BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047834
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
          Length = 390

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 193 LLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229
           L + + +++ LP   FQ++P L VL   RN DL+ LP
Sbjct: 98  LYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLP 133


>pdb|4AV2|A Chain A, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|B Chain B, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|C Chain C, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|D Chain D, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|E Chain E, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|F Chain F, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|G Chain G, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|H Chain H, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|I Chain I, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|J Chain J, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|K Chain K, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis.
 pdb|4AV2|L Chain L, Single Particle Electron Microscopy Of Pilq Dodecameric
           Complexes From Neisseria Meningitidis
          Length = 745

 Score = 28.9 bits (63), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 144 LWIASQDKGNKILASKPENGKLIIDQQSVTWNKAV 178
           L I +++ G  I+AS   NGK+ +  + V W++A+
Sbjct: 337 LQILAKESGMNIVASDSVNGKMTLSLKDVPWDQAL 371


>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
          Length = 597

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 193 LLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229
           L + + +++ LP   FQ++P L VL   RN DL+ LP
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLP 139


>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
           Archaeoglobus Fulgidus
 pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
           Archaeoglobus Fulgidus
 pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
           Archaeoglobus Fulgidus
 pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
           Archaeoglobus Fulgidus
          Length = 371

 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 2   SQSY-SASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMG 56
           S+ Y +  V    C +   T+IT+ ++   +R     W+  V + + + AE   +G
Sbjct: 234 SEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG 289


>pdb|4AR0|A Chain A, N0 Domain Of Neisseria Meningitidis Pilus Assembly Protein
           Pilq
          Length = 128

 Score = 26.9 bits (58), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 144 LWIASQDKGNKILASKPENGKLIIDQQSVTWNKAV 178
           L I +++ G  I+AS   NGK+ +  + V W++A+
Sbjct: 47  LQILAKESGMNIVASDSVNGKMTLSLKDVPWDQAL 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,806,553
Number of Sequences: 62578
Number of extensions: 256947
Number of successful extensions: 518
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 5
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)