Query 047834
Match_columns 232
No_of_seqs 188 out of 1337
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 05:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 2.2E-23 7.5E-28 188.0 2.3 136 3-152 315-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 1.1E-18 3.8E-23 169.3 12.8 131 4-150 307-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.7 6.6E-16 2.2E-20 140.0 12.2 128 4-147 307-449 (591)
4 1vt4_I APAF-1 related killer D 99.6 2E-16 6.7E-21 149.0 8.8 106 13-143 322-436 (1221)
5 2r9u_A Variable lymphocyte rec 98.0 1.3E-05 4.6E-10 60.9 7.5 47 184-231 53-99 (174)
6 3g39_A Variable lymphocyte rec 97.9 2.6E-05 9E-10 58.9 7.5 47 184-231 50-96 (170)
7 3e6j_A Variable lymphocyte rec 97.8 3E-05 1E-09 61.4 6.3 43 186-230 110-152 (229)
8 2o6r_A Variable lymphocyte rec 97.8 6.5E-05 2.2E-09 56.8 7.7 46 185-231 73-118 (177)
9 2ifg_A High affinity nerve gro 97.8 3.6E-05 1.2E-09 64.5 6.3 48 184-232 52-99 (347)
10 1a9n_A U2A', U2A'; complex (nu 97.7 3E-05 1E-09 58.8 4.6 46 184-230 60-105 (176)
11 2wfh_A SLIT homolog 2 protein 97.7 6.8E-05 2.3E-09 57.8 6.7 47 184-231 74-120 (193)
12 2v9t_B SLIT homolog 2 protein 97.7 5.9E-05 2E-09 59.4 6.4 46 184-230 76-121 (220)
13 2v9t_B SLIT homolog 2 protein 97.7 9.6E-05 3.3E-09 58.1 7.6 46 185-231 101-146 (220)
14 3e6j_A Variable lymphocyte rec 97.7 9.7E-05 3.3E-09 58.4 7.6 48 184-232 84-131 (229)
15 2o6s_A Variable lymphocyte rec 97.7 0.00011 3.8E-09 56.9 7.7 44 186-230 98-141 (208)
16 3rfs_A Internalin B, repeat mo 97.7 0.00011 3.8E-09 59.5 7.7 43 187-230 132-174 (272)
17 3rfs_A Internalin B, repeat mo 97.7 9.8E-05 3.3E-09 59.9 7.4 46 185-231 106-151 (272)
18 2o6r_A Variable lymphocyte rec 97.6 8.4E-05 2.9E-09 56.1 5.5 47 184-231 48-94 (177)
19 2ell_A Acidic leucine-rich nuc 97.6 0.00017 5.7E-09 53.9 7.0 44 184-229 67-111 (168)
20 4b8c_D Glucose-repressible alc 97.6 3.8E-05 1.3E-09 71.2 4.1 47 184-232 266-312 (727)
21 3m19_A Variable lymphocyte rec 97.6 0.00012 4.2E-09 58.5 6.6 45 185-230 104-148 (251)
22 4fcg_A Uncharacterized protein 97.6 2.5E-05 8.6E-10 65.3 2.5 58 174-232 103-170 (328)
23 2v70_A SLIT-2, SLIT homolog 2 97.6 0.00024 8.2E-09 55.8 7.9 42 186-228 79-120 (220)
24 1p9a_G Platelet glycoprotein I 97.5 0.00019 6.4E-09 58.9 7.3 46 185-231 121-166 (290)
25 1dce_A Protein (RAB geranylger 97.5 9.8E-05 3.4E-09 66.5 6.0 62 164-228 452-523 (567)
26 1p9a_G Platelet glycoprotein I 97.5 0.00014 4.9E-09 59.6 6.5 59 173-232 122-191 (290)
27 2o6s_A Variable lymphocyte rec 97.5 0.00011 3.8E-09 56.9 5.5 46 185-231 73-118 (208)
28 4fcg_A Uncharacterized protein 97.5 8E-05 2.7E-09 62.2 5.0 44 186-231 148-201 (328)
29 4b8c_D Glucose-repressible alc 97.5 4.5E-05 1.5E-09 70.7 3.7 47 184-232 243-289 (727)
30 3o6n_A APL1; leucine-rich repe 97.5 0.00013 4.4E-09 62.1 6.3 44 186-230 91-134 (390)
31 2o6q_A Variable lymphocyte rec 97.5 0.00023 7.7E-09 57.6 7.5 43 187-230 84-126 (270)
32 2r9u_A Variable lymphocyte rec 97.5 0.0001 3.5E-09 55.9 5.0 43 188-231 33-75 (174)
33 3m19_A Variable lymphocyte rec 97.5 0.00026 8.9E-09 56.6 7.5 57 174-231 106-173 (251)
34 4g8a_A TOLL-like receptor 4; l 97.5 5.6E-05 1.9E-09 67.9 3.9 46 184-230 96-141 (635)
35 2z80_A TOLL-like receptor 2, v 97.5 0.00031 1.1E-08 59.0 7.9 46 184-230 96-141 (353)
36 3oja_B Anopheles plasmodium-re 97.5 0.00018 6.3E-09 64.9 6.7 45 185-230 120-164 (597)
37 2v70_A SLIT-2, SLIT homolog 2 97.4 0.00024 8.3E-09 55.8 6.5 46 184-230 101-146 (220)
38 2je0_A Acidic leucine-rich nuc 97.4 0.00023 7.9E-09 52.0 6.0 44 184-229 60-104 (149)
39 1w8a_A SLIT protein; signaling 97.4 0.00017 5.7E-09 55.4 5.4 43 185-228 75-117 (192)
40 4g8a_A TOLL-like receptor 4; l 97.4 0.00016 5.5E-09 64.9 6.0 46 184-230 72-117 (635)
41 3g39_A Variable lymphocyte rec 97.4 0.00017 5.9E-09 54.3 5.0 44 187-231 29-72 (170)
42 2o6q_A Variable lymphocyte rec 97.4 0.00044 1.5E-08 55.8 7.6 45 185-230 130-174 (270)
43 2wfh_A SLIT homolog 2 protein 97.4 0.00015 5.2E-09 55.8 4.4 47 184-231 50-96 (193)
44 1xku_A Decorin; proteoglycan, 97.4 0.00019 6.3E-09 59.7 5.3 47 184-232 72-119 (330)
45 1a9n_A U2A', U2A'; complex (nu 97.4 0.00014 4.7E-09 55.0 3.9 58 171-230 60-130 (176)
46 2z7x_B TOLL-like receptor 1, v 97.3 0.00016 5.6E-09 63.7 4.8 45 184-230 41-86 (520)
47 3vq2_A TLR4, TOLL-like recepto 97.2 0.00045 1.5E-08 62.1 6.7 44 184-229 76-120 (606)
48 2ell_A Acidic leucine-rich nuc 97.2 0.00016 5.5E-09 54.0 3.1 46 185-231 117-165 (168)
49 1dce_A Protein (RAB geranylger 97.2 0.00015 5E-09 65.4 3.4 44 184-229 459-502 (567)
50 1w8a_A SLIT protein; signaling 97.2 0.00019 6.4E-09 55.2 3.4 45 185-231 51-96 (192)
51 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 0.00038 1.3E-08 62.2 5.7 46 184-230 72-117 (562)
52 2ft3_A Biglycan; proteoglycan, 97.2 0.00033 1.1E-08 58.2 5.0 47 184-232 74-121 (332)
53 3o53_A Protein LRIM1, AGAP0063 97.2 0.00032 1.1E-08 58.1 4.7 46 185-232 188-233 (317)
54 3vq2_A TLR4, TOLL-like recepto 97.2 0.00064 2.2E-08 61.0 7.1 41 185-226 101-141 (606)
55 3zyj_A Leucine-rich repeat-con 97.2 0.00056 1.9E-08 59.2 6.4 47 184-231 227-273 (440)
56 4fmz_A Internalin; leucine ric 97.2 0.0007 2.4E-08 56.4 6.7 56 171-229 62-126 (347)
57 2xot_A Amphoterin-induced prot 97.2 0.00097 3.3E-08 56.3 7.5 46 184-230 132-180 (361)
58 4ezg_A Putative uncharacterize 97.2 0.00049 1.7E-08 52.9 5.2 42 185-229 133-175 (197)
59 3oja_B Anopheles plasmodium-re 97.2 0.00083 2.8E-08 60.6 7.5 45 185-230 96-140 (597)
60 2xot_A Amphoterin-induced prot 97.2 0.00054 1.9E-08 57.8 5.9 47 184-231 108-154 (361)
61 1xeu_A Internalin C; cellular 97.2 0.0004 1.4E-08 56.1 4.9 42 186-230 61-102 (263)
62 1xku_A Decorin; proteoglycan, 97.1 0.0006 2E-08 56.6 5.8 44 185-230 237-280 (330)
63 1ozn_A Reticulon 4 receptor; N 97.1 0.00059 2E-08 55.4 5.7 42 187-229 128-169 (285)
64 3zyi_A Leucine-rich repeat-con 97.1 0.00056 1.9E-08 59.4 5.8 45 185-230 120-164 (452)
65 2je0_A Acidic leucine-rich nuc 97.1 0.00042 1.4E-08 50.6 4.2 43 184-229 38-81 (149)
66 2id5_A Lingo-1, leucine rich r 97.1 0.00081 2.8E-08 58.6 6.7 42 186-228 78-119 (477)
67 1h6u_A Internalin H; cell adhe 97.1 0.00093 3.2E-08 55.1 6.7 41 186-229 105-145 (308)
68 3o6n_A APL1; leucine-rich repe 97.1 0.00082 2.8E-08 57.1 6.5 45 185-230 114-158 (390)
69 3zyi_A Leucine-rich repeat-con 97.0 0.00093 3.2E-08 58.0 6.3 47 184-231 238-284 (452)
70 1h6t_A Internalin B; cell adhe 97.0 0.0012 4.1E-08 54.1 6.5 41 185-228 109-149 (291)
71 4ezg_A Putative uncharacterize 97.0 0.00086 2.9E-08 51.5 5.4 44 184-229 108-153 (197)
72 3zyj_A Leucine-rich repeat-con 97.0 0.0015 5.1E-08 56.5 7.5 43 186-229 110-152 (440)
73 1ogq_A PGIP-2, polygalacturona 97.0 0.00033 1.1E-08 58.0 3.0 44 185-230 122-167 (313)
74 2z81_A CD282 antigen, TOLL-lik 97.0 0.0014 4.7E-08 58.1 7.2 44 184-228 70-113 (549)
75 3v47_A TOLL-like receptor 5B a 97.0 0.00081 2.8E-08 58.1 5.3 40 185-226 76-116 (455)
76 2z63_A TOLL-like receptor 4, v 97.0 0.00083 2.8E-08 59.7 5.4 46 184-230 72-117 (570)
77 3oja_A Leucine-rich immune mol 97.0 0.00066 2.3E-08 59.8 4.7 56 175-232 169-233 (487)
78 2id5_A Lingo-1, leucine rich r 97.0 0.00087 3E-08 58.5 5.5 45 184-230 52-97 (477)
79 2ifg_A High affinity nerve gro 97.0 0.00051 1.7E-08 57.4 3.8 46 185-231 28-74 (347)
80 2z62_A TOLL-like receptor 4, v 96.9 0.0015 5.1E-08 52.7 6.4 40 187-227 99-138 (276)
81 2ft3_A Biglycan; proteoglycan, 96.9 0.00066 2.3E-08 56.4 4.3 43 186-230 239-281 (332)
82 1h6t_A Internalin B; cell adhe 96.9 0.0014 4.7E-08 53.7 6.0 41 186-229 154-194 (291)
83 1h6u_A Internalin H; cell adhe 96.9 0.0018 6.1E-08 53.4 6.7 42 185-229 126-167 (308)
84 3j0a_A TOLL-like receptor 5; m 96.9 0.0012 4.2E-08 62.0 6.2 42 184-227 69-111 (844)
85 2z63_A TOLL-like receptor 4, v 96.9 0.001 3.4E-08 59.2 5.3 47 184-231 96-144 (570)
86 1ozn_A Reticulon 4 receptor; N 96.9 0.0013 4.3E-08 53.4 5.5 47 184-231 101-147 (285)
87 1ziw_A TOLL-like receptor 3; i 96.9 0.0011 3.8E-08 60.4 5.6 44 186-230 71-114 (680)
88 3v47_A TOLL-like receptor 5B a 96.9 0.0011 3.9E-08 57.2 5.5 45 185-231 344-389 (455)
89 2z62_A TOLL-like receptor 4, v 96.8 0.00074 2.5E-08 54.5 3.7 46 184-230 72-117 (276)
90 2z80_A TOLL-like receptor 2, v 96.8 0.0011 3.6E-08 55.6 4.3 46 184-230 72-117 (353)
91 1ogq_A PGIP-2, polygalacturona 96.8 0.00032 1.1E-08 58.1 1.0 46 184-231 97-144 (313)
92 4glp_A Monocyte differentiatio 96.7 0.00098 3.3E-08 54.9 3.9 41 188-230 224-268 (310)
93 4fmz_A Internalin; leucine ric 96.7 0.0017 5.8E-08 54.0 5.4 44 185-229 284-327 (347)
94 2z81_A CD282 antigen, TOLL-lik 96.7 0.00098 3.3E-08 59.0 4.1 43 186-230 385-427 (549)
95 1o6v_A Internalin A; bacterial 96.7 0.0026 9E-08 55.4 6.7 41 186-229 88-128 (466)
