BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047835
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|B Chain B, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|C Chain C, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|D Chain D, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|3JV7|A Chain A, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|B Chain B, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|C Chain C, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|D Chain D, Structure Of Adh-A From Rhodococcus Ruber
Length = 345
Score = 28.9 bits (63), Expect = 0.82, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 27 GFPGLLSVAMKGDDLRHMEVIGDIDEVALA 56
G PG ++ M D RH+ IGD+D VA A
Sbjct: 120 GSPGSMAEYMIVDSARHLVPIGDLDPVAAA 149
>pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXL|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
Length = 383
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 25 IAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMKLDILDG 76
+AG+ GL+ +A G D+ + +G + E L +L V+ LDG
Sbjct: 117 LAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDG 168
>pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With
(S)-Atrolactate
Length = 359
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 25 IAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMKLDILDG 76
+AG+ GL+ +A G D+ + +G + E L +L V+ LDG
Sbjct: 93 LAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDG 144
>pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (R)-Alpha-Phenylglycidate
pdb|2MNR|A Chain A, Mechanism Of The Reaction Catalyzed By Mandelate Racemase.
2. Crystal Structure Of Mandelate Racemase At 2.5
Angstroms Resolution: Identification Of The Active Site
And Possible Catalytic Residues
Length = 357
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 25 IAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMKLDILDG 76
+AG+ GL+ +A G D+ + +G + E L +L V+ LDG
Sbjct: 91 LAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDG 142
>pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With
(s)-atrolactate
Length = 359
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 25 IAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMKLDILDG 76
+AG+ GL+ +A G D+ + +G + E L +L V+ LDG
Sbjct: 93 LAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDG 144
>pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)-
Mandelate
Length = 359
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 25 IAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMKLDILDG 76
+AG+ GL+ +A G D+ + +G + E L +L V+ LDG
Sbjct: 93 LAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDG 144
>pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (r)-alpha-phenylglycidate
Length = 359
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 25 IAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMKLDILDG 76
+AG+ GL+ +A G D+ + +G + E L +L V+ LDG
Sbjct: 93 LAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDG 144
>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
pdb|4EHJ|B Chain B, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
Length = 392
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 19 TKAFKIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMK---LDILD 75
TKA + SVA GD + +E G D+V+ Y+ T L+ L+
Sbjct: 327 TKALSLAIAQSHAFSVAGGGDTIAAIEKFGIKDQVS----------YISTAGGAFLEFLE 376
Query: 76 GRNQPAIE 83
G+ PAIE
Sbjct: 377 GKKLPAIE 384
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
With Bound Adp From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 395
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 19 TKAFKIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMK---LDILD 75
TKA + SVA GD + +E G D+V+ Y+ T L+ L+
Sbjct: 330 TKALSLAIAQSHAFSVAGGGDTIAAIEKFGIKDQVS----------YISTAGGAFLEFLE 379
Query: 76 GRNQPAIE 83
G+ PAIE
Sbjct: 380 GKKLPAIE 387
>pdb|3FMC|A Chain A, Crystal Structure Of A Putative Succinylglutamate
Desuccinylase Aspartoacylase Family Protein (Sama_0604)
From Shewanella Amazonensis Sb2b At 1.80 A Resolution
pdb|3FMC|B Chain B, Crystal Structure Of A Putative Succinylglutamate
Desuccinylase Aspartoacylase Family Protein (Sama_0604)
From Shewanella Amazonensis Sb2b At 1.80 A Resolution
pdb|3FMC|C Chain C, Crystal Structure Of A Putative Succinylglutamate
Desuccinylase Aspartoacylase Family Protein (Sama_0604)
From Shewanella Amazonensis Sb2b At 1.80 A Resolution
pdb|3FMC|D Chain D, Crystal Structure Of A Putative Succinylglutamate
Desuccinylase Aspartoacylase Family Protein (Sama_0604)
From Shewanella Amazonensis Sb2b At 1.80 A Resolution
Length = 368
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 41 LRHMEVIGDIDEVALANML--RRKIGYVETMKLDILDGRN 78
L H E++GDI V LAN L +K G + D + G N
Sbjct: 60 LEHYELLGDISLVPLANPLGINQKSGEFTLGRFDPITGVN 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,997,159
Number of Sequences: 62578
Number of extensions: 106946
Number of successful extensions: 272
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 10
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)