BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047837
(882 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 145/689 (21%), Positives = 261/689 (37%), Gaps = 168/689 (24%)
Query: 35 SHLMVSHR-----MPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLY 89
SH+ V R + VA S DG+ +A+ V +W+ N + L GH
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASD--DKTVKLWN-RNGQLLQTLTGHSS 58
Query: 90 GVECIAFSPDGEHLVTVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVT 147
V +AFSPDG+ + + + LWN R+ L+ L +S S++ FS D + I +
Sbjct: 59 SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--SSVRGVAFSPDGQTIAS 115
Query: 148 AG-KKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISAT------- 199
A K +K W R + ++LT H+ V G+ ++ SA+
Sbjct: 116 ASDDKTVKLW---------NRNGQLLQTLTGHSSSV-WGVAFSPDGQTIASASDDKTVKL 165
Query: 200 WTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKN-------------- 245
W NG + Q G S +++ + + + S S K+V L +N
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSSV 224
Query: 246 -GFALSASSKLIACACSNGAVHLFD-----IQSLKHAGTLHYSEAKKCNGENDTVSTA-- 297
G A S + IA A + V L++ +Q+L + A + +G+ T+++A
Sbjct: 225 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQ--TIASASD 282
Query: 298 -KATELYFK-------LTPTIPNAIACQFS-TSEKLVVVYGDHSLYVWDIHDVNEATRCC 348
K +L+ + LT + FS + + D ++ +W+
Sbjct: 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQHLQ 338
Query: 349 VLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSK 408
L HS+ +W + P G + ++ S D T++LW+ +L +
Sbjct: 339 TLTGHSSSVWGV-------AFSPD----------GQTIASASDDKTVKLWN--RNGQLLQ 379
Query: 409 DVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLL--LDAHDAE 466
+ GH S G+ +T S +++ + +R LL L H +
Sbjct: 380 TLTGHSS-----------SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 428
Query: 467 IXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526
+ DD +AS D+T+ L++ RN L++++ HS++V V
Sbjct: 429 VWGVAFS----PDD---------QTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGV 473
Query: 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV 586
F+ +G+ I S S D+++ K+ R+ QL T + +
Sbjct: 474 AFSPDGQTIASASDDKTV------------KLWNRNGQLLQTLTGHSSSV---------- 511
Query: 587 GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646
V P G + + +K++ L++ +G++
Sbjct: 512 -----------------------------RGVAFSPDGQTIASASDDKTVKLWNR-NGQL 541
Query: 647 VAKAMGHGEVITGVTFLPDCKHIVSVGGD 675
+ GH + GV F PD + I S D
Sbjct: 542 LQTLTGHSSSVWGVAFSPDGQTIASASSD 570
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 113/526 (21%), Positives = 207/526 (39%), Gaps = 122/526 (23%)
Query: 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV 106
+ VA S DG+ +A+ V +W+ N + L GH V +AFSPDG+ + +
Sbjct: 142 VWGVAFSPDGQTIASASD--DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 198
Query: 107 GG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSAT 163
+ LWN R+ L+ L +SS ++ FS D + I +A K +K W
Sbjct: 199 SDDKTVKLWN-RNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWN------ 249
Query: 164 ARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISAT-------WTDNGVVNQEQAGESFT 216
R + ++LT H+ VN G+ ++ SA+ W NG + Q G S +
Sbjct: 250 ---RNGQLLQTLTGHSSSVN-GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 305
Query: 217 IYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFD-----IQ 271
++ G A S + IA A + V L++ +Q
Sbjct: 306 VW---------------------------GVAFSPDGQTIASASDDKTVKLWNRNGQHLQ 338
Query: 272 SLKHAGTLHYSEAKKCNGENDTVSTA---KATELYFK-------LTPTIPNAIACQFS-T 320
+L + + A +G+ T+++A K +L+ + LT + FS
Sbjct: 339 TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 396
Query: 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC 380
+ + D ++ +W+ L HS+ +W + P +A
Sbjct: 397 GQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGV-------AFSPDDQTIA--- 442
Query: 381 TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETS 440
+ S D T++LW+ +L + + GH S G+ +T
Sbjct: 443 -------SASDDKTVKLWNR--NGQLLQTLTGHSS-----------SVRGVAFSPDGQTI 482
Query: 441 VSTQGYRSMAVSSRGSTLL--LDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRD 498
S +++ + +R LL L H + + + +AS D
Sbjct: 483 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT-------------IASASDD 529
Query: 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544
+T+ L++ RN L++++ HS++V V F+ +G+ I S S+D+++
Sbjct: 530 KTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 119/275 (43%), Gaps = 42/275 (15%)
Query: 430 GIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTD-- 487
G+ ERN +E S+ R +A S G T+ + D + + +L+ +T
Sbjct: 5 GVKERNRLEAHSSS--VRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHS 57
Query: 488 ----------SHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILS 537
+AS D+T+ L++ RN L++++ HS++V V F+ +G+ I S
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115
Query: 538 CSADRSLVVRDVVETNSAYKISRRHQQL-----ASQGTVYDMDIDPTMEVVITVGQDKKI 592
S D+++ K+ R+ QL +V+ + P + + + DK +
Sbjct: 116 ASDDKTV------------KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163
Query: 593 NSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG 652
++ G+L+++ V P G + + +K++ L++ +G+++ G
Sbjct: 164 KLWN-RNGQLLQTLTGHSS--SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 219
Query: 653 HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687
H + GV F PD + I S D ++ + G L
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 254
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE 551
+AS D+T+ L++ RN L++++ HS++V V F+ +G+ I S S D+++
Sbjct: 359 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV------- 409
Query: 552 TNSAYKISRRHQQL-----ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
K+ R+ QL +V+ + P + + + DK + ++ G+L+++
Sbjct: 410 -----KLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTL 463
Query: 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDC 666
V P G + + +K++ L++ +G+++ GH + GV F PD
Sbjct: 464 TGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 520
Query: 667 KHIVSVGGDGLQRVKEKYGIL 687
+ I S D ++ + G L
Sbjct: 521 QTIASASDDKTVKLWNRNGQL 541
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE 551
+AS D+T+ L++ RN L++++ HS++V V F +G+ I S S D+++
Sbjct: 236 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV------- 286
Query: 552 TNSAYKISRRHQQL-----ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
K+ R+ QL +V+ + P + + + DK + ++ L
Sbjct: 287 -----KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT 341
Query: 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDC 666
+ V P G + + +K++ L++ +G+++ GH + GV F PD
Sbjct: 342 GHSSSV---WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 667 KHIVSVGGDGLQRVKEKYGIL 687
+ I S D ++ + G L
Sbjct: 398 QTIASASDDKTVKLWNRNGQL 418
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 42/259 (16%)
Query: 36 HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIA 95
HL + VA S DG+ +A+ V +W+ N + L GH V +A
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASD--DKTVKLWN-RNGQLLQTLTGHSSSVRGVA 392
Query: 96 FSPDGEHLVTVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKH 152
FSPDG+ + + + LWN R+ L+ L +S S++ FS D + I +A K
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--SSVWGVAFSPDDQTIASASDDKT 449
Query: 153 LKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISAT-------WTDNGV 205
+K W R + ++LT H+ V G+ ++ SA+ W NG
Sbjct: 450 VKLW---------NRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQ 499
Query: 206 VNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKN---------------GFALS 250
+ Q G S ++ + + + S S K+V L +N G A S
Sbjct: 500 LLQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 558
Query: 251 ASSKLIACACSNGAVHLFD 269
+ IA A S+ V L++
Sbjct: 559 PDGQTIASASSDKTVKLWN 577
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L+ ++ H+ AV++VKF+ NG + S SAD+ +++ AY
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADK------LIKIWGAYDGKFEKTIS 65
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ + D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 123
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G + H + ++ V F D IVS DGL R+
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 139
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 140 KTGMCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 60 AAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRS 117
+A +S P P N A + L GH V + FSP+GE L + I +W
Sbjct: 3 SATQSKPTPVK-----PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 57
Query: 118 AMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 58 GKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 74 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 130
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ M + L A+S +++ F+ D IV++ L + W S +
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 166 TRLN 169
T ++
Sbjct: 189 TLID 192
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 178 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 234
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 293
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 294 E-NIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L+ ++ H+ AV++VKF+ NG + S SAD+ +++ AY
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADK------LIKIWGAYDGKFEKTIS 65
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ + D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 123
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G + H + ++ V F D IVS DGL R+
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 139
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 140 KTGMCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + + L+D+ G+ + GH
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 60 AAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRS 117
+A +S P P N A + L GH V + FSP+GE L + I +W
Sbjct: 3 SATQSKPTPVK-----PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 57
Query: 118 AMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 58 GKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 74 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 130
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ M + L A+S +++ F+ D IV++ L + W S +
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 166 TRLN 169
T ++
Sbjct: 189 TLID 192
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 178 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDND--LKLWDYSKGKCLKTYT 234
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 293
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 294 E-NIIASAALENDKTIKLW 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 75 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 126
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 85 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 142
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 143 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 195
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 63 ESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAML 120
+S P P N A L GH V + FSP+GE L + I +W