96 1ds9_A Outer arm dynein; leuci 96.7 0.00018 6.2E-09 55.4 -0.6 41 187-229 69-109 (198)
97 2xwt_C Thyrotropin receptor; s 96.7 0.0013 4.3E-08 52.0 4.1 43 186-229 78-121 (239)
98 1wwl_A Monocyte differentiatio 96.6 0.0018 6.2E-08 53.3 4.8 42 188-230 228-270 (312)
99 4eco_A Uncharacterized protein 96.6 0.0011 3.9E-08 60.2 3.8 35 187-222 248-283 (636)
100 2xwt_C Thyrotropin receptor; s 96.6 0.00079 2.7E-08 53.2 2.4 43 186-229 53-97 (239)
101 1xeu_A Internalin C; cellular 96.6 0.0045 1.5E-07 49.8 6.9 40 186-228 126-165 (263)
102 1m9s_A Internalin B; cell inva 96.6 0.0025 8.5E-08 57.8 5.8 42 184-228 105-146 (605)
103 4ecn_A Leucine-rich repeat pro 96.6 0.0027 9.4E-08 60.0 6.3 46 184-231 591-637 (876)
104 1m9s_A Internalin B; cell inva 96.6 0.0029 9.8E-08 57.4 6.1 42 185-229 150-191 (605)
105 4eco_A Uncharacterized protein 96.6 0.0017 5.9E-08 59.0 4.6 41 189-231 489-531 (636)
106 2z66_A Variable lymphocyte rec 96.6 0.004 1.4E-07 50.9 6.4 44 184-228 195-238 (306)
107 1ziw_A TOLL-like receptor 3; i 96.5 0.0027 9.1E-08 57.8 5.5 45 186-231 534-578 (680)
108 3bz5_A Internalin-J, INLJ; leu 96.5 0.0056 1.9E-07 53.4 7.4 41 185-229 82-122 (457)
109 2z66_A Variable lymphocyte rec 96.5 0.002 7E-08 52.6 4.3 46 184-230 171-216 (306)
110 3rgz_A Protein brassinosteroid 96.5 0.0022 7.4E-08 59.6 4.8 46 184-231 652-699 (768)
111 2z7x_B TOLL-like receptor 1, v 96.5 0.0026 8.9E-08 56.0 5.1 42 188-231 421-462 (520)
112 1wwl_A Monocyte differentiatio 96.4 0.0019 6.4E-08 53.3 3.5 37 188-225 149-185 (312)
113 4ecn_A Leucine-rich repeat pro 96.4 0.0024 8.1E-08 60.4 4.4 41 189-231 729-771 (876)
114 1o6v_A Internalin A; bacterial 96.4 0.0032 1.1E-07 54.8 4.9 56 171-229 86-150 (466)
115 4glp_A Monocyte differentiatio 96.4 0.0011 3.8E-08 54.5 1.8 46 185-231 194-243 (310)
116 3a79_B TLR6, VLRB.59, TOLL-lik 96.3 0.0033 1.1E-07 56.0 4.9 42 188-231 450-491 (562)
117 3t6q_A CD180 antigen; protein- 96.3 0.0035 1.2E-07 56.2 5.0 40 187-227 104-143 (606)
118 1jl5_A Outer protein YOPM; leu 96.3 0.0099 3.4E-07 51.8 7.5 41 187-230 172-212 (454)
119 1jl5_A Outer protein YOPM; leu 96.3 0.0038 1.3E-07 54.5 4.8 41 188-231 131-171 (454)
120 4ay9_X Follicle-stimulating ho 96.3 0.0025 8.7E-08 53.4 3.6 46 185-231 174-220 (350)
121 3o53_A Protein LRIM1, AGAP0063 96.2 0.0039 1.3E-07 51.4 4.5 51 174-226 190-250 (317)
122 3j0a_A TOLL-like receptor 5; m 96.2 0.0048 1.6E-07 57.9 5.5 42 185-228 45-88 (844)
123 4ay9_X Follicle-stimulating ho 96.2 0.0022 7.5E-08 53.8 2.8 37 188-225 30-66 (350)
124 3t6q_A CD180 antigen; protein- 96.2 0.0031 1.1E-07 56.6 3.8 44 184-229 274-317 (606)
125 3rfe_A Platelet glycoprotein I 96.1 0.005 1.7E-07 44.3 3.9 35 188-222 31-65 (130)
126 3g06_A SSPH2 (leucine-rich rep 96.1 0.013 4.5E-07 53.3 7.5 38 187-229 80-117 (622)
127 3rgz_A Protein brassinosteroid 96.1 0.0041 1.4E-07 57.8 4.2 47 184-232 628-676 (768)
128 1ds9_A Outer arm dynein; leuci 96.1 0.0003 1E-08 54.2 -3.0 38 188-228 93-130 (198)
129 3cvr_A Invasion plasmid antige 95.9 0.016 5.4E-07 52.2 7.1 38 188-230 160-197 (571)
130 3oja_A Leucine-rich immune mol 95.9 0.0033 1.1E-07 55.3 2.6 42 185-229 55-96 (487)
131 3bz5_A Internalin-J, INLJ; leu 95.8 0.0061 2.1E-07 53.2 4.0 42 184-229 60-101 (457)
132 3rw6_A Nuclear RNA export fact 95.7 0.0053 1.8E-07 49.9 3.0 38 187-226 169-209 (267)
133 3g06_A SSPH2 (leucine-rich rep 95.5 0.026 9E-07 51.2 7.0 39 186-226 259-297 (622)
134 3cvr_A Invasion plasmid antige 94.8 0.027 9.3E-07 50.6 4.9 39 187-230 139-177 (571)
135 3e4g_A ATP synthase subunit S, 94.5 0.069 2.4E-06 40.4 5.8 43 184-226 81-128 (176)
136 2ca6_A RAN GTPase-activating p 94.3 0.016 5.6E-07 48.9 2.1 36 186-222 92-132 (386)
137 2ca6_A RAN GTPase-activating p 94.2 0.014 5E-07 49.2 1.5 41 185-227 241-288 (386)
138 2ast_B S-phase kinase-associat 94.1 0.023 7.9E-07 46.7 2.5 36 186-222 140-178 (336)
139 3e4g_A ATP synthase subunit S, 93.7 0.023 7.8E-07 43.1 1.7 56 172-227 82-154 (176)
140 2qen_A Walker-type ATPase; unk 93.5 0.68 2.3E-05 37.8 10.6 113 5-143 226-348 (350)
141 2ast_B S-phase kinase-associat 93.3 0.026 9E-07 46.4 1.6 42 184-226 114-156 (336)
142 1z7x_W Ribonuclease inhibitor; 92.0 0.06 2E-06 46.2 2.0 38 187-226 369-411 (461)
143 3goz_A Leucine-rich repeat-con 91.5 0.13 4.5E-06 43.0 3.6 44 185-229 47-96 (362)
144 3rw6_A Nuclear RNA export fact 91.5 0.13 4.3E-06 41.6 3.3 38 186-226 194-233 (267)
145 2fna_A Conserved hypothetical 90.8 2.3 7.7E-05 34.7 10.5 111 8-142 233-355 (357)
146 3goz_A Leucine-rich repeat-con 90.6 0.11 3.7E-06 43.4 2.2 41 188-229 80-125 (362)
147 3sb4_A Hypothetical leucine ri 90.4 0.16 5.5E-06 41.8 3.0 35 187-221 225-259 (329)
148 1z7x_W Ribonuclease inhibitor; 90.4 0.1 3.6E-06 44.7 2.0 39 186-226 254-297 (461)
149 3rfe_A Platelet glycoprotein I 89.3 0.4 1.4E-05 34.1 4.1 38 191-232 11-50 (130)
150 3ogk_B Coronatine-insensitive 89.3 0.13 4.5E-06 45.6 1.8 40 185-226 485-526 (592)
151 3un9_A NLR family member X1; l 87.1 0.26 8.8E-06 41.6 2.1 39 186-226 209-252 (372)
152 3sb4_A Hypothetical leucine ri 86.7 0.42 1.4E-05 39.2 3.2 46 184-231 269-315 (329)
153 3un9_A NLR family member X1; l 86.3 0.27 9.2E-06 41.5 1.8 40 185-226 180-224 (372)
154 2ra8_A Uncharacterized protein 86.0 0.12 4.3E-06 43.5 -0.4 35 187-222 278-317 (362)
155 1io0_A Tropomodulin; LRR prote 85.7 0.39 1.3E-05 36.1 2.3 39 186-226 91-136 (185)
156 1io0_A Tropomodulin; LRR prote 84.3 0.68 2.3E-05 34.7 3.1 41 184-226 61-106 (185)
157 2p1m_B Transport inhibitor res 83.3 0.42 1.4E-05 42.2 1.8 38 187-225 480-518 (594)
158 3ogk_B Coronatine-insensitive 82.4 1 3.5E-05 39.7 3.9 39 185-225 267-305 (592)
159 2p1m_B Transport inhibitor res 81.2 0.31 1.1E-05 43.1 0.1 36 186-222 154-194 (594)
160 1w5s_A Origin recognition comp 77.1 12 0.00042 31.0 8.8 111 5-134 240-370 (412)
161 2ra8_A Uncharacterized protein 74.6 1 3.5E-05 37.8 1.4 12 211-222 278-289 (362)
162 1hqc_A RUVB; extended AAA-ATPa 65.5 2.8 9.6E-05 33.9 2.1 35 100-134 289-324 (324)
163 4fdw_A Leucine rich hypothetic 55.4 6.3 0.00022 33.3 2.6 38 190-229 159-196 (401)
164 4fdw_A Leucine rich hypothetic 52.6 13 0.00045 31.3 4.1 44 184-230 319-362 (401)
165 2vda_B Maltoporin; sugar trans 52.0 7.5 0.00026 18.9 1.4 17 14-30 8-24 (28)
166 4h09_A Hypothetical leucine ri 40.7 73 0.0025 25.9 6.9 37 184-220 282-318 (379)
167 1pgv_A TMD-1, tropomodulin TMD 35.3 19 0.00064 27.4 2.1 35 187-222 97-136 (197)
168 3mg1_A OCP, orange carotenoid 34.5 45 0.0015 27.2 4.3 76 33-133 74-149 (323)
169 2kzc_A Uncharacterized protein 32.4 55 0.0019 21.2 3.7 48 92-146 9-57 (85)
170 4h09_A Hypothetical leucine ri 31.2 1.2E+02 0.0042 24.5 6.8 45 184-230 259-303 (379)
171 4gt6_A Cell surface protein; l 28.5 2E+02 0.007 23.4 7.7 38 184-222 330-367 (394)
172 3gva_A Alkyltransferase-like p 20.6 43 0.0015 23.1 1.6 24 2-30 24-47 (116)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.87 E-value=2.2e-23 Score=187.99 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=104.2
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHH--
Q 047834 3 QSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFL-- 80 (232)
Q Consensus 3 ~~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-- 80 (232)
+.+++++|+++|+|+||||+++|+.|+. ++ +.|. +.+.+..+... ...+.++|.+||++||++ +|.||+
T Consensus 315 ~~~~~~~I~~~c~GlPLAl~~~g~~l~~--~~-w~~~---~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~~-lk~~f~~L 385 (549)
T 2a5y_B 315 EEDVLNKTIELSSGNPATLMMFFKSCEP--KT-FEKM---AQLNNKLESRG--LVGVECITPYSYKSLAMA-LQRCVEVL 385 (549)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTCCS--SS-HHHH---HHHHHHHHHHC--SSTTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhcc--ch-HHHH---HHhHHHhhccc--HHHHHHHHhcccccccHH-HHHHHhcc
Confidence 4568999999999999999999999987 43 3333 33333222111 225888999999999999 799999
Q ss_pred ---------HhhhcCCCccccHHHHHHHHHHc--CCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHH
Q 047834 81 ---------FCALFLKNQLIRKDEHIDLWIGE--GLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDML 139 (232)
Q Consensus 81 ---------~~a~fp~~~~~~~~~li~~w~a~--g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli 139 (232)
|||+||+++.|+ +++|+|+ ||+.........++.++ +|++|+++||++. |||+|
T Consensus 386 s~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv 460 (549)
T 2a5y_B 386 SDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHII 460 (549)
T ss_dssp CHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHH
T ss_pred chhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHH
Confidence 999999999999 8999999 99987442344567777 9999999999974 99999
Q ss_pred HHHHHHHhccccC
Q 047834 140 RDLALWIASQDKG 152 (232)
Q Consensus 140 ~~~~~~i~~~e~~ 152 (232)
|++|+.++.+++.
