHVAAALNRPLVALYG 278 (334)
T ss_pred CC--------------CCHHHHHHHHHh---------CCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 00 012233344444 499999854 458999999999999854
No 247
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.31 E-value=89 Score=30.62 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=27.1
Q ss_pred CCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFP-FMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~-~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+.+|.++. .|..|. .+|..|++ +||+|+++....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~-~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTL-SGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHH-CCCeEEEeCCCc
Confidence 346888886 676664 68899999 999999997543
No 248
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.22 E-value=21 Score=33.14 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=38.0
Q ss_pred cceeEeccCcchHHHHHhh-CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALSH-GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~-GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||+..+++. ..|++.+- .|-..-. ...+.+++.+++++++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN-----------------~G~lGFL---~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGIN-----------------MGGLGFL---TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEE-----------------CCCCccC---cccCHHHHHHHHHHHHcCC
Confidence 3479999999999999884 55766652 1211111 3567789999999999876
No 249
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=57.08 E-value=11 Score=37.90 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEcCCc
Q 047833 5 KETIVLFPFMAQGHIIPF------------LALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~------------l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
..||++..+|++=.+.|. .+||+++.. +|++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~-~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA-AGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH-CCCcEEEEeCCc
Confidence 458999999999999885 489999999 999999998665
No 250
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=56.71 E-value=71 Score=27.40 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=29.6
Q ss_pred hHHHHHHHHhHhhhcCCCCccEEEECCCcc---hHHHHHHHhCCceEEE
Q 047833 99 KPHFKKLVNDLIDEQNGYKPLCIITDMFFG---WCKEIAQEYGIFHAIF 144 (473)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~---~~~~~A~~~giP~v~~ 144 (473)
.+.+.+++++. +||+|+...... .+..+|.++|.|++.=
T Consensus 80 a~~l~~~i~~~-------~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 80 AKALAALIKKE-------KPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHHh-------CCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 34456667777 899999986554 3568999999999984
No 251
>PRK08506 replicative DNA helicase; Provisional
Probab=56.71 E-value=70 Score=32.47 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=35.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..-.+.+|..... .|+.|.|++.+-..+.+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCHHHHH
Confidence 467777899999999999999988 999999999887665443
No 252
>PRK07206 hypothetical protein; Provisional
Probab=56.49 E-value=41 Score=33.41 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=24.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+++++...+. ...+++++++ +|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~-~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKK-RGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHH-cCCeEEEEEcCC
Confidence 47887776433 3468999999 999999887554
No 253
>PRK05920 aromatic acid decarboxylase; Validated
Probab=56.02 E-value=17 Score=32.04 Aligned_cols=45 Identities=24% Similarity=0.168 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
++||++.-.|+.+= +=.+.+.+.|++ .||+|.++.++...+.+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~-~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLA-ADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHH-CCCEEEEEEChhHHHHHHH
Confidence 45787766665554 688999999999 9999999998887766643
No 254
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=55.98 E-value=1e+02 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhhc
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTN-KYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~r-Gh~Vt~~~~~~~~~~v~~ 51 (473)
+++...++.|=..-.+.++..+.. . |+.|.|++.+...+.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCCHHHHHH
Confidence 456666788999999999888887 7 999999998886654443
No 255
>PRK08006 replicative DNA helicase; Provisional
Probab=55.82 E-value=1.3e+02 Score=30.58 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v 49 (473)
+++...|+.|-..-.+.+|.... + .|+.|.|++.+-..+.+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHH
Confidence 46777899999999999998876 5 69999999988765544
No 256
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=55.75 E-value=94 Score=28.70 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=25.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
|||+.-=-+. |-.-+.+|+++|++ .| +|+++.|...+.-
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~-~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSP-LG-EVDVVAPETPKSA 40 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHh-CC-cEEEEccCCCCcc
Confidence 4555432211 33447788999998 88 7999988775443
No 257
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=55.58 E-value=1.2e+02 Score=30.10 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v 49 (473)
+++...|+.|-..-.+.+|..+. + .|+.|.|++.+-..+.+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHH
Confidence 46777789999999999998886 7 89999999987765544
No 258
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.55 E-value=25 Score=32.47 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=37.3
Q ss_pred ceeEeccCcchHHHHHhh-----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 352 SVFLSHCGWNSVLEALSH-----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~-----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+++|+=||-||++.+++. .+|++.+-.. |-..-. ...+.+++.+++.++++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~----------------G~lGFL---~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTK----------------DQLGFY---CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecC----------------CCCeEc---ccCCHHHHHHHHHHHHcCC
Confidence 369999999999999885 5566555320 211111 3567789999999999876
No 259
>PHA02542 41 41 helicase; Provisional
Probab=55.12 E-value=80 Score=32.04 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
+++..-|+.|-..-.+.+|....+ .|+.|.|++-+-..+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~-~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQ-QGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEEeccCCHHHH
Confidence 567777899999999999999988 99999999877765533
No 260
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=55.00 E-value=1.2e+02 Score=29.26 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=57.9
Q ss_pred cEEEEEcCCCcc---C--HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQG---H--IIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 6 ~~il~~~~~~~G---H--~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
.-|+|.|+.+.| + ..-+..|++.|.+ +|++|.+++.+...+..++... . .+.. .........
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~~e~~~~~~i~~---~-----~~~~----~~~~~~~l~ 247 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSAKDHEAGNEILA---A-----LNTE----QQAWCRNLA 247 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCHHhHHHHHHHHH---h-----cccc----cccceeecc
Confidence 346666644322 2 2247899999999 9999999988776654443110 0 0000 000000000
Q ss_pred CCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 81 DSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
... ...++..+++. .|++|+... +.+.+|..+|+|+|.++.
T Consensus 248 g~~--------------sL~el~ali~~---------a~l~I~nDT--Gp~HlAaA~g~P~valfG 288 (348)
T PRK10916 248 GET--------------QLEQAVILIAA---------CKAIVTNDS--GLMHVAAALNRPLVALYG 288 (348)
T ss_pred CCC--------------CHHHHHHHHHh---------CCEEEecCC--hHHHHHHHhCCCEEEEEC
Confidence 000 11222333443 499999864 458999999999999864
No 261
>PLN02470 acetolactate synthase
Probab=54.77 E-value=45 Score=34.94 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCcceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 349 RSVSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 349 ~~v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..+.++++|.|-| .+++|...++|+|++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 3455688888866 7889999999999985
No 262
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=54.68 E-value=37 Score=30.36 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccC--HHHHHHHHHHHHh
Q 047833 5 KETIVLFPFMAQGH--IIPFLALALHLEK 31 (473)
Q Consensus 5 ~~~il~~~~~~~GH--~~p~l~La~~L~~ 31 (473)
|+|||+..|+-+|. +||...+++.|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 45798888865544 9999999999965
No 263
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=54.67 E-value=28 Score=31.02 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.+.+|++.+.++-.|-....-++..|+. +|++|++++.....+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCCCCHHHH
Confidence 3569999999999999999999999999 99999999976654433
No 264
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.64 E-value=12 Score=31.52 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=27.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
||.++..|..|+ ++|..|.+ +||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH-CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH-cCCEEEEEeccH
Confidence 577787777775 78999999 999999999875
No 265
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=54.47 E-value=64 Score=31.26 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=57.5
Q ss_pred eEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCC-CCC--cc-c-cccccC-CcEEEe-cc-------------
Q 047833 280 SVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPI-GFD--IN-S-EIKCSG-QGLVVH-KW------------- 339 (473)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~-~~~--~~-~-~~~~~~-~nv~~~-~~------------- 339 (473)
.+++.+.||.+...+.. ++++.|++.++++.++..... +.. +. + .....+ ..+.-. .+
T Consensus 3 ~i~~~~GGTGGHi~Pal--a~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNL--AIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred eEEEEcCCcHHHHHHHH--HHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 47777778777644433 355667777899988875431 111 11 1 000000 001000 00
Q ss_pred cChHHhhccCCcceeEeccCcch---HHHHHhhCCcEEeccccccchhhHHHHH
Q 047833 340 APQVEILSHRSVSVFLSHCGWNS---VLEALSHGVPIIGWPLAAEQFYNSKLLE 390 (473)
Q Consensus 340 vp~~~ll~~~~v~~~I~HGG~gt---~~eal~~GvP~l~~P~~~DQ~~nA~~v~ 390 (473)
+--..++..-+-+++|++||+-| ...|...|+|+++.=.. .-+..+.++-
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n-~~~g~~nr~~ 133 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD-MTPGLANKIA 133 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC-CCccHHHHHH
Confidence 00112344333346999999986 89999999999875432 2333444444
No 266
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.21 E-value=21 Score=33.63 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=38.6
Q ss_pred ceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 352 SVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+.+|+=||-||+.++++. ++|++.+... + +| -+ ...+.+++.++|+++++++
T Consensus 64 d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lG-Fl-----~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 64 DLVIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LG-FL-----TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--cc-cc-----ccCCHHHHHHHHHHHHcCC
Confidence 369999999999999763 6788877531 1 12 11 3567789999999999876
No 267
>PRK06749 replicative DNA helicase; Provisional
Probab=54.05 E-value=80 Score=31.60 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
|++...|+.|-..-.+.+|..... .|+.|.|++.+-..+.+.
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs~~ql~ 230 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSSKQLL 230 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCCHHHHH
Confidence 567778999999999999999999 999999999877665543
No 268
>COG1422 Predicted membrane protein [Function unknown]
Probab=53.43 E-value=45 Score=28.97 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH
Q 047833 412 IAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLN 463 (473)
Q Consensus 412 l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 463 (473)
...-+++++.|-++-+++++.++++++++++| ++.| ....++++.+
T Consensus 60 ~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA-----~~~~-d~~~lkkLq~ 105 (201)
T COG1422 60 YITILQKLLIDQEKMKELQKMMKEFQKEFREA-----QESG-DMKKLKKLQE 105 (201)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----HHhC-CHHHHHHHHH
Confidence 44556778888777889999999999999999 5555 3666666665
No 269
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=53.07 E-value=44 Score=28.88 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecC
Q 047833 19 IIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 19 ~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~ 65 (473)
=.-++.+|+.|.+ .|+++. ++......++. .|+.+..+.
T Consensus 10 K~~l~~lAk~L~~-lGf~I~--AT~GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 10 KTGLVEFAKELVE-LGVEIL--STGGTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred cccHHHHHHHHHH-CCCEEE--EccHHHHHHHH-----cCCeEEEhh
Confidence 3457899999999 999994 46777888888 677777665
No 270
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.92 E-value=29 Score=31.95 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=37.5
Q ss_pred cceeEeccCcchHHHHHh-hCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALS-HGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~-~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||++.+++ .++|++.+- .|-.--. ...+.+++.+++++++++.
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgin-----------------~G~lGfl---~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGFK-----------------AGRLGFL---SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEEe-----------------CCCCccc---cccCHHHHHHHHHHHHcCC
Confidence 346999999999999987 467777663 1211111 3566788899999988876
No 271
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=52.85 E-value=45 Score=29.62 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCcc--CHHHHHHHHHHHHh
Q 047833 5 KETIVLFPFMAQG--HIIPFLALALHLEK 31 (473)
Q Consensus 5 ~~~il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
|++||+..|+-+| ..||...++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 5689988776554 49999999999976
No 272
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=52.52 E-value=1.4e+02 Score=25.13 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=28.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEE
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFV 40 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~ 40 (473)
-|.+++..+.|-.+..+.+|-.... +|+.|.|+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~-~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG-HGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 4668888899999988888888888 99999993
No 273
>PRK05636 replicative DNA helicase; Provisional
Probab=52.39 E-value=75 Score=32.56 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=32.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v 49 (473)
|++...|+.|-..-.+.+|.... + .|..|.|++.+-..+.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHH
Confidence 46777789999999999998765 5 68999999877765444
No 274
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.32 E-value=87 Score=28.39 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=21.9
Q ss_pred ccEEEE-CCCcc-hHHHHHHHhCCceEEEecch
Q 047833 118 PLCIIT-DMFFG-WCKEIAQEYGIFHAIFIGGG 148 (473)
Q Consensus 118 pD~Vv~-d~~~~-~~~~~A~~~giP~v~~~~~~ 148 (473)
||++++ |+..- -+..=|.++|||+|.+.-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 888554 54332 45577889999999986544
No 275
>PRK07773 replicative DNA helicase; Validated
Probab=52.17 E-value=96 Score=34.42 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++..-|+.|-..-.+.+|.......|..|.|++-+...+.+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 5677778999999999999988740589999999877665543
No 276
>PLN02929 NADH kinase
Probab=52.16 E-value=32 Score=32.38 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhh---
Q 047833 293 ATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSH--- 369 (473)
Q Consensus 293 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~--- 369 (473)
.++.+..+.+.|.+.+..+..+...+ + ...... ++++|+-||-||++.+.+.
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~~---------------~--------~~~~~~--~Dlvi~lGGDGT~L~aa~~~~~ 86 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRNE---------------L--------SQPIRD--VDLVVAVGGDGTLLQASHFLDD 86 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeeccc---------------c--------ccccCC--CCEEEEECCcHHHHHHHHHcCC
Confidence 46667778888888887763333111 0 011123 3479999999999998654
Q ss_pred CCcEEeccccc------cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 370 GVPIIGWPLAA------EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 370 GvP~l~~P~~~------DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++|++.+=..- .++.+..... . -+|-- ...+.+++.+++.+++++.
T Consensus 87 ~iPvlGIN~Gp~~~~~~~~~~~~~~~~-r-~lGfL------~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 87 SIPVLGVNSDPTQKDEVEEYSDEFDAR-R-STGHL------CAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred CCcEEEEECCCcccccccccccccccc-c-Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 68888875431 1223332111 1 23322 3456789999999999876
No 277
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=51.25 E-value=1.1e+02 Score=25.73 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=54.9
Q ss_pred chhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecc-cChH
Q 047833 265 STELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKW-APQV 343 (473)
Q Consensus 265 ~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~-vp~~ 343 (473)
...++-++|.+.. ...++.|... ......++..+.+-++|-+++... . ... .........++ .+-.
T Consensus 19 ~A~~lg~~La~~g---~~lv~Gg~~G-----lM~a~a~ga~~~gg~viGVlp~~l-~-~~~---~~~~~~i~~~~~~~Rk 85 (159)
T TIGR00725 19 IAYRLGKELAKKG---HILINGGRTG-----VMEAVSKGAREAGGLVVGILPDED-F-AGN---PYLTIKVKTGMNFARN 85 (159)
T ss_pred HHHHHHHHHHHCC---CEEEcCCchh-----HHHHHHHHHHHCCCeEEEECChhh-c-cCC---CCceEEEECCCcchHH
Confidence 3456667776552 4555544332 344455566666777776665331 0 100 00112233343 3344
Q ss_pred HhhccCCcceeEeccCcchHH---HHHhhCCcEEeccc
Q 047833 344 EILSHRSVSVFLSHCGWNSVL---EALSHGVPIIGWPL 378 (473)
Q Consensus 344 ~ll~~~~v~~~I~HGG~gt~~---eal~~GvP~l~~P~ 378 (473)
.++...+-..++--||.||.. |++.+++|+++++.
T Consensus 86 ~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 86 FILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 444433333567778899765 56889999999885
No 278
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=50.69 E-value=24 Score=30.61 Aligned_cols=40 Identities=8% Similarity=-0.110 Sum_probs=33.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLR 47 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
||++.-.|+.|=+.-.+.+.+.|++ .|++|.++.++.-..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~-~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVD-EGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHh-CcCEEEEEEchhHHH
Confidence 6887777888877777899999999 999999998777543
No 279
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.39 E-value=26 Score=32.66 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=37.4
Q ss_pred cceeEeccCcchHHHHHh---hCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALS---HGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~---~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
.+++|.-||-||+.++++ .++|++.++... +|.- ..++.+++.+++.+++++.
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------lGFl--------~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------LGFL--------TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------CCcc--------ccCCHHHHHHHHHHHHcCC
Confidence 347999999999999985 356888886321 1111 2455678888899888876
No 280
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=50.24 E-value=91 Score=29.92 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=59.5
Q ss_pred cEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQG-----HIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 6 ~~il~~~~~~~G-----H~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
..|+|.|+.+.| ...-+..|++.|.+ +|.+|.+.+++...+..++... ..+.. ..+..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~-~~~~Vvl~g~~~e~e~~~~i~~--------~~~~~---~~l~~----- 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIA-KGYQVVLFGGPDEEERAEEIAK--------GLPNA---VILAG----- 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHH-CCCEEEEecChHHHHHHHHHHH--------hcCCc---cccCC-----
Confidence 467777763332 34458899999999 9999999988855555443211 00100 00000
Q ss_pred CCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecc
Q 047833 81 DSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
. ....++..++. ..|++|+... +..++|..+|.|+|.+...
T Consensus 239 -k--------------~sL~e~~~li~---------~a~l~I~~DS--g~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 239 -K--------------TSLEELAALIA---------GADLVIGNDS--GPMHLAAALGTPTIALYGP 279 (334)
T ss_pred -C--------------CCHHHHHHHHh---------cCCEEEccCC--hHHHHHHHcCCCEEEEECC
Confidence 0 01122233332 4599888854 4589999999999998653
No 281
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.09 E-value=46 Score=32.89 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLR 47 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
++..|+++..-+.|-.+-.-.||+.|++ +|+.|.+++..-++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~Rp 141 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRP 141 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCCh
Confidence 3456778888899999999999999999 999999999877654
No 282
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=50.09 E-value=1.3e+02 Score=30.57 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEE
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIF 144 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~ 144 (473)
.+.+++++. +||++|.+. ....+|+++|||++-.
