BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047835
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9HUW5|DSBD1_PSEAE Thiol:disulfide interchange protein DsbD 1 OS=Pseudomonas
           aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
           LMG 12228) GN=dsbD1 PE=3 SV=1
          Length = 591

 Score = 32.3 bits (72), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 27  GFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRR 61
           G P +L  A  GD+   + VIG+ID   LA  LRR
Sbjct: 552 GPPAILFFAPGGDEWSDLRVIGEIDAAGLAERLRR 586


>sp|Q6L403|R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 OS=Solanum
            demissum GN=R1B-17 PE=3 SV=1
          Length = 1312

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 3    KKILYRLDNMHSPKCRTKAFKIIAGFPGLLSVAMKGDDLRHMEVIGDID--EVALANMLR 60
            KK+++++D +   K R + FK +A  PG+ SVA   +  + + V GD+D  EV L     
Sbjct: 1249 KKMMWKVD-VGVNKGRLETFKRLAPLPGIKSVAFDFNK-KKLTVTGDMDANEVQLVVSKL 1306

Query: 61   RKIG 64
            RK G
Sbjct: 1307 RKRG 1310


>sp|Q27874|PAT3_CAEEL Integrin beta pat-3 OS=Caenorhabditis elegans GN=pat-3 PE=1 SV=1
          Length = 809

 Score = 29.3 bits (64), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 32  LSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVETMKLDILDGRNQPAIEPEVPQQPF 91
           LS +MK DD + +  +GD+    LA  +R             +D +  P I+P + +Q  
Sbjct: 160 LSYSMK-DDKQKLSELGDL----LAERMRTVTKNFRLGFGSFIDKKLMPFIDPRIEKQLS 214

Query: 92  PAETPC 97
           P  TPC
Sbjct: 215 PCPTPC 220


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.141    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,872,582
Number of Sequences: 539616
Number of extensions: 1434835
Number of successful extensions: 3603
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3600
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)