Sbjct: 9 QSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 121 VMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 64 EKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 181 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYT 237
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 296
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 297 E-NIIASAALENDKTIKLW 314
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 77 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 133
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 166 TRLN 169
T ++
Sbjct: 192 TLID 195
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 30 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 142
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 143 -----KTGKCLKTLPAHSDPV 158
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 75 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 126
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 85 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 142
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 143 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 195
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 60 AAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRS 117
+A +S P P N A L GH V + FSP+GE L + I +W
Sbjct: 6 SATQSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 118 AMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 61 GKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 181 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 237
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 296
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 297 E-NIIASAALENDKTIKLW 314
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 77 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 133
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 166 TRLN 169
T ++
Sbjct: 192 TLID 195
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 91 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 142
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 101 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 158
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 159 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 211
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
KP A ++ +A +S P P N A L GH V + FSP+GE L
Sbjct: 7 KPETEAARAQPTPSSSATQSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLA 61
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ I +W + + I+ +SSD+ +V+A K LK W + S
Sbjct: 62 SSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 162 ATART 166
+T
Sbjct: 120 KCLKT 124
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 197 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYT 253
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 312
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 313 E-NIIASAALENDKTIKLW 330
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 93 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 149
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 150 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 166 TRLN 169
T ++
Sbjct: 208 TLID 211
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 93 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 144
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 103 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 160
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 161 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 213
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
KP A ++ +A +S P P N A L GH V + FSP+GE L
Sbjct: 9 KPETEAARAQPTPSSSATQSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLA 63
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ I +W + + I+ +SSD+ +V+A K LK W + S
Sbjct: 64 SSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 162 ATART 166
+T
Sbjct: 122 KCLKT 126
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 199 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYT 255
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 314
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 315 E-NIIASAALENDKTIKLW 332
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 95 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 151
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 166 TRLN 169
T ++
Sbjct: 210 TLID 213
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCC-------VAMSRDGRYVAAGESGPQPAVLVWDCA 76
L+ + D + + +++ R+ + C A+S D ++ + +W
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSS--TSADKTAKIWSFD 1122
Query: 77 NLAFISELKGHLYGVECIAFSPDGEHLVT--VGGYIYLWNWRSAMLV-----MKLKANSS 129
L+ + ELKGH V C AFS DG L T G I +WN L+ + ++ ++
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1182
Query: 130 CSA--ITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKP 181
+T CFS D+K +V+AG +LK+W + + +++T GT +H P
Sbjct: 1183 THGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1235
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 32/213 (15%)
Query: 488 SHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVR 547
+H LA+G D + L+D+ + + ++ H+ +V +F+ + + SCSAD +L +
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVV-----------ITVGQDKKINSFS 596
DV N I+ + L+S+ D+++ +V I V K+ F
Sbjct: 778 DVRSANERKSINVKRFFLSSEDPPEDVEV-----IVKCCSWSADGDKIIVAAKNKVLLFD 832
Query: 597 IAAGKLI-------RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAK 649
I L+ S Q DF P V + S + L++ S VA
Sbjct: 833 IHTSGLLAEIHTGHHSTIQYCDFS--------PYDHLAVIALSQYCVELWNIDSRLKVAD 884
Query: 650 AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682
GH + GV F PD ++ D RV E
Sbjct: 885 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP 578
H+ AV F+ +G++I SC AD++L V I A + V
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK------AHEDEVLCCAFSS 674
Query: 579 TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC- 637
+ T DKK+ + A GKL+ ++ + + + T + S L+ + SN
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLK 733
Query: 638 LYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
L+D E GH + F PD + + S DG R+
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 143/378 (37%), Gaps = 50/378 (13%)
Query: 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSAC---IWDIKNLGCENM---HDPS 372
S + KLV Y +HS V H N++ + + +WD+ C N H S
Sbjct: 693 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 752
Query: 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIF 432
V+ R ++CSADGT+RLWD+ +E +S+N++ +
Sbjct: 753 VN-HCRFSPDDELLASCSADGTLRLWDVRSANE-------RKSINVKRFFLSSEDPPEDV 804
Query: 433 ERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD----AEIXXXXXXXXXKKD----DVLEE 484
E S S G + + V+++ LL D H AEI D D L
Sbjct: 805 EVIVKCCSWSADGDK-IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 863
Query: 485 VTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544
+ S Y + D + + D + H + V V F+ +G L+ S D+++
Sbjct: 864 IALSQYCVELWNIDSRLKVADCR----------GHLSWVHGVMFSPDGSSFLTASDDQTI 913
Query: 545 VVRDV--VETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL 602
V + V NSA + + + + + +D + + G+ +I+ A
Sbjct: 914 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 973
Query: 603 IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
+ P Y+ + +I + + + + + +GH + + + F
Sbjct: 974 ---------------CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1018
Query: 663 LPDCKHIVSVGGDGLQRV 680
D K ++S D + +V
Sbjct: 1019 TADGKTLISSSEDSVIQV 1036
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 22/193 (11%)
Query: 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV 106
LCC A S D Y+A + + V +WD A + H V C F+ HL+
Sbjct: 668 LCC-AFSSDDSYIATCSADKK--VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 107 GG----YIYLW--NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVT-AGKKHLKFWTIG 159
G ++ LW N + M NS + FS D + + + + L+ W +
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNS----VNHCRFSPDDELLASCSADGTLRLWDV- 779
Query: 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYA 219
SA R +N L+ P E V V +W+ +G A ++
Sbjct: 780 RSANERKSINVKRFFLSSEDPP-------EDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 832
Query: 220 LTDAGILYIVHSG 232
+ +G+L +H+G
Sbjct: 833 IHTSGLLAEIHTG 845
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 49 CVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG- 107
C +S YVA G+ A+ + + N S GH V I F+ DG+ L++
Sbjct: 973 CCCLSPHLEYVAFGDE--DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 108 -GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATAR 165
I +WNW++ V L+A+ + D++ + + +K W + + R
Sbjct: 1031 DSVIQVWNWQTGDYVF-LQAHQ--ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER 1086
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 67 QPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVT 105
Q V +W+ + +++ +GHL V + FSPDG +T
Sbjct: 868 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT 906
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 74 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 125
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 84 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 141
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 142 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 194
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 56 GRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLW 113
G +A +S P P N A L GH V + FSP+GE L + I +W
Sbjct: 1 GAMGSATQSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
Query: 114 NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 56 GAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 107
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 180 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 236
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 295
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 296 E-NIIASAALENDKTIKLW 313
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 76 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 132
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 166 TRLN 169
T ++
Sbjct: 191 TLID 194
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 69 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 120
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 79 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 136
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 137 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 189
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 63 ESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAML 120
+S P P N A L GH V + FSP+GE L + I +W
Sbjct: 3 QSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 57
Query: 121 VMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 58 EKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 175 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 231
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 290
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 291 E-NIIASAALENDKTIKLW 308
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 71 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 127