T Consensus 384 e~~~~i~~~-------~pDliig~s---~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 384 ELYKMLKEA-------KADIMLSGG---RSQFIALKAGMPWLDI 417 (475)
T ss_pred HHHHHHhhc-------CCCEEEecC---chhhhhhhcCCCEEEc
Confidence 345666777 899999984 3668999999999853
No 283
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.03 E-value=26 Score=36.46 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=39.8
Q ss_pred cceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+-||-||++.+.+. ++|++.+-.. +||. . ...+.+++.++++++++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G------------~lGF-----L---~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMG------------TVGF-----L---TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC------------CCCc-----C---cccCHHHHHHHHHHHHcCC
Confidence 4579999999999999774 7788887421 1122 2 4567789999999999876
No 284
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=50.01 E-value=73 Score=31.17 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
+++..-++.|--.-++.+|..+.. .|..|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcCHHHH
Confidence 456666788999999999999999 99999999877655443
No 285
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=49.66 E-value=28 Score=35.12 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=38.9
Q ss_pred cceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhc-ceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIG-VCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG-~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||++.|++. ++|++.+- . | +|- + ..++.+++.++|.++++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~-G~LGF-L-----t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFS--------------M-GSLGF-M-----TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEe--------------C-CCcce-e-----cccCHHHHHHHHHHHHcCC
Confidence 4579999999999999874 56777662 1 2 332 2 3567889999999999886
No 286
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.65 E-value=34 Score=32.30 Aligned_cols=36 Identities=19% Similarity=-0.010 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNL 46 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~ 46 (473)
|+||+|+..+.. ....-++|.+ .||+|.-+.+.+.+
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~-~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIE-AGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHh-CCCceEEEEeCCCC
Confidence 468999888743 4566778888 89999988877753
No 287
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=49.38 E-value=1.1e+02 Score=30.56 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..-.+.+|..+....|+.|.|++.+...+.+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 4567778999999999999887640599999999888765553
No 288
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=49.25 E-value=1.2e+02 Score=27.83 Aligned_cols=104 Identities=16% Similarity=0.041 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCCC-cEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhhH
Q 047833 22 FLALALHLEKTNK-YTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKP 100 (473)
Q Consensus 22 ~l~La~~L~~~rG-h~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (473)
+-..++.|.+ .+ .+|.+.+.....+.+.........+-+..+|.+....+++...- ....+ ....+
T Consensus 118 ~~eA~~~l~~-~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~i-ia~~G-----------Pfs~e 184 (249)
T PF02571_consen 118 YEEAAELLKE-LGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNI-IAMQG-----------PFSKE 184 (249)
T ss_pred HHHHHHHHhh-cCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhE-EEEeC-----------CCCHH
Confidence 4456777777 66 88888887777776644111115666677775522112211100 00000 01122
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcchH----HHHHHHhCCceEEEe
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFGWC----KEIAQEYGIFHAIFI 145 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~----~~~A~~~giP~v~~~ 145 (473)
.=.++++++ +.|+||+=...-.+ ..+|+.+|||++.+.
T Consensus 185 ~n~al~~~~-------~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 185 LNRALFRQY-------GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHc-------CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 335678888 89999997443222 379999999999973
No 289
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=48.68 E-value=54 Score=27.76 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.1
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34578888866 7789999999999996
No 290
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=48.63 E-value=35 Score=28.82 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=21.3
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEeccc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWPL 378 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P~ 378 (473)
..++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33467776655 67799999999999963
No 291
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=48.45 E-value=37 Score=29.52 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=29.3
Q ss_pred hHHHHHHHHhHhhhcCCCCcc--EEEECCCcc-hHHHHHHHhCCceEEEecch
Q 047833 99 KPHFKKLVNDLIDEQNGYKPL--CIITDMFFG-WCKEIAQEYGIFHAIFIGGG 148 (473)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~pD--~Vv~d~~~~-~~~~~A~~~giP~v~~~~~~ 148 (473)
...+.+++++. .++ ++|..++.- ++..+|+.+|+|.|.++|+-
T Consensus 46 ~~~l~~~i~~~-------~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 46 IAQLEQLIEEL-------KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHhC-------CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34556677776 443 666665433 55678999999999998753
No 292
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=48.26 E-value=1.5e+02 Score=32.98 Aligned_cols=36 Identities=11% Similarity=-0.042 Sum_probs=28.7
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
.+.+++++. +||++|.... ...+|+++|||++....
T Consensus 380 el~~~i~~~-------~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 380 GLLRVMREK-------MPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred HHHHHHHhc-------CCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 445677777 9999999754 46789999999997653
No 293
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=48.21 E-value=75 Score=28.69 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=51.4
Q ss_pred CcEEEEEcCCCc-c-CH--HHHHHHHHHHHhCCCcEEEEEcCCcc--hhhhhccCCCCCCce--EEecCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQ-G-HI--IPFLALALHLEKTNKYTITFVNTPLN--LRKLKSSVPQNSSIN--LLEIPFDSIDHNLPPC 76 (473)
Q Consensus 5 ~~~il~~~~~~~-G-H~--~p~l~La~~L~~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 76 (473)
+..|+|.++.+. . .+ .-+..|++.|.+ +|..|.+++++.. .+.+.... .+.+ +..+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~-~~~~vvl~g~~~~~~~~~~~~~~---~~~~~~~~~~~----------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKE-RGYRVVLLGGPEEQEKEIADQIA---AGLQNPVINLA----------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCC-CT-EEEE--SSHHHHHHHHHHHH---TTHTTTTEEET-----------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHh-hCceEEEEccchHHHHHHHHHHH---HhcccceEeec-----------
Confidence 345667766544 2 12 226899999999 9999999887777 22222211 1111 11111
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecc
Q 047833 77 TENTDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
... ...++..+++. .|++|+... +...+|..+|+|++.++..
T Consensus 170 ----~~~--------------~l~e~~ali~~---------a~~~I~~Dt--g~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 170 ----GKT--------------SLRELAALISR---------ADLVIGNDT--GPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp ----TTS---------------HHHHHHHHHT---------SSEEEEESS--HHHHHHHHTT--EEEEESS
T ss_pred ----CCC--------------CHHHHHHHHhc---------CCEEEecCC--hHHHHHHHHhCCEEEEecC
Confidence 000 11222333443 499998854 4689999999999998643
No 294
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.13 E-value=37 Score=31.50 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=38.4
Q ss_pred HHhhccCCcceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHH
Q 047833 343 VEILSHRSVSVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIEL 418 (473)
Q Consensus 343 ~~ll~~~~v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ 418 (473)
..+...++ ++|+=||-||++.+++. ++|++.+-.. .+|-- ...+.+++.+.+.+
T Consensus 37 ~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL------~~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFL------TDIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccc------ccCCHHHHHHHHHH
Confidence 44444444 69999999999988663 6788877321 12211 34567788888888
Q ss_pred HHc
Q 047833 419 VMN 421 (473)
Q Consensus 419 ll~ 421 (473)
+++
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 888
No 295
>PRK10867 signal recognition particle protein; Provisional
Probab=48.12 E-value=1.4e+02 Score=29.89 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=34.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTN-KYTITFVNTPLNLRK 48 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~r-Gh~Vt~~~~~~~~~~ 48 (473)
-|+++..++.|-..-...||..|+. + |+.|.+++...++..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~-~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKK-KKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-hcCCcEEEEEccccchH
Confidence 4456666789999999999999999 8 999999998876543
No 296
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=48.05 E-value=70 Score=28.60 Aligned_cols=29 Identities=10% Similarity=-0.137 Sum_probs=23.0
Q ss_pred CccEEEECCCcchHH---HHHHHhCCceEEEe
Q 047833 117 KPLCIITDMFFGWCK---EIAQEYGIFHAIFI 145 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~---~~A~~~giP~v~~~ 145 (473)
+.|+|+-|-+.+.-. .+++.+|+|++.-.
T Consensus 178 gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 178 GADLIVLDCMGYTQEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCEEeHH
Confidence 789999997666332 68899999999843
No 297
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=48.04 E-value=29 Score=31.45 Aligned_cols=95 Identities=9% Similarity=0.096 Sum_probs=53.4
Q ss_pred CCeEEEEeeCCccc---CCHHHHHHHHHHHHhCCCceEEEECCCCCCCcc--c-cccccC-CcEEEecccC---hHHhhc
Q 047833 278 YTSVLYVSFGSQNT---IATSQMMQLAMALEASGKNFIWVVRPPIGFDIN--S-EIKCSG-QGLVVHKWAP---QVEILS 347 (473)
Q Consensus 278 ~~~~V~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~--~-~~~~~~-~nv~~~~~vp---~~~ll~ 347 (473)
+++.|.+..|+... ++.+.+.++++.+.+.++++++..+.. +.+.+ . .....+ ..+.+.+-.. ...++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-EQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-HHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-HHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 45677777777653 578889999999988887776666543 10000 0 011111 1344444333 357777
Q ss_pred cCCcceeEeccCcchHHHHHhhCCcEEec
Q 047833 348 HRSVSVFLSHCGWNSVLEALSHGVPIIGW 376 (473)
Q Consensus 348 ~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 376 (473)
+++ ++|+. ..|.++=|...|+|+|++
T Consensus 183 ~a~--~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 183 RAD--LVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TSS--EEEEE-SSHHHHHHHHTT--EEEE
T ss_pred cCC--EEEec-CChHHHHHHHHhCCEEEE
Confidence 877 46665 678899999999999998
No 298
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=47.44 E-value=1.7e+02 Score=24.63 Aligned_cols=120 Identities=12% Similarity=0.033 Sum_probs=62.3
Q ss_pred EEcCCCccCHHHHH-HHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhH
Q 047833 10 LFPFMAQGHIIPFL-ALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLV 88 (473)
Q Consensus 10 ~~~~~~~GH~~p~l-~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 88 (473)
.+.+...+.+..++ .+|..|++ +|++|.=+........ .... ..+....++.. ..++-. +..... +...
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~-~G~rv~G~vQ~~~~~~--~~~~--~~m~l~dl~~G---~~~~Is-Q~LG~g-s~gC 72 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRA-RGVRVAGLVQRNTADG--DGGR--CDMDLRDLPSG---RRIRIS-QDLGPG-SRGC 72 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccCCC--CCCc--cceEEEECCCC---CEEEEe-eccCCC-Cccc
Confidence 34455567777766 68999999 9999987764431111 0000 45555555522 111100 000000 0011
Q ss_pred HHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch---------HHHHHHHhCCceEEEecc
Q 047833 89 SKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW---------CKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~---------~~~~A~~~giP~v~~~~~ 147 (473)
+.-...+......+...+++ ++|++|.+-|.-. ....|-..|||+++..+.
T Consensus 73 rLD~~~La~A~~~l~~al~~--------~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 73 RLDPGALAEASAALRRALAE--------GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred ccCHHHHHHHHHHHHHHHhc--------CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 11223334444444555555 6999999965431 123455679999997553
No 299
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=47.41 E-value=34 Score=21.79 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 047833 408 LKKDIAAKIELVMNETEKGIELRKNAYEVR 437 (473)
Q Consensus 408 ~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~ 437 (473)
+++.|..||..+.++. . ++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~-~--S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK-M--SIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS-S---HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC-C--CHHHHHHHHC
Confidence 4788999999999873 2 7887777653
No 300
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=46.86 E-value=1.7e+02 Score=29.00 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEE
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIF 144 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~ 144 (473)
.+.+.+++. +||+++.+.. ...+|+++|||++..
T Consensus 347 e~~~~i~~~-------~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK-------KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc-------CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 445667777 8999999954 458899999999864
No 301
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.68 E-value=40 Score=32.70 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
+.-|+|+..-+.|-..-+-.+|..+++ +|+.+-+++..-|+.-
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAG 143 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHh-cCCceeEEeecccccc
Confidence 344568888899999999999999999 9999999998887643
No 302
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=46.66 E-value=1.1e+02 Score=27.99 Aligned_cols=101 Identities=16% Similarity=0.062 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCC-----CCCCCCCCCCCCChhhHHHHHHHHHh
Q 047833 23 LALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDH-----NLPPCTENTDSVPYHLVSKLIEATLS 97 (473)
Q Consensus 23 l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (473)
-.+++.+.+ .|-+|.+.+...+...+...... ..+-+..+|.+.... +++...-....- ..
T Consensus 118 ~ea~~~~~~-~~~rVflt~G~~~l~~f~~~~~~-~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~G------------Pf 183 (257)
T COG2099 118 EEAAEAAKQ-LGRRVFLTTGRQNLAHFVAADAH-SHVLARVLPPPDVLAKCEDLGVPPARIIAMRG------------PF 183 (257)
T ss_pred HHHHHHHhc-cCCcEEEecCccchHHHhcCccc-ceEEEEEcCchHHHHHHHhcCCChhhEEEecC------------Cc
Confidence 456677777 78788888887777776664432 345555555321111 111110000000 11
Q ss_pred hhHHHHHHHHhHhhhcCCCCccEEEECCCcch-----HHHHHHHhCCceEEE
Q 047833 98 FKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW-----CKEIAQEYGIFHAIF 144 (473)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~-----~~~~A~~~giP~v~~ 144 (473)
..+.=..+++++ +.|+||+=...-. =..+|+.+|||+|.+
T Consensus 184 s~~~n~all~q~-------~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 184 SEEDNKALLEQY-------RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred ChHHHHHHHHHh-------CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 222235678888 8999999754332 247999999999997
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=46.34 E-value=85 Score=31.59 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=35.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
-+++..-++.|--.-++.++..+.+ +|+.|.|++.+...+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccccHHHH
Confidence 3456777899999999999999999 99999999988766554
No 304
>PRK08840 replicative DNA helicase; Provisional
Probab=45.85 E-value=2.2e+02 Score=28.84 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v 49 (473)
+++...|+.|-..-.+.+|.... + .|+.|.|++.+-..+.+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQL 261 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHHH
Confidence 45777789999999999999886 5 69999999988766544
No 305
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=45.83 E-value=44 Score=28.63 Aligned_cols=42 Identities=12% Similarity=-0.100 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|--.-.+.++.+..+ .|..|.|++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHHH
Confidence 466777888999999999999989 999999999887665543
No 306
>PRK05748 replicative DNA helicase; Provisional
Probab=45.72 E-value=2.2e+02 Score=28.65 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..-.+.+|.... + .|+.|.|++.+-..+.+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLV 248 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHH
Confidence 56777889999999999998876 5 699999999887765543
No 307
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=45.65 E-value=1.2e+02 Score=30.82 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNT 42 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~ 42 (473)
+|||++..|++.| +|+++|+++ +|++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 4899999998887 578889883 3999888844
No 308
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=45.50 E-value=77 Score=28.26 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
-+++...++.|--.-.+.++..-.+ +|+.|.+++.+...+.+.+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHH
Confidence 4556666788888888888888888 8999999998887665544
No 309
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=45.47 E-value=1.2e+02 Score=29.85 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEEcCCc-chhhhhccCCCCCCceEEecC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNK-YTITFVNTPL-NLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rG-h~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 65 (473)
|++|+++..|..|+ .+|.-|.+ +| ++|+++.-.. ..+.+..... ..+++..+.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~-~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQ-NGDGEVTIADRSKEKCARIAELIG--GKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHh-CCCceEEEEeCCHHHHHHHHhhcc--ccceeEEec
Confidence 45888888776665 57889999 99 9999998553 3344433222 344555444
No 310
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=45.41 E-value=43 Score=32.90 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=31.7
Q ss_pred HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchH----------HHHHHHhCCceEEEe
Q 047833 96 LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWC----------KEIAQEYGIFHAIFI 145 (473)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~----------~~~A~~~giP~v~~~ 145 (473)
+.....+.+.+++. +||++|+.+-+..+ ..+.+.++||.++-.
T Consensus 62 eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKAKVLEMIKGA-------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45556777788888 99999999765531 135677999999964
No 311
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=45.36 E-value=43 Score=32.88 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=31.7
Q ss_pred HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchH----------HHHHHHhCCceEEEe
Q 047833 96 LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWC----------KEIAQEYGIFHAIFI 145 (473)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~----------~~~A~~~giP~v~~~ 145 (473)
+.....+.+.+++. +||++|+.+-+..+ ..+.+.++||.++-.
T Consensus 62 eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 62 EEAVARVLEMLKDK-------EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45556777788888 99999999765531 135677999999964
No 312
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=45.28 E-value=2.1e+02 Score=24.88 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=36.8
Q ss_pred CcEEEEEcC---CC-ccCHHHH-HHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCC
Q 047833 5 KETIVLFPF---MA-QGHIIPF-LALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFD 67 (473)
Q Consensus 5 ~~~il~~~~---~~-~GH~~p~-l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 67 (473)
|.||+++.. |+ .|=+--+ -.|+..|.+ +||+|++.+.......- .... .++++..+|.+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~~~-~~~y--~gv~l~~i~~~ 64 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYPYK-EFEY--NGVRLVYIPAP 64 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCCCC-Cccc--CCeEEEEeCCC
Confidence 347776654 22 4555443 367888888 99999999876543221 1111 67788877743
No 313
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=45.21 E-value=26 Score=30.33 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
||++.-.|+-|-+.- ..+.+.|++ +|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~-~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKE-AGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHH-CCCEEEEEECccHHHHHH
Confidence 355555566565544 889999999 999999999988777664
No 314
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=44.13 E-value=33 Score=31.56 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=39.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
.-+++...|+.|...-.++.+...++ +|..|.+++.....+.+.+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLE 68 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHH
Confidence 45678888999999999999999999 9999999998887766554
No 315
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=44.03 E-value=57 Score=31.93 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=47.2
Q ss_pred ceeEeccCcchHHHHHhh-----------------CCcEEeccccccchhhHHHHHHhhcceEEEec-CCCCccCHHHHH
Q 047833 352 SVFLSHCGWNSVLEALSH-----------------GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVAR-GKSSEVLKKDIA 413 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~-----------------GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~-~~~~~~~~~~l~ 413 (473)
..++|.||..+...|+.+ +.|.++++-.. ++-+.+.+. .||+|++.-+ ++..+++.+.|.