T Consensus 461 ~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 461 HMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHTTSCTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.77 E-value=1.1e-18 Score=169.30 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=112.6
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCC-----CCCcchhhHHHHhHhcCCchhHHHH
Q 047834 4 SYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFP-----GMGDLIFPCLKFSYDHLSSETHRKC 78 (232)
Q Consensus 4 ~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~-----~~~~~i~~~l~~sy~~L~~~~~k~c 78 (232)
.+++++|+++|+|+||||+++|++|+. ++ ..|+..++++....+..- .....+..+|.+||+.||++ .|.|
T Consensus 307 ~~~~~~i~~~~~glPLal~~~~~~l~~--~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~ 382 (1249)
T 3sfz_A 307 PAEAHSIIKECKGSPLVVSLIGALLRD--FP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY 382 (1249)
T ss_dssp CTHHHHHHHHTTTCHHHHHHHHHHHHH--SS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHH
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHhhc--Ch-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHH
Confidence 467899999999999999999999998 33 579999999977654321 11135899999999999999 6999
Q ss_pred HHHhhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHHHHHHHHHhc
Q 047834 79 FLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDMLRDLALWIAS 148 (232)
Q Consensus 79 fl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli~~~~~~i~~ 148 (232)
|+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++. ||+++|++++....
T Consensus 383 ~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 383 YTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 9999999999999999999999654 4667899999999999985 99999999999877
Q ss_pred cc
Q 047834 149 QD 150 (232)
Q Consensus 149 ~e 150 (232)
++
T Consensus 451 ~~ 452 (1249)
T 3sfz_A 451 SQ 452 (1249)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.65 E-value=6.6e-16 Score=140.02 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=107.0
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCC-C----CCCCcchhhHHHHhHhcCCchhHHHH
Q 047834 4 SYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAE-F----PGMGDLIFPCLKFSYDHLSSETHRKC 78 (232)
Q Consensus 4 ~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~-~----~~~~~~i~~~l~~sy~~L~~~~~k~c 78 (232)
.+.+.+|+++|+|+||||+.+|+.|+. . ...|+.+++.+...... . ......+..++..||+.||++ .|.|
T Consensus 307 ~~~~~~i~~~~~G~PLal~~~a~~l~~--~-~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~ 382 (591)
T 1z6t_A 307 PEQAHSIIKECKGSPLVVSLIGALLRD--F-PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY 382 (591)
T ss_dssp CTHHHHHHHHHTTCHHHHHHHHHHHHH--S-TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHH
T ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHhc--C-chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHH
Confidence 457889999999999999999999988 3 34799999998865432 1 112236899999999999999 5999
Q ss_pred HHHhhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHHHHHHHHHh
Q 047834 79 FLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDMLRDLALWIA 147 (232)
Q Consensus 79 fl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli~~~~~~i~ 147 (232)
|+++|+||+++.|+.+.+..+|.++ .+.+..++++|+++||++. ||++++++++...
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999999999999999999999542 2456789999999999963 9999999998873
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.65 E-value=2e-16 Score=148.96 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=91.8
Q ss_pred hcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhH-HHHHHHhhhcCCCccc
Q 047834 13 ACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETH-RKCFLFCALFLKNQLI 91 (232)
Q Consensus 13 ~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~a~fp~~~~~ 91 (232)
.|+|+||||+++|+.|+.+..+...|+.. ....+..+|.+||+.||++ . |.||+|||+||+++.|
T Consensus 322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCE
T ss_pred HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCC
Confidence 39999999999999999832377888753 1236999999999999999 7 9999999999999999
Q ss_pred cHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh--------hHHHHHHHH
Q 047834 92 RKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE--------MHDMLRDLA 143 (232)
Q Consensus 92 ~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~--------mhdli~~~~ 143 (232)
+.+.++.+|+++| ++.++.++++|+++||++. |||++++++
T Consensus 388 ~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 388 PTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp EHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999887 1347889999999999974 999998855
No 5
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.04 E-value=1.3e-05 Score=60.86 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=39.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|+|++|.+..+|...|+++.+|++|||+++ +|+.+|++
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 99 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG 99 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHH
Confidence 456788899999988888888875688889999999988 88888875
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.94 E-value=2.6e-05 Score=58.92 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=39.4
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|+|++|.+..+|...|+++.+|++|+|+++ +|+.+|++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~ 96 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRG 96 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHH
Confidence 456788899999999888888876788999999999998 88888874
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.82 E-value=3e-05 Score=61.42 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+++|++|+|++|.+..+|.. ++++.+|++|+|+++ +++.+|+
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N-~l~~~~~ 152 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQN-QLKSIPH 152 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSS-CCCCCCT
T ss_pred cchhhCeEeccCCcccccCcc-cccCCCCCEEECCCC-cCCccCH
Confidence 445555555555555555555 555666666666665 5555553
No 8
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.80 E-value=6.5e-05 Score=56.76 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=34.5
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|++++|.+..+|...++++++|++|+++++ .++.+|++
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 118 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG 118 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHH
Confidence 45677788888887777777765677788888888887 77777764
No 9
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.77 E-value=3.6e-05 Score=64.54 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=43.1
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+..+++|++|+|++|.+..+|...|++|.+|++|||++. +|..+|+++
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~ 99 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKT 99 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHH
Confidence 567899999999999999888765899999999999999 999999753
No 10
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.72 E-value=3e-05 Score=58.75 Aligned_cols=46 Identities=33% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|++++|.+..+|..+++.+++|++|+++++ .+..+|+
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~ 105 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGD 105 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGG
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchh
Confidence 445566677777776666666553466666777777766 6666654
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.72 E-value=6.8e-05 Score=57.83 Aligned_cols=47 Identities=28% Similarity=0.539 Sum_probs=38.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|+|++|.+..+|...|+++++|++|+|+++ .|+.+|++
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~ 120 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEG 120 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTT
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChh
Confidence 456788888888888888887755888888888888888 88888864
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.71 E-value=5.9e-05 Score=59.36 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|.+..+|...|+++.+|++|+|+++ +++.+|+
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~ 121 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRV 121 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCH
Confidence 445667777777777777777765677777777777777 7776653
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.71 E-value=9.6e-05 Score=58.13 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=34.0
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|+|++|.+..++...|+++++|++|+|+++ +++.+|+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 146 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKG 146 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHH
Confidence 45677888888888777775444777888888888888 77777753
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.70 E-value=9.7e-05 Score=58.43 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=42.0
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+..+++|++|+|++|.+..+|...++.+.+|++|+|+++ +++.+|+++
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 131 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGI 131 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTG
T ss_pred cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCccc
Confidence 356789999999999999998876789999999999999 999998753
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.70 E-value=0.00011 Score=56.94 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=22.0
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+++|++|++++|.+..+|...++++++|++|+++++ .++.+|+
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 141 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD 141 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCH
Confidence 3445555555555555544443445555555555555 5554443
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.68 E-value=0.00011 Score=59.54 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=21.8
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+++|++|++++|.+..+|...++++++|++|+++++ +++.+|+
T Consensus 132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 174 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE 174 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCH
Confidence 445555555555555554443445555555555555 5554443
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.68 E-value=9.8e-05 Score=59.86 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|++++|.+..+|...++++++|++|+++++ +++.+|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 151 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG 151 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHH
Confidence 45667777777777777776665677777777777777 77777653
No 18
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.60 E-value=8.4e-05 Score=56.15 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=42.3
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|++++|.+..+|...++++.+|++|+++++ +++.+|+.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 94 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG 94 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHH
Confidence 356789999999999999999886799999999999999 99999874
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.59 E-value=0.00017 Score=53.93 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=28.3
Q ss_pred CCCCCCccEEEeccCCCCC-CChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKG-LPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~-lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+..+++|++|++++|.+.. +|.. ++++++|++|+++++ .++.+|
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~ 111 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHLNLSGN-KLKDIS 111 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEEECBSS-SCCSSG
T ss_pred hccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEEeccCC-ccCcch
Confidence 4455667777777776665 5554 566677777777776 666655
No 20
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.59 E-value=3.8e-05 Score=71.25 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+..+++|++|+|++|.+..+|.+ |++|.+|++|+|+++ .|..+|++|
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N-~l~~lp~~~ 312 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDN-MVTTLPWEF 312 (727)
T ss_dssp GGGGTTCCEEECTTSCCSSCCSS-GGGGTTCSEEECCSS-CCCCCCSST
T ss_pred hhCCCCCCEEeCcCCcCCccChh-hcCCCCCCEEECCCC-CCCccChhh
Confidence 34567788888888888888888 788888888888888 888888754
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.58 E-value=0.00012 Score=58.51 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=30.0
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|+|++|.+..+|...++++.+|++|+|+++ +++.+|+
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 148 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA 148 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCH
Confidence 34566677777776666666654566777777777777 6666665
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.57 E-value=2.5e-05 Score=65.34 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=45.8
Q ss_pred ccccceeEec----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 174 WNKAVRVSLS----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 174 ~~~~~~lsl~----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
...++.+.+. +..+++|++|+|++|.+..+|.. +++|.+|++|++++|..+..+|.++
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhH
Confidence 4455555555 34578899999999988899998 8999999999999986777888753
No 23
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.56 E-value=0.00024 Score=55.82 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
.+++|++|+|++|.+..+|...|+++++|++|+|+++ +++.+
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 120 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCV 120 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCB
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeE
Confidence 3445555555555555444443445555555555555 44444
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.54 E-value=0.00019 Score=58.92 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=31.7
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|+|++|.+..+|...+.++.+|++|+|+++ +++.+|++
T Consensus 121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 166 (290)
T 1p9a_G 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG 166 (290)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT
T ss_pred cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHH
Confidence 44567777777777777776665667777777777777 77777654
No 25
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.54 E-value=9.8e-05 Score=66.52 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=35.6
Q ss_pred ceeeccccccccccceeEec----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 164 KLIIDQQSVTWNKAVRVSLS----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 164 ~~~~~~~~~~~~~~~~lsl~----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
.....|.......++.+.+. +..+++|++|+|++|.++.+| + +++|++|++|||+++ +|+.+
T Consensus 452 ~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-l~~l~~L~~L~Ls~N-~l~~~ 523 (567)
T 1dce_A 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G-VANLPRLQELLLCNN-RLQQS 523 (567)
T ss_dssp CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSS-CCCSS
T ss_pred CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c-cCCCCCCcEEECCCC-CCCCC
Confidence 33334444444455555554 334556666666666666666 4 666666666666666 66665
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.53 E-value=0.00014 Score=59.63 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=49.6
Q ss_pred cccccceeEec-----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 173 TWNKAVRVSLS-----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 173 ~~~~~~~lsl~-----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
....++.+.+. +..+++|++|+|++|.++.+|..++.++.+|++|+|+++ .++.+|+++
T Consensus 122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~ 191 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGF 191 (290)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhh
Confidence 34456666655 356789999999999999999986789999999999999 999999864
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.53 E-value=0.00011 Score=56.94 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=36.0
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|++++|.+..+|...++++++|++|+++++ +++.+|++
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 118 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDG 118 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHh
Confidence 45678888888888888887765678888888888888 88877764
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.53 E-value=8e-05 Score=62.24 Aligned_cols=44 Identities=30% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCCCccEEEeccC-CCCCCChHhhcC---------CCCccEEEccCCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYA-SMKGLPEWFFQS---------MPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 186 ~l~~Lr~L~l~~~-~l~~lp~~~i~~---------L~~Lr~LdL~~~~~l~~LP~s 231 (232)
.+++|++|++++| .+..+|.. ++. +++|++|+|+++ +++.+|++
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~ 201 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS 201 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG
T ss_pred cCcCCCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCC-CcCcchHh
Confidence 4456666666665 34455555 433 666666666666 66666543
No 29
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.53 E-value=4.5e-05 Score=70.75 Aligned_cols=47 Identities=32% Similarity=0.377 Sum_probs=43.3
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+..+++|++|+|++|.+..+|.+ |++|.+|++|||+++ +|+.+|++|
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~ 289 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAEL 289 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSG
T ss_pred hcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhh
Confidence 44678999999999999999999 899999999999999 999999865
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.52 E-value=0.00013 Score=62.14 Aligned_cols=44 Identities=34% Similarity=0.582 Sum_probs=20.3
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+++|++|++++|.+..+|...++++++|++|+++++ .++.+|.