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 166 TRLN 169
T ++
Sbjct: 186 TLID 189
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 24 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 136
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 137 -----KTGKCLKTLPAHSDPV 152
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 75 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 126
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 85 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 142
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 143 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 195
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 60 AAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRS 117
+A +S P P N A L GH V + FSP+GE L + I +W
Sbjct: 6 SATQSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 118 AMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 61 GKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 181 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 237
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 296
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 297 E-NIIASAALENDKTIKLW 314
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 77 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 133
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 166 TRLN 169
T ++
Sbjct: 192 TLID 195
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 67
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 68 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 119
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 78 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 135
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 136 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 188
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 77 NLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAMLVMKLKANSSCSAIT 134
N A L GH V + FSP+GE L + I +W + + I+
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGIS 68
Query: 135 SACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+SSD+ +V+A K LK W + S +T
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 101
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 174 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 230
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 231 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 289
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 290 E-NIIASAALENDKTIKLW 307
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 70 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 126
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 127 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 166 TRLN 169
T ++
Sbjct: 185 TLID 188
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 23 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 135
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 136 -----KTGKCLKTLPAHSDPV 151
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ +++ AY
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADK------LIKIWGAYDGKFEKTIS 58
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ + D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 116
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 75 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 132
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 133 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 185
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 77 NLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAMLVMKLKANSSCSAIT 134
N A L GH V + FSP+GE L + I +W + + I+
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGIS 65
Query: 135 SACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+SSD+ +V+A K LK W + S +T
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 98
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 171 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 227
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 228 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 286
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 287 E-NIIASAALENDKTIKLW 304
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 67 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 123
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 124 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 166 TRLN 169
T ++
Sbjct: 182 TLID 185
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 20 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 132
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 133 -----KTGKCLKTLPAHSDPV 148
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 69 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 120
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 79 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 136
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 137 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 189
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 61 AGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSA 118
A +S P P N A L GH V + FSP+GE L + I +W
Sbjct: 1 ATQSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 55
Query: 119 MLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 56 KFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 175 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 231
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 290
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 291 E-NIIASAALENDKTIKLW 308
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 71 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 127
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 166 TRLN 169
T ++
Sbjct: 186 TLID 189
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 24 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 136
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 137 -----KTGKCLKTLPAHSDPV 152
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 70 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 121
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 80 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 137
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 138 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 190
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 63 ESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAML 120
+S P P N A L GH V + FSP+GE L + I +W
Sbjct: 4 QSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 58
Query: 121 VMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 59 EKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 103
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 176 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 232
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 233 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 291
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 292 E-NIIASAALENDKTIKLW 309
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 72 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 128
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 129 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 166 TRLN 169
T ++
Sbjct: 187 TLID 190
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 25 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 137
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 138 -----KTGKCLKTLPAHSDPV 153
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCC-------VAMSRDGRYVAAGESGPQPAVLVWDCA 76
L+ + D + + +++ R+ + C A+S D ++ + +W
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSS--TSADKTAKIWSFD 1115
Query: 77 NLAFISELKGHLYGVECIAFSPDGEHLVT--VGGYIYLWNWRSAMLV-----MKLKANSS 129
L+ + ELKGH V C AFS DG L T G I +WN L+ + ++ ++
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175
Query: 130 CSA--ITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKP 181
+T CFS D+K +V+AG +LK+W + + +++T GT +H P
Sbjct: 1176 THGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1228
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 32/213 (15%)
Query: 488 SHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVR 547
+H LA+G D + L+D+ + + ++ H+ +V +F+ + + SCSAD +L +
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVV-----------ITVGQDKKINSFS 596
DV N I+ + L+S+ D+++ +V I V K+ F
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEV-----IVKCCSWSADGDKIIVAAKNKVLLFD 825
Query: 597 IAAGKLI-------RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAK 649
I L+ S Q DF P V + S + L++ S VA
Sbjct: 826 IHTSGLLAEIHTGHHSTIQYCDFS--------PYDHLAVIALSQYCVELWNIDSRLKVAD 877
Query: 650 AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682
GH + GV F PD ++ D RV E
Sbjct: 878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP 578
H+ AV F+ +G++I SC AD++L V I A + V
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK------AHEDEVLCCAFSS 667
Query: 579 TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC- 637
+ T DKK+ + A GKL+ ++ + + + T + S L+ + SN
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLK 726
Query: 638 LYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
L+D E GH + F PD + + S DG R+
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 143/378 (37%), Gaps = 50/378 (13%)
Query: 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSAC---IWDIKNLGCENM---HDPS 372
S + KLV Y +HS V H N++ + + +WD+ C N H S
Sbjct: 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745
Query: 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIF 432
V+ R ++CSADGT+RLWD+ +E +S+N++ +
Sbjct: 746 VN-HCRFSPDDELLASCSADGTLRLWDVRSANE-------RKSINVKRFFLSSEDPPEDV 797
Query: 433 ERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD----AEIXXXXXXXXXKKD----DVLEE 484
E S S G + + V+++ LL D H AEI D D L
Sbjct: 798 EVIVKCCSWSADGDK-IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 856
Query: 485 VTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544
+ S Y + D + + D + H + V V F+ +G L+ S D+++
Sbjct: 857 IALSQYCVELWNIDSRLKVADCR----------GHLSWVHGVMFSPDGSSFLTASDDQTI 906
Query: 545 VVRDV--VETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL 602
V + V NSA + + + + + +D + + G+ +I+ A
Sbjct: 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966
Query: 603 IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
+ P Y+ + +I + + + + + +GH + + + F
Sbjct: 967 ---------------CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011
Query: 663 LPDCKHIVSVGGDGLQRV 680
D K ++S D + +V
Sbjct: 1012 TADGKTLISSSEDSVIQV 1029
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 22/193 (11%)
Query: 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV 106
LCC A S D Y+A + + V +WD A + H V C F+ HL+
Sbjct: 661 LCC-AFSSDDSYIATCSADKK--VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 107 GG----YIYLW--NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVT-AGKKHLKFWTIG 159
G ++ LW N + M NS + FS D + + + + L+ W +
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNS----VNHCRFSPDDELLASCSADGTLRLWDV- 772