T Consensus 105 ~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~-~lGlg~~~I~~~~~~~md~~~L~ 182 (373)
T PF00282_consen 105 GGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAAR-ILGLGVRKIPTDEDGRMDIEALE 182 (373)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHH-HTTSEEEEE-BBTTSSB-HHHHH
T ss_pred ceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcc-eeeeEEEEecCCcchhhhHHHhh
Confidence 378999998888777533 25677776544 455555555 6699976665 345788999999
Q ss_pred HHHHHHHcC
Q 047833 414 AKIELVMNE 422 (473)
Q Consensus 414 ~~i~~ll~~ 422 (473)
++|++...+
T Consensus 183 ~~l~~~~~~ 191 (373)
T PF00282_consen 183 KALEKDIAN 191 (373)
T ss_dssp HHHHHHHHT
T ss_pred hhhcccccc
Confidence 999887655
No 316
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=43.85 E-value=1.2e+02 Score=30.14 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=25.5
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCcEEEEE
Q 047833 8 IVLF-PFMAQGHIIPFLALALHLEKTNKYTITFV 40 (473)
Q Consensus 8 il~~-~~~~~GH~~p~l~La~~L~~~rGh~Vt~~ 40 (473)
|++. +..+.|-..-.+.|.++|++ ||++|.=+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~-rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHh-cCCccccc
Confidence 4433 44577999999999999999 99998643
No 317
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=43.69 E-value=20 Score=36.09 Aligned_cols=102 Identities=11% Similarity=0.185 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhCCC--ceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccC--cc-hHHHHHh
Q 047833 294 TSQMMQLAMALEASGK--NFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCG--WN-SVLEALS 368 (473)
Q Consensus 294 ~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG--~g-t~~eal~ 368 (473)
.+.+.++..-+++.+. +++|-+.+.. +-.. ..+++.+.+ ++++-.+ +| ++.||++
T Consensus 328 ~~~~~el~~lie~~~l~g~~v~~~~s~~------------------~~~~-yrl~adt~~-v~~qPa~E~FGiv~IEAMa 387 (495)
T KOG0853|consen 328 VEYLKELLSLIEEYDLLGQFVWFLPSTT------------------RVAK-YRLAADTKG-VLYQPANEHFGIVPIEAMA 387 (495)
T ss_pred HHHHHHHHHHHHHhCccCceEEEecCCc------------------hHHH-HHHHHhcce-EEecCCCCCccceeHHHHh
Confidence 4566777777777543 6777764320 0000 222333333 4454444 12 7889999
Q ss_pred hCCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 369 HGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 369 ~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+|.|++.+=- -.-+..++ ..--|.-.++ ..-....+++++.++..|+
T Consensus 388 ~glPvvAt~~----GGP~EiV~-~~~tG~l~dp---~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 388 CGLPVVATNN----GGPAEIVV-HGVTGLLIDP---GQEAVAELADALLKLRRDP 434 (495)
T ss_pred cCCCEEEecC----CCceEEEE-cCCcceeeCC---chHHHHHHHHHHHHHhcCH
Confidence 9999999732 22222233 2123444443 2333347999999999999
No 318
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=43.67 E-value=81 Score=28.11 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCcc--CHHHHHHHHHHHHh
Q 047833 5 KETIVLFPFMAQG--HIIPFLALALHLEK 31 (473)
Q Consensus 5 ~~~il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
|++|++..|+.+| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 4579988886554 48999999999955
No 319
>PRK13059 putative lipid kinase; Reviewed
Probab=43.49 E-value=97 Score=29.11 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.3
Q ss_pred ceeEeccCcchHHHHH------hhCCcEEeccc
Q 047833 352 SVFLSHCGWNSVLEAL------SHGVPIIGWPL 378 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal------~~GvP~l~~P~ 378 (473)
+.+|.-||-||+.|++ ..++|+-++|.
T Consensus 58 d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 58 KYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 4699999999999885 23589999996
No 320
>PRK07004 replicative DNA helicase; Provisional
Probab=43.03 E-value=1.7e+02 Score=29.69 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..-.+.+|..+. + .|+.|.|++.+-..+.+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHH
Confidence 46777789999999999998775 5 699999999887765543
No 321
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=42.76 E-value=2.5e+02 Score=26.28 Aligned_cols=104 Identities=8% Similarity=0.100 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcc--hhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNTPLN--LRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
+++||+++.+|..+.+.-++ ++..+- -+++|.++.+... ....++ .++.+..++.. ..
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~------~~----- 148 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVER-----FGIPFHHVPVT------KE----- 148 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHHH-----hCCCEEEeccC------cc-----
Confidence 56799988888855554443 333331 3678877754442 223333 67777666521 00
Q ss_pred CCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEec
Q 047833 81 DSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~ 146 (473)
. . ......+.++++++ +||+||.-.+.. -...+-+.+.-.++.+++
T Consensus 149 ~-~------------~~~~~~~~~~l~~~-------~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 149 T-K------------AEAEARLLELIDEY-------QPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred c-c------------chhHHHHHHHHHHh-------CCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 0 0 11233456778888 899999886544 222333333334455443
No 322
>PRK08462 biotin carboxylase; Validated
Probab=42.59 E-value=2.3e+02 Score=28.43 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 3 QRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
..+.|||++..+. + .+++.+++++ .|++|+.+.....
T Consensus 2 ~~~k~ili~~~g~---~--~~~~~~~~~~-~G~~~v~~~~~~d 38 (445)
T PRK08462 2 KEIKRILIANRGE---I--ALRAIRTIQE-MGKEAIAIYSTAD 38 (445)
T ss_pred CCCCEEEEECCcH---H--HHHHHHHHHH-cCCCEEEEechhh
Confidence 3467888887653 2 6799999999 9999888865543
No 323
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=42.53 E-value=2.2e+02 Score=27.03 Aligned_cols=32 Identities=16% Similarity=-0.033 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~ 43 (473)
+||+|+..+. -.+...++|.+ +||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~-~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLE-SGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHH-CCCcEEEEECC
Confidence 4788876542 45677889999 89998866643
No 324
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=42.49 E-value=1.6e+02 Score=27.59 Aligned_cols=104 Identities=8% Similarity=0.009 Sum_probs=56.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcC-Cc-chhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCC
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKT-NKYTITFVNT-PL-NLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENT 80 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~-rGh~Vt~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (473)
+++||+++.+++...+. +|.++.+.- .+++|.++.. .+ .....++ .++.+..++.. +.
T Consensus 88 ~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~------~~----- 148 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAW-----HGIPFHHFPIT------PD----- 148 (286)
T ss_pred cCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHH-----hCCCEEEeCCC------cC-----
Confidence 46799988888644433 344444441 4688888744 33 3333334 56777665521 00
Q ss_pred CCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEec
Q 047833 81 DSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~ 146 (473)
.. ......+.++++++ ++|++|.-.+.. -...+-+...-..+.+++
T Consensus 149 -~~------------~~~~~~~~~~l~~~-------~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK13011 149 -TK------------PQQEAQVLDVVEES-------GAELVVLARYMQVLSPELCRKLAGRAINIHH 195 (286)
T ss_pred -ch------------hhhHHHHHHHHHHh-------CcCEEEEeChhhhCCHHHHhhccCCeEEecc
Confidence 00 11223456778888 899998886544 223444444444566544
No 325
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=42.27 E-value=54 Score=27.75 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=21.6
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..++++|+|-| .+.||...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 33577888765 6779999999999985
No 326
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=42.21 E-value=1.5e+02 Score=29.80 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNT 42 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~ 42 (473)
++|||++..|++.| +|++.|++ .|++|.++-.
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~-~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKR-SGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHh-CCCeEEEEEC
Confidence 45899999888777 58899999 8987777743
No 327
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=41.92 E-value=39 Score=34.76 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.2
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 117 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
+||+||.++. ...+|+++|||++.++
T Consensus 362 ~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 8999998863 5679999999998874
No 328
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=41.24 E-value=33 Score=29.56 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
...++|+..++.|-..=..++|.++.+ +|+.|.|++.....+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceeccccc
Confidence 457888888899988889999999999 9999999998877766655
No 329
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=41.02 E-value=2e+02 Score=25.48 Aligned_cols=40 Identities=5% Similarity=-0.047 Sum_probs=24.3
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEecc
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~~ 147 (473)
.+.+.++++ +||++|+-.+.. ....+-+...-.++.++++
T Consensus 69 ~~~~~l~~~-------~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 109 (207)
T PLN02331 69 ELVDALRGA-------GVDFVLLAGYLKLIPVELVRAYPRSILNIHPA 109 (207)
T ss_pred HHHHHHHhc-------CCCEEEEeCcchhCCHHHHhhCCCCEEEEeCc
Confidence 445667888 899999976543 2233344444456666554
No 330
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=41.02 E-value=35 Score=29.35 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=32.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
||++.-.|+.| ..-...+.+.|++ +|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~-~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTK-LGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHH-CCCEEEEEEChHHHhhcc
Confidence 57666666544 4466799999999 999999999888666554
No 331
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.00 E-value=2.3e+02 Score=24.14 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=49.0
Q ss_pred EEEEcCccccchhHHHHHHhhcCCCeEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHH
Q 047833 217 GILVNTVEELDKIGLMYFKRKFGRSVWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQ 296 (473)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~ 296 (473)
..++-+.++.-......+...+ |.+..+|-..... .....+.+.+.+....+ .+|+|++|+-- +
T Consensus 51 ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f---------~~~~~~~i~~~I~~~~p-div~vglG~Pk-----Q 114 (172)
T PF03808_consen 51 IFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYF---------DEEEEEAIINRINASGP-DIVFVGLGAPK-----Q 114 (172)
T ss_pred EEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCC---------ChhhHHHHHHHHHHcCC-CEEEEECCCCH-----H
Confidence 3444444443334555677777 6777777555432 12356677777777643 49999998532 2
Q ss_pred HHHHHHHHHhCCCceEEEECCC
Q 047833 297 MMQLAMALEASGKNFIWVVRPP 318 (473)
Q Consensus 297 ~~~~~~al~~~~~~~i~~~~~~ 318 (473)
-.-+.+-....+..+++.+|..
T Consensus 115 E~~~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 115 ERWIARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHHHHHHHHCCCCEEEEECch
Confidence 1222233344666777777644
No 332
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=40.94 E-value=55 Score=25.78 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=33.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
++..+.++-.|-.....++..|++ .|++|.++......+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~-~G~~v~~l~~~~~~~~ 41 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRD-NGFEVIDLGVDVPPEE 41 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHH-CCCEEEEcCCCCCHHH
Confidence 567777888999999999999999 9999999976554333
No 333
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=40.79 E-value=34 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccC
Q 047833 20 IPFLALALHLEKTNKYTITFVNTPLNLRKLKSSV 53 (473)
Q Consensus 20 ~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~ 53 (473)
.-.+-++..|++ +||+|++++++.....++-+.
T Consensus 14 p~alYl~~~Lk~-~G~~v~Va~npAA~kLl~vaD 46 (139)
T PF09001_consen 14 PSALYLSYKLKK-KGFEVVVAGNPAALKLLEVAD 46 (139)
T ss_dssp HHHHHHHHHHHC-TTEEEEEEE-HHHHHHHHHHS
T ss_pred HHHHHHHHHHHh-cCCeEEEecCHHHHhHhhhcC
Confidence 346778999999 999999999999888777643
No 334
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=40.37 E-value=75 Score=26.32 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=21.8
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEeccc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWPL 378 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P~ 378 (473)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 33578887755 67899999999999863
No 335
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=40.34 E-value=38 Score=32.12 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=32.5
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 047833 7 TIVLF-PFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLR 47 (473)
Q Consensus 7 ~il~~-~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
|++|+ .-|+.|-..-..++|..+++ +|++|.++++.+...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCcc
Confidence 45544 44888999999999999999 999999999888654
No 336
>PRK11519 tyrosine kinase; Provisional
Probab=40.31 E-value=4.4e+02 Score=28.51 Aligned_cols=40 Identities=8% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPF--MAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~--~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+.|++++++ |+-|--.-...||..|.. .|++|.++-...
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~-~g~rvLlID~Dl 565 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDM 565 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence 3456665554 677888889999999999 999999996543
No 337
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=40.18 E-value=1e+02 Score=31.09 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
-+++..-|+.|--.-++.++..+.+ +|+.|.|++.+...+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCCHHHHH
Confidence 3456666889999999999999999 999999999877655443
No 338
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=39.93 E-value=2.4e+02 Score=24.15 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEE
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFV 40 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~ 40 (473)
+--|.+++..+.|-.+-.+.+|-.... +|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~-~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALG-HGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEE
Confidence 345778888999999999999999889 99999665
No 339
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=39.60 E-value=69 Score=28.85 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=35.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 6 ETIVLFPF-MAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 6 ~~il~~~~-~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
+-|.|++. |+-|-..-.+.||.+|.+ +|-.|+++=..+++..
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPL 44 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcH
Confidence 34556665 788999999999999999 9999999987776544
No 340
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=39.50 E-value=3e+02 Score=25.20 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=32.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
-+++...|+.|-..-.+.++....+ +|..|.|++.+..
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCC
Confidence 3566777899999999999999989 9999999998753
No 341
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=39.48 E-value=2.4e+02 Score=30.07 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=25.9
Q ss_pred HHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEecchH
Q 047833 102 FKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIGGGG 149 (473)
Q Consensus 102 ~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~~~~ 149 (473)
..+.+++. +||++|+-.+.. ....+-......++.++++..
T Consensus 67 ~~~~l~~~-------~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slL 108 (660)
T PRK08125 67 WVERIREL-------APDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLL 108 (660)
T ss_pred HHHHHHhc-------CCCEEEEccccccCCHHHHhhcCCCEEEEeCCcc
Confidence 34567777 899998875433 223444555566788877644
No 342
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=39.48 E-value=48 Score=34.32 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=47.2
Q ss_pred ChHHhhccCCcceeEecc-Ccc-hHHHHHhhCCcEEeccccc-----cchhhHHHHHHhhcceEEEecCCCCccCHHHHH
Q 047833 341 PQVEILSHRSVSVFLSHC-GWN-SVLEALSHGVPIIGWPLAA-----EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIA 413 (473)
Q Consensus 341 p~~~ll~~~~v~~~I~HG-G~g-t~~eal~~GvP~l~~P~~~-----DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~ 413 (473)
++.+++.-|+++.|-+-= =|| |=+||+..|||.|..=+.+ .+... .. ... |+-+.-.. ..+.++..
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~-~~~-GV~VvdR~----~~n~~e~v 534 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DP-EEY-GVYVVDRR----DKNYDESV 534 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HH-GGG-TEEEE-SS----SS-HHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cC-cCC-cEEEEeCC----CCCHHHHH
Confidence 456666665553333310 133 8899999999999977632 22222 22 224 77665554 44555555
Q ss_pred HHHHHHH----cCC-hhhHHHHHHHHHHHHHH
Q 047833 414 AKIELVM----NET-EKGIELRKNAYEVREII 440 (473)
Q Consensus 414 ~~i~~ll----~~~-~~~~~~~~~a~~l~~~~ 440 (473)
+.+.+.| .-. .+....|.+|+++++.+
T Consensus 535 ~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 535 NQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 5555444 322 14456777887777655
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=39.46 E-value=38 Score=29.92 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=31.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNT 42 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~ 42 (473)
+=|++...|+.|-....-.||++|.+ ++|+|..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH-hhhhccccch
Confidence 34677888999999999999999999 9999988763
No 344
>PRK06904 replicative DNA helicase; Validated
Probab=39.37 E-value=3e+02 Score=27.97 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..-.+.+|...+...|+.|.|++.+-..+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 4577778999999999999877640599999999887765543
No 345
>PRK00784 cobyric acid synthase; Provisional
Probab=39.36 E-value=3.1e+02 Score=28.03 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=29.2
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 047833 6 ETIVLFPFM-AQGHIIPFLALALHLEKTNKYTITFVNT 42 (473)
Q Consensus 6 ~~il~~~~~-~~GH~~p~l~La~~L~~~rGh~Vt~~~~ 42 (473)
..|++.... .-|-..-...|++.|++ +|++|..+=+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~-~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILAR-RGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEecccc
Confidence 357766554 47999999999999999 9999997744
No 346
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=39.32 E-value=42 Score=30.35 Aligned_cols=43 Identities=7% Similarity=-0.018 Sum_probs=32.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCCcchhhhhc
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTN--KYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~r--Gh~Vt~~~~~~~~~~v~~ 51 (473)
|++.-.|+.+=+.=.+.|.+.|++ . ||+|.++.++...+.+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~-~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKR-EIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHh-hcCCCeEEEEEChhHHhHHhh
Confidence 454444444444789999999999 9 999999998887666655
No 347
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.14 E-value=43 Score=28.73 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 8 IVLFPFMAQGHIIP-FLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 8 il~~~~~~~GH~~p-~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++.-.|+ ||... .+.+.+.|++++||+|.++.++.-.+.+.-
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 44444444 77766 889999998426999999998887755543
No 348
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=39.12 E-value=86 Score=27.64 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.3
Q ss_pred cEEEEEcCCCccC--HHHHHHHHHHHHh
Q 047833 6 ETIVLFPFMAQGH--IIPFLALALHLEK 31 (473)
Q Consensus 6 ~~il~~~~~~~GH--~~p~l~La~~L~~ 31 (473)
+||++..|+-+|+ .||.-.+++.|.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 4788877765554 7999999999975
No 349
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.90 E-value=45 Score=34.26 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=26.3
Q ss_pred HHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 102 FKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 102 ~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
+.+++++. +||+|+.++. ...+|+.+|||++.++
T Consensus 366 i~~~I~~~-------~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 366 VGDMIARV-------EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHhc-------CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 34555555 8999999963 5667899999999875
No 350
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=38.68 E-value=2.8e+02 Score=26.23 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=23.2
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 117 KPLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
+.|++|+... +.+++|..+|+|.|.++.
T Consensus 253 ~a~l~I~nDS--Gp~HlA~A~g~p~valfG 280 (322)
T PRK10964 253 GAKAVVSVDT--GLSHLTAALDRPNITLYG 280 (322)
T ss_pred hCCEEEecCC--cHHHHHHHhCCCEEEEEC
Confidence 3599999864 458999999999999865
No 351
>PRK04940 hypothetical protein; Provisional
Probab=38.61 E-value=90 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.9
Q ss_pred CccEEEECCCcc-hHHHHHHHhCCceEEEecch
Q 047833 117 KPLCIITDMFFG-WCKEIAQEYGIFHAIFIGGG 148 (473)
Q Consensus 117 ~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~~~ 148 (473)
+++++|..++.- ++.-+|+.+|+|.|.++|+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 357777776544 67789999999999998753
No 352
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=38.53 E-value=60 Score=30.28 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+.+|+++..|..|. .+|+.|++ +||.|.++......+..+.