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 134 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR 134 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCH
Confidence 3444444444444444443333444444444444444 4444443
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.52 E-value=0.00023 Score=57.57 Aligned_cols=43 Identities=33% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+++|++|++++|.+..+|...++++++|++|+++++ .++.+|.
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 126 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPP 126 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCH
Confidence 445555555555555555443455555555555555 5554443
No 32
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.52 E-value=0.0001 Score=55.90 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=39.2
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
++|++|+|++|.+..+|...|+++++|++|+|+++ +|+.+|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~ 75 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTG 75 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChh
Confidence 78999999999999986544999999999999999 99999975
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.50 E-value=0.00026 Score=56.55 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=44.7
Q ss_pred ccccceeEec-----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 174 WNKAVRVSLS-----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 174 ~~~~~~lsl~-----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
...++.+.+. +..+++|++|+|++|.+..+|...++++++|++|||+++ +++.+|+.
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 173 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG 173 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHH
Confidence 4455666555 355788999999999988888854888999999999999 88888863
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.50 E-value=5.6e-05 Score=67.88 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=29.9
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|+++.+|...|++|.+|++|+|+++ +++.+|+
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 141 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN 141 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTT
T ss_pred hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCCh
Confidence 345566666666666666666554666677777777766 6666664
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.48 E-value=0.00031 Score=58.96 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=38.6
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|++++|.+..+|...++++++|++|+++++ .++.+|.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 141 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGE 141 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCS
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCc
Confidence 456788888999888888888876788888999999888 8888876
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.46 E-value=0.00018 Score=64.90 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=25.2
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|+|++|.+..+|..+|+++++|++|+|+++ .+..+|+
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 164 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIED 164 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCCh
Confidence 34555556666555555555553455566666666655 5555543
No 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.44 E-value=0.00024 Score=55.78 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|.+..++...|+++.+|++|+|+++ +++.+|+
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 146 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAP 146 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCT
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECH
Confidence 456788999999999888874433888999999999999 8888843
No 38
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.44 E-value=0.00023 Score=52.03 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=26.5
Q ss_pred CCCCCCccEEEeccCCCCC-CChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKG-LPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~-lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+..+++|++|++++|.+.. +|.. ++++++|++|+++++ .++.+|
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~ls~N-~i~~~~ 104 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHLNLSGN-KIKDLS 104 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEEECTTS-CCCSHH
T ss_pred hhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEEECCCC-cCCChH
Confidence 3445666666666666665 4444 555666666666666 565543
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.44 E-value=0.00017 Score=55.44 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=25.8
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
..+++|++|+|++|.+..+|...|+++++|++|||+++ +++.+
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 117 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCV 117 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEE
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCee
Confidence 34556666666666666555544566666666666666 66544
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.44 E-value=0.00016 Score=64.90 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=26.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|.++.+|+..|++|++|++|||+++ +|+.+|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 344556666666666666555443566666666666666 5665554
No 41
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.40 E-value=0.00017 Score=54.30 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=39.5
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
.++|++|+|++|.+..++...|++|.+|++|||+++ +|+.+|++
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 72 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG 72 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChh
Confidence 378999999999999995554999999999999999 99999975
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.39 E-value=0.00044 Score=55.81 Aligned_cols=45 Identities=27% Similarity=0.485 Sum_probs=29.5
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|++++|.+..+|...++++++|++|+|+++ .++.+|+
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 174 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE 174 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeCh
Confidence 34566666666666666666654566677777777776 6666664
No 43
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.37 E-value=0.00015 Score=55.84 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=40.7
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|+|++|.+..+|...|.+|.+|++|+|+++ +|+.+|+.
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~ 96 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPR 96 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTT
T ss_pred hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHH
Confidence 446789999999999999988765899999999999999 99988863
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.37 E-value=0.00019 Score=59.70 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=40.7
Q ss_pred CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+..+++|++|++++|.+..+ |.. ++++++|++|+++++ .++.+|.++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~~~ 119 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKN-QLKELPEKM 119 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred hccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCC-cCCccChhh
Confidence 45788999999999999887 666 899999999999999 999998753
No 45
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.36 E-value=0.00014 Score=54.99 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=46.9
Q ss_pred cccccccceeEec-----------CCCCCCccEEEeccCCCCCCCh--HhhcCCCCccEEEccCCCCCCCCCC
Q 047834 171 SVTWNKAVRVSLS-----------PPSCPRLLTLLVRYASMKGLPE--WFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 171 ~~~~~~~~~lsl~-----------~~~l~~Lr~L~l~~~~l~~lp~--~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
......++.+.+. +..+++|++|++++|.+..+|. . ++++++|++|+++++ .+..+|.
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~l~~N-~i~~~~~ 130 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN-PVTNKKH 130 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSS-GGGGSTT
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHh-hhcCCCCCEEEecCC-CCCCcHh
Confidence 3344455555555 2457899999999999999998 6 899999999999999 9988886
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.34 E-value=0.00016 Score=63.75 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|++++|.+..+ |+. |+++++|++|||+++ +++.+|.
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~ 86 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHN-KLVKISC 86 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSS-CCCEEEC
T ss_pred ccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCC-ceeecCc
Confidence 34567778888887777776 445 777788888888877 7777765
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.24 E-value=0.00045 Score=62.06 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+..+++|++|+|++|.+..+ |.. |+++.+|++|++++| .+..+|
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~ 120 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVET-KLASLE 120 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTS-CCCCSS
T ss_pred hhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCC-cccccc
Confidence 34567777777777777766 555 777777777777777 777666
No 48
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.24 E-value=0.00016 Score=54.02 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=30.9
Q ss_pred CCCCCccEEEeccCCCCCCCh---HhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPE---WFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~---~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|++++|.+..+|. ..++.+++|++||++++ .+.++|++
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 455667777777777666665 22677777777777777 77777654
No 49
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.24 E-value=0.00015 Score=65.37 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=40.5
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+..+++|++|+|++|.+..+|.+ +++|++|++|||+++ +|+.+|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp 502 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD 502 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred ccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc
Confidence 45677999999999999999999 999999999999999 999988
No 50
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.23 E-value=0.00019 Score=55.15 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=39.7
Q ss_pred CCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|+|++|.+..+ |.. |+++.+|++|+|+++ +|+.+|..
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~ 96 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGEN-KIKEISNK 96 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSS
T ss_pred ccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCC-cCCccCHH
Confidence 4678999999999999988 556 999999999999999 99988764
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.21 E-value=0.00038 Score=62.21 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=33.3
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|.+..++...|+++++|++|||+++ +++.+|.
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 117 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISC 117 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECS
T ss_pred hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCc
Confidence 456677888888888777764333777888888888887 7777775
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.20 E-value=0.00033 Score=58.23 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=36.2
Q ss_pred CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
+..+++|++|++++|.+..+ |.. ++++++|++|+++++ .++.+|.++
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~ 121 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKN-HLVEIPPNL 121 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSS-CCCSCCSSC
T ss_pred hhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCC-cCCccCccc
Confidence 45677888888888888776 445 788888888888888 888887653
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.19 E-value=0.00032 Score=58.10 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=40.0
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
..+++|++|++++|.+..+|.. ++.+++|++|||+++ .++.+|+.+
T Consensus 188 ~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N-~l~~l~~~~ 233 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKAL 233 (317)
T ss_dssp CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEECTTC
T ss_pred cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCC-cccchhhHh
Confidence 3478999999999999999998 889999999999999 998888753
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.19 E-value=0.00064 Score=61.04 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=22.6
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
..+++|++|++++|.+..+|...++++.+|++|+++++ .+.
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 141 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIH 141 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-ccc
Confidence 34555666666666555555222555666666666665 554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.18 E-value=0.00056 Score=59.23 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=34.4
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|++++|.+..++...|+++++|++|||+++ +++.+|.+
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTT
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChh
Confidence 455677777777777777665554777888888888888 88877764
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.17 E-value=0.0007 Score=56.40 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=36.8
Q ss_pred cccccccceeEec---------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 171 SVTWNKAVRVSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 171 ~~~~~~~~~lsl~---------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
......++.+.+. +..+++|++|++++|.+..+|. ++++++|++|+++++ .+..+|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~ 126 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDIS 126 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCG
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCch
Confidence 3344455555554 3456777777777777777653 677777777777777 666665
No 57
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.17 E-value=0.00097 Score=56.27 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=34.6
Q ss_pred CCCCCCccEEEeccCCCCCCChHhh---cCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFF---QSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i---~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|.+..+|..++ +++.+|++|||+++ +|+.+|.
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~ 180 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL 180 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCH
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCH
Confidence 4567788888888888888888744 56888888888888 8887773
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.16 E-value=0.00049 Score=52.89 Aligned_cols=42 Identities=12% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCCCCccEEEeccCC-CCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYAS-MKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~-l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
..+++|++|++++|. +..+| . ++++++|++|++++| .+..+|
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTB-CCCCCT
T ss_pred hhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCC-CCcChH
Confidence 344555555555554 55554 2 555555555555555 554443
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.16 E-value=0.00083 Score=60.59 Aligned_cols=45 Identities=33% Similarity=0.572 Sum_probs=23.5
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|+|++|.+..+|...|+++++|++|+|+++ .+..+|+
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 140 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR 140 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCH
Confidence 34455555555555555554443455555555555555 5555554
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.15 E-value=0.00054 Score=57.83 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|+|++|.+..++...|++|.+|++|+|+++ +|..+|.+
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 154 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE 154 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence 456778888888888887774433888888888888888 88888754
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.15 E-value=0.0004 Score=56.07 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=26.9
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+++|++|++++|.+..+|. ++++++|++|+|+++ +++.+|.
