Query 047834
Match_columns 232
No_of_seqs 188 out of 1337
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.5E-46 1.2E-50 347.0 14.3 226 3-232 341-614 (889)
2 PLN03210 Resistant to P. syrin 99.9 3E-27 6.6E-32 229.6 14.5 126 3-150 374-505 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.8 3.2E-20 6.9E-25 155.3 4.1 103 4-108 182-284 (287)
4 PF12799 LRR_4: Leucine Rich r 98.7 1.8E-08 3.9E-13 59.9 3.1 41 188-230 1-41 (44)
5 PF13855 LRR_8: Leucine rich r 98.2 7.6E-07 1.6E-11 56.8 1.2 39 184-222 21-59 (61)
6 PF13855 LRR_8: Leucine rich r 97.9 8.1E-06 1.8E-10 51.9 2.9 43 188-231 1-43 (61)
7 PF00560 LRR_1: Leucine Rich R 97.2 0.0001 2.2E-09 36.8 0.1 19 213-232 1-19 (22)
8 KOG0472 Leucine-rich repeat pr 97.1 0.00026 5.7E-09 61.1 2.2 47 184-232 248-294 (565)
9 PF13504 LRR_7: Leucine rich r 97.1 0.00028 6.2E-09 32.8 1.2 17 212-229 1-17 (17)
10 PF00560 LRR_1: Leucine Rich R 97.0 0.00018 3.8E-09 35.9 0.2 22 189-211 1-22 (22)
11 KOG0617 Ras suppressor protein 97.0 0.00011 2.3E-09 56.6 -1.3 43 186-230 54-96 (264)
12 KOG4658 Apoptotic ATPase [Sign 96.9 0.00056 1.2E-08 65.7 3.0 45 188-232 545-591 (889)
13 PF14580 LRR_9: Leucine-rich r 96.8 0.0012 2.5E-08 51.4 3.5 44 184-228 60-103 (175)
14 KOG0618 Serine/threonine phosp 96.6 0.00046 9.9E-09 65.0 -0.6 48 184-232 379-426 (1081)
15 PLN03150 hypothetical protein; 96.6 0.0025 5.3E-08 59.3 4.2 44 185-230 463-508 (623)
16 PLN03210 Resistant to P. syrin 96.4 0.0077 1.7E-07 60.0 6.8 43 188-231 846-888 (1153)
17 PF13504 LRR_7: Leucine rich r 96.3 0.0026 5.7E-08 29.5 1.3 17 188-204 1-17 (17)
18 PLN03150 hypothetical protein; 96.3 0.0036 7.7E-08 58.3 3.4 46 184-231 438-485 (623)
19 KOG0472 Leucine-rich repeat pr 96.2 0.0025 5.4E-08 55.3 2.0 44 184-230 501-544 (565)
20 KOG0617 Ras suppressor protein 96.2 0.00086 1.9E-08 51.7 -1.0 47 184-232 146-192 (264)
21 PF14580 LRR_9: Leucine-rich r 95.8 0.009 1.9E-07 46.4 3.1 42 186-230 40-81 (175)
22 KOG0444 Cytoskeletal regulator 95.8 0.003 6.4E-08 57.8 0.4 46 186-232 124-169 (1255)
23 PLN00113 leucine-rich repeat r 95.7 0.013 2.9E-07 57.1 4.6 45 184-230 160-206 (968)
24 PLN00113 leucine-rich repeat r 95.6 0.015 3.3E-07 56.7 4.8 45 185-231 185-231 (968)
25 smart00370 LRR Leucine-rich re 95.5 0.0088 1.9E-07 30.8 1.6 18 212-230 2-19 (26)
26 smart00369 LRR_TYP Leucine-ric 95.5 0.0088 1.9E-07 30.8 1.6 18 212-230 2-19 (26)
27 PRK15370 E3 ubiquitin-protein 95.4 0.036 7.8E-07 52.6 6.4 39 189-231 242-280 (754)
28 KOG0444 Cytoskeletal regulator 95.4 0.0062 1.4E-07 55.8 1.1 46 184-231 99-144 (1255)
29 PRK04841 transcriptional regul 94.6 0.23 5.1E-06 48.1 9.6 116 5-147 206-332 (903)
30 smart00369 LRR_TYP Leucine-ric 94.5 0.037 7.9E-07 28.4 2.2 22 187-208 1-22 (26)
31 smart00370 LRR Leucine-rich re 94.5 0.037 7.9E-07 28.4 2.2 22 187-208 1-22 (26)
32 KOG3665 ZYG-1-like serine/thre 94.5 0.024 5.1E-07 53.4 2.3 50 174-226 147-208 (699)
33 PRK15387 E3 ubiquitin-protein 94.0 0.11 2.5E-06 49.4 5.8 18 188-205 242-259 (788)
34 PF12799 LRR_4: Leucine Rich r 93.6 0.1 2.2E-06 30.6 3.1 22 184-205 20-41 (44)
35 PRK15370 E3 ubiquitin-protein 93.6 0.077 1.7E-06 50.5 3.8 40 188-231 220-259 (754)
36 PRK15386 type III secretion pr 93.5 0.061 1.3E-06 47.3 2.8 18 189-206 95-113 (426)
37 KOG4579 Leucine-rich repeat (L 92.9 0.026 5.6E-07 42.1 -0.2 43 186-230 75-117 (177)
38 KOG0618 Serine/threonine phosp 92.9 0.036 7.8E-07 52.8 0.5 46 184-231 87-132 (1081)
39 COG4886 Leucine-rich repeat (L 91.8 0.053 1.1E-06 47.3 0.2 40 189-230 141-180 (394)
40 KOG4579 Leucine-rich repeat (L 90.8 0.062 1.3E-06 40.2 -0.3 47 184-231 49-95 (177)
41 COG4886 Leucine-rich repeat (L 90.7 0.091 2E-06 45.9 0.6 46 184-231 159-204 (394)
42 PRK15386 type III secretion pr 90.6 0.3 6.4E-06 43.1 3.7 41 189-232 73-114 (426)
43 KOG0532 Leucine-rich repeat (L 90.5 0.14 2.9E-06 46.7 1.5 43 188-232 211-253 (722)
44 PRK15387 E3 ubiquitin-protein 89.6 0.2 4.2E-06 47.9 1.8 36 189-226 423-458 (788)
45 KOG1259 Nischarin, modulator o 89.5 0.12 2.6E-06 43.6 0.3 36 189-227 353-388 (490)
46 KOG0532 Leucine-rich repeat (L 89.4 0.096 2.1E-06 47.6 -0.3 40 189-230 144-183 (722)
47 KOG0531 Protein phosphatase 1, 89.2 0.16 3.5E-06 44.8 1.0 41 186-229 138-178 (414)
48 smart00364 LRR_BAC Leucine-ric 89.1 0.27 5.9E-06 25.4 1.4 17 213-230 3-19 (26)
49 KOG4237 Extracellular matrix p 88.9 0.29 6.2E-06 42.7 2.2 47 184-230 87-133 (498)
50 KOG0531 Protein phosphatase 1, 88.7 0.25 5.4E-06 43.7 1.8 43 185-230 115-157 (414)
51 KOG3665 ZYG-1-like serine/thre 88.7 0.3 6.4E-06 46.2 2.3 42 185-228 145-188 (699)