Query: 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYA 219
SA R +N L+ P E V V +W+ +G A ++
Sbjct: 773 RSANERKSINVKRFFLSSEDPP-------EDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825
Query: 220 LTDAGILYIVHSG 232
+ +G+L +H+G
Sbjct: 826 IHTSGLLAEIHTG 838
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 49 CVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG- 107
C +S YVA G+ A+ + + N S GH V I F+ DG+ L++
Sbjct: 966 CCCLSPHLEYVAFGDE--DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 108 -GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATAR 165
I +WNW++ V L+A+ + D++ + + +K W + + R
Sbjct: 1024 DSVIQVWNWQTGDYVF-LQAHQ--ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER 1079
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 67 QPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVT 105
Q V +W+ + +++ +GHL V + FSPDG +T
Sbjct: 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT 899
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 86 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 137
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 96 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 153
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 154 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 206
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 54 RDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIY 111
R+ Y +S P P N A L GH V + FSP+GE L + I
Sbjct: 11 RENLYFQGTQSKPTPVK-----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIK 65
Query: 112 LWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+W + + I+ +SSD+ +V+A K LK W + S +T
Sbjct: 66 IWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 119
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 192 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 248
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 249 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 307
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 308 E-NIIASAALENDKTIKLW 325
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 88 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 144
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 145 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 166 TRLN 169
T ++
Sbjct: 203 TLID 206
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 72 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 123
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 139
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 140 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 77 NLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAMLVMKLKANSSCSAIT 134
N A L GH V + FSP+GE L + I +W + + I+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGIS 72
Query: 135 SACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+SSD+ +V+A K LK W + S +T
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 178 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 234
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSAC 137
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTAC 290
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 74 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 130
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 166 TRLN 169
T ++
Sbjct: 189 TLID 192
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 27 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 139
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 140 -----KTGKCLKTLPAHSDPV 155
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + S SAD+ + + + IS +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 72 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 123
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 139
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 140 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 77 NLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAMLVMKLKANSSCSAIT 134
N A L GH V + FSP+GE L + I +W + + I+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGIS 72
Query: 135 SACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+SSD+ +V+A K LK W + S +T
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 178 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 234
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSAC 137
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTAC 290
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 74 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 130
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 166 TRLN 169
T ++
Sbjct: 189 TLID 192
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++A+ S + +W + F + GH G+ +A+S D LV
Sbjct: 27 KAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 139
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 140 -----KTGKCLKTLPAHSDPV 155
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL 565
VK N+ L ++ H+ AV++VKF+ NG + + SAD+ + + + IS +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 566 ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625
+ D+ ++++ DK + + +++GK +++ K ++ +P +
Sbjct: 72 S------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSN 123
Query: 626 YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680
+V ++S+ ++D +G+ + H + ++ V F D IVS DGL R+
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
L S D+T+ ++DV ++++ HS V F I+S S D S+ + DV
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV- 139
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
+T K H S + + ++++ D + A+G+ +++
Sbjct: 140 KTGKCLKTLPAHSDPVSA-----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 611 DFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653
D P+ V P+G Y++ + + ++ L+D+ G+ + GH
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 77 NLAFISELKGHLYGVECIAFSPDGEHLV--TVGGYIYLWNWRSAMLVMKLKANSSCSAIT 134
N A L GH V + FSP+GE L + I +W + + I+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK--LGIS 72
Query: 135 SACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+SSD+ +V+A K LK W + S +T
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85
++D S ++ P P+ V S +G+Y+ A + +WD + +
Sbjct: 178 IWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYT 234
Query: 86 GHLYGVECI--AFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS 140
GH CI FS G + G +Y+WN ++ +V KL+ ++ I++AC +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPT 293
Query: 141 DAKFIVTAG---KKHLKFW 156
+ I +A K +K W
Sbjct: 294 E-NIIASAALENDKTIKLW 311
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY 109
VA S D + + + +WD ++ + LKGH V C F+P +L+ G +
Sbjct: 74 VAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 130
Query: 110 ---IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +W+ ++ + L A+S +++ F+ D IV++ L + W S +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 166 TRLN 169
T ++
Sbjct: 189 TLID 192
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + V S +G ++AA S + +W + F + GH G+ +A+S D LV
Sbjct: 27 KAVSSVKFSPNGEWLAA--SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 105 TVGG--YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSS 161
+ + +W+ S + LK +S + + F+ + IV+ + ++ W +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV--- 139
Query: 162 ATARTRLNKGTESLTLHAKPV 182
+ K ++L H+ PV
Sbjct: 140 -----KTGKCLKTLPAHSDPV 155
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE 551
+ +G D T+ ++DV +++ ++ H AV ++F N +++CS DRS+ V D+
Sbjct: 186 IITGSSDSTVRVWDVNTG-EMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMA- 241
Query: 552 TNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK- 610
S I+ R + + V +D D + +++ D+ I ++ + + +R+ K
Sbjct: 242 --SPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297
Query: 611 -----DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD 665
+ D + V SGS S+ +I L+D G + GH E++ + F D
Sbjct: 298 GIACLQYRDRLVV----SGS------SDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345
Query: 666 CKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPII 702
K IVS DG +V + L PR A L ++
Sbjct: 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 24 LVVYDVDSSTQ---SHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF 80
+ V+D+ S T ++V HR + + D +Y+ + SG + + VW+ + F
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNV----VDFDDKYIVSA-SGDR-TIKVWNTSTCEF 288
Query: 81 ISELKGHLYGVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSAC 137
+ L GH G+ C+ + + LV G I LW+ + L+ + C
Sbjct: 289 VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVRC 341
Query: 138 FSSDAKFIVT-AGKKHLKFWTIGSSATAR 165
D K IV+ A +K W + ++ R
Sbjct: 342 IRFDNKRIVSGAYDGKIKVWDLVAALDPR 370
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 52/215 (24%)
Query: 244 KNGFALSASSKLIACACSNGAVHLFDIQSLK-------HAGT---LHYSEAKKCNGENDT 293
K + L + I + + ++D +L+ H G+ L Y E G +D+
Sbjct: 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDS 193
Query: 294 ---VSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVL 350
V E+ L + +F+ +V D S+ VWD+ + T VL
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 351 VSHSAC---------------------IWDIKNLGCE-----NMHDPSVSCVA---RGCT 381
V H A +W+ CE N H ++C+ R
Sbjct: 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST--CEFVRTLNGHKRGIACLQYRDRLVV 310
Query: 382 GGVSFSTCSADGTIRLWDLALQSELSKDVLGHESL 416
G S+D TIRLWD+ + L + + GHE L
Sbjct: 311 SG------SSDNTIRLWDIECGACL-RVLEGHEEL 338
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 72 VWDCANLAFISELKGHLYGVECIAFSPDGEHLVT--VGGYIYLWNWRSAMLVMKLKANSS 129
+W L + EL+GH V C AFS D L T G I +WN + L+ S
Sbjct: 1117 IWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSE 1176
Query: 130 CSA------ITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKP 181
A +T CFS D K +++AG ++K+W + + +++T GT +H P
Sbjct: 1177 EGAATHGGWVTDLCFSPDGKMLISAG-GYIKWWNVVTGESSQTFYTNGTNLKKIHVSP 1233
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/404 (20%), Positives = 150/404 (37%), Gaps = 52/404 (12%)
Query: 290 ENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCV 349
E++ + A +T+ F T ++ + S + +LV Y +HS V H N + +
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 350 LVSHSAC---IWDIKNLGCENM---HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQ 403
S C +WD+ C N H SV+ R ++CSADGT++LWD
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVN-HCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 404 SELSKDVLGHESLNIE-PMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462
+E + LN+E P ++ S S G R M V+++ L D
Sbjct: 782 NERKSINVKQFFLNLEDPQEDMEVIVKC--------CSWSADGARIM-VAAKNKIFLFDI 832
Query: 463 HDA----EIXXXXXXXXXKKD----DVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIE 514
H + EI D + L V S Y + D + D +
Sbjct: 833 HTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCR------- 885
Query: 515 SIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDV--VETNSAYKISRRHQQLASQGTVY 572
H + V V F+ +G L+ S D+++ + + V NSA + + + + V
Sbjct: 886 ---GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVM 942
Query: 573 DMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632