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~ 102 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNG 102 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTT
T ss_pred hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCc
Confidence 45566666666666666665 566666666666666 6666554
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.13 E-value=0.0006 Score=56.57 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|++++|.+..+|.. ++.+++|++|+++++ .++.+|.
T Consensus 237 ~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp GGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSS-CCCCCCT
T ss_pred cCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCC-cCCccCh
Confidence 3456778888888877788877 777888888888888 7777765
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.13 E-value=0.00059 Score=55.39 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+++|++|++++|.+..+|...++++++|++|+++++ +++.+|
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 169 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVP 169 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEEC
T ss_pred CcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccC
Confidence 344444444444444444433444444444444444 444444
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.12 E-value=0.00056 Score=59.41 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=26.7
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|+|++|.+..+|...++++++|++|+|+++ .++.+|.
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 164 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPS 164 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECT
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCH
Confidence 34556666666666666665554556666666666666 5555554
No 65
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.11 E-value=0.00042 Score=50.58 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=38.3
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC-CC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK-LP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~-LP 229 (232)
+..+++|++|++++|.+..+ .. ++++++|++|+++++ .+.. +|
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~ 81 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLE 81 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTH
T ss_pred HhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccchHH
Confidence 46789999999999999988 55 999999999999999 8887 54
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.11 E-value=0.00081 Score=58.65 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
.+++|++|+|++|.+..+|...|+++.+|++|||+++ .+..+
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~ 119 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVIL 119 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccccC
Confidence 4455555555555555555443455555555555555 44443
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.10 E-value=0.00093 Score=55.12 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=20.5
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
.+++|++|++++|.+..+|. ++++++|++|+++++ .+..+|
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~ 145 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN-QITNIS 145 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCcCc
Confidence 34455555555555554443 455555555555555 444443
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.10 E-value=0.00082 Score=57.06 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=31.5
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+++|++|++++|.+..+|...++++++|++|+++++ .+..+|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~ 158 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIED 158 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccCh
Confidence 45667777777777777777764577777777777777 6666654
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.04 E-value=0.00093 Score=58.04 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=33.1
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|++++|.+..++...|+++++|++|||+++ +++.+|..
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 284 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHD 284 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChH
Confidence 445667777777777776654444777788888888888 77777754
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.02 E-value=0.0012 Score=54.05 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
..+++|++|++++|.+..+|. ++++++|++|+++++ .++.+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~~--l~~l~~L~~L~l~~n-~l~~~ 149 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN-KITDI 149 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCC
T ss_pred ccCCCCCEEECCCCcCCCChh--hcCCCCCCEEEccCC-cCCcc
Confidence 344556666666665555533 555666666666666 55544
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.02 E-value=0.00086 Score=51.46 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=35.5
Q ss_pred CCCCCCccEEEeccCCCCC-CChHhhcCCCCccEEEccCCCC-CCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKG-LPEWFFQSMPALRVLEWSRNGD-LTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~-lp~~~i~~L~~Lr~LdL~~~~~-l~~LP 229 (232)
+..+++|++|++++|.+.. .|.. ++++++|++|++++| . +..+|
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n-~~i~~~~ 153 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYN-GAITDIM 153 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSC-TBCCCCG
T ss_pred hcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCC-CCccccH
Confidence 5567889999999988875 5666 888999999999998 6 77765
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.02 E-value=0.0015 Score=56.50 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=20.8
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
.+++|++|+|++|.+..+|...|+++++|++|+|+++ .++.+|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 152 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIP 152 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEEC
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccC
Confidence 3444555555555444444433445555555555555 444444
No 73
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.00 E-value=0.00033 Score=58.00 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=26.5
Q ss_pred CCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCC
Q 047834 185 PSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPM 230 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~ 230 (232)
..+++|++|++++|.+. .+|.. ++++++|++|+++++ .+. .+|.
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~ 167 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISGAIPD 167 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEEECCG
T ss_pred hCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCC-cccCcCCH
Confidence 34566666666666555 55665 666666666666666 555 4554
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.99 E-value=0.0014 Score=58.08 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=34.5
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
+..+++|++|++++|.+..+|...|+++++|++||++++ .++.+
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 113 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTL 113 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSS
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-ccccc
Confidence 456778888888888888777766788888888888888 77754
No 75
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.96 E-value=0.00081 Score=58.13 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
..+++|++|+|++|.+..+ |.. |+++.+|++|+|++| +++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~ 116 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGA-FNGLANLEVLTLTQC-NLD 116 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTT-TTTCTTCCEEECTTS-CCB
T ss_pred cccccCCEEeCCCCccCccChhh-ccCcccCCEEeCCCC-CCC
Confidence 3445555555555555544 334 555566666666655 444
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.96 E-value=0.00083 Score=59.68 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=31.1
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|.+..+|...|+++.+|++|+++++ +++.+|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 117 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN 117 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTT
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCC
Confidence 345667777777777776666433777777777777777 7776664
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.96 E-value=0.00066 Score=59.84 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=45.8
Q ss_pred cccceeEec---------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 175 NKAVRVSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 175 ~~~~~lsl~---------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
..++.+.+. ...+++|++|+|++|.+..+|.+ ++.+++|++|||+++ .+..+|+++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~l 233 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKAL 233 (487)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEECTTC
T ss_pred CcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcccchhh
Confidence 455555554 34578999999999999999998 889999999999999 999888753
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.96 E-value=0.00087 Score=58.46 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=26.2
Q ss_pred CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|+|++|.+..+ |.. |+++++|++|+|+++ +++.+|.
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSS-CCCSCCT
T ss_pred ccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCC-cCCccCc
Confidence 34455666666666665554 334 566666666666666 5666554
No 79
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.95 E-value=0.00051 Score=57.43 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=40.7
Q ss_pred CCCCCccEEEecc-CCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~-~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+.+|++|+|++ |.+..+|...|++|.+|++|||+++ +|+.+|+.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 74 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD 74 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH
Confidence 4667899999997 8999999655999999999999999 99988864
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.94 E-value=0.0015 Score=52.70 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=17.2
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
+++|++|++++|.+..++...++++++|++|+++++ .++.
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 138 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQS 138 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccce
Confidence 344444444444444443311444444444444444 4443
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.93 E-value=0.00066 Score=56.40 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+++|++|++++|.+..+|.. ++++++|++|+++++ .++.+|.
T Consensus 239 ~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSS-CCCBCCT
T ss_pred CCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCC-CCCccCh
Confidence 456777777777777777777 677777777777777 7777664
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.91 E-value=0.0014 Score=53.67 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
.+++|++|++++|.+..+|. ++++++|++|+++++ .++.+|
T Consensus 154 ~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCG
T ss_pred cCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cCCCCh
Confidence 34555555555555555554 455555555555555 555443
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.91 E-value=0.0018 Score=53.41 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
..+++|++|++++|.+..+|. ++++++|++|+++++ .++.+|
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~ 167 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA-QVSDLT 167 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG
T ss_pred cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCC-cCCCCh
Confidence 344556666666665555554 555666666666665 555544
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.89 E-value=0.0012 Score=61.96 Aligned_cols=42 Identities=24% Similarity=0.160 Sum_probs=25.2
Q ss_pred CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
+..+++|++|+|++|.+..+ |+. |+++.+|++|||++| .+..
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~n-~l~~ 111 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFC-GLSD 111 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCCEECTTC-CCSS
T ss_pred hcCCCCCCEEECCCCcCcccCHhH-ccCCcccCEeeCcCC-CCCc
Confidence 34456666666666666554 444 666666666666666 5553
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.89 E-value=0.001 Score=59.15 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=33.7
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC--CCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK--LPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~--LP~s 231 (232)
+..+++|++|++++|++..+|...++++++|++|+++++ .++. +|++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~ 144 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY 144 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh
Confidence 456677888888888777777633777888888888887 7764 5553
No 86
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=96.88 E-value=0.0013 Score=53.39 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=33.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|++++|.+..++...++++++|++|+++++ .++.+|.+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 147 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDD 147 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHh
Confidence 345677888888888777765444777888888888888 77777653
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.87 E-value=0.0011 Score=60.38 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+++|++|+|++|.+..+|...|+++.+|++|+++++ ++..+|+
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~ 114 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKN 114 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCS
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccCh
Confidence 4577888888888887777744778888888888888 7777764
No 88
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.87 E-value=0.0011 Score=57.18 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=27.8
Q ss_pred CCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
..+++|++|++++|.+..+ |.. ++++++|++|+|+++ +++.+|.+
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQS-FLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCcccCCEEECCCCcccccChhh-ccccccccEEECCCC-ccccCCHh
Confidence 4456666666666666655 344 666666666666666 66666653
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.82 E-value=0.00074 Score=54.51 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|++++|.+..+|...++++.+|++|+++++ ++..+|.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 117 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN 117 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTT
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCc
Confidence 344566777777777666665433666777777777776 6666554
No 90
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=96.76 E-value=0.0011 Score=55.63 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=40.6
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|++++|.+..++...|+++++|++||++++ +++.+|.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence 567899999999999999886544999999999999999 9998885
No 91
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.76 E-value=0.00032 Score=58.09 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=34.9
Q ss_pred CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s 231 (232)
+..+++|++|++++|.+. .+|.. ++++++|++|||+++ .+. .+|++
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~ 144 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPS 144 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGG
T ss_pred HhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChH
Confidence 345678888888888776 77777 788888888888888 776 55643
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.74 E-value=0.00098 Score=54.89 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=18.9
Q ss_pred CCccEEEeccCCCCCC-ChHhhcCC---CCccEEEccCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGL-PEWFFQSM---PALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~l-p~~~i~~L---~~Lr~LdL~~~~~l~~LP~ 230 (232)
++|++|+|++|.+..+ |+. ++.+ ++|++|+|+++ +++.+|.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp~ 268 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFA-GLEQVPK 268 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSS-CCCSCCS
T ss_pred CCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCC-CCCchhh
Confidence 4444444444444443 443 3333 34555555555 4444444
No 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.74 E-value=0.0017 Score=54.03 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=27.6
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
..+++|++|++++|.+...+...++++++|++|++++| .++.+|
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~ 327 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIR 327 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCG
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-cccccc
Confidence 34566666666666666544433666777777777777 666554
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.74 E-value=0.00098 Score=59.04 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=24.7
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
.+++|++|++++|.+..+|.. ++.+++|++|+++++ .++.+|.