52 cd00116 LRR_RI Leucine-rich re 87.3 0.45 9.8E-06 39.8 2.5 16 186-201 219-234 (319)
53 KOG2739 Leucine-rich acidic nu 87.3 0.46 9.9E-06 39.0 2.3 42 184-228 87-131 (260)
54 smart00367 LRR_CC Leucine-rich 86.9 0.52 1.1E-05 24.1 1.6 15 212-226 2-16 (26)
55 KOG2739 Leucine-rich acidic nu 84.8 0.67 1.4E-05 38.0 2.1 42 184-227 61-105 (260)
56 KOG1259 Nischarin, modulator o 84.3 0.5 1.1E-05 40.0 1.2 34 187-222 306-339 (490)
57 KOG4194 Membrane glycoprotein 84.2 0.66 1.4E-05 42.7 2.0 43 184-227 388-430 (873)
58 KOG1909 Ran GTPase-activating 84.0 0.45 9.8E-06 40.7 0.8 41 184-226 209-254 (382)
59 KOG4194 Membrane glycoprotein 83.8 0.91 2E-05 41.8 2.7 42 184-226 193-234 (873)
60 cd00116 LRR_RI Leucine-rich re 83.1 0.89 1.9E-05 38.0 2.3 40 185-226 162-206 (319)
61 KOG3864 Uncharacterized conser 82.5 0.36 7.9E-06 38.2 -0.3 37 186-222 149-186 (221)
62 PF13516 LRR_6: Leucine Rich r 82.0 0.7 1.5E-05 22.9 0.8 13 212-225 2-14 (24)
63 KOG1859 Leucine-rich repeat pr 79.3 0.25 5.4E-06 46.4 -2.4 40 187-229 186-225 (1096)
64 KOG4237 Extracellular matrix p 79.0 0.46 1E-05 41.5 -0.8 35 192-227 71-105 (498)
65 KOG3864 Uncharacterized conser 77.4 1.1 2.5E-05 35.5 1.0 44 184-227 121-166 (221)
66 PF09150 Carot_N: Orange carot 76.8 22 0.00049 26.9 7.7 77 32-133 67-143 (159)
67 KOG1644 U2-associated snRNP A' 75.1 2.6 5.7E-05 33.6 2.5 43 184-227 60-102 (233)
68 smart00365 LRR_SD22 Leucine-ri 74.8 2.6 5.5E-05 21.7 1.6 17 211-228 1-17 (26)
69 PRK00080 ruvB Holliday junctio 73.6 1.7 3.8E-05 37.0 1.3 105 5-134 203-309 (328)
70 KOG3207 Beta-tubulin folding c 72.0 1.4 3E-05 39.0 0.3 38 188-227 246-285 (505)
71 KOG3207 Beta-tubulin folding c 71.3 0.93 2E-05 40.1 -0.9 42 184-226 168-210 (505)
72 KOG2120 SCF ubiquitin ligase, 70.6 1.8 3.9E-05 36.7 0.7 41 184-225 309-351 (419)
73 KOG2982 Uncharacterized conser 67.6 2.8 6E-05 35.6 1.2 45 171-222 83-131 (418)
74 smart00368 LRR_RI Leucine rich 65.2 5.6 0.00012 20.6 1.7 13 212-225 2-14 (28)
75 KOG4062 6-O-methylguanine-DNA 61.5 9.5 0.00021 29.0 2.9 25 1-30 107-131 (178)
76 KOG1909 Ran GTPase-activating 53.3 7.6 0.00016 33.5 1.4 39 184-222 237-280 (382)
77 KOG2123 Uncharacterized conser 49.8 5.1 0.00011 33.7 -0.2 41 184-227 37-77 (388)
78 KOG1859 Leucine-rich repeat pr 49.0 3 6.4E-05 39.6 -1.8 32 189-222 233-264 (1096)
79 PF07725 LRR_3: Leucine Rich R 45.7 10 0.00022 18.2 0.6 18 189-206 1-18 (20)
80 KOG1644 U2-associated snRNP A' 41.7 23 0.00049 28.5 2.3 41 187-230 41-81 (233)
81 KOG0473 Leucine-rich repeat pr 41.6 5.9 0.00013 32.5 -0.9 34 188-222 88-121 (326)
82 smart00446 LRRcap occurring C- 41.0 11 0.00024 19.4 0.4 16 207-222 8-23 (26)
83 KOG0473 Leucine-rich repeat pr 39.6 0.99 2.1E-05 36.9 -5.6 46 185-232 62-107 (326)
84 KOG2120 SCF ubiquitin ligase, 39.0 11 0.00023 32.2 0.1 37 184-222 334-373 (419)
85 PF09675 Chlamy_scaf: Chlamydi 37.1 1.3E+02 0.0028 21.4 5.2 58 8-81 2-60 (114)
86 COG3903 Predicted ATPase [Gene 37.1 2.9E+02 0.0062 24.6 8.5 118 5-134 170-291 (414)
87 KOG1947 Leucine rich repeat pr 37.0 22 0.00048 31.3 1.9 39 186-225 267-308 (482)
88 PF13306 LRR_5: Leucine rich r 27.4 68 0.0015 22.4 2.8 43 184-229 54-96 (129)
89 PF14050 Nudc_N: N-terminal co 24.2 1.6E+02 0.0036 18.5 3.7 27 4-30 4-30 (62)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-46 Score=346.99 Aligned_cols=226 Identities=34% Similarity=0.536 Sum_probs=200.3
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcC-CCCCCCCCcchhhHHHHhHhcCCchhHHHHHHH
Q 047834 3 QSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNY-PAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLF 81 (232)
Q Consensus 3 ~~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~ 81 (232)
+.++|++|+++|+|+|||+.++|+.|+. +++..+|+++.+.+.+. ..+.+++.+.++++|++||+.||++ +|.||+|
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~-K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLy 418 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLAC-KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLY 418 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcC-CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHh
Confidence 4789999999999999999999999999 78889999999999887 5556667778999999999999977 8999999
Q ss_pred hhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh-----------hHHHHHHHHHHHhccc
Q 047834 82 CALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-----------MHDMLRDLALWIASQD 150 (232)
Q Consensus 82 ~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~-----------mhdli~~~~~~i~~~e 150 (232)
||+||+||.|+++.|+..|+|+||+.+..+...++++|+.|+++||+++|+.. |||+||+||.+++.+.