+ +D + + G+ +I+ + A + P Y+
Sbjct: 943 VLAVDHIRRLQLINGRTGQIDYLTEAQVSC---------------CCLSPHLQYIAFGDE 987
Query: 633 NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676
N +I + + ++ + H + + + F D K ++S D
Sbjct: 988 NGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDA 1031
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 22/207 (10%)
Query: 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548
H LA+G D + L+D+ + + ++ H+ +V +F+ + + + SCSAD +L + D
Sbjct: 719 HLLLATGSSDCFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 549 VVETNSAYKISRRHQQLASQGTVYDMDID------PTMEVVITVGQDKKINSFSIAAGKL 602
N I+ + L + DM++ I V KI F I L
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGL 837
Query: 603 I-------RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGE 655
+ S Q DF P V + S + L++ S VA GH
Sbjct: 838 LGEIHTGHHSTIQYCDFS--------PQNHLAVVALSQYCVELWNTDSRSKVADCRGHLS 889
Query: 656 VITGVTFLPDCKHIVSVGGDGLQRVKE 682
+ GV F PD ++ D R+ E
Sbjct: 890 WVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 23/216 (10%)
Query: 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV 106
LCC A S D R++A V +W+ + H V C F+ HL+
Sbjct: 667 LCC-AFSTDDRFIAT--CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLA 723
Query: 107 GG----YIYLW--NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVT-AGKKHLKFWTIG 159
G ++ LW N + M NS + FS D K + + + LK W
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNS----VNHCRFSPDDKLLASCSADGTLKLWD-A 778
Query: 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYA 219
+SA R +N L NL +E V V +W+ +G A ++
Sbjct: 779 TSANERKSINVKQFFL-------NLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFD 831
Query: 220 LTDAGILYIVHSG-LSVTKSVDLKVKNGFALSASSK 254
+ +G+L +H+G S + D +N A+ A S+
Sbjct: 832 IHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQ 867
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 49 CVAMSRDGRYVAAGESGPQPAVLVWDCAN------LAFISELKGHLYG--VECIAFSPDG 100
C A S D +A G+ + + +W+ +N A +SE +G V + FSPDG
Sbjct: 1138 CSAFSVDSTLLATGDDNGE--IRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDG 1195
Query: 101 EHLVTVGGYIYLWN 114
+ L++ GGYI WN
Sbjct: 1196 KMLISAGGYIKWWN 1209
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 6/158 (3%)
Query: 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP 578
H+ AV F+ +G++I SC AD++L V +I A + V
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIK------AHEDEVLCCAFST 673
Query: 579 TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICL 638
+ T DKK+ ++ G+L+ ++ + + + T L S+ + L
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 639 YDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676
+D E GH + F PD K + S DG
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADG 771
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 124/323 (38%), Gaps = 50/323 (15%)
Query: 383 GVSFSTCSADGTIRLWD---------LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFE 433
G SF T S D TIRLW+ + L+ E+ DV+ E+ + ++ H+ +
Sbjct: 900 GSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEV--DVVFQEN-EVMVLAVDHIRRLQLIN 956
Query: 434 RNTMETSVSTQGYRSMAVSS-----------RGSTLLLDAHDAEIXXXXXXXXXKKDDVL 482
T + T+ S S G+ +L+ + I KK
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQH--KKTVWH 1014
Query: 483 EEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR 542
+ T L S D I +++ + D + H V + N R +LS S D
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQ--LDKCIFLRGHQETVKDFRLLKNSR-LLSWSFDG 1071
Query: 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDI--DPTMEVVITVGQDKKINSFSIAAG 600
++ V +++ N + + QGTV DI D T + + KI SF
Sbjct: 1072 TVKVWNIITGN------KEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFD---- 1121
Query: 601 KLIRSFKQAKDFGDPMKVTVDPSGSYLVCS-YSNKSICLYDFISGEMV--------AKAM 651
L+ + + ++ + S L+ + N I +++ +GE++ A
Sbjct: 1122 -LLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 652 GHGEVITGVTFLPDCKHIVSVGG 674
HG +T + F PD K ++S GG
Sbjct: 1181 THGGWVTDLCFSPDGKMLISAGG 1203
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 67 QPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLW 113
Q V +W+ + + +++ +GHL V + FSPDG +T I LW
Sbjct: 867 QYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 11/183 (6%)
Query: 485 VTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544
++++ F S D ++ L++++ N H+ V +V F+ + R+I+S D +L
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQ-NGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNAL 133
Query: 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME--VVITVGQDKKINSFSIAAGKL 602
V +V + + +SR A V + P+++ V+++ G D + + +A G+L
Sbjct: 134 RVWNV-KGECMHTLSRG----AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 603 IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
+ K ++ VTV P GS S + L+D GE +++ M G I + F
Sbjct: 189 VTDLKGHTNY--VTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE-MAAGAPINQICF 245
Query: 663 LPD 665
P+
Sbjct: 246 SPN 248
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 516 IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMD 575
++ HSA V+ V + NG +S S D SL + ++ YK L V +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF------LGHTKDVLSVA 116
Query: 576 IDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK--DFGDPMKVTVDPSGSYLVCSYSN 633
P +++ G+D + +++ G+ + + + D+ ++ + +V +
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 634 KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFA 693
+ ++D +G +V GH +T VT PD S DG+ R+ + + +
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL---WDLTKGEALS 232
Query: 694 QPAALSPI 701
+ AA +PI
Sbjct: 233 EMAAGAPI 240
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 70 VLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV--GGYIYLWNWRSAMLVMKLKAN 127
V VWD A +++LKGH V + SPDG + G LW+ + ++ A
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG 237
Query: 128 SSCSAITSACFSSDAKFIVTAGKKHLKF 155
+ I CFS + ++ A +K ++
Sbjct: 238 ---APINQICFSPNRYWMCAATEKGIRI 262
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-- 107
VA+S +G + + ++ +W+ N + GH V +AFSPD +V+ G
Sbjct: 73 VALSNNGNFAVSASW--DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 108 GYIYLWNWRS-AMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL-KFWTIGSSATAR 165
+ +WN + M + A++ + S DA IV+ G +L K W + AT R
Sbjct: 131 NALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL---ATGR 187
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 491 FLASGGRDRTIHLYDV---KRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
L S RD+T+ + + + F + + S HS V T +G LS S D++L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
DV T Y+ H+ V +DID ++I+ +DK I ++I G+ + +
Sbjct: 92 WDVA-TGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 607 KQAKDFGDPMKVT----VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
D+ ++V D ++ + ++K + ++ ++ A +GH I +T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 663 LPDCKHIVSVGGDG 676
PD I S G DG
Sbjct: 205 SPDGTLIASAGKDG 218
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 374 SCVARGCT---GGVSFSTCSADGTIRLWDLALQSELSKDVLGHES--LNIEPMSTAHLVS 428
S + + CT G + S D T+RLWD+A E + +GH+S ++++ A ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 429 AGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDS 488
+G ++ ++ Q +TLL H+ + K DD + VT
Sbjct: 124 SGSRDKTIKVWTIKGQCL---------ATLL--GHNDWVSQVRVVPNEKADD--DSVT-- 168
Query: 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548
+ S G D+ + +++ + F + H++ + + + +G I S D +++ +
Sbjct: 169 ---IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 549 VVETNSAYKISRRHQ 563
+ + Y +S + +
Sbjct: 225 LAAKKAMYTLSAQDE 239
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 64 SGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV 121
+G V W+ ++ GH + + SPDG + + G G I LWN + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 122 MKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
L A + S FS + ++ A +K +++
Sbjct: 232 YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 491 FLASGGRDRTIHLYDV---KRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
L S RD+T+ + + + F + + S HS V T +G LS S D++L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
DV T Y+ H+ V +DID ++I+ +DK I ++I G+ + +
Sbjct: 92 WDVA-TGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 607 KQAKDFGDPMKVT----VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
D+ ++V D ++ + ++K + ++ ++ A +GH I +T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 663 LPDCKHIVSVGGDG 676
PD I S G DG
Sbjct: 205 SPDGTLIASAGKDG 218
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 374 SCVARGCT---GGVSFSTCSADGTIRLWDLALQSELSKDVLGHES--LNIEPMSTAHLVS 428
S + + CT G + S D T+RLWD+A E + +GH+S ++++ A ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 429 AGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDS 488
+G ++ ++ Q +TLL H+ + K DD + VT
Sbjct: 124 SGSRDKTIKVWTIKGQCL---------ATLL--GHNDWVSQVRVVPNEKADD--DSVT-- 168
Query: 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548
+ S G D+ + +++ + F + H++ + + + +G I S D +++ +
Sbjct: 169 ---IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 549 VVETNSAYKISRRHQ 563
+ + Y +S + +
Sbjct: 225 LAAKKAMYTLSAQDE 239
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 64 SGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV 121
+G V W+ ++ GH + + SPDG + + G G I LWN + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 122 MKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
L A + S FS + ++ A +K +++
Sbjct: 232 YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 491 FLASGGRDRTIHLYDV---KRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
L S RD+T+ + + + F + + S HS V T +G LS S D++L +
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
DV T Y+ H+ V +DID ++I+ +DK I ++I G+ + +
Sbjct: 86 WDVA-TGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 138
Query: 607 KQAKDFGDPMKVT----VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
D+ ++V D ++ + ++K + ++ ++ A +GH I +T
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 198
Query: 663 LPDCKHIVSVGGDG 676
PD I S G DG
Sbjct: 199 SPDGTLIASAGKDG 212
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 374 SCVARGCT---GGVSFSTCSADGTIRLWDLALQSELSKDVLGHES--LNIEPMSTAHLVS 428
S + + CT G + S D T+RLWD+A E + +GH+S ++++ A ++
Sbjct: 59 SHIVQDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 429 AGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDS 488
+G ++ ++ Q +TLL H+ + K DD + VT
Sbjct: 118 SGSRDKTIKVWTIKGQCL---------ATLL--GHNDWVSQVRVVPNEKADD--DSVT-- 162
Query: 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548
+ S G D+ + +++ + F + H++ + + + +G I S D +++ +
Sbjct: 163 ---IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 549 VVETNSAYKISRRHQ 563
+ + Y +S + +
Sbjct: 219 LAAKKAMYTLSAQDE 233
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 64 SGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV 121
+G V W+ ++ GH + + SPDG + + G G I LWN + +
Sbjct: 166 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Query: 122 MKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
L A + S FS + ++ A +K +++