T Consensus 385 ~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N-~l~~l~~ 427 (549)
T 2z81_A 385 TLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSST-GIRVVKT 427 (549)
T ss_dssp GCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTS-CCSCCCT
T ss_pred cCCCCCEEECCCCCCccCChh-hcccccccEEECCCC-Ccccccc
Confidence 345556666666655556655 555556666666665 5555544
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.73 E-value=0.0026 Score=55.36 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
.+++|++|++++|.+..+|. ++++++|++|++++| .++.+|
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 128 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDID 128 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred ccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCCh
Confidence 44555555555555555554 455555555555555 555444
No 96
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.73 E-value=0.00018 Score=55.37 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=22.1
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+++|++|++++|.+..+|.. ++.+++|++|+++++ ++..+|
T Consensus 69 l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~ 109 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS 109 (198)
T ss_dssp HTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH
T ss_pred CCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC
Confidence 34555555555555555554 455555555555555 554443
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.70 E-value=0.0013 Score=52.00 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCCCccEEEecc-CCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 186 SCPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 186 ~l~~Lr~L~l~~-~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
.+++|++|++++ +.++.+|...|+++++|++|+++++ .++.+|
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp 121 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFP 121 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCC
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCcccc
Confidence 344555555554 4555554332455555555555555 555554
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.64 E-value=0.0018 Score=53.35 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=17.6
Q ss_pred CCccEEEeccCCCCCCC-hHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLP-EWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp-~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
++|++|++++|.+...+ ...+..+.+|++|||+++ .++.+|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~ 270 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK 270 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhh
Confidence 34444444444444322 111333444444444444 4444444
No 99
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.64 E-value=0.0011 Score=60.22 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=15.3
Q ss_pred CCCccEEEeccCCC-CCCChHhhcCCCCccEEEccCC
Q 047834 187 CPRLLTLLVRYASM-KGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 187 l~~Lr~L~l~~~~l-~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
+++|++|++++|.+ ..+|++ +++|++|++||++++
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTC
T ss_pred cCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCC
Confidence 34444444444432 234444 444444444444444
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.63 E-value=0.00079 Score=53.17 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=21.9
Q ss_pred CCCCccEEEeccCC-CCCCChHhhcCCCCccEEEccC-CCCCCCCC
Q 047834 186 SCPRLLTLLVRYAS-MKGLPEWFFQSMPALRVLEWSR-NGDLTKLP 229 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~-l~~lp~~~i~~L~~Lr~LdL~~-~~~l~~LP 229 (232)
.+++|++|++++|+ +..+|...|+++++|++|++++ . +++.+|
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~ 97 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYID 97 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEEC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcC
Confidence 44555555555553 5555542245555555555555 3 555444
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.61 E-value=0.0045 Score=49.80 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=21.4
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
.+++|++|++++|.+..+| . ++.+++|++|+++++ .+..+
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~-~-l~~l~~L~~L~L~~N-~i~~~ 165 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIV-M-LGFLSKLEVLDLHGN-EITNT 165 (263)
T ss_dssp TCTTCCEEECTTSCCCBCG-G-GGGCTTCCEEECTTS-CCCBC
T ss_pred CcccccEEECCCCcCCCCh-H-HccCCCCCEEECCCC-cCcch
Confidence 4455555555555555554 2 555555555555555 55443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.61 E-value=0.0025 Score=57.82 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=26.9
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
+..+++|++|+|++|.+..+|. ++.|++|+.|+|++| .+..+
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~l 146 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN-KITDI 146 (605)
T ss_dssp STTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSS-CCCCC
T ss_pred hccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCC-ccCCc
Confidence 3445666667776666666643 666677777777766 66554
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.61 E-value=0.0027 Score=59.98 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCC-ccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPA-LRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~-Lr~LdL~~~~~l~~LP~s 231 (232)
+..+++|++|+|++|.+..+|.+ ++++.+ |++|+|+++ .+..+|+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N-~L~~lp~~ 637 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHN-KLKYIPNI 637 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSS-CCCSCCSC
T ss_pred hcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCC-CCCcCchh
Confidence 44567788888888877788877 777877 888888888 77777764
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.59 E-value=0.0029 Score=57.40 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=24.7
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
..+++|++|+|++|.+..++. ++.|.+|+.|+|++| .|..+|
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~i~~l~ 191 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLR 191 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCG
T ss_pred cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-CCCCCh
Confidence 345566666666666655555 556666666666666 555554
No 105
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.58 E-value=0.0017 Score=59.01 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=28.0
Q ss_pred CccEEEeccCCCCCCChHhhc--CCCCccEEEccCCCCCCCCCCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQ--SMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~--~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+|++|+|++|.+..+|.. +. .+++|++|||+++ +++.+|.+
T Consensus 489 ~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~ip~~ 531 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDD-FRATTLPYLVGIDLSYN-SFSKFPTQ 531 (636)
T ss_dssp GCCEEECCSSCCCBCCGG-GSTTTCTTCCEEECCSS-CCSSCCCG
T ss_pred CccEEECcCCcCCccChh-hhhccCCCcCEEECCCC-CCCCcChh
Confidence 667777777766677766 54 6777777777777 66666654
No 106
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.57 E-value=0.004 Score=50.87 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
+..+++|++|++++|.+..+|...++.+++|++||++++ .+...
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 238 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTS 238 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBC
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCccc
Confidence 344566666777666666665533666667777777766 55543
No 107
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.52 E-value=0.0027 Score=57.84 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=30.0
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
.+++|++|+|++|.+..+|...|+++.+|++|||+++ +++.+|++
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 578 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPAS 578 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHh
Confidence 3456666677666666676644667777777777777 77776654
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.52 E-value=0.0056 Score=53.40 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
..+++|++|++++|.+..+| ++++++|++||++++ +++.+|
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~ 122 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD 122 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC
T ss_pred ccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec
Confidence 34455555555555555553 455555555555555 555443
No 109
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.52 E-value=0.002 Score=52.64 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=36.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+++|++|++++|.+..++...++++++|++|+|+++ .+..+|.
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 216 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT 216 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCS
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccCh
Confidence 456788888888888888774333888888999999888 8887765
No 110
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.49 E-value=0.0022 Score=59.64 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=31.4
Q ss_pred CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s 231 (232)
+..+++|++|+|++|.+. .+|++ +++|++|++|||+++ ++. .+|++
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N-~l~g~ip~~ 699 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSN-KLDGRIPQA 699 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS-CCEECCCGG
T ss_pred HhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCC-cccCcCChH
Confidence 345667777777777666 67777 777777777777777 666 55543
No 111
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.49 E-value=0.0026 Score=56.00 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=39.2
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
++|++|++++|.+..+|.. +.++++|++||++++ +++.+|.+
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred ccCCEEECCCCcccccchh-hhcCCCCCEEECCCC-cCCccCHH
Confidence 6999999999999999999 779999999999999 99999975
No 112
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.43 E-value=0.0019 Score=53.27 Aligned_cols=37 Identities=27% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDL 225 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l 225 (232)
++|++|++++|.+..+|...++++++|++||++++ ++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 185 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN-PE 185 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC-TT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC-Cc
Confidence 67777777777777776333777777777777777 53
No 113
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.40 E-value=0.0024 Score=60.41 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=28.2
Q ss_pred CccEEEeccCCCCCCChHhhc--CCCCccEEEccCCCCCCCCCCC
Q 047834 189 RLLTLLVRYASMKGLPEWFFQ--SMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 189 ~Lr~L~l~~~~l~~lp~~~i~--~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+|++|+|++|++..+|.. +. .+++|+.|||+++ ++..+|.+
T Consensus 729 ~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N-~L~~lp~~ 771 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYN-CFSSFPTQ 771 (876)
T ss_dssp GCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSS-CCSSCCCG
T ss_pred CccEEECCCCCCccchHH-hhhccCCCcCEEEeCCC-CCCccchh
Confidence 677777777766677776 54 6777777777777 67666654
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.38 E-value=0.0032 Score=54.80 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=45.1
Q ss_pred cccccccceeEec---------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 171 SVTWNKAVRVSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 171 ~~~~~~~~~lsl~---------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
......++.+.+. +..+++|++|++++|.+..+|. ++++++|++|+++++ .+..+|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCG
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCCh
Confidence 4444566666655 4578899999999999999987 899999999999999 777765
No 115
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.36 E-value=0.0011 Score=54.53 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=32.3
Q ss_pred CCCCCccEEEeccCCCCCCChH---hhcCCCCccEEEccCCCCCCCC-CCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEW---FFQSMPALRVLEWSRNGDLTKL-PMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~---~i~~L~~Lr~LdL~~~~~l~~L-P~s 231 (232)
..+++|++|++++|+++.+|.. +++++++|++|||+++ .+..+ |++
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~ 243 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS 243 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh
Confidence 3566777777777777666653 3567788888888888 77766 654
No 116
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.34 E-value=0.0033 Score=56.03 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=39.0
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
++|++|++++|.++.+|.. +.++++|++|||+++ +++.+|++
T Consensus 450 ~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSS-CCCCCCTT
T ss_pred CcCCEEECCCCcCcccChh-hcCCCCCCEEECCCC-CCCCCCHH
Confidence 6899999999999999999 679999999999999 99999975
No 117
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.33 E-value=0.0035 Score=56.21 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=16.6
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
+++|++|++++|.+..++...++++++|++|+++++ .+..
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~ 143 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISS 143 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCC
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCC-cccc
Confidence 344444444444444432111444444444444444 4443
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.29 E-value=0.0099 Score=51.80 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=32.6
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
..+|++|++++|.+..+| + ++++++|++|+++++ .++.+|+
T Consensus 172 ~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N-~l~~l~~ 212 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNN-SLKKLPD 212 (454)
T ss_dssp CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSSCCC
T ss_pred cccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCC-cCCcCCC
Confidence 357888888888888887 4 788888888888888 8887775
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.28 E-value=0.0038 Score=54.47 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=36.6
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
++|++|++++|.+..+| + ++++.+|++|+++++ +++.+|+.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~ 171 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDL 171 (454)
T ss_dssp TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCC
T ss_pred CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCC
Confidence 68999999999999999 5 899999999999999 89988864
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.28 E-value=0.0025 Score=53.39 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=35.4
Q ss_pred CCCCCccEEEeccC-CCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
....+|+.|++.++ .++.+|...|+++.+|++|||+++ +|+.+|++
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh
Confidence 34457788888754 788888765788888888888888 88888864
No 121
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=96.24 E-value=0.0039 Score=51.45 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=43.3
Q ss_pred ccccceeEec----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834 174 WNKAVRVSLS----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 174 ~~~~~~lsl~----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
...++.+.+. +..+++|++|++++|.+..+|.. ++.+++|++|+++++ .+.
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N-~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN-GFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTC-CCB
T ss_pred cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCC-Ccc
Confidence 4556666655 45678999999999999999999 899999999999999 776
No 122
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.22 E-value=0.0048 Score=57.94 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=18.7
Q ss_pred CCCCCccEEEeccC-CCCCC-ChHhhcCCCCccEEEccCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYA-SMKGL-PEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~-~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
..+++|++|+|++| .+..+ |.. |++|++||+|||+++ ++..+
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~ 88 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFL 88 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEE
T ss_pred cccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCccc
Confidence 34444444444444 23333 233 444444444444444 44433
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.21 E-value=0.0022 Score=53.77 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDL 225 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l 225 (232)
.++++|+|++|+++.+|...|++|++|++|||+++ ++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i 66 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DV 66 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CC
Confidence 45666666666666666543566666666666666 44
No 124
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.18 E-value=0.0031 Score=56.57 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=31.5
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+..+++|++|++++|.+..+|.. ++++++|++|+++++ .+..+|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n-~l~~~~ 317 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSAN-KFENLC 317 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTC-CCSBGG
T ss_pred hccccCCCEEeccCCccCCCChh-hcccccCCEEECccC-CcCcCc
Confidence 34567777777777777777777 677777777777777 666553
No 125
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.11 E-value=0.005 Score=44.30 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=32.9
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
.+|++|+|++|.|+.||..+|..|.+|++|+|++.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 47999999999999999998999999999999987
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.10 E-value=0.013 Score=53.26 Aligned_cols=38 Identities=39% Similarity=0.415 Sum_probs=18.2
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+++|++|+|++|.++.+|. .+++|++|+|+++ +++.+|
T Consensus 80 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~ 117 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLP 117 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCC
T ss_pred CCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCC
Confidence 3455555555555555554 2344444444444 444443
No 127
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.08 E-value=0.0041 Score=57.78 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=41.4
Q ss_pred CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQK 232 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~si 232 (232)
+..+++|++|+|++|.+. .+|.+ |++|++|++|||+++ ++. .+|++|
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N-~l~g~ip~~l 676 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHN-DISGSIPDEV 676 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGG
T ss_pred hhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCC-ccCCCCChHH
Confidence 456789999999999887 79999 999999999999999 887 788654
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.07 E-value=0.0003 Score=54.16 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L 228 (232)
++|++|++++|.+..+| . ++++++|++|+++++ .+..+
T Consensus 93 ~~L~~L~L~~N~l~~l~-~-~~~l~~L~~L~l~~N-~i~~~ 130 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS-G-IEKLVNLRVLYMSNN-KITNW 130 (198)
T ss_dssp HHCSEEEEEEEECCCHH-H-HHHHHHSSEEEESEE-ECCCH
T ss_pred CcCCEEECcCCcCCcCC-c-cccCCCCCEEECCCC-cCCch
Confidence 44555555555555554 2 455555555555555 44443
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.91 E-value=0.016 Score=52.19 Aligned_cols=38 Identities=37% Similarity=0.441 Sum_probs=18.8
Q ss_pred CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
++|++|+|++|.+..+|. |+ .+|++|||+++ +|+.+|.