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~-~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKE-AGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHH-cCCeEEEEeecCcHHHHHH
Confidence 45788888887775 57999999 9999999998887766555
No 353
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.51 E-value=42 Score=34.47 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.7
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 117 KPLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
+||+||.++. ...+|+++|||++.++.
T Consensus 364 ~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 8999999963 66789999999998753
No 354
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=38.38 E-value=56 Score=29.71 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=31.7
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 5 KETIVLFPF-MAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~-~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|+.|++.+. |+.|-..=...||..|++ .|++|..+=-.+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID~dp 40 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAIDLDP 40 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCc
Confidence 346665555 788999999999999999 999999985443
No 355
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=38.32 E-value=2.7e+02 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVN 41 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~ 41 (473)
+-.|.+++..+.|-.+..+.+|-.... +|++|.++-
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQ 57 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG-HGKKVGVVQ 57 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEEE
Confidence 347889999999999999999998888 999999975
No 356
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.29 E-value=51 Score=33.00 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 102 FKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 102 ~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
+.+++++. +||++|.+.. ...+|+++|+|++.++
T Consensus 362 ~~~~i~~~-------~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 362 VGDMIART-------EPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHhh-------CCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 44555555 8999999974 4567899999999874
No 357
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=37.86 E-value=66 Score=30.06 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHhh-
Q 047833 291 TIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALSH- 369 (473)
Q Consensus 291 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~~- 369 (473)
..+.+..+.+.+++...+.+.||.+.... .-.++.++++...+-++|++ ||-..-..+++-++++
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~------------ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~~l~~~ 110 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY------------GANRLLPYLDYDLIRANPKI--FVGYSDITALHLALYAK 110 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC------------CHHHhhhhCCHHHHhhCCeE--EEEecHHHHHHHHHHHh
Confidence 34567788899999999999999987541 22445577887887788875 8988888888888764
Q ss_pred -CCcEEeccccc
Q 047833 370 -GVPIIGWPLAA 380 (473)
Q Consensus 370 -GvP~l~~P~~~ 380 (473)
|++.+.-|...
T Consensus 111 ~g~~t~hGp~~~ 122 (282)
T cd07025 111 TGLVTFHGPMLA 122 (282)
T ss_pred cCceEEECcccc
Confidence 88887777643
No 358
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.85 E-value=2.8e+02 Score=27.83 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|+|||++..+.. .+.+++++++ .|++|+.+.+..
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~-~G~~vv~~~~~~ 35 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKE-LGIKTVAVHSTA 35 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHH-cCCeEEEEcChh
Confidence 468998855432 5888999999 999999986654
No 359
>PRK08322 acetolactate synthase; Reviewed
Probab=37.77 E-value=1.1e+02 Score=31.70 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=22.2
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..++++|.|-| .+++|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44678887765 7889999999999984
No 360
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=37.76 E-value=97 Score=31.53 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~ 65 (473)
+.++++...- =.-++.+|+.|.+ .|+++. ++....+.+++ .|+.+..+.
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L~~-lGfeI~--AT~GTak~L~e-----~GI~v~~V~ 52 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKALVE-LGVEIL--STGGTAKLLAE-----AGIPVTEVS 52 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHHHH-CCCEEE--EcchHHHHHHH-----CCCeeEEee
Confidence 3455544432 4558899999999 999994 46777888888 677777665
No 361
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=37.72 E-value=1.1e+02 Score=32.19 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=21.9
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..++++|.|-| ++++|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 44578887765 7889999999999984
No 362
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=37.67 E-value=4.6e+02 Score=26.76 Aligned_cols=167 Identities=11% Similarity=0.010 Sum_probs=97.4
Q ss_pred EEEEeeCCccc-CCHHHHHHHHHHHHhCCCceEEEECCCCCCCccc----cccccCCcEEEecccC-hHHhhccCCccee
Q 047833 281 VLYVSFGSQNT-IATSQMMQLAMALEASGKNFIWVVRPPIGFDINS----EIKCSGQGLVVHKWAP-QVEILSHRSVSVF 354 (473)
Q Consensus 281 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~----~~~~~~~nv~~~~~vp-~~~ll~~~~v~~~ 354 (473)
.++..-|.... ...+.+...+.-+-+.+.++++.-..+ ..-++ .....+.++.+.-|.. ....+-++..+.+
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd--~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~ 372 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGD--PELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVI 372 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCc--HHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEE
Confidence 44445555554 335777777777777676665544321 11111 1223455666666654 3332223333334
Q ss_pred Eec--c-Ccc-hHHHHHhhCCcEEeccccc------cchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCCh
Q 047833 355 LSH--C-GWN-SVLEALSHGVPIIGWPLAA------EQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNETE 424 (473)
Q Consensus 355 I~H--G-G~g-t~~eal~~GvP~l~~P~~~------DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~ 424 (473)
+.= + ++| |=++++++|.+-|+.+..+ |-..++ .... |.|..... .+++.++.++.+.+.
T Consensus 373 lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~-----~~~~~l~~al~rA~~--- 441 (487)
T COG0297 373 LMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ-----TNPDHLANALRRALV--- 441 (487)
T ss_pred EeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec-----CCHHHHHHHHHHHHH---
Confidence 332 1 233 5579999999888888743 444444 3445 77777765 499999999998876
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Q 047833 425 KGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASM 467 (473)
Q Consensus 425 ~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (473)
-|+.+-..++...+.+| ...-|-.....+.++..+.
T Consensus 442 ---~y~~~~~~w~~~~~~~m----~~d~sw~~sa~~y~~lY~~ 477 (487)
T COG0297 442 ---LYRAPPLLWRKVQPNAM----GADFSWDLSAKEYVELYKP 477 (487)
T ss_pred ---HhhCCHHHHHHHHHhhc----ccccCchhHHHHHHHHHHH
Confidence 45555555677777666 5555556666666665443
No 363
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=37.62 E-value=61 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
..+|+++..|..| .+.++.|.+ .||+|+++.+..
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~-~ga~V~VIsp~~ 46 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKD-TGAFVTVVSPEI 46 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHh-CCCEEEEEcCcc
Confidence 3578888776443 788999999 999999996443
No 364
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=37.30 E-value=53 Score=32.88 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
++.+++++. +||++|.+.. ...+|+++|||++.+.
T Consensus 363 e~~~~l~~~-------~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 363 DIESYAKEL-------KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHhc-------CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 445555555 8999999975 5789999999999863
No 365
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=37.26 E-value=1.5e+02 Score=27.06 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=36.1
Q ss_pred CCCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 047833 3 QRKETIVLFPF-MAQGHIIPFLALALHLEKTNKYTITFVNTPLNLR 47 (473)
Q Consensus 3 ~~~~~il~~~~-~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
++..|-.|+.+ |+.|-..-.-.||-.|.. -+|.|.++++.+...
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~-~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAK-VRESVLIISTDPAHN 60 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhc-cCCceEEeecCcccc
Confidence 34556666666 688999999999999999 999999999888543
No 366
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=37.25 E-value=30 Score=29.86 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=23.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
||.++. +.|++- -+|+++... |||+||-++-.+.
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~-RGHeVTAivRn~~ 35 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALK-RGHEVTAIVRNAS 35 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHh-CCCeeEEEEeChH
Confidence 565443 334332 367899999 9999999986654
No 367
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.24 E-value=48 Score=33.13 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=26.9
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
++.+++++. +||+||.+.. ...+|+++|+|++.+.
T Consensus 362 el~~~i~~~-------~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 362 DLESLAKEE-------PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHhhcc-------CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 344455555 8999999975 4688999999999863
No 368
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=37.12 E-value=1.6e+02 Score=30.64 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=21.7
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..++++|.|-| ++++|...++|+|++.
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34577787765 7889999999999984
No 369
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=36.90 E-value=2e+02 Score=25.01 Aligned_cols=103 Identities=9% Similarity=0.095 Sum_probs=53.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCc--EEEEEcCCc-ch---hhhhccCCCCCCceEEecCCCCCCCCCCCCCCC
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKY--TITFVNTPL-NL---RKLKSSVPQNSSINLLEIPFDSIDHNLPPCTEN 79 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh--~Vt~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (473)
+||+++.++..+-+ ..+.+.+.+ .++ +|.++.+.. .. +..++ .++.+..+... .+..
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~-~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~~~----~~~~---- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKE-GKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLSLK----DFPS---- 63 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHc-CCCCceEEEEEECCccchHHHHHHH-----cCCCEEEECcc----ccCc----
Confidence 36887777655444 456666776 554 677654332 22 22333 56666554311 1110
Q ss_pred CCCCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEecc
Q 047833 80 TDSVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~~ 147 (473)
-....+.+.+++++. +||++|+-.+.. ....+-......++.++++
T Consensus 64 ---------------~~~~~~~~~~~l~~~-------~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 64 ---------------REAFDQAIIEELRAH-------EVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred ---------------hhhhhHHHHHHHHhc-------CCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
Confidence 011234557778888 899998876533 2223333334445666543
No 370
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=36.90 E-value=47 Score=28.04 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc--hhhhhccCCCCCCceEEec
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN--LRKLKSSVPQNSSINLLEI 64 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~ 64 (473)
..+|+++-+|++||. -|.-|++ .|++|++...+.. .+..++ .|++...+
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrD-SG~~V~Vglr~~s~s~~~A~~-----~Gf~v~~~ 54 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRD-SGVNVIVGLREGSASWEKAKA-----DGFEVMSV 54 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHH-CC-EEEEEE-TTCHHHHHHHH-----TT-ECCEH
T ss_pred CCEEEEECCChHHHH-----HHHHHHh-CCCCEEEEecCCCcCHHHHHH-----CCCeeccH
Confidence 458999999999985 4778999 9999999876654 455556 55554433
No 371
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=36.80 E-value=45 Score=32.05 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|+||.|+..|..| ..+|..|.+ +||+|+++......+.+.+
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~-~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAA-AGADVTLIGRARIGDELRA 42 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHh-cCCcEEEEecHHHHHHHHh
Confidence 3589999888776 467889999 9999999986543344444
No 372
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=36.34 E-value=2.4e+02 Score=23.17 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCCcchhhhhccCCCCC-CceEEecCCCCCCCCCCCCCCCCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTN--KYTITFVNTPLNLRKLKSSVPQNS-SINLLEIPFDSIDHNLPPCTENTD 81 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 81 (473)
+++|++.. ...+=.-++.+++.|.+ . ||++ ++++...+.+++ . |+.+..+-. + +.
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~-ll~Gf~l--~AT~gTa~~L~~-----~~Gi~v~~vi~-----~-~~------ 61 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKD-LLEQHEL--YATGTTGGLIQE-----ATGLDVTRLLS-----G-PL------ 61 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHH-HhcCCEE--EEeChHHHHHHh-----ccCCeeEEEEc-----C-CC------
Confidence 45566655 44667778999999999 8 9995 345677777777 4 566554410 0 00
Q ss_pred CCChhhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECC--Ccc--------hHHHHHHHhCCceEEE
Q 047833 82 SVPYHLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDM--FFG--------WCKEIAQEYGIFHAIF 144 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~--~~~--------~~~~~A~~~giP~v~~ 144 (473)
...+.+.+++++- +.|+||... ... ....+|-..+||+++.
T Consensus 62 ---------------gg~~~i~~~I~~g-------~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 62 ---------------GGDQQIGALIAEG-------KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ---------------CCchhHHHHHHcC-------ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 0113345666666 899999843 322 1225688889999985
No 373
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=36.27 E-value=3.9e+02 Score=25.52 Aligned_cols=27 Identities=15% Similarity=-0.010 Sum_probs=22.5
Q ss_pred ccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 118 PLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 118 pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
.|++|+... +.+.+|..+|+|+|.++.
T Consensus 261 a~l~Vs~DS--Gp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 261 ARLFIGVDS--VPMHMAAALGTPLVALFG 287 (344)
T ss_pred CCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 499999854 468999999999999854
No 374
>PLN02735 carbamoyl-phosphate synthase
Probab=36.23 E-value=2.5e+02 Score=32.06 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCC--ccCH----HHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPFMA--QGHI----IPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~~~--~GH~----~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
++.||+++..|. .|+. +.-..++++|++ .|++|+.+.+.+
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke-~G~~Vi~vd~np 67 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKE-EGYEVVLINSNP 67 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHH-cCCEEEEEeCCc
Confidence 356898887764 2322 457789999999 999999987554
No 375
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=36.08 E-value=1.5e+02 Score=27.91 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+..|.+...++.|--.-+..|+..|.+ +|+.|.++.....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRR-RGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 445567777899999999999999999 9999999886654
No 376
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.04 E-value=91 Score=25.30 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNL 46 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~ 46 (473)
+.||++...+..+|=..---++..|+. .|++|...+.....
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~-~GfeVi~lg~~~s~ 42 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYAD-LGFDVDVGPLFQTP 42 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHh-CCcEEEECCCCCCH
Confidence 578999999999999999999999999 99999998865443
No 377
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=36.00 E-value=51 Score=33.86 Aligned_cols=26 Identities=12% Similarity=-0.058 Sum_probs=22.5
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 117 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
+||++|.+.. +..+|+.+|||++.+.
T Consensus 437 ~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 7999999964 6788999999999873
No 378
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=35.87 E-value=2e+02 Score=27.24 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCCc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTN--KYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~r--Gh~Vt~~~~~~ 44 (473)
|+||+++..++. + .+++.|++ . ||+|..+...+
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~-~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKK-SLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHH-hccCCEEEEECCCC
Confidence 568999888543 2 77899999 7 59999986554
No 379
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=35.57 E-value=31 Score=31.03 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=25.1
Q ss_pred EEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEc
Q 047833 7 TIVLFPFMAQGHIIPF------------LALALHLEKTNKYTITFVN 41 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~------------l~La~~L~~~rGh~Vt~~~ 41 (473)
||++.++|++=.+.|. .++|++|.+ +|++|+++.
T Consensus 1 ~vliT~G~T~e~iD~VR~itN~SSGgIG~AIA~~la~-~Ga~Vvlv~ 46 (227)
T TIGR02114 1 KILVTSGGTSEPIDSVRSITNHSTGHLGKIITETFLS-AGHEVTLVT 46 (227)
T ss_pred CEEEccCCccCCCCCceeecCCcccHHHHHHHHHHHH-CCCEEEEEc
Confidence 3566666666555553 488999999 999999975
No 380
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.52 E-value=57 Score=30.66 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=28.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
||+++..|+.| ..+|..|.+ .||+|+++..+...+.+.+
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~-~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLE-AGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHH-CCCceEEEecHHHHHHHHh
Confidence 68888777666 467889999 9999999987433444444
No 381
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=35.42 E-value=21 Score=27.88 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=38.4
Q ss_pred HhhCCcEEeccccccchhhHHHHHHhhcceEEEec-----------CCCCccCHHHHHHHHHHH
Q 047833 367 LSHGVPIIGWPLAAEQFYNSKLLEEEIGVCVEVAR-----------GKSSEVLKKDIAAKIELV 419 (473)
Q Consensus 367 l~~GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~-----------~~~~~~~~~~l~~~i~~l 419 (473)
.+|+.++...|..+|.-.|+-|+. . |.-..++. +.-...+.|++..+|+-.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRia-q-G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M 121 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIA-Q-GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFM 121 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHH-h-chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHH
Confidence 566778889999999999999998 5 55443332 444568889999888743
No 382
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=35.39 E-value=51 Score=33.87 Aligned_cols=44 Identities=9% Similarity=-0.045 Sum_probs=35.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLK 50 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
.-+++...++.|-..-...++..... .|..|.+++.+...+.+.
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~i~ 317 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQLI 317 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHHHH
Confidence 34566777788999999999998889 999999999877655443
No 383
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.38 E-value=49 Score=28.33 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHH-HhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCC--------CCCCC-----CCCCCCC
Q 047833 17 GHIIPFLALALHL-EKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSID--------HNLPP-----CTENTDS 82 (473)
Q Consensus 17 GH~~p~l~La~~L-~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~l~~-----~~~~~~~ 82 (473)
+.+.-.+..|+.| .+ .|.+|.+.-.. ..+.+++. ..+....++.-..+ ..... ++....
T Consensus 17 ~~~e~~v~~a~~~~~~-~g~dViIsRG~-ta~~lr~~----~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~- 89 (176)
T PF06506_consen 17 ASLEEAVEEARQLLES-EGADVIISRGG-TAELLRKH----VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNII- 89 (176)
T ss_dssp --HHHHHHHHHHHHTT-TT-SEEEEEHH-HHHHHHCC-----SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-S-
T ss_pred ecHHHHHHHHHHhhHh-cCCeEEEECCH-HHHHHHHh----CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccccc-
Confidence 5677788999999 78 99999887533 34444442 23444444421000 00000 000000
Q ss_pred CChhhHHHHHHH-H----HhhhHHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEecch
Q 047833 83 VPYHLVSKLIEA-T----LSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIGGG 148 (473)
Q Consensus 83 ~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~~~ 148 (473)
.....+..++.. + -.....+...+++.... +.|+||.+.. ...+|+.+|+|++.+.+..
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~----G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE----GVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT----T--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc----CCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 011122222210 0 12244555666655433 7999999964 4689999999999986643
No 384
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.04 E-value=79 Score=28.37 Aligned_cols=42 Identities=24% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHH----hCCceEEEecchH
Q 047833 101 HFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQE----YGIFHAIFIGGGG 149 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~----~giP~v~~~~~~~ 149 (473)
.....+++| +||++|.-+--. .+...|+. .|||+|+++-.|.
T Consensus 51 ~~~~~~~~~-------~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 51 VVKKMLEEW-------KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHhh-------CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 445667899 999987764332 34455544 4999999976554
No 385
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.86 E-value=71 Score=28.26 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
|+++.+.-.|-.| -.||+.|.+ .||+|++.+....