Sbjct: 226 YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 491 FLASGGRDRTIHLYDV---KRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
L S RD+T+ + + + F + + S HS V T +G LS S D++L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
DV T Y+ H+ V +DID ++I+ +DK I ++I G+ + +
Sbjct: 92 WDVA-TGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 607 KQAKDFGDPMKVT----VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
D+ ++V D ++ + ++K + ++ ++ A +GH I +T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 663 LPDCKHIVSVGGDG 676
PD I S G DG
Sbjct: 205 SPDGTLIASAGKDG 218
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 374 SCVARGCT---GGVSFSTCSADGTIRLWDLALQSELSKDVLGHES--LNIEPMSTAHLVS 428
S + + CT G + S D T+RLWD+A E + +GH+S ++++ A ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 429 AGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDS 488
+G ++ ++ Q +TLL H+ + K DD + VT
Sbjct: 124 SGSRDKTIKVWTIKGQCL---------ATLL--GHNDWVSQVRVVPNEKADD--DSVT-- 168
Query: 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548
+ S G D+ + +++ + F + H++ + + + +G I S D +++ +
Sbjct: 169 ---IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 549 VVETNSAYKISRRHQ 563
+ + Y +S + +
Sbjct: 225 LAAKKAMYTLSAQDE 239
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 64 SGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV 121
+G V W+ ++ GH + + SPDG + + G G I LWN + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 122 MKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
L A + S FS + ++ A +K +++
Sbjct: 232 YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 491 FLASGGRDRTIHLYDV---KRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
L S RD+T+ + + + F + + S HS V T +G LS S D++L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
DV T Y+ H+ V +DID ++I+ +DK I ++I G+ + +
Sbjct: 92 WDVA-TGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 607 KQAKDFGDPMKVT----VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
D+ ++V D ++ + ++K + ++ ++ A +GH I +T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 663 LPDCKHIVSVGGDG 676
PD I S G DG
Sbjct: 205 SPDGTLIASAGKDG 218
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 374 SCVARGCT---GGVSFSTCSADGTIRLWDLALQSELSKDVLGHES--LNIEPMSTAHLVS 428
S + + CT G + S D T+RLWD+A E + +GH+S ++++ A ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 429 AGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDS 488
+G ++ ++ Q +TLL H+ + K DD + VT
Sbjct: 124 SGSRDKTIKVWTIKGQCL---------ATLL--GHNDWVSQVRVVPNEKADD--DSVT-- 168
Query: 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548
+ S G D+ + +++ + F + H++ + + + +G I S D +++ +
Sbjct: 169 ---IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 549 VVETNSAYKISRRHQ 563
+ + Y +S + +
Sbjct: 225 LAAKKAMYTLSAQDE 239
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 64 SGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV 121
+G V W+ ++ GH + + SPDG + + G G I LWN + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 122 MKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
L A + S FS + ++ A +K +++
Sbjct: 232 YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 491 FLASGGRDRTIHLYDV---KRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
L S RD+T+ + + + F + + S HS V T +G LS S D++L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606
DV T Y+ H+ V +DID +I+ +DK I ++I G+ + +
Sbjct: 92 WDVA-TGETYQRFVGHKS-----DVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL 144
Query: 607 KQAKDFGDPMKVT----VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF 662
D+ ++V D ++ + ++K + ++ ++ A +GH I +T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 663 LPDCKHIVSVGGDG 676
PD I S G DG
Sbjct: 205 SPDGTLIASAGKDG 218
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 64 SGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV 121
+G V W+ ++ GH + + SPDG + + G G I LWN +
Sbjct: 172 AGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAX 231
Query: 122 MKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
L A + S FS + ++ A +K +++
Sbjct: 232 YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 119/285 (41%), Gaps = 57/285 (20%)
Query: 357 IWDIKNLGCENM---HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGH 413
+WD + E H SV ++ +G + ++CSAD TI+LWD E + + GH
Sbjct: 134 VWDYETGDFERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQ-GFECIRTMHGH 191
Query: 414 E----SLNIEPMSTAHLVSAG------IFERNTMETSVSTQGYRS---MAVSSRGSTLLL 460
+ S++I P + H+VSA ++E T + G+R M ++ TL+
Sbjct: 192 DHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA 250
Query: 461 D-AHDAEIXXXXXXXXXKKDDVLE--------------------EVTDSHY--------F 491
++D + K ++ E E T S F
Sbjct: 251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310
Query: 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE 551
L SG RD+TI ++DV L+ ++ H V V F G+ ILSC+ D++L V D
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLM-TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD--- 366
Query: 552 TNSAYKISRRHQQL-ASQGTVYDMDIDPTMEVVITVGQDKKINSF 595
YK R + L A + V +D T V+T D+ + +
Sbjct: 367 ----YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 18/219 (8%)
Query: 477 KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGR--- 533
++D++ + D +L S G + ++ + D+ E +D A + K+T R
Sbjct: 7 QRDELNRAIAD---YLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 63
Query: 534 KILSCSADRSLVVRDVV-------ETNSAYKISRRHQQLASQG---TVYDMDIDPTMEVV 583
K++ + + + + + I R ++ A G V + P V+
Sbjct: 64 KVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVM 123
Query: 584 ITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643
++ +D I + G R+ K D ++ D SG L ++ +I L+DF
Sbjct: 124 VSASEDATIKVWDYETGDFERTLKGHTD--SVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 644 GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682
E + GH ++ V+ +P+ HIVS D ++ E
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/174 (18%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE 551
+ S D TI ++D + D ++ H+ +V + F +G+ + SCSAD ++ + D
Sbjct: 123 MVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF-- 179
Query: 552 TNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKD 611
++ R V + I P + +++ +DK I + + G +++F ++
Sbjct: 180 --QGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235
Query: 612 FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD 665
+ ++ D G+ + +++++ ++ + E A+ H V+ +++ P+
Sbjct: 236 WVRMVRPNQD--GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 33/138 (23%)
Query: 42 RMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPD-- 99
RM +P ++DG +A+ + V VW A +EL+ H + VECI+++P+
Sbjct: 238 RMVRP------NQDGTLIASCSN--DQTVRVWVVATKECKAELREHRHVVECISWAPESS 289
Query: 100 ------------------GEHLV--TVGGYIYLWNWRSAMLVMKLKANSSCSAITSACFS 139
G L+ + I +W+ + M +M L + + + F
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW--VRGVLFH 347
Query: 140 SDAKFIVT-AGKKHLKFW 156
S KFI++ A K L+ W
Sbjct: 348 SGGKFILSCADDKTLRVW 365
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 70 VLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWNWRSAMLVMKLKAN 127
+ VWD F LKGH V+ I+F G+ L + I LW+++ + + +
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 128 SSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATART 166
++S + IV+A + K +K W + + +T
Sbjct: 192 D--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 229
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
K + +A S DG+Y+A+G + ++D A + L+GH + + FSPD + LV
Sbjct: 165 KFILSIAYSPDGKYLASG--AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 105 TVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSA 162
T GYI +++ + A L L ++S + C D F+ ++ K +K W +G+
Sbjct: 223 TASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC-PDDTHFVSSSSDKSVKVWDVGTRT 281
Query: 163 TARTRLN 169
T +
Sbjct: 282 CVHTFFD 288
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 9/192 (4%)
Query: 492 LASGGRDRTIHLYDVK-RNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
+ +G D + ++ + DL S++ H V +V + S S D + + D+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610
I A + + P + + T K+N F + +GK S
Sbjct: 111 NGKQIKSID------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164
Query: 611 DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIV 670
F + + P G YL + I ++D +G+++ GH I +TF PD + +V
Sbjct: 165 KF--ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 671 SVGGDGLQRVKE 682
+ DG ++ +
Sbjct: 223 TASDDGYIKIYD 234
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 15/180 (8%)
Query: 493 ASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVET 552
AS D I L+D++ N I+SID + F+ + + + + + + + V
Sbjct: 96 ASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154
Query: 553 NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDF 612
Y + R + + S + P + + + D IN F IA GKL+ + +
Sbjct: 155 KKEYSLDTRGKFILS------IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE----- 203
Query: 613 GDPMKV---TVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHI 669
G M + T P LV + + I +YD + GH + V F PD H
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 74/177 (41%), Gaps = 31/177 (17%)
Query: 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVST--- 443
++ S D IRLWDL E K + ++ ++ + A + T V+
Sbjct: 96 ASSSLDAHIRLWDL----ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151
Query: 444 -QGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTIH 502
G + ++ +RG +L A+ + +LASG D I+
Sbjct: 152 ESGKKEYSLDTRGKFILSIAYSPDGK----------------------YLASGAIDGIIN 189
Query: 503 LYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKIS 559
++D+ L+ +++ H+ + ++ F+ + + +++ S D + + DV N A +S
Sbjct: 190 IFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 70 VLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKAN 127
V VW+ +N S L GH V +A SPDG + G G + LW+ + L+AN
Sbjct: 543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 128 SSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSA 162
S A+ CFS + ++ A + +K W + S +
Sbjct: 603 SVIHAL---CFSPNRYWLCAATEHGIKIWDLESKS 634
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 519 HSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDID 577
H+ VTA+ N I+S S D+S+++ + + + AY +++R S V D+ +
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLS 439
Query: 578 PTMEVVITVGQDKKINSFSIAAGKLIRSF-KQAKDFGDPMKVTVDPSGSYLVCSYSNKSI 636
+ ++ D ++ + +AAG R F KD + V +V + +++I
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV---LSVAFSLDNRQIVSASRDRTI 496
Query: 637 CLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676
L++ L +CK+ +S GG+G
Sbjct: 497 KLWN---------------------TLGECKYTISEGGEG 515
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550
F S D+T+ L+D+ R + H + V +V F+ + R+ILS A+R + + +++
Sbjct: 90 FAISSSWDKTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
Query: 551 ----------ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG 600
E +S + R+ + + P +VG D ++ ++
Sbjct: 149 GECKFSSAEKENHSDWVSCVRYSPIMKSAN----KVQPFAPYFASVGWDGRLKVWNTNF- 203
Query: 601 KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGV 660
++ +FK + + +++ P+G Y+ +K + ++D ++ + G I +