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccc
Confidence 99999999999999999999999999977778899999999999999999975 9999999999999976
Q ss_pred cCCccceecCCCCceeeccccccccccceeEec-----------------------------------CCCCCCccEEEe
Q 047834 151 KGNKILASKPENGKLIIDQQSVTWNKAVRVSLS-----------------------------------PPSCPRLLTLLV 195 (232)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsl~-----------------------------------~~~l~~Lr~L~l 195 (232)
+...+...+..+......++...|..+|+++++ +..++.||+|||
T Consensus 499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEEC
Confidence 654444555555555557788888888888887 234789999999
Q ss_pred ccC-CCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 196 RYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 196 ~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
++| .+.+||++ |++|.+||||||++| .++.||.+|
T Consensus 579 s~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l 614 (889)
T KOG4658|consen 579 SGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGL 614 (889)
T ss_pred CCCCccCcCChH-HhhhhhhhcccccCC-CccccchHH
Confidence 988 88999999 999999999999999 999999875
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=3e-27 Score=229.58 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=105.8
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHHh
Q 047834 3 QSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFC 82 (232)
Q Consensus 3 ~~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~ 82 (232)
+.+++++|+++|+|+||||+++|+.|++ ++.++|+.++++|+..... +|.++|++||++|+++..|.||+++
T Consensus 374 ~~~l~~~iv~~c~GLPLAl~vlgs~L~~--k~~~~W~~~l~~L~~~~~~------~I~~~L~~SYd~L~~~~~k~~Fl~i 445 (1153)
T PLN03210 374 FMELASEVALRAGNLPLGLNVLGSYLRG--RDKEDWMDMLPRLRNGLDG------KIEKTLRVSYDGLNNKKDKAIFRHI 445 (1153)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHHhCccH------HHHHHHHHhhhccCccchhhhhhee
Confidence 5678999999999999999999999999 7899999999999875443 7999999999999864249999999
Q ss_pred hhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhccc
Q 047834 83 ALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE------MHDMLRDLALWIASQD 150 (232)
Q Consensus 83 a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~------mhdli~~~~~~i~~~e 150 (232)
|+||.+..++ .+..|.+.+.... +..++.|++++|++. |||++|+||+++++++
T Consensus 446 a~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 446 ACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhh
Confidence 9999985443 4566777654433 134899999999975 9999999999998765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.79 E-value=3.2e-20 Score=155.27 Aligned_cols=103 Identities=32% Similarity=0.601 Sum_probs=88.6
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHHhh
Q 047834 4 SYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCA 83 (232)
Q Consensus 4 ~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a 83 (232)
.+++++|+++|+|+||||+++|++|+. +.+..+|+++++.+........+....+..++.+||+.||++ +|+||+|||
T Consensus 182 ~~~~~~i~~~c~glPLal~~~a~~l~~-~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~ 259 (287)
T PF00931_consen 182 EDLAKEIVEKCGGLPLALKLIASYLRS-KSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDE-LRRCFLYLS 259 (287)
T ss_dssp CTHHHHHHHHTTT-HHHHHHHHHHHHH-HHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGG
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccceechhcCCcc-HHHHHhhCc
Confidence 467899999999999999999999977 348899999999988776544444457999999999999998 799999999
Q ss_pred hcCCCccccHHHHHHHHHHcCCCCC
Q 047834 84 LFLKNQLIRKDEHIDLWIGEGLLRD 108 (232)
Q Consensus 84 ~fp~~~~~~~~~li~~w~a~g~~~~ 108 (232)
+||+++.|+++.++++|+++|++..
T Consensus 260 ~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 260 IFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp GSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999987
No 4
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.67 E-value=1.8e-08 Score=59.93 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
++|++|++++|+++.+|.. +++|++|++|+++++ .|+++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCcC
Confidence 5899999999999999999 999999999999999 9998874
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=7.6e-07 Score=56.75 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=26.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
+..+++|++|++++|.++.+|+..|.+|++|++|+++++
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 345677777777777777766654677777777777776
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=8.1e-06 Score=51.91 Aligned_cols=43 Identities=30% Similarity=0.522 Sum_probs=39.8
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
++|++|++++|++..+|...|.++++|++||++++ +++.+|+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~ 43 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD 43 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETT
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHH
Confidence 58999999999999999877999999999999999 99998864
No 7
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.16 E-value=0.0001 Score=36.79 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=14.3
Q ss_pred CccEEEccCCCCCCCCCCCC
Q 047834 213 ALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 213 ~Lr~LdL~~~~~l~~LP~si 232 (232)
+||+|||++| +++++|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 4778888888 887777764
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.11 E-value=0.00026 Score=61.08 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=44.0
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
...+++|.+|||+++++++.|++ ++.|++|.+||+|+. .|..||.+.
T Consensus 248 ~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN-~is~Lp~sL 294 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNN-DISSLPYSL 294 (565)
T ss_pred hcccccceeeeccccccccCchH-HHHhhhhhhhcccCC-ccccCCccc
Confidence 56889999999999999999999 999999999999999 999999763
No 9
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=97.08 E-value=0.00028 Score=32.82 Aligned_cols=17 Identities=59% Similarity=0.905 Sum_probs=9.6
Q ss_pred CCccEEEccCCCCCCCCC
Q 047834 212 PALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 212 ~~Lr~LdL~~~~~l~~LP 229 (232)
++||+|+|++| ++++||
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 36777788887 677776
No 10
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.02 E-value=0.00018 Score=35.92 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.3
Q ss_pred CccEEEeccCCCCCCChHhhcCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQSM 211 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~~L 211 (232)
+|++|++++|+++.+|++ |++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT-
T ss_pred CccEEECCCCcCEeCChh-hcCC
Confidence 689999999999999999 7764
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.97 E-value=0.00011 Score=56.64 Aligned_cols=43 Identities=30% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+.+|.+|.+.++.++++|.+ |.+|+.||.|++.-. ++..+|.
T Consensus 54 ~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lpr 96 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPR 96 (264)
T ss_pred HhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCcc
Confidence 344555555555555555555 555555555555444 4444444
No 12
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.95 E-value=0.00056 Score=65.65 Aligned_cols=45 Identities=44% Similarity=0.681 Sum_probs=41.7
Q ss_pred CCccEEEeccCC--CCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYAS--MKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 188 ~~Lr~L~l~~~~--l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+.|++|-+.++. +..++..||..|+.||+|||++|.++.+||++|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 369999999995 899999999999999999999999999999987
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.84 E-value=0.0012 Score=51.37 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=17.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
+..+++|++|++++|.++.+++.+...+++|+.|++++. +|..+
T Consensus 60 l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l 103 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDL 103 (175)
T ss_dssp ----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SC
T ss_pred ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCCh
Confidence 455677888888888888887663346788888888877 76654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.57 E-value=0.00046 Score=65.04 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=44.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+..+++||+|+|++|.+..+|++++.++..|+.|+|||. +++.||+.|
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tv 426 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTV 426 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHH
Confidence 567899999999999999999999999999999999999 999999754
No 15
>PLN03150 hypothetical protein; Provisional
Probab=96.56 E-value=0.0025 Score=59.34 Aligned_cols=44 Identities=30% Similarity=0.514 Sum_probs=27.6
Q ss_pred CCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCC
Q 047834 185 PSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~ 230 (232)
..+++|++|+|++|++. .+|++ +++|.+|++|||+++ ++. .+|+
T Consensus 463 ~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N-~l~g~iP~ 508 (623)
T PLN03150 463 GSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGN-SLSGRVPA 508 (623)
T ss_pred hCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCC-cccccCCh
Confidence 34566666666666665 56666 666777777777666 554 5554
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.40 E-value=0.0077 Score=59.98 Aligned_cols=43 Identities=14% Similarity=0.407 Sum_probs=37.7
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
.+|++|+|++|.++.+|.+ ++++++|++|+|++|.+++.+|..