T Consensus 160 ~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSS-CCSSCCC
T ss_pred CCcCEEECCCCCCCCcch--hh--CCCCEEECcCC-CCCchhh
Confidence 345555555555555554 22 45555555555 5555443
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.90 E-value=0.0033 Score=55.31 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=25.8
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
..+++|++|+|++|.+..+++ ++.+++|++|||+++ .++.+|
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~ 96 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL 96 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEE
T ss_pred hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCC
Confidence 455666666666666655554 566666666666666 555554
No 131
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=95.84 E-value=0.0061 Score=53.18 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
+..+++|++|++++|.+..+| ++++++|++||++++ .++.+|
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~ 101 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD 101 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC
T ss_pred hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee
Confidence 346788999999999888885 788999999999999 888765
No 132
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.74 E-value=0.0053 Score=49.86 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=16.7
Q ss_pred CCCccEEEeccCCCCCCC---hHhhcCCCCccEEEccCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLP---EWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp---~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
+++|++|+|++|.+..++ +. ++++++|++|||++. +|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N-~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGN-ELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTS-CCC
T ss_pred CCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCC-ccC
Confidence 344444444444443332 22 344444444444444 443
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.51 E-value=0.026 Score=51.24 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
.+++|++|+|++|.+..+|.+ ++++++|++|+|+++ .+.
T Consensus 259 ~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N-~l~ 297 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN-PLS 297 (622)
T ss_dssp CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSC-CCC
T ss_pred ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCC-CCC
Confidence 345677777777777777777 677777777777777 554
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=94.81 E-value=0.027 Score=50.62 Aligned_cols=39 Identities=31% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+++|++|++++|.+..+|. .+++|++|+|+++ .++.+|.
T Consensus 139 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~L~~lp~ 177 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE----LPTSLEVLSVRNN-QLTFLPE 177 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCCC
T ss_pred CccccEEeCCCCccCcCCC----cCCCcCEEECCCC-CCCCcch
Confidence 3455666666665555555 2456666666666 6666654
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.53 E-value=0.069 Score=40.41 Aligned_cols=43 Identities=7% Similarity=-0.043 Sum_probs=28.4
Q ss_pred CCCCCCccEEEeccC-CCCCCChHhhcCC----CCccEEEccCCCCCC
Q 047834 184 PPSCPRLLTLLVRYA-SMKGLPEWFFQSM----PALRVLEWSRNGDLT 226 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~-~l~~lp~~~i~~L----~~Lr~LdL~~~~~l~ 226 (232)
+..+++|+.|+|++| .++.--=..+..+ ++|++|||++|.+|+
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 567888888888888 4543111114444 368888888886664
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.31 E-value=0.016 Score=48.90 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCC
Q 047834 186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~ 222 (232)
.+++|++|+|++|.+.. +|.. ++++++|++|+|++|
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNN 132 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSS
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCC
Confidence 44555555555554443 4444 455555555555555
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.17 E-value=0.014 Score=49.22 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCCCCccEEEeccCCCCC-----CChHhh--cCCCCccEEEccCCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKG-----LPEWFF--QSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~-----lp~~~i--~~L~~Lr~LdL~~~~~l~~ 227 (232)
..+++|++|+|++|.+.. +|.. + +++++|++|+|++| .+..
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n-~i~~ 288 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDA-FSKLENIGLQTLRLQYN-EIEL 288 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHH-HHTCSSCCCCEEECCSS-CCBH
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHH-HhhccCCCeEEEECcCC-cCCH
Confidence 445666666666666543 3554 4 33666777777666 6654
No 138
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=94.06 E-value=0.023 Score=46.72 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=17.2
Q ss_pred CCCCccEEEeccC-CCC--CCChHhhcCCCCccEEEccCC
Q 047834 186 SCPRLLTLLVRYA-SMK--GLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 186 ~l~~Lr~L~l~~~-~l~--~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
.+++|++|++++| .+. .+|.. ++++++|++|++++|
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred cCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 3445555555554 343 24443 444555555555554
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.73 E-value=0.023 Score=43.10 Aligned_cols=56 Identities=9% Similarity=0.037 Sum_probs=39.5
Q ss_pred ccccccceeEec------------CCCC----CCccEEEeccC-CCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834 172 VTWNKAVRVSLS------------PPSC----PRLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTK 227 (232)
Q Consensus 172 ~~~~~~~~lsl~------------~~~l----~~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~ 227 (232)
.....++.+.+. +..+ ++|++|+|++| +++.---..+.++++|++|+|++|..++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 345567777776 2332 47999999999 57642112277899999999999977763
No 140
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.55 E-value=0.68 Score=37.84 Aligned_cols=113 Identities=11% Similarity=0.011 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcC---CchhHHHHHHH
Q 047834 5 YSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHL---SSETHRKCFLF 81 (232)
Q Consensus 5 ~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~cfl~ 81 (232)
+...+|+..|+|.|+++..++..+.. ..+.+.+- .++.. .+...+.-.+..+ ++. .+..+..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~-~~~~~~~~---~~~~~----------~~~~~~~~~l~~l~~~~~~-~~~~l~~ 290 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLR-NGDFGRAM---KRTLE----------VAKGLIMGELEELRRRSPR-YVDILRA 290 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HCCHHHHH---HHHHH----------HHHHHHHHHHHHHHHHCHH-HHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhc-cccHhHHH---HHHHH----------HHHHHHHHHHHHHHhCChh-HHHHHHH
Confidence 46678999999999999999877543 12332221 11111 1222222222333 667 5888888
Q ss_pred hhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh-------hHHHHHHHH
Q 047834 82 CALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-------MHDMLRDLA 143 (232)
Q Consensus 82 ~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~-------mhdli~~~~ 143 (232)
+|. + ..+...+.....+.. ... .......+++.|++++++.. .|.+++.+.
T Consensus 291 la~---g-~~~~~~l~~~~~~~~-~~~------~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 291 IAL---G-YNRWSLIRDYLAVKG-TKI------PEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp HHT---T-CCSHHHHHHHHHHTT-CCC------CHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred HHh---C-CCCHHHHHHHHHHHh-CCC------CHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 887 2 144455544432211 011 12445688999999999963 455665543
No 141
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=93.35 E-value=0.026 Score=46.40 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
+..+++|++|++++|.+. ..|.. ++++++|++|++++|..+.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC
T ss_pred HhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC
Confidence 567889999999999877 56777 8889999999999985454
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=91.97 E-value=0.06 Score=46.24 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=33.2
Q ss_pred CCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834 187 CPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
.++|++|++++|.+. .+|.. +.++++|++||++++ .+.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N-~i~ 411 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNN-CLG 411 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSS-SCC
T ss_pred CCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCC-CCC
Confidence 679999999999887 78888 888999999999999 775
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=91.50 E-value=0.13 Score=42.95 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=31.4
Q ss_pred CCCC-CccEEEeccCCCCCCChHhhcCC-----CCccEEEccCCCCCCCCC
Q 047834 185 PSCP-RLLTLLVRYASMKGLPEWFFQSM-----PALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 185 ~~l~-~Lr~L~l~~~~l~~lp~~~i~~L-----~~Lr~LdL~~~~~l~~LP 229 (232)
..++ +|++|+|++|.+.......+..+ .+|++|||++| .+...+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~ 96 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKS 96 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHH
Confidence 3456 88888888888876533326654 88889999888 776543
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.47 E-value=0.13 Score=41.64 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCCCccEEEeccCCCCCCChHhhcCCC--CccEEEccCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKGLPEWFFQSMP--ALRVLEWSRNGDLT 226 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~--~Lr~LdL~~~~~l~ 226 (232)
.+++|++|+|++|.+..+.+ ++.+. +|++|+|++. .+.
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~N-pl~ 233 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGN-SLC 233 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTS-TTG
T ss_pred hCCCCCEEECCCCccCCchh--hhhcccCCcceEEccCC-cCc
Confidence 57899999999999888743 66666 8999999998 665
No 145
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.79 E-value=2.3 Score=34.69 Aligned_cols=111 Identities=12% Similarity=-0.003 Sum_probs=62.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHH-HHHhhcCCCCCCCCCcchhhHHH-HhHh--cCCchhHHHHHHHhh
Q 047834 8 SVLCFACNSISLTLITIGSAMASIRNNPAEWENA-VNELKNYPAEFPGMGDLIFPCLK-FSYD--HLSSETHRKCFLFCA 83 (232)
Q Consensus 8 ~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~-l~~L~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~cfl~~a 83 (232)
.+|+..|+|.|+++..++..+.. ..+.+.|-.. .+.... .+...+. +.++ .|++. .+..+..+|
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~-~~~~l~~la 300 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLD-NKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKR-YLNIMRTLS 300 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHH-HHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHcc-ccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHH-HHHHHHHHH
Confidence 67899999999999999988754 2344434221 110000 1112221 1111 67787 588888888
Q ss_pred hcCCCccccHHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHHHcccchh-------hHHHHHHH
Q 047834 84 LFLKNQLIRKDEHIDLWI-GEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-------MHDMLRDL 142 (232)
Q Consensus 84 ~fp~~~~~~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~-------mhdli~~~ 142 (232)
. +. +...+..... ..|. .. .......+++.|++++++.. .|+++++.
T Consensus 301 ~---g~--~~~~l~~~~~~~~g~-~~------~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 301 K---CG--KWSDVKRALELEEGI-EI------SDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp T---CB--CHHHHHHHHHHHHCS-CC------CHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred c---CC--CHHHHHHHHHHhcCC-CC------CHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 7 22 4444432211 1121 00 12345688999999999963 45665553
No 146
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=90.58 E-value=0.11 Score=43.43 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=32.7
Q ss_pred CCccEEEeccCCCCCCChHhhc----CC-CCccEEEccCCCCCCCCC
Q 047834 188 PRLLTLLVRYASMKGLPEWFFQ----SM-PALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 188 ~~Lr~L~l~~~~l~~lp~~~i~----~L-~~Lr~LdL~~~~~l~~LP 229 (232)
++|++|+|++|.+...+...+. .+ .+|++|||+++ .+...+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~ 125 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKS 125 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHH
Confidence 8999999999998865543233 34 89999999999 887765
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=90.39 E-value=0.16 Score=41.78 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCccEEEeccCCCCCCChHhhcCCCCccEEEccC
Q 047834 187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSR 221 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~ 221 (232)
+++|++|+|.+|+++.+|+..|.++.+|+.|+|.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 56667777766666666666566666666666654
No 148
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=90.37 E-value=0.1 Score=44.69 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
.+++|++|++++|.+.. +|.. +.++++|++||++++ .+.
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~ 297 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGN-ELG 297 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTC-CCH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCC-CCc
Confidence 46788888888887766 6777 777788888888877 653
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.30 E-value=0.4 Score=34.05 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=30.8
Q ss_pred cEEEeccCCCC--CCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834 191 LTLLVRYASMK--GLPEWFFQSMPALRVLEWSRNGDLTKLPMQK 232 (232)
Q Consensus 191 r~L~l~~~~l~--~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si 232 (232)
.+++-++.+++ .+|.. +- .+|++|||++. +|+.||.++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N-~l~~l~~~~ 50 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FP--VDTTELVLTGN-NLTALPPGL 50 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CC--TTCSEEECTTS-CCSSCCTTT
T ss_pred CEEEeCCCCCccccCCCC-CC--cCCCEEECCCC-cCCccChhh
Confidence 36777777888 99987 33 57999999999 999999853
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=89.30 E-value=0.13 Score=45.60 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCCCCccEEEeccCCCCC--CChHhhcCCCCccEEEccCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKG--LPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~--lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
..+++|++|++++|.+.. ++.. ++++++|++|+|++| +++
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~ls~n-~it 526 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAA-VTKLPSLRYLWVQGY-RAS 526 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHH-HHHCSSCCEEEEESC-BCC
T ss_pred hcCcccCeeeccCCCCcHHHHHHH-HHhcCccCeeECcCC-cCC
Confidence 345566666666665431 2332 455666666666666 443
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=87.07 E-value=0.26 Score=41.65 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834 186 SCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
..++|++|+|++|.+. .++.. +...++|++|||+++ .|.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N-~i~ 252 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFN-ELS 252 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHH-HHHCSSCCEEECTTS-SCC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHH-HHhCCCCCEEeccCC-CCC
Confidence 3456666666666554 23333 445566666666666 543
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=86.75 E-value=0.42 Score=39.18 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=37.9
Q ss_pred CCCCCCcc-EEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834 184 PPSCPRLL-TLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231 (232)
Q Consensus 184 ~~~l~~Lr-~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s 231 (232)
+..+.+|+ .+.+.+ +++.+++.-|.++.+|+.|++++. +++.+|+.