Sbjct: 204 QIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261
Query: 661 TFLPDCKHIVSVGGD 675
F P + V+VG D
Sbjct: 262 AFNPKLQW-VAVGTD 275
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 72 VWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG--YIYLWN 114
+WD GH V +AFSPD +++ G I LWN
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 10/206 (4%)
Query: 490 YFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDV 549
Y L+SG R IH +DV+ + ++ HS V +++ +GR + S D + V
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 550 VETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG---QDKKINSFSIAAGKLIRSF 606
+ + Q QG V + P V+ G D+ I +++ +G + +
Sbjct: 260 APGEGGWVPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317
Query: 607 KQAKDFGDPMKVTVDPSGSYLVC--SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP 664
+ P L+ ++ + ++ + + VA+ GH + +T P
Sbjct: 318 DAHSQV---CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374
Query: 665 DCKHIVSVGGDGLQRVKEKYGILPPR 690
D + S D R+ + + P R
Sbjct: 375 DGATVASAAADETLRLWRCFELDPAR 400
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV 106
+C + S + + +G Q +++W +A ++ELKGH V + SPDG + +
Sbjct: 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382
Query: 107 GGYIYLWNWR 116
L WR
Sbjct: 383 AADETLRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 10/206 (4%)
Query: 490 YFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDV 549
Y L+SG R IH +DV+ + ++ HS V +++ +GR + S D + V
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 550 VETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG---QDKKINSFSIAAGKLIRSF 606
+ + Q QG V + P V+ G D+ I +++ +G + +
Sbjct: 271 APGEGGWVPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 328
Query: 607 KQAKDFGDPMKVTVDPSGSYLVC--SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP 664
+ P L+ ++ + ++ + + VA+ GH + +T P
Sbjct: 329 DAHSQV---CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 385
Query: 665 DCKHIVSVGGDGLQRVKEKYGILPPR 690
D + S D R+ + + P R
Sbjct: 386 DGATVASAAADETLRLWRCFELDPAR 411
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV 106
+C + S + + +G Q +++W +A ++ELKGH V + SPDG + +
Sbjct: 334 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 393
Query: 107 GGYIYLWNWR 116
L WR
Sbjct: 394 AADETLRLWR 403
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 50 VAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGG- 108
V S DG+++A G + +WD N + L+GH + + + P G+ LV+ G
Sbjct: 129 VCFSPDGKFLATG--AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 109 -YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATART 166
+ +W+ R+ + L + + A D K+I + ++ W +
Sbjct: 187 RTVRIWDLRTGQCSLTLSIEDGVTTV--AVSPGDGKYIAAGSLDRAVRVWD-SETGFLVE 243
Query: 167 RLNKGTESLTLHAKPV 182
RL+ ES T H V
Sbjct: 244 RLDSENESGTGHKDSV 259
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 20/130 (15%)
Query: 47 LCCVAMSRDGRYVAAG----------ESGPQPAVLVWDCA------NLAFISELKGHLYG 90
+CCV S DG Y+A G G A L D A NL S LY
Sbjct: 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY- 125
Query: 91 VECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTA 148
+ + FSPDG+ L T I +W+ + +VM L+ + + F S K + +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGS 184
Query: 149 GKKHLKFWTI 158
G + ++ W +
Sbjct: 185 GDRTVRIWDL 194
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 18/90 (20%)
Query: 87 HLYGVECIAFSPDGEHLVT-VGGYIYLWNWRSAMLVMKLKANSSCSA------------- 132
H V C+ FS DGE+L T ++ LV +L +S+ +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 133 ---ITSACFSSDAKFIVTAGKKHL-KFWTI 158
I S CFS D KF+ T + L + W I
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 618 VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGL 677
V P G +L ++ I ++D + ++V GH + I + + P +VS GD
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 678 QRV 680
R+
Sbjct: 189 VRI 191
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 10/204 (4%)
Query: 490 YFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDV 549
Y L+SG R IH +DV+ + ++ HS V +++ +GR + S D + V
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 550 VETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG---QDKKINSFSIAAGKLIRSF 606
+ + Q QG V + P V+ G D+ I +++ +G + +
Sbjct: 180 APGEGGWVPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237
Query: 607 KQAKDFGDPMKVTVDPSGSYLVC--SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP 664
+ P L+ ++ + ++ + + VA+ GH + +T P
Sbjct: 238 DAHSQV---CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294
Query: 665 DCKHIVSVGGDGLQRVKEKYGILP 688
D + S D R+ + + P
Sbjct: 295 DGATVASAAADETLRLWRCFELDP 318
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDG 100
+C + S + + +G Q +++W +A ++ELKGH V + SPDG
Sbjct: 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 38/217 (17%)
Query: 388 TCSADGTIRLWDLALQSELSKDV------LGHESLNIEPMSTAHLVSAGIFERNTMETSV 441
+ S D T+ LWD+ + K V GH ++ +E ++ HL+ +F + +
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAV-VEDVA-WHLLHESLFGSVADDQKL 254
Query: 442 STQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTI 501
RS S + L+DAH AE+ + L S + LA+G D+T+
Sbjct: 255 XIWDTRSNTTSK--PSHLVDAHTAEV------------NCLSFNPYSEFILATGSADKTV 300
Query: 502 HLYDVKRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKIS 559
L+D+ RN L + + + H + V ++ + IL+ S DR L V D+
Sbjct: 301 ALWDL-RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL---------- 349
Query: 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596
++ + + D + P + I G KI+ FS
Sbjct: 350 ---SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFS 383
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 53/259 (20%)
Query: 388 TCSADGTIRLWDLALQSELSKDV------LGHESLNIEPMSTAHLVSAGIFERNTMETSV 441
+ S D TI LWD++ + K V GH ++ +E +S HL+ +F + +
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAV-VEDVS-WHLLHESLFGSVADDQKL 252
Query: 442 STQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTI 501
RS S ++ DAH AE+ + L S + LA+G D+T+
Sbjct: 253 MIWDTRSNNTSKPSHSV--DAHTAEV------------NCLSFNPYSEFILATGSADKTV 298
Query: 502 HLYDVKRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKIS 559
L+D+ RN L + S + H + V+++ + IL+ S DR L V D+
Sbjct: 299 ALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL---------- 347
Query: 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSF-----------SIAAGKLIRSFKQ 608
++ + + D + P + I G KI+ F S++ +++ ++
Sbjct: 348 ---SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Query: 609 AKDF---GDPMKVTVDPSG 624
A++ DP + +VDP G
Sbjct: 405 AENIYNDEDP-EGSVDPEG 422
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 326 VVYGDHSLYVWDI--HDVNEATRCCVLVSHSACIWDIKNLGCE------NMHDPSVSCVA 377
++ H+ V D+ H ++E+ V IWD ++ + H V+C++
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 280
Query: 378 RGCTGGVSFSTCSADGTIRLWDL 400
+T SAD T+ LWDL
Sbjct: 281 FNPYSEFILATGSADKTVALWDL 303
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 123/326 (37%), Gaps = 48/326 (14%)
Query: 330 DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC 389
D S VW + +N R L H+ IW I V C + C G
Sbjct: 53 DSSASVW--YSLN-GERLGTLDGHTGTIWSI-----------DVDCFTKYCVTG------ 92
Query: 390 SADGTIRLWDLALQSELS--KDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447
SAD +I+LWD++ ++ K + + + P L I + N M+ S Y
Sbjct: 93 SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLA---ILD-NVMKNPGSINIYE 148
Query: 448 SMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTIHLYDVK 507
S+ + L + I V T Y +A G +D I YDV
Sbjct: 149 IERDSA--THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA-GHKDGKISKYDVS 205
Query: 508 RNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567
N++ ++SID H +++ ++F+ + ++ S D + + DV S ++ ++++
Sbjct: 206 NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV----STLQVLKKYETDCP 261
Query: 568 QGTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGKLIRSF----------KQAKDFGDP 615
T I P E +I G + K + + S GK F + FG
Sbjct: 262 LNTAV---ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318
Query: 616 MKVTVDPSGSYLVCSYSNKSICLYDF 641
V + P G+ + I L+ F
Sbjct: 319 NTVAISPQGTSYASGGEDGFIRLHHF 344
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 19/120 (15%)
Query: 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS----QGTVYDM 574
H +T VK+ G + SCS D S V S ++L + GT++ +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVW----------YSLNGERLGTLDGHTGTIWSI 80
Query: 575 DIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMK-VTVDPSGSYLVCSYSN 633
D+D + +T D I + ++ G+ + ++K P+K V P G+Y + N
Sbjct: 81 DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV----PVKRVEFSPCGNYFLAILDN 136
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 38/217 (17%)
Query: 388 TCSADGTIRLWDLALQSELSKDV------LGHESLNIEPMSTAHLVSAGIFERNTMETSV 441
+ S D T+ LWD+ + K V GH ++ +E ++ HL+ +F + +
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAV-VEDVA-WHLLHESLFGSVADDQKL 254
Query: 442 STQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTI 501
RS S + L+DAH AE+ + L S + LA+G D+T+
Sbjct: 255 MIWDTRSNTTSK--PSHLVDAHTAEV------------NCLSFNPYSEFILATGSADKTV 300
Query: 502 HLYDVKRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKIS 559
L+D+ RN L + + + H + V ++ + IL+ S DR L V D+
Sbjct: 301 ALWDL-RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL---------- 349
Query: 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596
++ + + D + P + I G KI+ FS
Sbjct: 350 ---SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFS 383
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 388 TCSADGTIRLWDLALQSEL-----SKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVS 442
+ S D TI LWD+ + +K++ + +E ++ HL+ +F + +
Sbjct: 203 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-WHLLHESLFGSVADDQKLM 261
Query: 443 TQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTIH 502
R+ S T+ DAH AE+ + L S + LA+G D+T+
Sbjct: 262 IWDTRNNNTSKPSHTV--DAHTAEV------------NCLSFNPYSEFILATGSADKTVA 307
Query: 503 LYDVKRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKISR 560
L+D+ RN L + S + H + V+++ + IL+ S DR L V D+
Sbjct: 308 LWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL----------- 355
Query: 561 RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596
++ + + D + P + I G KI+ FS
Sbjct: 356 --SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 389
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 327 VYGDHSLYVWDI--HDVNEATRCCVLVSHSACIWDIKNLGCE------NMHDPSVSCVAR 378
++ H+ V D+ H ++E+ V IWD +N + H V+C++
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 379 GCTGGVSFSTCSADGTIRLWDL 400
+T SAD T+ LWDL
Sbjct: 290 NPYSEFILATGSADKTVALWDL 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 388 TCSADGTIRLWDLALQSEL-----SKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVS 442
+ S D TI LWD+ + +K++ + +E ++ HL+ +F + +
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-WHLLHESLFGSVADDQKLM 257
Query: 443 TQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTIH 502
R+ S T+ DAH AE+ + L S + LA+G D+T+
Sbjct: 258 IWDTRNNNTSKPSHTV--DAHTAEV------------NCLSFNPYSEFILATGSADKTVA 303
Query: 503 LYDVKRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKISR 560