T Consensus 846 ~nL~~L~Ls~n~i~~iP~s-i~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWW-IEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred cccCEeECCCCCCccChHH-HhcCCCCCEEECCCCCCcCccCcc
Confidence 4788888888888899999 899999999999999889888864
No 17
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.28 E-value=0.0026 Score=29.49 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=11.9
Q ss_pred CCccEEEeccCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLP 204 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp 204 (232)
++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 58999999999999887
No 18
>PLN03150 hypothetical protein; Provisional
Probab=96.27 E-value=0.0036 Score=58.27 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=40.5
Q ss_pred CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s 231 (232)
+..+++|++|+|++|.+. .+|.+ +++|.+|++|||+++ ++. .+|++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~ 485 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPES 485 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchH
Confidence 456789999999999887 89999 999999999999999 887 67764
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.25 E-value=0.0025 Score=55.25 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
...+.+|.+|+|.++++..+|+. +|+|.+|+.|++.|. .+. .|.
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gN-pfr-~Pr 544 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGN-PFR-QPR 544 (565)
T ss_pred hhhhhhcceeccCCCchhhCChh-hccccceeEEEecCC-ccC-CCH
Confidence 45678999999999999999999 999999999999999 887 554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.17 E-value=0.00086 Score=51.70 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+.++.+|+.|.++++++-.+|.+ +|.|..||.|.+.|. +++-||+++
T Consensus 146 vg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgn-rl~vlppel 192 (264)
T KOG0617|consen 146 VGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGN-RLTVLPPEL 192 (264)
T ss_pred hhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccc-eeeecChhh
Confidence 56778888888888888888888 888888888888888 888888753
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.77 E-value=0.009 Score=46.41 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=19.4
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+.+|+.|+|++|+++.++. +..|++|++|++++. +|+++++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~ 81 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISE 81 (175)
T ss_dssp T-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CH
T ss_pred hhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCcccc
Confidence 56899999999999999987 889999999999999 9988753
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.77 E-value=0.003 Score=57.80 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=36.9
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
..+|+-+|+|++|+|+.||.+++-+|..|-+||||+. +++.||+.|
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~ 169 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQI 169 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHH
Confidence 3467778888888888888888888888888888888 888888753
No 23
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.69 E-value=0.013 Score=57.09 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~ 230 (232)
+..+++|++|++++|.+. .+|.+ ++++++|++|||++| ++. .+|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~ 206 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLVGQIPR 206 (968)
T ss_pred HhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCcCcCCh
Confidence 345667777777777553 56776 777777777777777 544 4554
No 24
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.64 E-value=0.015 Score=56.72 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834 185 PSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s 231 (232)
..+++|++|+|++|.+. .+|.+ ++++.+|++|+|+++ ++. .+|.+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~ 231 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYE 231 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC-ccCCcCChh
Confidence 45677777777777654 56777 777777888887777 554 55543
No 25
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.53 E-value=0.0088 Score=30.81 Aligned_cols=18 Identities=50% Similarity=0.779 Sum_probs=10.7
Q ss_pred CCccEEEccCCCCCCCCCC
Q 047834 212 PALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 212 ~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+|++|+|+++ .|+.+|+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45566666666 6666654
No 26
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.53 E-value=0.0088 Score=30.81 Aligned_cols=18 Identities=50% Similarity=0.779 Sum_probs=10.7
Q ss_pred CCccEEEccCCCCCCCCCC
Q 047834 212 PALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 212 ~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+|++|+|+++ .|+.+|+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45566666666 6666654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.44 E-value=0.036 Score=52.64 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=19.3
Q ss_pred CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+|+.|+|++|++..+|.+ +. .+|++|+++++ +++.+|++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N-~L~~LP~~ 280 (754)
T PRK15370 242 TIQEMELSINRITELPER-LP--SALQSLDLFHN-KISCLPEN 280 (754)
T ss_pred cccEEECcCCccCcCChh-Hh--CCCCEEECcCC-ccCccccc
Confidence 344444444444444444 22 34556666655 55555543
No 28
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.39 E-value=0.0062 Score=55.79 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+..|.+|+|+.|.+++.|.. +..-+++-+|+||+. +|+++|.+
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~ 144 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNS 144 (1255)
T ss_pred hcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCch
Confidence 56778999999999999999999 999999999999999 99999986
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.63 E-value=0.23 Score=48.07 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHh-HhcCCchhHHHHHHHhh
Q 047834 5 YSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS-YDHLSSETHRKCFLFCA 83 (232)
Q Consensus 5 ~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~s-y~~L~~~~~k~cfl~~a 83 (232)
+...++.+.|+|.|+++..++..+.. .... .......+... ....+...|.-. ++.||++ .+..++..|
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~--~~~~-~~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a 275 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQ--NNSS-LHDSARRLAGI------NASHLSDYLVEEVLDNVDLE-TRHFLLRCS 275 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh--CCCc-hhhhhHhhcCC------CchhHHHHHHHHHHhcCCHH-HHHHHHHhc
Confidence 34578999999999999999988866 2211 11111111110 011355555444 8899999 699999999
Q ss_pred hcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHHHHHHHHHh
Q 047834 84 LFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDMLRDLALWIA 147 (232)
Q Consensus 84 ~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli~~~~~~i~ 147 (232)
+++. ++.+-+ . .+.+. +.+...+++|.+++++.. .|++++++.+...
T Consensus 276 ~~~~---~~~~l~-~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 276 VLRS---MNDALI-V-----RVTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cccc---CCHHHH-H-----HHcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 9872 443322 1 11111 123578999999998641 8999999988764
No 30
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.52 E-value=0.037 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred CCCccEEEeccCCCCCCChHhh
Q 047834 187 CPRLLTLLVRYASMKGLPEWFF 208 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i 208 (232)
+.+|++|+|.+|+++.+|...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4789999999999999999844
No 31
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.52 E-value=0.037 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred CCCccEEEeccCCCCCCChHhh
Q 047834 187 CPRLLTLLVRYASMKGLPEWFF 208 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i 208 (232)
+.+|++|+|.+|+++.+|...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4789999999999999999844
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.46 E-value=0.024 Score=53.39 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=37.5
Q ss_pred ccccceeEec------------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834 174 WNKAVRVSLS------------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 174 ~~~~~~lsl~------------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
.+.++++.+. ..+++||++||+++++++.+.. |++|++|++|.+++. .++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnL-e~e 208 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNL-EFE 208 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCC-CCC
Confidence 4566666666 5688999999999999988843 777777777777666 444
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.01 E-value=0.11 Score=49.43 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=11.4
Q ss_pred CCccEEEeccCCCCCCCh
Q 047834 188 PRLLTLLVRYASMKGLPE 205 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~ 205 (232)
++|++|++++|.++.+|.