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~-ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAK-AGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHh-CCCeEEEecCCCh
Confidence 3456665555333 578899999 9999999975554
No 386
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.85 E-value=46 Score=33.21 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=28.8
Q ss_pred HHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 100 PHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
..+.+++++. +||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~-------~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRL-------KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHh-------CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3445667777 9999999975 5678999999998764
No 387
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=34.85 E-value=35 Score=27.29 Aligned_cols=28 Identities=25% Similarity=0.193 Sum_probs=22.6
Q ss_pred eeEeccCcchHHHHHhh----C-----CcEEeccccc
Q 047833 353 VFLSHCGWNSVLEALSH----G-----VPIIGWPLAA 380 (473)
Q Consensus 353 ~~I~HGG~gt~~eal~~----G-----vP~l~~P~~~ 380 (473)
.+|.-||-||+.|++.. . +|+.++|...
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 68999999999998653 3 6889999744
No 388
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=34.81 E-value=75 Score=26.84 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=31.7
Q ss_pred cEEE-EEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 6 ETIV-LFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 6 ~~il-~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
++|+ |+.+-..|-..=+-+|.+.|++ +||.|..+=+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA-RGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHh-CCcEEEEEEecC
Confidence 4555 7777788999999999999999 999999986444
No 389
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=34.55 E-value=1.7e+02 Score=30.66 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.2
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..++++|.|-| .+++|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44688888865 6789999999999985
No 390
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=34.29 E-value=3e+02 Score=25.42 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=63.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhcc-CCCCCCceEEecCCCCCCCCCCCCCCCCCCCCh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKSS-VPQNSSINLLEIPFDSIDHNLPPCTENTDSVPY 85 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (473)
.|-+...|+-|-=.-.-.|++.|++ +||+|-+++..+....--.+ .. ..++...+..+ +.-+- ...+.
T Consensus 31 ~iGiTG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlLG--DRiRM~~~~~d------~~vfI--RS~at 99 (266)
T PF03308_consen 31 VIGITGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALLG--DRIRMQELSRD------PGVFI--RSMAT 99 (266)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS----GGGCHHHHTS------TTEEE--EEE--
T ss_pred EEEeeCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCcccc--cHHHhcCcCCC------CCEEE--eecCc
Confidence 4558888999999999999999999 99999999977754321110 01 33333332211 00000 00000
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcc--hHHHHHHHhCCceEEEec
Q 047833 86 HLVSKLIEATLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--WCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~~ 146 (473)
+.....+.........+++.. ++|+||.+..-. .-..+++....-++.+.|
T Consensus 100 ---RG~lGGls~~t~~~v~ll~aa-------G~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 100 ---RGSLGGLSRATRDAVRLLDAA-------GFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp ----SSHHHHHHHHHHHHHHHHHT-------T-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred ---CCCCCCccHhHHHHHHHHHHc-------CCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 122223333444455666666 899999996544 234677777776666544
No 391
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=34.13 E-value=4.2e+02 Score=26.11 Aligned_cols=62 Identities=23% Similarity=0.155 Sum_probs=37.0
Q ss_pred eEeccCcchHHHHHhhCCcEEe--ccccccc------hhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 354 FLSHCGWNSVLEALSHGVPIIG--WPLAAEQ------FYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 354 ~I~HGG~gt~~eal~~GvP~l~--~P~~~DQ------~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
+-|+ |+.++..++.+|.|+-. ++-.+|- -.|+.++.+.+-..+ --++.+++..+|.++++++
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~v-------vvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRV-------VVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceE-------EEeccHHHHHHHHHHHHhh
Confidence 4444 56688888888888532 1223332 234444443312222 2356789999999999986
No 392
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.07 E-value=62 Score=32.00 Aligned_cols=46 Identities=20% Similarity=0.043 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
++.||++.-.|+. ..+-...+.+.|++ .|++|.++.++.....+..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~-~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRK-AGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHh-CCCEEEEEECHhHHHHHhH
Confidence 3458887776665 45577899999999 9999999998887666654
No 393
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=33.81 E-value=2.6e+02 Score=24.02 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=53.1
Q ss_pred chhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccc-cccccCCcEEEecccC-h
Q 047833 265 STELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINS-EIKCSGQGLVVHKWAP-Q 342 (473)
Q Consensus 265 ~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~-~~~~~~~nv~~~~~vp-~ 342 (473)
...++-++|.+.. ..+|+.|. ..-.+....++..+.+-+++=+..... ...+ ....... .++++... .
T Consensus 20 ~A~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l--~~~~~~~~~~~~-~i~~~~~~~R 89 (178)
T TIGR00730 20 LAAELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGL--FSGEVVHQNLTE-LIEVNGMHER 89 (178)
T ss_pred HHHHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhh--hhhhccCCCCCc-eEEECCHHHH
Confidence 3455666775542 45566653 123444566666666666655553221 0001 1111222 33334443 3
Q ss_pred HHhh-ccCCcceeEeccCcchHHHHHh---------hCCcEEecc
Q 047833 343 VEIL-SHRSVSVFLSHCGWNSVLEALS---------HGVPIIGWP 377 (473)
Q Consensus 343 ~~ll-~~~~v~~~I~HGG~gt~~eal~---------~GvP~l~~P 377 (473)
..++ ..++. .++--||.||+-|... +.+|++++=
T Consensus 90 k~~m~~~sda-~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 90 KAMMAELADA-FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHhCCE-EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 3333 34443 5677789999988733 589998874
No 394
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=33.64 E-value=1.8e+02 Score=27.12 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=20.7
Q ss_pred cceeEeccCcchHHHHHhh-----CCc-EEeccc
Q 047833 351 VSVFLSHCGWNSVLEALSH-----GVP-IIGWPL 378 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~-----GvP-~l~~P~ 378 (473)
.+.+|.-||-||+.|++.. ..| +-++|.
T Consensus 58 ~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3469999999999997653 344 445896
No 395
>PRK14099 glycogen synthase; Provisional
Probab=33.36 E-value=68 Score=32.73 Aligned_cols=38 Identities=8% Similarity=-0.028 Sum_probs=28.1
Q ss_pred CCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPF--------MAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~--------~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+++||++++. |+.|++ +-+|.++|++ +||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~-~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADV--AGALPAALKA-HGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHH-CCCcEEEEeCCC
Confidence 3578987764 344444 4577889999 999999998755
No 396
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.19 E-value=55 Score=32.25 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+.||++.-.|+.|= .-.+.+.+.|++ .|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~-~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVR-QGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHh-CCCEEEEEECHhHHHHHHH
Confidence 35787776665554 558999999999 9999999998887766654
No 397
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=33.19 E-value=4e+02 Score=24.69 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=43.9
Q ss_pred HHHHHHhCCCceEEEECCCCCCCccc--cccc-cCCcEE----EecccChHHhhccCCcceeEeccC-cchHHHHHhhCC
Q 047833 300 LAMALEASGKNFIWVVRPPIGFDINS--EIKC-SGQGLV----VHKWAPQVEILSHRSVSVFLSHCG-WNSVLEALSHGV 371 (473)
Q Consensus 300 ~~~al~~~~~~~i~~~~~~~~~~~~~--~~~~-~~~nv~----~~~~vp~~~ll~~~~v~~~I~HGG-~gt~~eal~~Gv 371 (473)
+.+.+++.+..|+++........... ...- ....+. =.++=|+.+.|+.++ ++|.-.. .+-..||+..|+
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ad--yii~TaDSinM~sEAasTgk 266 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAAD--YIISTADSINMCSEAASTGK 266 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcc--eEEEecchhhhhHHHhccCC
Confidence 44556667888888876542111001 0000 011111 124558999998877 4655555 577789999999
Q ss_pred cEEec
Q 047833 372 PIIGW 376 (473)
Q Consensus 372 P~l~~ 376 (473)
|+-+.
T Consensus 267 Pv~~~ 271 (329)
T COG3660 267 PVFIL 271 (329)
T ss_pred CeEEE
Confidence 98664
No 398
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=33.15 E-value=4.2e+02 Score=26.61 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~ 43 (473)
|.||+++..+ .+ .+.+++++++ .|++|+.+.+.
T Consensus 2 ~kkili~g~g---~~--~~~~~~aa~~-lG~~vv~~~~~ 34 (449)
T TIGR00514 2 LDKILIANRG---EI--ALRILRACKE-LGIKTVAVHST 34 (449)
T ss_pred cceEEEeCCC---HH--HHHHHHHHHH-cCCeEEEEECh
Confidence 4588888443 33 7889999999 99999998764
No 399
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=33.10 E-value=1.8e+02 Score=26.82 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhh
Q 047833 20 IPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFK 99 (473)
Q Consensus 20 ~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (473)
.-+..|++.|.+ +|++|.+++.+...+..+.... . ++. .......... ..
T Consensus 140 ~~~~~l~~~l~~-~~~~ivl~g~~~e~~~~~~i~~---~-----~~~-------~~~~~~~~~~--------------~l 189 (279)
T cd03789 140 ERFAALADRLLA-RGARVVLTGGPAERELAEEIAA---A-----LGG-------PRVVNLAGKT--------------SL 189 (279)
T ss_pred HHHHHHHHHHHH-CCCEEEEEechhhHHHHHHHHH---h-----cCC-------CccccCcCCC--------------CH
Confidence 357899999999 9999999987775554433110 0 000 0000000000 11
Q ss_pred HHHHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 100 PHFKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
.++..+++. .|++|+... +...+|..+|+|++.+..
T Consensus 190 ~e~~~li~~---------~~l~I~~Ds--g~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 190 RELAALLAR---------ADLVVTNDS--GPMHLAAALGTPTVALFG 225 (279)
T ss_pred HHHHHHHHh---------CCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 223344444 489998753 467888999999999864
No 400
>PRK13604 luxD acyl transferase; Provisional
Probab=33.07 E-value=84 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEE
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFV 40 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~ 40 (473)
+...+++++|..++-.-+..+|+.|.+ +|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~-~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSS-NGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHH-CCCEEEEe
Confidence 446778888888887779999999999 99998876
No 401
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=32.90 E-value=58 Score=30.59 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=28.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC-cchhhhhc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTP-LNLRKLKS 51 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~-~~~~~v~~ 51 (473)
||.++..|..| ..+|..|.+ .||+|+++... ...+.+.+
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQ-AGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHh-CCCeEEEEECChHHHHHHHH
Confidence 68888777666 567888999 99999999863 33344444
No 402
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=32.74 E-value=3.6e+02 Score=24.03 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=35.0
Q ss_pred hhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEE
Q 047833 267 ELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWV 314 (473)
Q Consensus 267 ~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (473)
+.+.+|+... .+.+.||=+-|........+....++|++.|+.+.-.
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L 68 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSEL 68 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeee
Confidence 4455555553 4679999888887777788888999999998775433
No 403
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=32.65 E-value=1.2e+02 Score=30.74 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCC
Q 047833 19 IIPFLALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPP 75 (473)
Q Consensus 19 ~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (473)
=.-++.+|+.|.+ .|+++. ++....+.++. .|+.+..+. +..++|+
T Consensus 10 K~~iv~lAk~L~~-lGfeIi--ATgGTak~L~e-----~GI~v~~Vs---k~TgfPE 55 (511)
T TIGR00355 10 KTGIVEFAQGLVE-RGVELL--STGGTAKLLAE-----AGVPVTEVS---DYTGFPE 55 (511)
T ss_pred cccHHHHHHHHHH-CCCEEE--EechHHHHHHH-----CCCeEEEee---cccCCch
Confidence 3457899999999 999994 56777888888 677777766 3344544
No 404
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=32.62 E-value=79 Score=30.01 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHHh--h
Q 047833 292 IATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEALS--H 369 (473)
Q Consensus 292 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal~--~ 369 (473)
.+.+....+.+++...+.+.||.+...- .-.++.++++...+-++|++ ||-..-..+++-+++ +
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~------------g~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~al~~~~ 115 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD------------DSNELLPYLDYELIKKNPKI--FIGYSDITALHLAIYKKT 115 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc------------CHhhhhhhcCHHHHhhCCCE--EEeccHHHHHHHHHHHhc
Confidence 4567788899999999999999986541 22455577888888788874 888888888888874 4
Q ss_pred CCcEEeccccc
Q 047833 370 GVPIIGWPLAA 380 (473)
Q Consensus 370 GvP~l~~P~~~ 380 (473)
|.+.+.-|...
T Consensus 116 g~~t~hGp~~~ 126 (308)
T cd07062 116 GLVTYYGPNLL 126 (308)
T ss_pred CCeEEECcccc
Confidence 77777777643
No 405
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=32.57 E-value=3.4e+02 Score=23.69 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=23.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVN 41 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~ 41 (473)
|.++++.+.|-....+.+|-.-.- +|.+|.++-
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~G-hG~rv~vvQ 63 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALG-HGLRVGVVQ 63 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhc-CCCEEEEEE
Confidence 567888888988777666655555 777777764
No 406
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=32.49 E-value=1.4e+02 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 21 PFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 21 p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
--+.+|..|.+ .|.+|+++...+
T Consensus 10 ig~E~A~~l~~-~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAE-LGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESSS
T ss_pred HHHHHHHHHHH-hCcEEEEEeccc
Confidence 45789999999 999999997554
No 407
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=32.36 E-value=1.6e+02 Score=24.76 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=26.4
Q ss_pred EEEEeeCCcccCCHHHHHHHHHHHHhCCC-ceEEE
Q 047833 281 VLYVSFGSQNTIATSQMMQLAMALEASGK-NFIWV 314 (473)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i~~ 314 (473)
.+|+++||-.......++..+.++.+.+. +++-+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999887777778888999988764 44433
No 408
>PRK11914 diacylglycerol kinase; Reviewed
Probab=32.34 E-value=1.3e+02 Score=28.35 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEeccCcchHHHHH----hh
Q 047833 294 TSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCGWNSVLEAL----SH 369 (473)
Q Consensus 294 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG~gt~~eal----~~ 369 (473)
.+.+..+.+.|++.+..+.+...... .+. . ..+ .......+ +.+|--||-||+.|++ ..
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~-~~~--~-----------~~a-~~~~~~~~--d~vvv~GGDGTi~evv~~l~~~ 87 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDA-HDA--R-----------HLV-AAALAKGT--DALVVVGGDGVISNALQVLAGT 87 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCH-HHH--H-----------HHH-HHHHhcCC--CEEEEECCchHHHHHhHHhccC
Confidence 45566777888888877654332110 000 0 000 11112222 3699999999999987 34
Q ss_pred CCcEEeccc
Q 047833 370 GVPIIGWPL 378 (473)
Q Consensus 370 GvP~l~~P~ 378 (473)
++|+-++|.
T Consensus 88 ~~~lgiiP~ 96 (306)
T PRK11914 88 DIPLGIIPA 96 (306)
T ss_pred CCcEEEEeC
Confidence 799999996
No 409
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=32.17 E-value=2.2e+02 Score=23.78 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.3
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCcEEEEE
Q 047833 12 PFMAQGHIIPFLALALHLEKTNKYTITFV 40 (473)
Q Consensus 12 ~~~~~GH~~p~l~La~~L~~~rGh~Vt~~ 40 (473)
+.+.-|-..-.+.|+..|++ +|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 34567888899999999999 99999996
No 410
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=32.13 E-value=69 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.023 Sum_probs=20.3
Q ss_pred CccEEEECCCcch--HHHHHHHhCCceEEEe
Q 047833 117 KPLCIITDMFFGW--CKEIAQEYGIFHAIFI 145 (473)
Q Consensus 117 ~pD~Vv~d~~~~~--~~~~A~~~giP~v~~~ 145 (473)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 8999998754332 2234567999998874
No 411
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.08 E-value=90 Score=25.22 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
+|++.+..+-+|-.----++..|+. .|++|+..+.....+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~-~GfeVidLG~~v~~e~~ 42 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTE-AGFNVVNLGVLSPQEEF 42 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHH
Confidence 4788888999999999999999999 99999999876654443
No 412
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.02 E-value=73 Score=29.36 Aligned_cols=36 Identities=8% Similarity=0.034 Sum_probs=29.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~ 43 (473)
.|.+..=|+-|-..-...||..|.+ +|++|.++=..
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~-~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAK-LGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecc
Confidence 3445555788999999999999999 99999998443
No 413
>PRK10037 cell division protein; Provisional
Probab=31.96 E-value=75 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.007 Sum_probs=31.3
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 6 ETIVLFPF-MAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 6 ~~il~~~~-~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+.|.+... |+-|-..-...||..|++ +|++|.++=..+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~D~ 40 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACP 40 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHh-cCCcEEEEeCCh
Confidence 35666666 788999999999999999 999999984333
No 414
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=31.91 E-value=1.7e+02 Score=25.51 Aligned_cols=32 Identities=16% Similarity=-0.040 Sum_probs=23.1
Q ss_pred CccEEEECCCcc--hHHHHHHHhCCceEEEecch
Q 047833 117 KPLCIITDMFFG--WCKEIAQEYGIFHAIFIGGG 148 (473)
Q Consensus 117 ~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~~~~ 148 (473)
.||+||.-.... .+..=|..+|||.|.+..+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 689977664333 45567888999999986554
No 415
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=31.71 E-value=1.9e+02 Score=25.66 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=19.8
Q ss_pred EEEEEcCCCcc--CHHHHHHHHHHHHh
Q 047833 7 TIVLFPFMAQG--HIIPFLALALHLEK 31 (473)
Q Consensus 7 ~il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
+|++..++-+| -.||...++++|..
T Consensus 2 ~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 2 TVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 58887776554 48999999999976
No 416
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=31.57 E-value=3.6e+02 Score=23.72 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=76.5
Q ss_pred CCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEec
Q 047833 278 YTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSH 357 (473)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~H 357 (473)
++.++.|..|.++ ..-+..|.+.+.++.++.... .+.-.......++....--.+...+..+. ++|..