T Consensus 269 F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTT
T ss_pred hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchh
Confidence 56778898 999987 788887665889999999999888 88888763
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=86.28 E-value=0.27 Score=41.53 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=30.4
Q ss_pred CCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834 185 PSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
..+++|++|+|++|.+. .|+.. +.+..+|++|||++| .|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSS-CCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCC-CCC
Confidence 45678888888888764 34555 677788999999888 775
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=85.97 E-value=0.12 Score=43.54 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=16.5
Q ss_pred CCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCC
Q 047834 187 CPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~ 222 (232)
+++|++|+|+.|.+.. ++.. +.++++|+.|||++|
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECCSB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECCCC
Confidence 4455555555444332 2333 344455555555555
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=85.65 E-value=0.39 Score=36.09 Aligned_cols=39 Identities=28% Similarity=0.188 Sum_probs=29.0
Q ss_pred CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEc--cCCCCCC
Q 047834 186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEW--SRNGDLT 226 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL--~~~~~l~ 226 (232)
..++|++|+|++|.+.. |... +.....|++||| +++ .|.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N-~i~ 136 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQ-PLG 136 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSS-CCC
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHH-HHhCCCceEEEecCCCC-CCC
Confidence 44678888888887753 5666 777788999998 667 554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=84.30 E-value=0.68 Score=34.74 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=31.1
Q ss_pred CCCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT 226 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~ 226 (232)
+...++|++|+|++|.+. .+... +....+|++|||+++ .|.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESN-FIS 106 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSS-CCC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcCC-cCC
Confidence 345678999999999765 35555 666788999999998 765
No 157
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=83.33 E-value=0.42 Score=42.24 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=21.1
Q ss_pred CCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCC
Q 047834 187 CPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDL 225 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l 225 (232)
+++|++|++++|.+... +..++..+++|++|++++| .+
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC-SV 518 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CC
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CC
Confidence 56666666666655321 1122445666777777766 44
No 158
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=82.40 E-value=1 Score=39.73 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=26.1
Q ss_pred CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCC
Q 047834 185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDL 225 (232)
Q Consensus 185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l 225 (232)
..+++|+.|.+.++....+|.. +..+++|++|+|++| .+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~-~l 305 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYA-LL 305 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTC-CC
T ss_pred hccccccccCccccchhHHHHH-HhhcCCCcEEecCCC-cC
Confidence 3455666666666655666766 677777777777777 44
No 159
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=81.17 E-value=0.31 Score=43.09 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCC
Q 047834 186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~ 222 (232)
.+++|++|++++|.+.. ++.- ...+++|++|++++|
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~-~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHF-PDTYTSLVSLNISCL 194 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGS-CTTCCCCCEEECTTC
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHH-hhcCCcCcEEEeccc
Confidence 57888888888886433 3332 446778888888888
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=77.15 E-value=12 Score=31.03 Aligned_cols=111 Identities=11% Similarity=-0.044 Sum_probs=60.6
Q ss_pred HHHHHHHHhcC------CchHHHHHHHHHh---c---C-CCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCC
Q 047834 5 YSASVLCFACN------SISLTLITIGSAM---A---S-IRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLS 71 (232)
Q Consensus 5 ~i~~~iv~~c~------GlPLAl~~~g~~L---~---~-~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~ 71 (232)
+....|++.|+ |.|..+..+.... . . ..-+.+.+..+...... ...+.-++..||
T Consensus 240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~ 307 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALS 307 (412)
T ss_dssp HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCC
Confidence 45678889999 9997655544321 1 1 01233444444432110 122334567899
Q ss_pred chhHHHHHHHhhhcC--CCccccHHHHHHHHH--H---cCCCCCCcchHHHHHHHHHHHHHHHHcccchh
Q 047834 72 SETHRKCFLFCALFL--KNQLIRKDEHIDLWI--G---EGLLRDSHNIAVARLQGESIIDSLIRVCLLEE 134 (232)
Q Consensus 72 ~~~~k~cfl~~a~fp--~~~~~~~~~li~~w~--a---~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~ 134 (232)
++ .+.++..++.++ .+..++..++...+. + .|.-.. .......++++|++.+++..
T Consensus 308 ~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 308 IH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPR------GYTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp HH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCC------CHHHHHHHHHHHHHTTSEEE
T ss_pred HH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhCCCEEe
Confidence 98 488888888654 233455555544432 1 121111 12345578999999999873
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=74.64 E-value=1 Score=37.83 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=6.6
Q ss_pred CCCccEEEccCC
Q 047834 211 MPALRVLEWSRN 222 (232)
Q Consensus 211 L~~Lr~LdL~~~ 222 (232)
+++|++|||+.+
T Consensus 278 ~~~L~~LdLs~n 289 (362)
T 2ra8_A 278 LPQLETMDISAG 289 (362)
T ss_dssp GGGCSEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 455555555554
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.52 E-value=2.8 Score=33.89 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=20.2
Q ss_pred HHHcCCCCCCcchHHHHHHHHHHHH-HHHHcccchh
Q 047834 100 WIGEGLLRDSHNIAVARLQGESIID-SLIRVCLLEE 134 (232)
Q Consensus 100 w~a~g~~~~~~~~~~~~~~~~~~l~-~Lv~~~ll~~ 134 (232)
-+..|++..........+.|..++. ++.+|+|+|+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 4567887654334556788888887 8888888874
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=55.42 E-value=6.3 Score=33.35 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=16.6
Q ss_pred ccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834 190 LLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229 (232)
Q Consensus 190 Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP 229 (232)
|+.+.+.+ +++.++..-|.++.+|+.++++++ +++.+|
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~ 196 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLP 196 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEEC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEec
Confidence 44444432 344444333444455555555444 444443
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=52.55 E-value=13 Score=31.35 Aligned_cols=44 Identities=5% Similarity=0.012 Sum_probs=29.8
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+.+|+.+.|.. +++.++..-|.++ +|+.+++++. .+..+++
T Consensus 319 F~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~ 362 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFE 362 (401)
T ss_dssp TTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCS-SCCBCCC
T ss_pred hcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC-CCccccc
Confidence 45567777777743 4666666557777 8888888877 6666554
No 165
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=52.01 E-value=7.5 Score=18.87 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=14.3
Q ss_pred cCCchHHHHHHHHHhcC
Q 047834 14 CNSISLTLITIGSAMAS 30 (232)
Q Consensus 14 c~GlPLAl~~~g~~L~~ 30 (232)
-.-+|||+.++++.+..
T Consensus 8 rrklplavav~agv~~a 24 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCTHHHHHHHHTTCC
T ss_pred cccCchHHHHHHHHhHh
Confidence 34699999999998876
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=40.74 E-value=73 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEcc
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWS 220 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~ 220 (232)
+..+.+|+.+.+.++.++.+++.-|.++.+|+.++|.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4566788888887777777776657777777777773
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=35.25 E-value=19 Score=27.36 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=22.8
Q ss_pred CCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCC
Q 047834 187 CPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 187 l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
-..|++|+|++|.|. .|-+. +..=..|+.|+|+++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~a-L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHH-TTTTCCCSEEECCCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHH-HhhCCceeEEECCCC
Confidence 356788888887653 34444 444456888888765
No 168
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=34.54 E-value=45 Score=27.19 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=57.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHHhhhcCCCccccHHHHHHHHHHcCCCCCCcch
Q 047834 33 NNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNI 112 (232)
Q Consensus 33 ~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~ 112 (232)
.+.++--++...|-+..+ ..+..+|..|+.. .|..|.| ....||++|.|.+....
T Consensus 74 ms~eeQlqvMrDL~~~~d----------t~isR~Yg~ls~n-~KL~fWY--------------~Lae~M~~G~VipvP~~ 128 (323)
T 3mg1_A 74 MGPLQQTQAMCDLANRAD----------TPLCRTYASWSPN-IKLGFWY--------------RLGELMEQGFVAPIPAG 128 (323)
T ss_dssp SCHHHHHHHHHHHHHTCC----------CHHHHHHHTBCHH-HHHHHHH--------------HHHHHHHHTSSCCSCTT
T ss_pred CCHHHHHHHHHHHHhCCC----------CHHHHHHhccCCc-chhHHHH--------------HHHHHhcCCcEecCCCC
Confidence 566666666666655333 3557899999999 6999998 46789999999887766
Q ss_pred HHHHHHHHHHHHHHHHcccch
Q 047834 113 AVARLQGESIIDSLIRVCLLE 133 (232)
Q Consensus 113 ~~~~~~~~~~l~~Lv~~~ll~ 133 (232)
...-..+...++.+....+=|
T Consensus 129 Y~lS~~a~~vl~~I~~Ldf~Q 149 (323)
T 3mg1_A 129 YQLSANANAVLATIQGLESGQ 149 (323)
T ss_dssp CCCCHHHHHHHHHHHTSCHHH
T ss_pred CCcCHHHHHHHHHHHcCChhh
Confidence 777788888888887777666
No 169
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=32.43 E-value=55 Score=21.21 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh-hHHHHHHHHHHH
Q 047834 92 RKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-MHDMLRDLALWI 146 (232)
Q Consensus 92 ~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~-mhdli~~~~~~i 146 (232)
.++.++.+|.|+-+--. .+.++.|..++|...+-++ -+|+++.+...+
T Consensus 9 RRNklLglWAAe~lGlt-------g~~aeaYa~~vv~adfee~gdedV~rKv~~DL 57 (85)
T 2kzc_A 9 RRNKLMGLWVAEVLGKS-------GDEANAYAAEVVKADFEEAGHEDVMRKVLGDL 57 (85)
T ss_dssp HHHHHHHHHHHHHHTCC-------HHHHHHHHHHGGGSSSSSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 46789999998654222 4667889999999988865 445555544443
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=31.18 E-value=1.2e+02 Score=24.50 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM 230 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~ 230 (232)
+..+.+|+.+.+.. +++.++...|.++.+|+.+++.++ .++.+++
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~ 303 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEP 303 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCT-TCCEECT
T ss_pred cceeehhccccccc-cceecccccccccccccccccccc-ccceehh
Confidence 44567788887754 577777776888899999999877 6766654
No 171
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=28.51 E-value=2e+02 Score=23.42 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=27.0
Q ss_pred CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834 184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN 222 (232)
Q Consensus 184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~ 222 (232)
+..|.+|+.+.+.. +++.+++.-|.++.+|+.+++.+.
T Consensus 330 F~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 45667788887753 477777665778888888887653
No 172
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=20.63 E-value=43 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.8
Q ss_pred chhHHHHHHHHhcCCchHHHHHHHHHhcC
Q 047834 2 SQSYSASVLCFACNSISLTLITIGSAMAS 30 (232)
Q Consensus 2 ~~~~i~~~iv~~c~GlPLAl~~~g~~L~~ 30 (232)
+|.+||+.+ |.|-|.+++|..++.
T Consensus 24 TYg~IA~~~-----G~p~aaRaVG~Al~~ 47 (116)
T 3gva_A 24 TYGEIARYV-----GMPSYARQVGQAMKH 47 (116)
T ss_dssp CHHHHHHHT-----TCTTCHHHHHHHHHT
T ss_pred eHHHHHHHh-----CCCCcHHHHHHHHHh
Confidence 455555543 889999999999988
Done!