T Consensus 242 ~~Lk~LdLs~N~LtsLP~ 259 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPV 259 (788)
T ss_pred CCCcEEEecCCccCcccC
Confidence 566666666666666654
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.62 E-value=0.1 Score=30.64 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.6
Q ss_pred CCCCCCccEEEeccCCCCCCCh
Q 047834 184 PPSCPRLLTLLVRYASMKGLPE 205 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~ 205 (232)
+..+++|++|++++|.++.+|.
T Consensus 20 l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp GTTCTTSSEEEETSSCCSBEGG
T ss_pred HhCCCCCCEEEecCCCCCCCcC
Confidence 4688999999999999998876
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.57 E-value=0.077 Score=50.47 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
++|++|++++|+++.+|.+ +. .+|+.|+|++| ++..+|.+
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N-~L~~LP~~ 259 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN-RITELPER 259 (754)
T ss_pred cCCCEEECCCCccccCChh-hh--ccccEEECcCC-ccCcCChh
Confidence 4788888888888888887 43 46888888888 88888864
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.49 E-value=0.061 Score=47.35 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=9.1
Q ss_pred CccEEEeccC-CCCCCChH
Q 047834 189 RLLTLLVRYA-SMKGLPEW 206 (232)
Q Consensus 189 ~Lr~L~l~~~-~l~~lp~~ 206 (232)
+|++|.+.+| .+..+|++
T Consensus 95 nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 95 GLEKLTVCHCPEISGLPES 113 (426)
T ss_pred hhhheEccCcccccccccc
Confidence 4555555555 44455543
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.95 E-value=0.026 Score=42.11 Aligned_cols=43 Identities=33% Similarity=0.426 Sum_probs=27.4
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+++-+.+|++.+|.+..+|.+ +..|+.||.|+++.. .+...|.
T Consensus 75 kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~ 117 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPR 117 (177)
T ss_pred ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchH
Confidence 345566666666666666666 666666666666666 6655553
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.87 E-value=0.036 Score=52.80 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=41.5
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
.+++.+|.+|.|.++.+..+|.+ +..+++|++||+|+. .+...|.-
T Consensus 87 ~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N-~f~~~Pl~ 132 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFN-HFGPIPLV 132 (1081)
T ss_pred hhhhhcchhheeccchhhcCchh-HHhhhcccccccchh-ccCCCchh
Confidence 56788999999999999999999 999999999999999 88888863
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.78 E-value=0.053 Score=47.34 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=22.5
Q ss_pred CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+|+.|+++++.+..+|.. ++.+++|+.|+++++ ++..+|.
T Consensus 141 nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~ 180 (394)
T COG4886 141 NLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPK 180 (394)
T ss_pred hcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhh
Confidence 555555555555555544 555555555555555 5555554
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.84 E-value=0.062 Score=40.16 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=42.0
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+....+|...+|++|.++++|..|..+++-+..|+|++. .|..+|++
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE 95 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE 95 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH
Confidence 345678889999999999999998888889999999999 99999975
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.69 E-value=0.091 Score=45.85 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=41.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
...+++|+.|++.+|++..+|.. .+.+.+|+.|++++. .+..+|..
T Consensus 159 ~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N-~i~~l~~~ 204 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGN-KISDLPPE 204 (394)
T ss_pred hhccccccccccCCchhhhhhhh-hhhhhhhhheeccCC-ccccCchh
Confidence 45789999999999999999998 779999999999999 99999975
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.64 E-value=0.3 Score=43.12 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=35.5
Q ss_pred CccEEEeccC-CCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 189 RLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 189 ~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+|++|.+++| .++.+|+. +. .+|++|++++|.++.+||+++
T Consensus 73 sLtsL~Lsnc~nLtsLP~~-LP--~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGS-IP--EGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred CCcEEEccCCCCcccCCch-hh--hhhhheEccCccccccccccc
Confidence 6999999998 78899987 43 689999999998999999874
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.53 E-value=0.14 Score=46.67 Aligned_cols=43 Identities=30% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
-.|+.||++.|++..||-+ |.+|++||||-|... .+.+=|.+|
T Consensus 211 LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenN-PLqSPPAqI 253 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENN-PLQSPPAQI 253 (722)
T ss_pred CceeeeecccCceeecchh-hhhhhhheeeeeccC-CCCCChHHH
Confidence 4688999999999999999 999999999999988 887766543
No 44
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=89.55 E-value=0.2 Score=47.88 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=26.7
Q ss_pred CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
+|++|++++|+++.||++ ++++.+|++|+|+++ .+.
T Consensus 423 ~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred hhhhhhhccCcccccChH-HhhccCCCeEECCCC-CCC
Confidence 566777777777777777 777788888888777 664
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=89.49 E-value=0.12 Score=43.57 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=17.6
Q ss_pred CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
|.++|.|.+|.++.+.. +++|.+|.+||+++. +|++
T Consensus 353 NIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N-~Ie~ 388 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSN-QIEE 388 (490)
T ss_pred CEeeeehhhhhHhhhhh--hHhhhhheecccccc-chhh
Confidence 33444444444444444 455555556666555 5544
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.40 E-value=0.096 Score=47.58 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=24.4
Q ss_pred CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
-|++|.+.+|+++.+|+. ||.+..|..||.+.| .+.+||+
T Consensus 144 pLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slps 183 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPS 183 (722)
T ss_pred cceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchH
Confidence 356666666666666666 666666666666666 6666654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.22 E-value=0.16 Score=44.83 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
.+..|+.|.+.+|.+..++. +..+.+|++|+++++ .+..++
T Consensus 138 ~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n-~i~~ie 178 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYN-RIVDIE 178 (414)
T ss_pred hccchhhheeccCcchhccC--CccchhhhcccCCcc-hhhhhh
Confidence 34445555555555555555 445555555555555 554443
No 48
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.11 E-value=0.27 Score=25.35 Aligned_cols=17 Identities=47% Similarity=0.620 Sum_probs=12.7
Q ss_pred CccEEEccCCCCCCCCCC
Q 047834 213 ALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 213 ~Lr~LdL~~~~~l~~LP~ 230 (232)
+|++|++++. ++++||+
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 5777777777 7777775
No 49
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=88.93 E-value=0.29 Score=42.73 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
++.+++||.|+|+.|+|+.|-+.=|..|..|-.|-+-|.-+|+.||+
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 44556666666666666654333355566654444444226666664
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.69 E-value=0.25 Score=43.65 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|+++++.|..+.. +..|..|+.|+++++ .|..++.