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~---~~~l~~l~~~~~i~~~~~~~~~~dl~~~~--lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL---ESELTLLAEQGGITWLARCFDADILEGAF--LVIAA 76 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC---CHHHHHHHHcCCEEEEeCCCCHHHhCCcE--EEEEC
Confidence 3567777777554 234566667888887776422 11101111122444422222234455655 47777
Q ss_pred cCcchHH-----HHHhhCCcEEec--cccccchhhHHHHHHhhcceEEEecC-CCCccCHHHHHHHHHHHHcCChhhHHH
Q 047833 358 CGWNSVL-----EALSHGVPIIGW--PLAAEQFYNSKLLEEEIGVCVEVARG-KSSEVLKKDIAAKIELVMNETEKGIEL 429 (473)
Q Consensus 358 GG~gt~~-----eal~~GvP~l~~--P~~~DQ~~nA~~v~~~lG~g~~l~~~-~~~~~~~~~l~~~i~~ll~~~~~~~~~ 429 (473)
-|...+. +|-..|+|+-++ |-..| +..-..+.+- ++-+.+..+ ++..+ +..|++.|++++.+. . ..+
T Consensus 77 t~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~l-a~~lr~~ie~~l~~~-~-~~~ 151 (205)
T TIGR01470 77 TDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVL-ARLLRERIETLLPPS-L-GDL 151 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHH-HHHHHHHHHHhcchh-H-HHH
Confidence 7765443 444568887433 22222 2222233322 344445442 33333 356888899888654 2 246
Q ss_pred HHHHHHHHHHHHHh
Q 047833 430 RKNAYEVREIIKNA 443 (473)
Q Consensus 430 ~~~a~~l~~~~~~~ 443 (473)
-+.+.++++.+++.
T Consensus 152 ~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 152 ATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666666544
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.41 E-value=3.6e+02 Score=26.98 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=33.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchh
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLE-KTNKYTITFVNTPLNLR 47 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~-~~rGh~Vt~~~~~~~~~ 47 (473)
-++++..++-|-..-...||..|. + +|+.|.+++...++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccch
Confidence 345677778999999999999997 7 899999999887654
No 418
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=31.37 E-value=3e+02 Score=22.69 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|.+...++.|--..+..++..|.+ +|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCC
Confidence 567777888999999999999999 999999987554
No 419
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=31.30 E-value=1.7e+02 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=20.0
Q ss_pred cEEEEEcCCCcc--CHHHHHHHHHHHHh
Q 047833 6 ETIVLFPFMAQG--HIIPFLALALHLEK 31 (473)
Q Consensus 6 ~~il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
|+|++..|+-+| ..||...+++.|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 358877776554 48999999999966
No 420
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=31.24 E-value=1.2e+02 Score=29.46 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCcc-----------c-cccccCCcEEEecccCh---HHhhccCCcc
Q 047833 288 SQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDIN-----------S-EIKCSGQGLVVHKWAPQ---VEILSHRSVS 352 (473)
Q Consensus 288 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~-----------~-~~~~~~~nv~~~~~vp~---~~ll~~~~v~ 352 (473)
|...-....+..+++++.+.+.++.+.+..+...... + ......-.+.+.+|+|| +.+|-.|++
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~- 266 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF- 266 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc-
Q ss_pred eeEeccCcchHHHHHhhCCcEE
Q 047833 353 VFLSHCGWNSVLEALSHGVPII 374 (473)
Q Consensus 353 ~~I~HGG~gt~~eal~~GvP~l 374 (473)
.||= |==|+.-|..+|+|.|
T Consensus 267 NfVR--GEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 267 NFVR--GEDSFVRAQWAGKPFV 286 (374)
T ss_pred ceEe--cchHHHHHHHhCCCce
No 421
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=31.18 E-value=2.9e+02 Score=31.47 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCc--cCH----HHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 5 KETIVLFPFMAQ--GHI----IPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 5 ~~~il~~~~~~~--GH~----~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+.+|+++..|.. |.- +-.++++++|++ .||+|.++...+
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~-~G~~vI~v~~np 598 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRE-LGYETIMINYNP 598 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHh-CCCEEEEEecCC
Confidence 458888877643 331 356889999999 999999987554
No 422
>PLN02727 NAD kinase
Probab=31.10 E-value=88 Score=34.24 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=39.4
Q ss_pred cceeEeccCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcCC
Q 047833 351 VSVFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNET 423 (473)
Q Consensus 351 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~~ 423 (473)
++++|+=||-||++.+++. ++|+|.+- .|-..-. ..+..+++.+.|.+++++.
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~~~iPILGIN-----------------lGrLGFL---Tdi~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRGAVPPVVSFN-----------------LGSLGFL---TSHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEe-----------------CCCcccc---ccCCHHHHHHHHHHHHcCC
Confidence 4579999999999999775 67887773 2222112 3567788999999999876
No 423
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=30.75 E-value=1.6e+02 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhHhhhcCCCCccEEEECCCcc--------------h--------HHHHHHHhCCceEEEecch
Q 047833 98 FKPHFKKLVNDLIDEQNGYKPLCIITDMFFG--------------W--------CKEIAQEYGIFHAIFIGGG 148 (473)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~--------------~--------~~~~A~~~giP~v~~~~~~ 148 (473)
..+.+.+.++++ +||+||++.-+- . ....++.+|||.+.+.+..
T Consensus 236 l~r~l~~sl~ef-------~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGG 301 (324)
T KOG1344|consen 236 LKRCLMQSLAEF-------RPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGG 301 (324)
T ss_pred HHHHHHHHHHhh-------CCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCc
Confidence 344556666777 899999874321 1 1246788999999986654
No 424
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=30.61 E-value=1.4e+02 Score=25.27 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=31.8
Q ss_pred HHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch-------------H--HHHHHHhCCceEEEecc
Q 047833 95 TLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW-------------C--KEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~-------------~--~~~A~~~giP~v~~~~~ 147 (473)
+....+.+.+++++. +||.|+.+..++. + ..++...|||..-+.|.
T Consensus 46 l~~I~~~l~~~i~~~-------~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 46 LKQIYDGLSELIDEY-------QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHh-------CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 344456778889998 9999988854432 1 24667789998887543
No 425
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.50 E-value=4.8e+02 Score=29.78 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCc--cCH----HHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPFMAQ--GHI----IPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~~~~--GH~----~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+..||+++..|.. |+. +....++++|++ .||+|.++...+
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e-~G~~vi~v~~np 51 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE-EGYQVVLVNPNP 51 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH-cCCEEEEEeCCc
Confidence 3468888877643 322 256789999999 999999997554
No 426
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=30.50 E-value=1.2e+02 Score=26.12 Aligned_cols=28 Identities=18% Similarity=-0.024 Sum_probs=22.8
Q ss_pred CccEEEECC--CcchHHHHHHHhCCceEEE
Q 047833 117 KPLCIITDM--FFGWCKEIAQEYGIFHAIF 144 (473)
Q Consensus 117 ~pD~Vv~d~--~~~~~~~~A~~~giP~v~~ 144 (473)
++|.|++=. -++.|..+|..+|+|+|..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 689988763 3346889999999999996
No 427
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=30.37 E-value=47 Score=33.42 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.1
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 117 KPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
+||++|.... +..+|+++|||++.+.
T Consensus 387 ~pdllig~s~---~~~~A~~lgip~~~~~ 412 (443)
T TIGR01862 387 KPDIIFSGIK---EKFVAQKLGVPYRQMH 412 (443)
T ss_pred CCCEEEEcCc---chhhhhhcCCCeEecC
Confidence 8999999864 5789999999999863
No 428
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.27 E-value=93 Score=28.72 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=24.5
Q ss_pred eEEEEeeCCcccCCHH-HHHHHHHHHHh--CCCceEEEECCC
Q 047833 280 SVLYVSFGSQNTIATS-QMMQLAMALEA--SGKNFIWVVRPP 318 (473)
Q Consensus 280 ~~V~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~ 318 (473)
.++++||||....... .+..+.+.+++ .++.+-|...++
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4789999998875544 67777777766 578888887544
No 429
>PRK13768 GTPase; Provisional
Probab=30.21 E-value=1.6e+02 Score=26.90 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=30.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+++...++.|--.-...++..|.. .|++|.++...+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECCC
Confidence 4566666788988889999999999 999999997554
No 430
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=30.02 E-value=2.4e+02 Score=26.81 Aligned_cols=34 Identities=21% Similarity=0.083 Sum_probs=29.2
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 15 AQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.-|-.+-.+.|.+++++ +|.++.|+++...--.+
T Consensus 159 ~vGKrTTa~~L~~~~~e-~G~~a~fvaTgqtgil~ 192 (339)
T COG3367 159 AVGKRTTALELREAARE-EGIKAGFVATGQTGILI 192 (339)
T ss_pred ccchhHHHHHHHHHHHH-hCCccceEecCceeeEE
Confidence 56999999999999999 99999999987753333
No 431
>PLN02240 UDP-glucose 4-epimerase
Probab=29.83 E-value=80 Score=30.29 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVN 41 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~ 41 (473)
|+-++.+|+++ |+.|.+ -..|++.|.+ +||+|+.+.
T Consensus 1 ~~~~~~~vlIt--GatG~i--G~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 1 MSLMGRTILVT--GGAGYI--GSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CCCCCCEEEEE--CCCChH--HHHHHHHHHH-CCCEEEEEe
Confidence 44445566664 455655 3467899999 999999985
No 432
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=29.65 E-value=56 Score=29.35 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 18 HIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 18 H~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|+..|.+.|.+|++ +||+|.++....
T Consensus 47 ~~saMRhfa~~L~~-~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRA-KGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHH-TT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence 56778899999999 999999998763
No 433
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=29.64 E-value=1.8e+02 Score=28.02 Aligned_cols=27 Identities=15% Similarity=-0.089 Sum_probs=22.4
Q ss_pred ccEEEECCCcchHHHHHHHhCCceEEEec
Q 047833 118 PLCIITDMFFGWCKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 118 pD~Vv~d~~~~~~~~~A~~~giP~v~~~~ 146 (473)
.|++|+... +.+.+|..+|+|+|.++.
T Consensus 263 a~l~v~nDS--Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 263 AQLFIGVDS--APAHIAAAVNTPLICLFG 289 (352)
T ss_pred CCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 499999864 458999999999999864
No 434
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.49 E-value=3.7e+02 Score=30.67 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCc--cC----HHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPFMAQ--GH----IIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~~~~--GH----~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+.+|+++-.|.. |. =+-.++++++|++ .||+|+++...+
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~-~G~~vI~vn~np 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKK-EGYETIMINNNP 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHH-cCCEEEEEeCCc
Confidence 4568888876532 21 1357888999999 999999987555
No 435
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.48 E-value=67 Score=30.10 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
|+.++.+|.++-.|..|. .+|..|.. .||+|+++-..+.
T Consensus 1 ~~~~~~~V~ViGaG~mG~-----~iA~~~a~-~G~~V~l~d~~~~ 39 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGA-----GIAEVCAR-AGVDVLVFETTEE 39 (286)
T ss_pred CCCCccEEEEEcccHHHH-----HHHHHHHh-CCCEEEEEECCHH
Confidence 666777999998887774 67888899 9999999975554
No 436
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=29.47 E-value=1.7e+02 Score=24.06 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=29.6
Q ss_pred CCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEEC
Q 047833 278 YTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVR 316 (473)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (473)
...+|++.+||-.....+.+..+++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3458999999998777888888888874 4577777664
No 437
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=29.46 E-value=2.5e+02 Score=29.22 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.2
Q ss_pred cceeEeccCcc------hHHHHHhhCCcEEecc
Q 047833 351 VSVFLSHCGWN------SVLEALSHGVPIIGWP 377 (473)
Q Consensus 351 v~~~I~HGG~g------t~~eal~~GvP~l~~P 377 (473)
..++++|.|-| .+++|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44688888866 7789999999999873
No 438
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=29.30 E-value=1.1e+02 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
||++..-++.|--.....+++.|.+ +|.+|.++-..+
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc
Confidence 4788888999999999999999999 999999988766
No 439
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.28 E-value=51 Score=30.06 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=21.5
Q ss_pred ceeEeccCcchHHHHHhh----CCcEEecc
Q 047833 352 SVFLSHCGWNSVLEALSH----GVPIIGWP 377 (473)
Q Consensus 352 ~~~I~HGG~gt~~eal~~----GvP~l~~P 377 (473)
+++|+-||-||++.+++. ++|++.+-
T Consensus 27 Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 469999999999988765 67888774
No 440
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=29.10 E-value=41 Score=30.70 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCc
Q 047833 22 FLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 22 ~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.-.|+++|++ .||+|++++|..
T Consensus 22 ~~~L~kaL~~-~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAK-QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHH-TT-EEEEEEE-T
T ss_pred HHHHHHHHHh-cCCeEEEEEccc
Confidence 4578999999 999999999766
No 441
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=29.10 E-value=1.6e+02 Score=29.25 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEE
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTN-KYTITFV 40 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~r-Gh~Vt~~ 40 (473)
+||+++..|++.| +|+++|++ . |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~-~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQ-SPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHh-CCCCCEEEE
Confidence 4899999987776 59999988 5 4444444
No 442
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=28.96 E-value=1.1e+02 Score=24.71 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCceEEEECCCCCCCc-cc-cccccCCcEEEecccC--hHHhhccCCcceeEeccCcchHHHHHh------
Q 047833 299 QLAMALEASGKNFIWVVRPPIGFDI-NS-EIKCSGQGLVVHKWAP--QVEILSHRSVSVFLSHCGWNSVLEALS------ 368 (473)
Q Consensus 299 ~~~~al~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~nv~~~~~vp--~~~ll~~~~v~~~I~HGG~gt~~eal~------ 368 (473)
+..++..+.+-+++=+..... .+ ++ ........+.+ +... ...++..++. .++.-||.||.-|...
T Consensus 3 a~~~ga~~~gG~viGi~p~~~--~~~~~~~~~~~~~~~~~-~~~~~Rk~~m~~~sda-~I~lPGG~GTl~El~~~~~~~~ 78 (133)
T PF03641_consen 3 AVAKGAKEAGGRVIGIIPEFL--FPFEEPPNPYVTELIIV-DDMFERKEIMIESSDA-FIALPGGIGTLDELFEALTLMQ 78 (133)
T ss_dssp HHHHHHHHTTTTEEEEEETTG--TTTTTTCCTTSSEEEEE-SSHHHHHHHHHHHESE-EEEES-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEecCcc--ccccccCCcccCceeEe-CChHHHHHHHHHhCCE-EEEEecCCchHHHHHHHHHHHh
Confidence 345556666666666654321 11 11 11112223333 4443 3344445554 6788899999988743
Q ss_pred ----hCCcEEeccc
Q 047833 369 ----HGVPIIGWPL 378 (473)
Q Consensus 369 ----~GvP~l~~P~ 378 (473)
..+|++++-.
T Consensus 79 l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 79 LGRHNKVPIILLNI 92 (133)
T ss_dssp TTSSTS-EEEEEEC
T ss_pred hccccCCCEEEeCC
Confidence 2448888763
No 443
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.88 E-value=22 Score=33.01 Aligned_cols=39 Identities=28% Similarity=0.589 Sum_probs=31.5
Q ss_pred ccCcchHH--HHHhhCCcEEeccccccchhhHHH-HHHhhcce
Q 047833 357 HCGWNSVL--EALSHGVPIIGWPLAAEQFYNSKL-LEEEIGVC 396 (473)
Q Consensus 357 HGG~gt~~--eal~~GvP~l~~P~~~DQ~~nA~~-v~~~lG~g 396 (473)
-||||+++ -|-.+||=++.+-+...|..+|+. +.++ |+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-GLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-CCC
Confidence 35887655 566779999999999999999998 5544 888
No 444
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.84 E-value=1.1e+02 Score=27.33 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=28.9
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 047833 10 LFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNL 46 (473)
Q Consensus 10 ~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~ 46 (473)
+-.--+.|--.=..+++.-+.. .||.|++++++...
T Consensus 33 IEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~ 68 (235)
T COG2874 33 IEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELTV 68 (235)
T ss_pred EECCCCccHHHHHHHHHHHHHh-CCceEEEEEechhH
Confidence 3333467777788899999999 99999999988854
No 445
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.67 E-value=1.1e+02 Score=26.67 Aligned_cols=29 Identities=14% Similarity=-0.176 Sum_probs=22.7
Q ss_pred CccEEEECC--CcchHHHHHHHhCCceEEEe
Q 047833 117 KPLCIITDM--FFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 117 ~pD~Vv~d~--~~~~~~~~A~~~giP~v~~~ 145 (473)
++|+|++-. -++.|..+|..+|+|++.+.
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 789998763 23467789999999999974
No 446
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=28.36 E-value=72 Score=25.17 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 19 IIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 19 ~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+.|++.|.-...- +||+++++.|..+.+.+..
T Consensus 9 Vk~L~eIll~Fil-rGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFIL-RGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHh-ccCeeEEEChHHHhccccc
Confidence 5677888888888 9999999998888665544
No 447
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=28.29 E-value=1.4e+02 Score=21.94 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=37.2
Q ss_pred CcEEeccccccchhhHHHHHHhhcceEEEecCCCCccCHHHHHHHHHHHHcC
Q 047833 371 VPIIGWPLAAEQFYNSKLLEEEIGVCVEVARGKSSEVLKKDIAAKIELVMNE 422 (473)
Q Consensus 371 vP~l~~P~~~DQ~~nA~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ll~~ 422 (473)
.|+++--..+=||..=+|-. + |+-..+.. ..++++++.++++.+...