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~ 157 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG 157 (414)
T ss_pred hhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC
Confidence 468899999999999999988 788999999999999 8877653
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.65 E-value=0.3 Score=46.19 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCCCCccEEEeccCCCC--CCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMK--GLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~--~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
..+|+|+.|.+.|-.+. ++-.- ..++++|+.||+|+| +++.|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~l-c~sFpNL~sLDIS~T-nI~nl 188 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQL-CASFPNLRSLDISGT-NISNL 188 (699)
T ss_pred hhCcccceEEecCceecchhHHHH-hhccCccceeecCCC-CccCc
Confidence 46799999999987542 33444 778999999999999 99876
No 52
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=87.27 E-value=0.45 Score=39.81 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=8.4
Q ss_pred CCCCccEEEeccCCCC
Q 047834 186 SCPRLLTLLVRYASMK 201 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~ 201 (232)
.+++|++|++++|.+.
T Consensus 219 ~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 219 SLKSLEVLNLGDNNLT 234 (319)
T ss_pred ccCCCCEEecCCCcCc
Confidence 3455555555555443
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.26 E-value=0.46 Score=38.98 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCCCCCccEEEeccCCC---CCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASM---KGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l---~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
.-.+++|++|.+++|.+ +.++. ..++.+|..||+..| ..+++
T Consensus 87 ~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~-~~~~l 131 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNC-SVTNL 131 (260)
T ss_pred hhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccC-Ccccc
Confidence 34568899999988844 46666 677888888898888 55543
No 54
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.85 E-value=0.52 Score=24.06 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=11.5
Q ss_pred CCccEEEccCCCCCC
Q 047834 212 PALRVLEWSRNGDLT 226 (232)
Q Consensus 212 ~~Lr~LdL~~~~~l~ 226 (232)
++|+.|+|++|.+++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 578888888886664
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.81 E-value=0.67 Score=38.05 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=30.5
Q ss_pred CCCCCCccEEEeccC--CCC-CCChHhhcCCCCccEEEccCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYA--SMK-GLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~--~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
++.+++|++|.++.| ++. .++-. ..++++|++|++++. +|+-
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~ 105 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKD 105 (260)
T ss_pred CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-cccc
Confidence 567788888888887 443 45555 566688888888888 6653
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=84.30 E-value=0.5 Score=39.97 Aligned_cols=34 Identities=24% Similarity=0.547 Sum_probs=19.2
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
.|.+|+|+++.|++..+.. +..|++|+.||||+.
T Consensus 306 ~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN 339 (490)
T ss_pred ccceeEEeccccceeeehh--hhhcccceEeecccc
Confidence 3555666666555554444 455566666666655
No 57
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=84.21 E-value=0.66 Score=42.69 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=31.9
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
+..++.||.|.|.||+++.+|.--|..|.+|+.|||-+. .|.+
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaS 430 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIAS 430 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCC-ccee
Confidence 455777888888888888888766777888888888776 5543
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=83.99 E-value=0.45 Score=40.74 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
+..++||++|+|++|-++ .+-.. +..+++||.|++++| .++
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l~dc-ll~ 254 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNLGDC-LLE 254 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeeccccc-ccc
Confidence 567788888888888442 45555 666788888888888 665
No 59
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=83.77 E-value=0.91 Score=41.80 Aligned_cols=42 Identities=31% Similarity=0.450 Sum_probs=34.6
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
+..+.+|.+|.|+.|++..||.-.|++|++|+.|||... .|+
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~ir 234 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIR 234 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-cee
Confidence 556778899999999999999876788999999998876 554
No 60
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=83.10 E-value=0.89 Score=38.03 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
..+.+|++|++++|++. .++.. +..+.+|++|++++| .+.
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~ 206 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNN-GLT 206 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCC-ccC
Confidence 34567888888888765 34555 566678999999888 664
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=0.36 Score=38.25 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=21.2
Q ss_pred CCCCccEEEeccC-CCCCCChHhhcCCCCccEEEccCC
Q 047834 186 SCPRLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 186 ~l~~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
-.++|+.|++++| +|++---.-+.++++||.|.+++.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 3466666666666 555433333566666666666654
No 62
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.03 E-value=0.7 Score=22.94 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=7.8
Q ss_pred CCccEEEccCCCCC
Q 047834 212 PALRVLEWSRNGDL 225 (232)
Q Consensus 212 ~~Lr~LdL~~~~~l 225 (232)
++|++|||++| .|
T Consensus 2 ~~L~~L~l~~n-~i 14 (24)
T PF13516_consen 2 PNLETLDLSNN-QI 14 (24)
T ss_dssp TT-SEEE-TSS-BE
T ss_pred CCCCEEEccCC-cC
Confidence 57778888877 54
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=79.28 E-value=0.25 Score=46.41 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=26.1
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
++.|+.|+|+.|++.+.. . +..+.+|+.|||++. .+..+|
T Consensus 186 l~ale~LnLshNk~~~v~-~-Lr~l~~LkhLDlsyN-~L~~vp 225 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-N-LRRLPKLKHLDLSYN-CLRHVP 225 (1096)
T ss_pred HHHhhhhccchhhhhhhH-H-HHhcccccccccccc-hhcccc
Confidence 456677777776665555 2 666677777777766 666665
No 64
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=78.99 E-value=0.46 Score=41.50 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=17.4
Q ss_pred EEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 192 TLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 192 ~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
.+.|..|.|+.||+.-|+.+++||.||||+. +|+.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~ 105 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISF 105 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceeccccc-chhh
Confidence 3444445555555544555555555555554 4443
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.38 E-value=1.1 Score=35.52 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=29.7
Q ss_pred CCCCCCccEEEeccC-CCCCCChHhhc-CCCCccEEEccCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYA-SMKGLPEWFFQ-SMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~-~l~~lp~~~i~-~L~~Lr~LdL~~~~~l~~ 227 (232)
+..++.++.|.+.+| ++..-=-++++ -..+|+.|+|++|++|++
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 556778888888888 43221111122 357899999999998874
No 66
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=76.84 E-value=22 Score=26.93 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=49.3
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHHhhhcCCCccccHHHHHHHHHHcCCCCCCcc
Q 047834 32 RNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHN 111 (232)
Q Consensus 32 ~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~ 111 (232)
..+.++--.+...|-+. ....+..+|..|... .|..|.| ....||++|.|.+...
T Consensus 67 ~ms~~EQlq~MrDL~~~----------~dt~isR~Y~~ls~n-~KL~fWY--------------~Lae~M~~G~VipvP~ 121 (159)
T PF09150_consen 67 QMSQEEQLQAMRDLANR----------ADTPISRAYGALSAN-TKLGFWY--------------QLAEGMEQGTVIPVPS 121 (159)
T ss_dssp CS-HHHHHHHHHHHHHT-------------HHHHHHHCC-HH-HHHHHHH--------------HHHHHHHTTSS--S-T
T ss_pred hCCHHHHHHHHHHHHhC----------CCCHHHHHHhccCCc-chHHHHH--------------HHHHHhcCCcEecCCC
Confidence 36666666666655543 234567899999999 6999998 4678999999998877
Q ss_pred hHHHHHHHHHHHHHHHHcccch
Q 047834 112 IAVARLQGESIIDSLIRVCLLE 133 (232)
Q Consensus 112 ~~~~~~~~~~~l~~Lv~~~ll~ 133 (232)
....-..+...++.+....+=+
T Consensus 122 ~Y~ls~~a~~vl~~I~~Ldf~Q 143 (159)
T PF09150_consen 122 GYQLSENANEVLEAIKQLDFEQ 143 (159)
T ss_dssp T----HHHHHHHHHHHCS-HHH
T ss_pred CCCcCHHHHHHHHHHHcCChhh
Confidence 7888888888888776666554
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=75.05 E-value=2.6 Score=33.60 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=25.7
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
++.+++|.+|.+.+|+|..+-+.+-.-+++|..|-|.+. +|..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~ 102 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQE 102 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhh
Confidence 455666777777777776666662233445677666665 4443
No 68
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.81 E-value=2.6 Score=21.72 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=10.2
Q ss_pred CCCccEEEccCCCCCCCC
Q 047834 211 MPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 211 L~~Lr~LdL~~~~~l~~L 228 (232)
|.+|+.|+|++. +|+++
T Consensus 1 L~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 1 LTNLEELDLSQN-KIKKI 17 (26)
T ss_pred CCccCEEECCCC-cccee
Confidence 356666666666 55544
No 69
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=73.58 E-value=1.7 Score=37.04 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHH-Hhh
Q 047834 5 YSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFL-FCA 83 (232)
Q Consensus 5 ~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~a 83 (232)
+....|++.|+|.|-.+..+...+. .|.... ...... ...-......+...|..|++.+ +.-+. ...
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~~-------~~a~~~---~~~~I~-~~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~ 270 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRVR-------DFAQVK---GDGVIT-KEIADKALDMLGVDELGLDEMD-RKYLRTIIE 270 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHH-------HHHHHc---CCCCCC-HHHHHHHHHHhCCCcCCCCHHH-HHHHHHHHH
Confidence 4577899999999954444443221 122110 000000 0000123344556677888774 66664 556
Q ss_pred hcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH-HHHHcccchh
Q 047834 84 LFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIID-SLIRVCLLEE 134 (232)
Q Consensus 84 ~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~-~Lv~~~ll~~ 134 (232)
.|+.+ .+..+.+-. .++. ....+++.++ .|++.+|++.
T Consensus 271 ~~~~~-~~~~~~~a~------~lg~------~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 271 KFGGG-PVGLDTLAA------ALGE------ERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HcCCC-ceeHHHHHH------HHCC------CcchHHHHhhHHHHHcCCccc
Confidence 66655 455444422 2222 2344556677 8888888874
No 70
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=1.4 Score=39.02 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=21.2
Q ss_pred CCccEEEeccCCCCCCC--hHhhcCCCCccEEEccCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLP--EWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp--~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
..|..|+|++|++..+| .- ++.|+.|+.|+++.| .+.+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~-~~~l~~L~~Lnls~t-gi~s 285 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYK-VGTLPGLNQLNLSST-GIAS 285 (505)
T ss_pred hHHhhccccCCcccccccccc-cccccchhhhhcccc-Ccch
Confidence 34556666666555444 33 555666666666666 5543
No 71
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=71.28 E-value=0.93 Score=40.07 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=29.1
Q ss_pred CCCCCCccEEEeccCCCCCCChHh-hcCCCCccEEEccCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWF-FQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~-i~~L~~Lr~LdL~~~~~l~ 226 (232)
...+++|+.|.|+.|.+....++. -..+.+|+.|.|++| .+.
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls 210 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLS 210 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCC
Confidence 456788888888888665444431 234778888888888 664
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.62 E-value=1.8 Score=36.67 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=28.3
Q ss_pred CCCCCCccEEEeccC-CCC-CCChHhhcCCCCccEEEccCCCCC
Q 047834 184 PPSCPRLLTLLVRYA-SMK-GLPEWFFQSMPALRVLEWSRNGDL 225 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~-~l~-~lp~~~i~~L~~Lr~LdL~~~~~l 225 (232)
...+++|.-|||++| .++ ..-.. |-+++.|++|.|+.|+.|
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCC
Confidence 456788888888887 444 23333 567888888888888554
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.64 E-value=2.8 Score=35.58 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=25.2
Q ss_pred cccccccceeEecCCCCCCccEEEeccCC----CCCCChHhhcCCCCccEEEccCC
Q 047834 171 SVTWNKAVRVSLSPPSCPRLLTLLVRYAS----MKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 171 ~~~~~~~~~lsl~~~~l~~Lr~L~l~~~~----l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
.++|+.+..+ +..+|+|++|.++.|. |..+|. .+.+|++|=|.|+
T Consensus 83 iSdWseI~~i---le~lP~l~~LNls~N~L~s~I~~lp~----p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 83 ISDWSEIGAI---LEQLPALTTLNLSCNSLSSDIKSLPL----PLKNLRVLVLNGT 131 (418)
T ss_pred hccHHHHHHH---HhcCccceEeeccCCcCCCccccCcc----cccceEEEEEcCC
Confidence 3445555444 3566777777776663 344442 2456666666666
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.25 E-value=5.6 Score=20.58 Aligned_cols=13 Identities=54% Similarity=0.828 Sum_probs=8.1
Q ss_pred CCccEEEccCCCCC
Q 047834 212 PALRVLEWSRNGDL 225 (232)
Q Consensus 212 ~~Lr~LdL~~~~~l 225 (232)
++|++|||+++ .+
T Consensus 2 ~~L~~LdL~~N-~i 14 (28)
T smart00368 2 PSLRELDLSNN-KL 14 (28)
T ss_pred CccCEEECCCC-CC
Confidence 45667777766 44
No 75
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=61.48 E-value=9.5 Score=28.99 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHhcCCchHHHHHHHHHhcC
Q 047834 1 CSQSYSASVLCFACNSISLTLITIGSAMAS 30 (232)
Q Consensus 1 ~~~~~i~~~iv~~c~GlPLAl~~~g~~L~~ 30 (232)
|+|.+||++| |.|-|.+++|+.++.
T Consensus 107 ~tY~~iA~~i-----G~PsaaRaVg~A~~~ 131 (178)
T KOG4062|consen 107 STYGQIARRI-----GNPSAARAVGSAMAH 131 (178)
T ss_pred eeHHHHHHHh-----CCcHHHHHHHHHHcc
Confidence 5677777766 899999999999988
No 76
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=53.27 E-value=7.6 Score=33.51 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=18.9
Q ss_pred CCCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCC
Q 047834 184 PPSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
++.+++||.|.+.+|.++ .+-+.|-...+.|++|++.|+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 444555566655555432 233332333455555555555
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.79 E-value=5.1 Score=33.73 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=26.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
..+++.|.+|.|+-|.|+.|-. +.....|+-|-|+.. .|..