T Consensus 50 lPILIREcSgVqPrl~ARY~-~-G~E~~v~L---~~~s~~~i~kale~l~k~ 96 (97)
T KOG3446|consen 50 LPILIRECSGVQPRLWARYG-N-GVERSVSL---ANLSAPQIHKALENLGKQ 96 (97)
T ss_pred CcEeehhhcCCchHHHHHhc-C-CceEEeeh---hhcchHHHHHHHHHHhcC
Confidence 47888877888887666555 5 88778887 889999999999988753
No 448
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=28.25 E-value=46 Score=33.62 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHHHhHhhhcCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 047833 102 FKKLVNDLIDEQNGYKPLCIITDMFFGWCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 102 ~~~~l~~~~~~~~~~~pD~Vv~d~~~~~~~~~A~~~giP~v~~~ 145 (473)
+.+.+++. +||++|.... ...+|+++|||++.++
T Consensus 387 ~~~~i~~~-------~pDllig~~~---~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 387 LEEIIEKY-------KPDIILTGIR---EGELAKKLGVPYINIH 420 (457)
T ss_pred HHHHHHhc-------CCCEEEecCC---cchhhhhcCCCEEEcc
Confidence 34556666 8999999864 4678999999999863
No 449
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=28.18 E-value=97 Score=27.26 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+.||.+-..++-|-.+-|+.=|..|++ +|.+|.+.-.+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~-~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKE-QGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEEecCC
Confidence 568999999999999999999999999 9999999765543
No 450
>PRK06270 homoserine dehydrogenase; Provisional
Probab=28.12 E-value=2.7e+02 Score=26.79 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=38.5
Q ss_pred ChHHhhccCCcceeEe------ccC---cchHHHHHhhCCcEEe---ccccccchhhHHHHHHhhcceEEEe
Q 047833 341 PQVEILSHRSVSVFLS------HCG---WNSVLEALSHGVPIIG---WPLAAEQFYNSKLLEEEIGVCVEVA 400 (473)
Q Consensus 341 p~~~ll~~~~v~~~I~------HGG---~gt~~eal~~GvP~l~---~P~~~DQ~~nA~~v~~~lG~g~~l~ 400 (473)
...+++..++++.||- |+| .--+.+|+.+|+++|+ -|+...-....+..++. |+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 5567776666655655 443 3456899999999999 47754444555555656 7766543
No 451
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=27.98 E-value=3.9e+02 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+||+++..|..+ ..|++++++ -|+.++++..+.+
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~-~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQ-SPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHh-CCCccEEEEECCC
Confidence 478888887664 468899999 8887777755443
No 452
>PRK06835 DNA replication protein DnaC; Validated
Probab=27.81 E-value=75 Score=30.46 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=36.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
..++|+..++.|-.+=..++|.+|.+ +|+.|.|++...+...+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHHHHHHHHH
Confidence 46777777788888888899999999 9999999997776555543
No 453
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=27.69 E-value=3.2e+02 Score=24.69 Aligned_cols=127 Identities=13% Similarity=-0.002 Sum_probs=61.3
Q ss_pred chhhHhhhhcCCCCCeEEEEeeCCccc-CCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChH
Q 047833 265 STELCKKWLDTKPYTSVLYVSFGSQNT-IATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQV 343 (473)
Q Consensus 265 ~~~~~~~~l~~~~~~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~ 343 (473)
..+++...+....=+++-+........ .++.....+.+.+++.+..+++-++... . ......+.+ ...=..
T Consensus 86 ~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~-~---~~~~~~~~~----~~~~~~ 157 (273)
T PF04909_consen 86 AVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTG-F---PDAPSDPAD----PEELEE 157 (273)
T ss_dssp HHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTH-H---HHHHHHHHH----HHHHTT
T ss_pred HHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccc-h---hhhhHHHHH----HHHHHH
Confidence 345666666443323333222211122 2333345899999999988887764100 0 000000000 000013
Q ss_pred HhhccCCcceeEeccCcc--hHHHHHhh--CCcEEeccc------------cccchhhHHHHHHhhcceEEEe
Q 047833 344 EILSHRSVSVFLSHCGWN--SVLEALSH--GVPIIGWPL------------AAEQFYNSKLLEEEIGVCVEVA 400 (473)
Q Consensus 344 ~ll~~~~v~~~I~HGG~g--t~~eal~~--GvP~l~~P~------------~~DQ~~nA~~v~~~lG~g~~l~ 400 (473)
.+.++|+++.++.|+|.. ...+++.. ..|.|.+-. ..+.+.....+... |.-..+-
T Consensus 158 ~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~-g~drilf 229 (273)
T PF04909_consen 158 LLERFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEF-GPDRILF 229 (273)
T ss_dssp HHHHSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHH-TGGGEEE
T ss_pred HHHHhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHh-CCceEEe
Confidence 345689999999999999 44443222 345454322 23444555555544 7655444
No 454
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=27.53 E-value=4.2e+02 Score=23.22 Aligned_cols=146 Identities=15% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEec
Q 047833 278 YTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSH 357 (473)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~H 357 (473)
++.++.|+.|.++. ..+..|...+.++.++.... ...-........+.......+...+..++ ++|.-
T Consensus 10 ~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs~~~---~~~l~~l~~~~~i~~~~~~~~~~~l~~ad--lViaa 77 (202)
T PRK06718 10 NKRVVIVGGGKVAG-------RRAITLLKYGAHIVVISPEL---TENLVKLVEEGKIRWKQKEFEPSDIVDAF--LVIAA 77 (202)
T ss_pred CCEEEEECCCHHHH-------HHHHHHHHCCCeEEEEcCCC---CHHHHHHHhCCCEEEEecCCChhhcCCce--EEEEc
Confidence 46688887776652 34455666777777665321 11101111112344434434445566666 47776
Q ss_pred cCcchHHHHHh----hCCcEEeccccccchhhHH-----HHHHhhcceEEEecC-CCCccCHHHHHHHHHHHHcCChhhH
Q 047833 358 CGWNSVLEALS----HGVPIIGWPLAAEQFYNSK-----LLEEEIGVCVEVARG-KSSEVLKKDIAAKIELVMNETEKGI 427 (473)
Q Consensus 358 GG~gt~~eal~----~GvP~l~~P~~~DQ~~nA~-----~v~~~lG~g~~l~~~-~~~~~~~~~l~~~i~~ll~~~~~~~ 427 (473)
-+.-.+.+.++ .++++-+ .|.+..+. .+.+- ++-+.+..+ ++.. -+..|++.|++++.. .-+
T Consensus 78 T~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~-la~~lr~~ie~~~~~--~~~ 149 (202)
T PRK06718 78 TNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPK-LAKKIRDELEALYDE--SYE 149 (202)
T ss_pred CCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChH-HHHHHHHHHHHHcch--hHH
Confidence 66655555443 4555433 34433332 23323 444444442 2233 335688888887743 233
Q ss_pred HHHHHHHHHHHHHHHh
Q 047833 428 ELRKNAYEVREIIKNA 443 (473)
Q Consensus 428 ~~~~~a~~l~~~~~~~ 443 (473)
.+-+.+.++++.+++.
T Consensus 150 ~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 150 SYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5777777777777654
No 455
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.43 E-value=1.5e+02 Score=21.79 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=36.1
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHhCCCcEEEEEcC-CcchhhhhccCCCCCCceEEecC
Q 047833 6 ETIVLFPFMAQ--GHIIPFLALALHLEKTNKYTITFVNT-PLNLRKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 6 ~~il~~~~~~~--GH~~p~l~La~~L~~~rGh~Vt~~~~-~~~~~~v~~~~~~~~~~~~~~~~ 65 (473)
-+++++|.... .+..-...++..|++ .|..|.+-.. ......+..+.. .++.|.-+-
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~~~l~k~i~~a~~--~g~~~~iii 61 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRNERPGVKFADADL--IGIPYRIVV 61 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCCCCcccchhHHHh--cCCCEEEEE
Confidence 36788887643 466678899999999 9999988543 233333333222 566665544
No 456
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=27.11 E-value=1e+02 Score=29.49 Aligned_cols=33 Identities=18% Similarity=-0.001 Sum_probs=23.1
Q ss_pred CccEEEECCCcc--hHHHHHHHhCCceEEEecchH
Q 047833 117 KPLCIITDMFFG--WCKEIAQEYGIFHAIFIGGGG 149 (473)
Q Consensus 117 ~pD~Vv~d~~~~--~~~~~A~~~giP~v~~~~~~~ 149 (473)
.||+||.-.-.- .+..=|.++|||+|.+.-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 588866653222 556778899999999865543
No 457
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=27.10 E-value=3.1e+02 Score=25.82 Aligned_cols=111 Identities=12% Similarity=0.030 Sum_probs=59.1
Q ss_pred eEEecccCCCccCCCCCCCCCCCchhhHhhhhcCCCCCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCC
Q 047833 242 VWPIGPVLLSTENRGGAGKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGF 321 (473)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 321 (473)
-+|+|....++.. ......++.....+..-+++-+-............+..+.+++++.|..+++-+|..
T Consensus 98 drf~~~~~v~p~~-------~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~--- 167 (293)
T COG2159 98 DRFVGFARVDPRD-------PEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG--- 167 (293)
T ss_pred cceeeeeeeCCCc-------hHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC---
Confidence 3466666655510 011234555555543223233223333333445557889999999999999988643
Q ss_pred CccccccccCCcEEEecccChHHhhccCCcceeEeccC--cchHHHH
Q 047833 322 DINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSHCG--WNSVLEA 366 (473)
Q Consensus 322 ~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~HGG--~gt~~ea 366 (473)
+........ ...+..=....-.+|+++.++.|.| ..=..|+
T Consensus 168 -~~~~~~~~~---~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 168 -PGGAGLEKG---HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred -CCCcccccC---CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 111000000 0111222445566889999999999 5444444
No 458
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=27.00 E-value=1.4e+02 Score=20.93 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=28.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhh
Q 047833 414 AKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMVK 469 (473)
Q Consensus 414 ~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (473)
-.|-+|++|+ ++.+.|. +.|+ .+.|-...-+|++-.+|+.|-
T Consensus 38 lLitRLmnne----eIsEeaQ---~EMA-------~eAgi~~~rID~IA~fLNqWG 79 (81)
T PF10820_consen 38 LLITRLMNNE----EISEEAQ---QEMA-------SEAGIDEQRIDDIANFLNQWG 79 (81)
T ss_pred HHHHHHhccH----hhhHHHH---HHHH-------HHcCCcHHHHHHHHHHHHHhc
Confidence 3467888888 6666654 3444 445667788999999888763
No 459
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=26.80 E-value=4.3e+02 Score=27.44 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=30.1
Q ss_pred HHHHHHHhHhhhcCCCCccEEE----ECCCcchHHHHHHHhCCceEEEecchH
Q 047833 101 HFKKLVNDLIDEQNGYKPLCII----TDMFFGWCKEIAQEYGIFHAIFIGGGG 149 (473)
Q Consensus 101 ~~~~~l~~~~~~~~~~~pD~Vv----~d~~~~~~~~~A~~~giP~v~~~~~~~ 149 (473)
.+...+... .+|.+| ||-.++..++++-.++||.|.++..|-
T Consensus 111 s~e~~~~~~-------~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM 156 (575)
T COG0129 111 SVEEVLSAH-------PFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPM 156 (575)
T ss_pred HHHHHHhcc-------CcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcC
Confidence 334455555 678776 566777777888899999999876543
No 460
>PLN00016 RNA-binding protein; Provisional
Probab=26.73 E-value=73 Score=31.14 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=25.6
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPF--MAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~--~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+++|+++.. |+.|.+ -..|++.|.+ +||+|+.++-..
T Consensus 51 ~~~~VLVt~~~~GatG~i--G~~lv~~L~~-~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFI--GFYLAKELVK-AGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeE--hHHHHHHHHH-CCCEEEEEecCC
Confidence 4567877611 333443 3567889999 999999987543
No 461
>PLN02285 methionyl-tRNA formyltransferase
Probab=26.66 E-value=1.1e+02 Score=29.50 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHhHhhhcCCCCccEEEECCCcc-hHHHHHHHhCCceEEEecc
Q 047833 102 FKKLVNDLIDEQNGYKPLCIITDMFFG-WCKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 102 ~~~~l~~~~~~~~~~~pD~Vv~d~~~~-~~~~~A~~~giP~v~~~~~ 147 (473)
+.+.++++ +||++|+-.+.. -...+-+....-++.++++
T Consensus 85 ~~~~l~~~-------~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpS 124 (334)
T PLN02285 85 FLSALREL-------QPDLCITAAYGNILPQKFLDIPKLGTVNIHPS 124 (334)
T ss_pred HHHHHHhh-------CCCEEEhhHhhhhcCHHHHhhccCCEEEEecc
Confidence 34557777 899999875533 1223334444556777654
No 462
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=26.50 E-value=1.4e+02 Score=25.98 Aligned_cols=38 Identities=8% Similarity=0.264 Sum_probs=28.6
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 6 ETIVLFPF-MAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 6 ~~il~~~~-~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
..|++.+. ++.|=-.-...||..|++ +|++|.++=...
T Consensus 18 kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~ 56 (204)
T TIGR01007 18 KVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDM 56 (204)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 34444433 567888889999999999 999999985443
No 463
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=26.50 E-value=4.8e+02 Score=23.86 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEecCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhhHHH
Q 047833 23 LALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLEIPFDSIDHNLPPCTENTDSVPYHLVSKLIEATLSFKPHF 102 (473)
Q Consensus 23 l~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (473)
-.+++.|.+ . -+|.+.+.......+...... ..+-+..+|.+....+++...--...-+. ..+.=
T Consensus 118 ~~a~~~l~~-~-~~vllttGsk~l~~f~~~~~~-~r~~~RvLP~~~s~~g~~~~~iiam~gPf------------s~e~n 182 (248)
T PRK08057 118 EEAAEALAP-F-RRVLLTTGRQPLAHFAAILPE-HRLLVRVLPPPEVLLGLPRAEIIALRGPF------------SLELE 182 (248)
T ss_pred HHHHHHhhc-c-CCEEEecCcchHHHHhhcCCC-CEEEEEECCCchhcCCCChhhEEEeeCCC------------CHHHH
Confidence 345666655 5 567777777666665542211 45566667754222222211000000011 11222
Q ss_pred HHHHHhHhhhcCCCCccEEEECCCcc----hHHHHHHHhCCceEEEe
Q 047833 103 KKLVNDLIDEQNGYKPLCIITDMFFG----WCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 103 ~~~l~~~~~~~~~~~pD~Vv~d~~~~----~~~~~A~~~giP~v~~~ 145 (473)
.++++++ +.|+||+=...- .-..+|+.+|||++.+.
T Consensus 183 ~aL~~~~-------~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 222 (248)
T PRK08057 183 RALLRQH-------RIDVVVTKNSGGAGTEAKLEAARELGIPVVMIA 222 (248)
T ss_pred HHHHHHc-------CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 5678888 999999864332 22379999999999984
No 464
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=26.49 E-value=4.5e+02 Score=23.12 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=33.1
Q ss_pred CCcEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 4 RKETIVLFPFM-AQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 4 ~~~~il~~~~~-~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+|.++-|+.++ .-|-..-+|+-++.... +|-.|.++++.-.
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD 43 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAID 43 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 35677666665 56999999999999999 9999999986553
No 465
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.44 E-value=99 Score=29.22 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+..+.++++.++.| --+.||.+++. .||+||+.+-+.
T Consensus 31 k~~~hi~itggS~g---lgl~la~e~~~-~ga~Vti~ar~~ 67 (331)
T KOG1210|consen 31 KPRRHILITGGSSG---LGLALALECKR-EGADVTITARSG 67 (331)
T ss_pred CccceEEEecCcch---hhHHHHHHHHH-ccCceEEEeccH
Confidence 33356666667666 35789999999 999999987544
No 466
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=26.29 E-value=4.6e+02 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=34.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNL 46 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~ 46 (473)
..|.+...++-|--.-+-.|+..|.+ +|+.|.+++..+..
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~-~g~~v~vi~~Dp~s 96 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSS 96 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCc
Confidence 34568888899999999999999999 99999999987743
No 467
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.28 E-value=1e+02 Score=27.48 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=22.7
Q ss_pred CccEEEECCCc--chHHHHHHHhCCceEEEecch
Q 047833 117 KPLCIITDMFF--GWCKEIAQEYGIFHAIFIGGG 148 (473)
Q Consensus 117 ~pD~Vv~d~~~--~~~~~~A~~~giP~v~~~~~~ 148 (473)
+||+||..... .....-....++|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 89999998776 344566677899999986543
No 468
>PRK07454 short chain dehydrogenase; Provisional
Probab=26.25 E-value=1.3e+02 Score=26.95 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~ 43 (473)
|+..++|.++++.+ .|.+ -..|++.|.+ +|++|+++.-.
T Consensus 1 ~~~~~~k~vlItG~-sg~i--G~~la~~l~~-~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALITGA-SSGI--GKATALAFAK-AGWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEeCC-CchH--HHHHHHHHHH-CCCEEEEEeCC
Confidence 55555555666543 3433 4678999999 99999998743
No 469
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=26.20 E-value=2e+02 Score=26.31 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=43.4
Q ss_pred ceEEEecCCCCccCHHHHHHHHHHHHcCCh---hhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhh
Q 047833 395 VCVEVARGKSSEVLKKDIAAKIELVMNETE---KGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMV 468 (473)
Q Consensus 395 ~g~~l~~~~~~~~~~~~l~~~i~~ll~~~~---~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (473)
.|+.+.. ..++.+.-.+.|+..+.... .-+.++++|.+|+..- ||.|.|...+|++++.+.
T Consensus 185 FGL~l~F---~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r----------g~RSGRtA~QF~~~l~g~ 248 (249)
T PF05673_consen 185 FGLWLSF---YPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR----------GGRSGRTARQFIDDLAGR 248 (249)
T ss_pred CCcEEEe---cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHhcC
Confidence 3445544 56888888888888884110 1136888888887654 777899999999988653
No 470
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.10 E-value=1e+02 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch--hhhhccCCCCCCceEEecC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNL--RKLKSSVPQNSSINLLEIP 65 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 65 (473)
..+|+++.+|++||.+ |.-|++ .|.+|++...+... +..++ .|++.-.+.
T Consensus 18 gK~iaIIGYGsQG~ah-----alNLRD-SGlnViiGlr~g~~s~~kA~~-----dGf~V~~v~ 69 (338)
T COG0059 18 GKKVAIIGYGSQGHAQ-----ALNLRD-SGLNVIIGLRKGSSSWKKAKE-----DGFKVYTVE 69 (338)
T ss_pred CCeEEEEecChHHHHH-----Hhhhhh-cCCcEEEEecCCchhHHHHHh-----cCCEeecHH
Confidence 3589999999999977 567899 99999998866644 34444 566655444
No 471
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=26.08 E-value=1.5e+02 Score=23.69 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=27.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 047833 9 VLFPFMAQGHIIPFLALALHLEKTNKYTITFVNT 42 (473)
Q Consensus 9 l~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~ 42 (473)
+++..|..++-.-+..+++.|.+ +|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~-~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAE-QGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHH-TTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-CCCEEEEEec
Confidence 56666777777889999999999 9999999853
No 472
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=26.03 E-value=1.1e+02 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVN 41 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~ 41 (473)
+..+++++++|+. +...+..++.|.+ .|.+++++.