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~s 77 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIES 77 (388)
T ss_pred HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-cccc
Confidence 3566677777777777766666 566666666666655 4443
No 78
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=48.98 E-value=3 Score=39.64 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=25.2
Q ss_pred CccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
+|..|.|++|-++.|-+ |.+|++|+-|||++.
T Consensus 233 ~L~~L~lrnN~l~tL~g--ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLRG--IENLKSLYGLDLSYN 264 (1096)
T ss_pred hheeeeecccHHHhhhh--HHhhhhhhccchhHh
Confidence 37777777777777777 788888888888876
No 79
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=45.72 E-value=10 Score=18.22 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=10.5
Q ss_pred CccEEEeccCCCCCCChH
Q 047834 189 RLLTLLVRYASMKGLPEW 206 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~ 206 (232)
+|..|++.++++++|.+.
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 355566666666665543
No 80
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=41.72 E-value=23 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+...++|+++++..++. +-.+..|.+|.|... +|+.+-+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p 81 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDP 81 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCC-cceeecc
Confidence 3567899999999999888 889999999999999 8877643
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=41.58 E-value=5.9 Score=32.48 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=28.8
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
..++-+++..|+...+|.| ++++++++++|+.++
T Consensus 88 ~e~~~~~~~~n~~~~~p~s-~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 88 RETVNAASHKNNHSQQPKS-QKKEPHPKKNEQKKT 121 (326)
T ss_pred HHHHHHHhhccchhhCCcc-ccccCCcchhhhccC
Confidence 3456677778888999999 899999999999988
No 82
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=41.02 E-value=11 Score=19.38 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.6
Q ss_pred hhcCCCCccEEEccCC
Q 047834 207 FFQSMPALRVLEWSRN 222 (232)
Q Consensus 207 ~i~~L~~Lr~LdL~~~ 222 (232)
+|..|++|++||....
T Consensus 8 Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 8 VIRLLPQLRKLDXXXX 23 (26)
T ss_pred HHHHCCccceeccccc
Confidence 3778999999998654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=39.61 E-value=0.99 Score=36.86 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+.+..|..|+++.+.+..+|.+ ++.+..++.+++... +...+|.|.
T Consensus 62 s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~ 107 (326)
T KOG0473|consen 62 SILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQ 107 (326)
T ss_pred HHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccc
Confidence 3456778889999999999999 899999999999999 999999874
No 84
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=38.97 E-value=11 Score=32.19 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCCCCCccEEEeccC-CCCCCChHh--hcCCCCccEEEccCC
Q 047834 184 PPSCPRLLTLLVRYA-SMKGLPEWF--FQSMPALRVLEWSRN 222 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~-~l~~lp~~~--i~~L~~Lr~LdL~~~ 222 (232)
+.+++.|.+|+++.| .+ +|+.| ++.++.|.|||+-||
T Consensus 334 ~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 678899999999999 44 34332 578899999999998
No 85
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=37.12 E-value=1.3e+02 Score=21.38 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=34.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhc-CCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHH
Q 047834 8 SVLCFACNSISLTLITIGSAMA-SIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLF 81 (232)
Q Consensus 8 ~~iv~~c~GlPLAl~~~g~~L~-~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~ 81 (232)
+.||++..+.+.+..+--+... +-..+.-+...+++ +..--.-.|+.||.+ +|.||--
T Consensus 2 ~~Ivkk~n~t~v~~hl~~r~~~Ygd~s~~~DyqeAln---------------~V~e~~eaFd~LPa~-iRe~F~N 60 (114)
T PF09675_consen 2 NKIVKKFNKTGVIAHLEQRQPEYGDCSSPFDYQEALN---------------MVAEANEAFDELPAH-IRERFNN 60 (114)
T ss_pred hHHHHHHccchHHHHHHhcCCcccccCCHHhHHHHHH---------------HHHHHHHHHHHchHH-HHHHhCC
Confidence 3578888888876655322221 10123445555554 222334578999999 7999865
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=37.08 E-value=2.9e+02 Score=24.65 Aligned_cols=118 Identities=18% Similarity=0.160 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHH-H---hhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHH
Q 047834 5 YSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVN-E---LKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFL 80 (232)
Q Consensus 5 ~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~-~---L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl 80 (232)
....+|...-.|.|+||...++..++ ....+--.-++ + +........--+......+.+||.-|...+ +--|.
T Consensus 170 a~v~~icr~ldg~~laielaaarv~s--l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe-~~~~~ 246 (414)
T COG3903 170 AAVAEICRRLDGIPLAIELAAARVRS--LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE-RALFG 246 (414)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHh--cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH-HHHhc
Confidence 45677999999999999999999988 55554443332 1 111111111111247889999999999886 88898
Q ss_pred HhhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh
Q 047834 81 FCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE 134 (232)
Q Consensus 81 ~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~ 134 (232)
-++.|..++..+ -..|.+.|-.... +....-..+-.++++++...
T Consensus 247 rLa~~~g~f~~~----l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 247 RLAVFVGGFDLG----LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred chhhhhhhhccc----HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhh
Confidence 899888764433 3345454433210 12222334556777777763
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=36.97 E-value=22 Score=31.32 Aligned_cols=39 Identities=36% Similarity=0.511 Sum_probs=27.7
Q ss_pred CCCCccEEEeccCC-CC--CCChHhhcCCCCccEEEccCCCCC
Q 047834 186 SCPRLLTLLVRYAS-MK--GLPEWFFQSMPALRVLEWSRNGDL 225 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~-l~--~lp~~~i~~L~~Lr~LdL~~~~~l 225 (232)
.+++|++|.+.+|. ++ .+-.- ..++++||.|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccc
Confidence 37789999877774 43 34443 567888999999988554
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=27.41 E-value=68 Score=22.43 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+..+++|+.+.+.+ .+..++...+....+|+.+++.. ++..++
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~ 96 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS--NITEIG 96 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT--T-BEEH
T ss_pred eecccccccccccc-cccccccccccccccccccccCc--cccEEc
Confidence 44556778888865 66666666567778888888753 344443
No 89
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=24.25 E-value=1.6e+02 Score=18.49 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=23.9
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhcC
Q 047834 4 SYSASVLCFACNSISLTLITIGSAMAS 30 (232)
Q Consensus 4 ~~i~~~iv~~c~GlPLAl~~~g~~L~~ 30 (232)
..+.-.|++.|+|++=-+-++-++|++
T Consensus 4 D~~ll~iaq~~~~I~~~Ld~fF~FL~R 30 (62)
T PF14050_consen 4 DNMLLSIAQQCGGIEDFLDTFFSFLRR 30 (62)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345667999999999999999999998
Done!