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~-~Gi~~~vi~ 42 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEE-EGIKAGVID 42 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHH-cCCceeEEe
Confidence 3567889988866 5677999999999 999999875
No 473
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.02 E-value=1.3e+02 Score=27.84 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=28.1
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 2 AQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+.+.+-+++++.|.| =-..+|+.|++ +||+|+++.-..
T Consensus 2 ~~~~~~~~lITGASsG---IG~~~A~~lA~-~g~~liLvaR~~ 40 (265)
T COG0300 2 GPMKGKTALITGASSG---IGAELAKQLAR-RGYNLILVARRE 40 (265)
T ss_pred CCCCCcEEEEECCCch---HHHHHHHHHHH-CCCEEEEEeCcH
Confidence 3445566667766555 24688999999 999999997444
No 474
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.98 E-value=1.3e+02 Score=25.83 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCeEEEEeeCCcccCCHHHHHHHHHHHHhCCCceEEEECCCCCCCccccccccCCcEEEecccChHHhhccCCcceeEec
Q 047833 278 YTSVLYVSFGSQNTIATSQMMQLAMALEASGKNFIWVVRPPIGFDINSEIKCSGQGLVVHKWAPQVEILSHRSVSVFLSH 357 (473)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~v~~~I~H 357 (473)
++.+-.+.+|.++. .+++.+...|.+++....+.. .........+ .+.+-+++++.+++ ++.|
T Consensus 36 g~tvgIiG~G~IG~-------~vA~~l~~fG~~V~~~d~~~~-----~~~~~~~~~~---~~~~l~ell~~aDi--v~~~ 98 (178)
T PF02826_consen 36 GKTVGIIGYGRIGR-------AVARRLKAFGMRVIGYDRSPK-----PEEGADEFGV---EYVSLDELLAQADI--VSLH 98 (178)
T ss_dssp TSEEEEESTSHHHH-------HHHHHHHHTT-EEEEEESSCH-----HHHHHHHTTE---EESSHHHHHHH-SE--EEE-
T ss_pred CCEEEEEEEcCCcC-------eEeeeeecCCceeEEecccCC-----hhhhcccccc---eeeehhhhcchhhh--hhhh
Confidence 46688888888773 456666778899888876441 0000001122 56688899999885 5555
Q ss_pred cCcchHHHHHhhCCcEEecccc--ccchhhHHHHHHhhcce-EEEecCCCCccCHHHHHHHHH
Q 047833 358 CGWNSVLEALSHGVPIIGWPLA--AEQFYNSKLLEEEIGVC-VEVARGKSSEVLKKDIAAKIE 417 (473)
Q Consensus 358 GG~gt~~eal~~GvP~l~~P~~--~DQ~~nA~~v~~~lG~g-~~l~~~~~~~~~~~~l~~~i~ 417 (473)
+|.. ..+..|+..+..+ +=| +-++.++..-++++.|.++++
T Consensus 99 ------------------~plt~~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 99 ------------------LPLTPETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp ------------------SSSSTTTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred ------------------hccccccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHHh
Confidence 5553 3677888888855 644 455555567777777777665
No 475
>PRK13236 nitrogenase reductase; Reviewed
Probab=25.95 E-value=1.3e+02 Score=28.33 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=33.3
Q ss_pred CCCCCcEEE-EEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 1 MAQRKETIV-LFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 1 ~~~~~~~il-~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
|....+|++ |..=|+-|--+-.+.||..|++ +|++|.++-...
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~-~G~rVLliD~D~ 44 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAE-MGQRILIVGCDP 44 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHH-CCCcEEEEEccC
Confidence 444444555 5555788999999999999999 999999985333
No 476
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.91 E-value=1.1e+02 Score=27.97 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=20.3
Q ss_pred CccEEEECCCcch---HHHHHHHhCCceEEEec
Q 047833 117 KPLCIITDMFFGW---CKEIAQEYGIFHAIFIG 146 (473)
Q Consensus 117 ~pD~Vv~d~~~~~---~~~~A~~~giP~v~~~~ 146 (473)
+||+||....... ...+.+..|+|++.+..
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 8999998755332 12344458999998754
No 477
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.90 E-value=93 Score=31.50 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+.||++...|+.+ .+=...|.+.|++ +||+|.++.++.....+..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k-~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKE-RGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHh-CcCEEEEEECcCHHHHhhH
Confidence 4578777666544 4478899999999 9999999999987776654
No 478
>PRK08265 short chain dehydrogenase; Provisional
Probab=25.87 E-value=1.2e+02 Score=27.61 Aligned_cols=39 Identities=15% Similarity=-0.030 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 047833 1 MAQRKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~ 43 (473)
|..-+.+.++++.++.| --.++|+.|.+ +|++|++..-.
T Consensus 1 m~~~~~k~vlItGas~g---IG~~ia~~l~~-~G~~V~~~~r~ 39 (261)
T PRK08265 1 MIGLAGKVAIVTGGATL---IGAAVARALVA-AGARVAIVDID 39 (261)
T ss_pred CCCCCCCEEEEECCCCh---HHHHHHHHHHH-CCCEEEEEeCC
Confidence 54333456667765543 45788999999 99999888643
No 479
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.87 E-value=1.3e+02 Score=24.06 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=25.6
Q ss_pred eEEEEeeCCcccCCHHHHHHHHHHHHh--CCCceEEEE
Q 047833 280 SVLYVSFGSQNTIATSQMMQLAMALEA--SGKNFIWVV 315 (473)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~ 315 (473)
.++++++||......+.+..+.+.+++ .+..+-|..
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 589999999987556677777777764 344555554
No 480
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=25.84 E-value=99 Score=27.92 Aligned_cols=43 Identities=9% Similarity=-0.093 Sum_probs=34.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 047833 6 ETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKL 49 (473)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.-+++...|+.|--.-.+.++.+-.+ +|..+.|++.+...+.+
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQV 64 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHH
Confidence 34667777889999988888777668 89999999988765544
No 481
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=25.81 E-value=2.7e+02 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 20 IPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 20 ~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
...+.+++.|.+ .|++|..++.+.
T Consensus 11 ~r~~~~~~~l~~-~g~~v~~~g~~~ 34 (287)
T TIGR02853 11 ARQLELIRKLEE-LDAKISLIGFDQ 34 (287)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeccc
Confidence 357889999999 999999998763
No 482
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=25.79 E-value=1.2e+02 Score=28.50 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=32.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 7 TIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 7 ~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
||+++.=|+.|-..-.+.||.+|.+ +|++|.++=..+
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~-~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeccC
Confidence 5888888999999999999999999 999999986444
No 483
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.78 E-value=5.1e+02 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCC--ccC----HHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPFMA--QGH----IIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~~~--~GH----~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+..|||++..|. .|+ =+.-..++++|++ .||+|+++...+
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke-~G~~vi~v~~np 50 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKE-EGYRVILVNSNP 50 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHH-cCCEEEEEecch
Confidence 456888887764 342 3567789999999 999999997665
No 484
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.76 E-value=83 Score=21.96 Aligned_cols=19 Identities=37% Similarity=0.357 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCcEEEEEc
Q 047833 22 FLALALHLEKTNKYTITFVN 41 (473)
Q Consensus 22 ~l~La~~L~~~rGh~Vt~~~ 41 (473)
-+..|..|++ +|++|+++=
T Consensus 8 Gl~aA~~L~~-~g~~v~v~E 26 (68)
T PF13450_consen 8 GLAAAYYLAK-AGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHH-TTSEEEEEE
T ss_pred HHHHHHHHHH-CCCcEEEEe
Confidence 3678999999 999999984
No 485
>PRK09739 hypothetical protein; Provisional
Probab=25.72 E-value=1.6e+02 Score=25.69 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=22.3
Q ss_pred CcEEEEE-cCCCccCHHH--HHHHHHHHHhCCCcEEEEEc
Q 047833 5 KETIVLF-PFMAQGHIIP--FLALALHLEKTNKYTITFVN 41 (473)
Q Consensus 5 ~~~il~~-~~~~~GH~~p--~l~La~~L~~~rGh~Vt~~~ 41 (473)
|+||+++ ++|-.+-.+- .-.+++.|.+ .||+|+++-
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~-~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQE-RGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 5678755 4454333222 3355677888 899998764
No 486
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=25.35 E-value=71 Score=31.81 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.3
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEE
Q 047833 117 KPLCIITDMFFGWCKEIAQEYGIFHAIF 144 (473)
Q Consensus 117 ~pD~Vv~d~~~~~~~~~A~~~giP~v~~ 144 (473)
+||+||.... ...+|+++|||++.+
T Consensus 358 ~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCc---cchhhhhcCCCEEec
Confidence 8999999965 347899999999986
No 487
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=25.35 E-value=1.5e+02 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=30.0
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 047833 9 VLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLN 45 (473)
Q Consensus 9 l~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~ 45 (473)
+++.+++.--++|..-++....+ .|++|+++.+---
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A-~G~EV~VF~TfwG 42 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAA-MGYEVTVFFTFWG 42 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeHHH
Confidence 45566788899999999999999 9999999876443
No 488
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=25.27 E-value=4.4e+02 Score=22.69 Aligned_cols=52 Identities=27% Similarity=0.225 Sum_probs=33.9
Q ss_pred CCcEEeccc----cccc---hhhHHHHHHhhcceEEEec---------CCCCccCHHHHHHHHHHHHcC
Q 047833 370 GVPIIGWPL----AAEQ---FYNSKLLEEEIGVCVEVAR---------GKSSEVLKKDIAAKIELVMNE 422 (473)
Q Consensus 370 GvP~l~~P~----~~DQ---~~nA~~v~~~lG~g~~l~~---------~~~~~~~~~~l~~~i~~ll~~ 422 (473)
++|++++|- .+.. ..|-.++.+. |+=+.-+. |..+-.+.++|.+.|.+.+..
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 899999995 3343 5667777755 76655443 123345668888888776653
No 489
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.24 E-value=1.4e+02 Score=28.32 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
+++||.|+..|..| .++|+.|.+ .||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~-~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASA-NGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHH-CCCEEEEEeCCC
Confidence 45689999887666 478999999 999999987543
No 490
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=24.97 E-value=60 Score=26.67 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=27.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhc
Q 047833 8 IVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTPLNLRKLKS 51 (473)
Q Consensus 8 il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|+++..|+.| .-+|..|.+ .||+|++++.....+.+.+
T Consensus 1 I~I~G~GaiG-----~~~a~~L~~-~g~~V~l~~r~~~~~~~~~ 38 (151)
T PF02558_consen 1 ILIIGAGAIG-----SLYAARLAQ-AGHDVTLVSRSPRLEAIKE 38 (151)
T ss_dssp EEEESTSHHH-----HHHHHHHHH-TTCEEEEEESHHHHHHHHH
T ss_pred CEEECcCHHH-----HHHHHHHHH-CCCceEEEEccccHHhhhh
Confidence 3444445444 347899999 9999999998884455666
No 491
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=24.90 E-value=1.2e+02 Score=26.90 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhHhhhcCCCCccEEEECCCcc-------hHHHHHHHhCCceEEEe
Q 047833 98 FKPHFKKLVNDLIDEQNGYKPLCIITDMFFG-------WCKEIAQEYGIFHAIFI 145 (473)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~-------~~~~~A~~~giP~v~~~ 145 (473)
..+.+.++++++.. +||+|++|.... .|..++-.+++|+|-+.
T Consensus 75 E~P~~l~~l~~l~~-----~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 75 ELPCILEALEKLKN-----KPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp THHHHHHHHHTSSS-------SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred hHHHHHHHHHHhcc-----cCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 44666777777643 689999995443 24467888999999974
No 492
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=24.86 E-value=1.1e+02 Score=23.13 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEcCCCcc--CH--HHHHHHHHHHHhCCCcEEE
Q 047833 10 LFPFMAQG--HI--IPFLALALHLEKTNKYTIT 38 (473)
Q Consensus 10 ~~~~~~~G--H~--~p~l~La~~L~~~rGh~Vt 38 (473)
+++.|-.| +. .-+-..++.|++ .||.|.
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~-~G~~vv 33 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRA-KGYEVV 33 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHH-CCCEEe
Confidence 44555555 44 347789999999 998876
No 493
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=24.77 E-value=1.6e+02 Score=26.34 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=26.3
Q ss_pred cEEEEEcCC----CccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 6 ETIVLFPFM----AQGHIIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 6 ~~il~~~~~----~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.||+++..+ ......=++.--..|++ .|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~-aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDR-AGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 367655531 12345556777889999 999999999754
No 494
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=24.74 E-value=6.5e+02 Score=24.57 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHH-HHh-CCCceEEEECCCCCCCccc--cccccCCcEEEecccChHH---hhccCCcceeEeccC----c
Q 047833 292 IATSQMMQLAMA-LEA-SGKNFIWVVRPPIGFDINS--EIKCSGQGLVVHKWAPQVE---ILSHRSVSVFLSHCG----W 360 (473)
Q Consensus 292 ~~~~~~~~~~~a-l~~-~~~~~i~~~~~~~~~~~~~--~~~~~~~nv~~~~~vp~~~---ll~~~~v~~~I~HGG----~ 360 (473)
..-+.+.+++.- |.+ .+.+||+.-..+...+.++ +.....+.+.+.+-+|++. +|...++ |++-.= .
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc 285 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFC 285 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHH
Confidence 456777776644 443 5678887764432122233 2334557788889998765 3444443 444321 2
Q ss_pred chHHHHHhhCCcEEec
Q 047833 361 NSVLEALSHGVPIIGW 376 (473)
Q Consensus 361 gt~~eal~~GvP~l~~ 376 (473)
-++.||..+|.|+|..
T Consensus 286 ~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 286 MVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 3678999999999975
No 495
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=24.64 E-value=68 Score=29.85 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCcEEEEEcCCcchhhhhccCCCCCCceEEe
Q 047833 24 ALALHLEKTNKYTITFVNTPLNLRKLKSSVPQNSSINLLE 63 (473)
Q Consensus 24 ~La~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ 63 (473)
.+|..|.+ .||+|++++-....+.+.+ .++.+..
T Consensus 5 ~~a~~L~~-~G~~V~l~~r~~~~~~i~~-----~Gl~i~~ 38 (293)
T TIGR00745 5 LYGAYLAR-AGHDVTLLARGEQLEALNQ-----EGLRIVS 38 (293)
T ss_pred HHHHHHHh-CCCcEEEEecHHHHHHHHH-----CCcEEEe
Confidence 47889999 9999999987644555655 5655543
No 496
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.47 E-value=1.2e+02 Score=24.28 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=24.3
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 047833 15 AQGHIIPFLALALHLEKTNKYTITFVNTPLNLRK 48 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
..--+.-.+-+...|.+ +|.+|++.+++.....
T Consensus 14 iP~qissaiYls~klkk-kgf~v~VaateAa~kL 46 (148)
T COG4081 14 IPPQISSAIYLSHKLKK-KGFDVTVAATEAALKL 46 (148)
T ss_pred CCccchHHHHHHHHhhc-cCccEEEecCHhhhee
Confidence 33445556778889999 9999999987664333
No 497
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.34 E-value=3.6e+02 Score=30.74 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCc--cC----HHHHHHHHHHHHhCCCcEEEEEcCCc
Q 047833 4 RKETIVLFPFMAQ--GH----IIPFLALALHLEKTNKYTITFVNTPL 44 (473)
Q Consensus 4 ~~~~il~~~~~~~--GH----~~p~l~La~~L~~~rGh~Vt~~~~~~ 44 (473)
.+.||+++..|.. |. -+-.++++++|++ .|++|.++...+
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~-~G~~vi~v~~np 598 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALRE-AGYETIMVNCNP 598 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHH-CCCEEEEEeCCc
Confidence 3568888887653 32 3456788999999 999999986544
No 498
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=24.32 E-value=1.7e+02 Score=21.77 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=38.0
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhh
Q 047833 404 SSEVLKKDIAAKIELVMNETEKGIELRKNAYEVREIIKNAFKNEENFQGSSVKAMNQFLNAASMVK 469 (473)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (473)
...++.++|+..+.+-|.+. +... ..+.+.++.. ..+|......++|+..+.+..
T Consensus 23 ~g~i~~~ELk~ll~~elg~~-----ls~~-~~v~~mi~~~-----D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 23 KESLTASEFQELLTQQLPHL-----LKDV-EGLEEKMKNL-----DVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred CCeECHHHHHHHHHHHhhhh-----ccCH-HHHHHHHHHh-----CCCCCCCCcHHHHHHHHHHHH
Confidence 46789999988888744332 3221 5677777666 556667899999998877654
No 499
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=24.30 E-value=1.3e+02 Score=27.87 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 047833 5 KETIVLFPFMAQGHIIPFLALALHLEKTNKYTITFVNTP 43 (473)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~La~~L~~~rGh~Vt~~~~~ 43 (473)
|.+|+|+.=|+-|-..-.+.||.+|++ +|++|.++=-.
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~-~G~rVLliD~D 38 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAE-SGKKVLVVGCD 38 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-CCCEEEEEeeC
Confidence 347888866899999999999999999 99999998433
No 500
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=24.26 E-value=2.1e+02 Score=24.04 Aligned_cols=46 Identities=7% Similarity=0.007 Sum_probs=32.9
Q ss_pred HHhhhHHHHHHHHhHhhhcCCCCccEEEECCCcch---------------HHHHHHHhCCceEEEecc
Q 047833 95 TLSFKPHFKKLVNDLIDEQNGYKPLCIITDMFFGW---------------CKEIAQEYGIFHAIFIGG 147 (473)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~pD~Vv~d~~~~~---------------~~~~A~~~giP~v~~~~~ 147 (473)
+....+.+.+++++. +||.+..+..++. ...++...|+|..-+.|.
T Consensus 42 L~~I~~~l~~~i~~y-------~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~ 102 (156)
T TIGR00228 42 LKLIYAGVTEIITQF-------QPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAAR 102 (156)
T ss_pred HHHHHHHHHHHHHHh-------CCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 345567778999999 9999888855442 235677788888886543
Done!