L+D+ RN L + S + H + V+++ + IL+ S DR L V D+
Sbjct: 304 LWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL----------- 351
Query: 561 RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596
++ + + D + P + I G KI+ FS
Sbjct: 352 --SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 385
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 327 VYGDHSLYVWDI--HDVNEATRCCVLVSHSACIWDIKNLGCE------NMHDPSVSCVAR 378
++ H+ V D+ H ++E+ V IWD +N + H V+C++
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 379 GCTGGVSFSTCSADGTIRLWDL 400
+T SAD T+ LWDL
Sbjct: 286 NPYSEFILATGSADKTVALWDL 307
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 388 TCSADGTIRLWDLALQSEL-----SKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVS 442
+ S D TI LWD+ + +K++ + +E ++ HL+ +F + +
Sbjct: 201 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-WHLLHESLFGSVADDQKLM 259
Query: 443 TQGYRSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRDRTIH 502
R+ S T+ DAH AE+ + L S + LA+G D+T+
Sbjct: 260 IWDTRNNNTSKPSHTV--DAHTAEV------------NCLSFNPYSEFILATGSADKTVA 305
Query: 503 LYDVKRNFDL-IESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKISR 560
L+D+ RN L + S + H + V+++ + IL+ S DR L V D+
Sbjct: 306 LWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL----------- 353
Query: 561 RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596
++ + + D + P + I G KI+ FS
Sbjct: 354 --SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 387
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 327 VYGDHSLYVWDI--HDVNEATRCCVLVSHSACIWDIKNLGCE------NMHDPSVSCVAR 378
++ H+ V D+ H ++E+ V IWD +N + H V+C++
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 379 GCTGGVSFSTCSADGTIRLWDL 400
+T SAD T+ LWDL
Sbjct: 288 NPYSEFILATGSADKTVALWDL 309
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 106/259 (40%), Gaps = 46/259 (17%)
Query: 382 GGVSFSTCSADGTIRLWDLALQSELSKDVL--GHE----SLNIEPMSTAHLVSAG----- 430
G ++C D IR+W S + K VL GH+ + P +L SA
Sbjct: 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATT 85
Query: 431 -IFERNT--METSVSTQGY----RSMAVSSRGSTLLLDAHDAEIXXXXXXXXXKKD--DV 481
I+++N E + +G+ +S+A + G+ L + D + + + V
Sbjct: 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145
Query: 482 LEEVTD---------SHYFLASGGRDRTIHLY-DVKRNFDLIESIDDHSAAVTAVKFTCN 531
L T S LAS D T+ LY + + ++ +++ H + V ++ F +
Sbjct: 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205
Query: 532 GRKILSCSADRSL-VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK 590
G+++ SCS DR++ + R + N Q +A G+ DP+ + + T+
Sbjct: 206 GQRLASCSDDRTVRIWRQYLPGN--------EQGVACSGS------DPSWKCICTLSGFH 251
Query: 591 KINSFSIAAGKLIRSFKQA 609
+ IA +L + A
Sbjct: 252 SRTIYDIAWCQLTGALATA 270
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 44 PKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN---LAFISELKGHLYGVECIAFSPDG 100
P + VA S +G ++ A + + V+ + AN LA + H V C+++SPD
Sbjct: 491 PAEITSVAFSNNGAFLVATDQSRK--VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548
Query: 101 EHLVT--VGGYIYLWNW-RSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWT 157
L T + + +WN + + + +K + S++ S + ++ + ++KFW
Sbjct: 549 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Query: 158 I 158
+
Sbjct: 609 V 609
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 23/207 (11%)
Query: 482 LEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES-IDDHSAAVTAVKFTCNGRKILSCSA 540
+ + + S Y+ ASG + ++D + ++++ I S V + + ++I +
Sbjct: 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE 123
Query: 541 DRSLVVRDVVETNSAYKISRRHQQLASQGTVYD-MDIDPTMEVVITVGQDKKINSFSIAA 599
R + + + L Q + +D P+ I G D N+ +I
Sbjct: 124 GRERFGHVFL-----FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD--NTVAIFE 176
Query: 600 GKLIRSFKQAKDFGDPMK----VTVDPSGSYLVCSYSNKSICLYDFISGEMVA------- 648
G FK FG+ K V +P GS + + +I LY+ + G
Sbjct: 177 GP---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233
Query: 649 KAMGHGEVITGVTFLPDCKHIVSVGGD 675
K + H + G+T+ PD I S D
Sbjct: 234 KNVAHSGSVFGLTWSPDGTKIASASAD 260
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 491 FLASGGRDRTIHLYDVK-RNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLV 545
F+A GG+D +H+Y + + +++I H A +T+V F+ NG +++ R ++
Sbjct: 462 FVAVGGQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVI 516
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 49 CVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKG--HLYGVECIAFSPDGEHLV 104
CVA+S D ++VA G G V V+ + A +SE+K H + +AFS +G LV
Sbjct: 453 CVALSNDKQFVAVG--GQDSKVHVYKLSG-ASVSEVKTIVHPAEITSVAFSNNGAFLV 507
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE 551
+ SG RD T+ ++D++ + + H AAV V++ +GR+++S + D + V D E
Sbjct: 212 VVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD-PE 267
Query: 552 TNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKD 611
T + + H VY + D V++ D I + + G I + +
Sbjct: 268 TETCLHTLQGHTN-----RVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 612 FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVS 671
M++ + LV ++ ++ ++D +G+ + G + + VT L K+ V
Sbjct: 321 LTSGMEL----KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 376
Query: 672 VGGD 675
D
Sbjct: 377 TSSD 380
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 357 IWDIKNLGC------ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400
IWDIK C N H +V+C+ + T S DGT++LWDL
Sbjct: 343 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI---TSSDDGTVKLWDL 389
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 15/175 (8%)
Query: 483 EEVTDSHYFLASGGRDRTIHLYDVKRNFDLI----ESIDDHSAAVTAVKF-TCNGRKILS 537
+ V D L +G D+T L+DV + E H+A V ++ + N +S
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223
Query: 538 CSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSI 597
S D ++ + D+ T+ A + H+ G + + P + T D F +
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHE-----GDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Query: 598 AAGKLIRSFKQAKDFGD---PM--KVTVDPSGSYLVCSYSNKSICLYDFISGEMV 647
G ++ + + D D P+ V SG L YSN ++D + EMV
Sbjct: 279 RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 313 AIACQFSTSE--KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHD 370
A +CQ+ + +L+ GD + +WD V R + S + H
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWD---VTTGQRISIFGSEFP-----------SGHT 205
Query: 371 PSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHE 414
V ++ F + S D T+RLWDL + S + GHE
Sbjct: 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 491 FLASGGRDRTIHLY------DVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544
LA+G D T+ ++ D DL+ I+ H V V ++ +G + +CS D+S+
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 545 VVRDVVETNSAYK---ISRRHQQ 564
+ + E+ Y+ + + H Q
Sbjct: 132 WIWETDESGEEYECISVLQEHSQ 154
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 21/202 (10%)
Query: 486 TDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF--TCNGRKILSCSADRS 543
+D ASG D T L+DV+ L++S H A V + + G +S D+
Sbjct: 165 SDMQILTASG--DGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDID-----PTMEVVITVGQDKKINSFSIA 598
+V D+ R Q ++ D++ P+ + + D + +
Sbjct: 222 AMVWDM-----------RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Query: 599 AGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVIT 658
A + + + + V SG L Y++ +I ++D + G V+ GH ++
Sbjct: 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330
Query: 659 GVTFLPDCKHIVSVGGDGLQRV 680
+ PD S D RV
Sbjct: 331 TLRVSPDGTAFCSGSWDHTLRV 352
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 70 VLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG 107
+ VWD N + + +GH G CI S DG L T G
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 113/297 (38%), Gaps = 71/297 (23%)
Query: 386 FSTCSADGTIRLWDL-ALQSELSKDVLGHE----SLNIEPMSTAHLVSAGIFERNTMETS 440
F++ S D T+++WD LQ+ DV E S ++ P+ST H + A
Sbjct: 115 FTSSSFDKTLKVWDTNTLQT---ADVFNFEETVYSHHMSPVSTKHCLVA----------- 160
Query: 441 VSTQGYRSMA--VSSRGSTLLLDAHDAEIXXXXXXXXXKKDDVLEEVTDSHYFLASGGRD 498
V T+G + + S + +L H EI Y LA+ D
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD------------YILATASAD 208
Query: 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKI 558
+ L+DV+R + ++D H NG+K + V N+A+
Sbjct: 209 SRVKLWDVRRASGCLITLDQH-----------NGKK-----------SQAVESANTAH-- 244
Query: 559 SRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK--LIRSFKQAKDFGDPM 616
G V + ++TVG D ++ ++ + G+ L+ K + +
Sbjct: 245 ---------NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL 295
Query: 617 KVTVDP--SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVS 671
K TV S ++ Y + +I +Y SGE + GH + + F + + + S
Sbjct: 296 KFTVSCGCSSEFVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVA--AGESGPQPAVLVWDCANLAFI 81
L V D D Q V HR P+PL A S DG +A ESG + A+++ AN A +
Sbjct: 155 LRVSDYDGYNQ---FVVHRSPQPLXSPAWSPDGSKLAYVTFESG-RSALVIQTLANGA-V 209
Query: 82 SELKGHLYGVECIAFSPDGEHL 103
++ AFSPDG L
Sbjct: 210 RQVASFPRHNGAPAFSPDGSKL 231
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 57 RYVAAGESGPQPAVLVWDC--ANLAFISELKGHLYGVECIAFSPDGEHLVTVGGY---IY 111
R A S P++L+WD AN + +GH G+ + + EHL+ G +
Sbjct: 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288
Query: 112 LWNWRSAMLVMKLKA 126
LWN SA + + A
Sbjct: 289 LWNPESAEQLSQFPA 303
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVA--AGESGPQPAVLVWDCANLAFI 81
L V D D Q V HR P+PL A S DG +A ESG + A+++ AN A +
Sbjct: 161 LRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESG-RSALVIQTLANGA-V 215
Query: 82 SELKGHLYGVECIAFSPDGEHL 103
++ AFSPDG L
Sbjct: 216 RQVASFPRHNGAPAFSPDGSKL 237
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVA--AGESGPQPAVLVWDCANLAFI 81
L V D D Q V HR P+PL A S DG +A ESG + A+++ AN A +
Sbjct: 161 LRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESG-RSALVIQTLANGA-V 215
Query: 82 SELKGHLYGVECIAFSPDGEHL 103
++ AFSPDG L
Sbjct: 216 RQVASFPRHNGAPAFSPDGSKL 237
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVA--AGESGPQPAVLVWDCANLAFI 81
L V D D Q V HR P+PL A S DG +A ESG + A+++ AN A +
Sbjct: 161 LRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESG-RSALVIQTLANGA-V 215
Query: 82 SELKGHLYGVECIAFSPDGEHL 103
++ AFSPDG L
Sbjct: 216 RQVASFPRHNGAPAFSPDGSKL 237
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVA--AGESGPQPAVLVWDCANLAFI 81
L V D D Q V HR P+PL A S DG +A ESG + A+++ AN A +
Sbjct: 182 LRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESG-RSALVIQTLANGA-V 236
Query: 82 SELKGHLYGVECIAFSPDGEHL 103
++ AFSPDG L
Sbjct: 237 RQVASFPRHNGAPAFSPDGSKL 258
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 24 LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVA--AGESGPQPAVLVWDCANLAFI 81
L V D D Q V HR P+PL A S DG +A ESG + A+++ AN A +
Sbjct: 183 LRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESG-RSALVIQTLANGA-V 237
Query: 82 SELKGHLYGVECIAFSPDGEHL 103
++ AFSPDG L
Sbjct: 238 RQVASFPRHNGAPAFSPDGSKL 259
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 487 DSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF-TCNGRKILSCSADRSLV 545
+ + +A+GG+D + ++DV++ + + H A + V F N + +CS D SL
Sbjct: 247 NQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW 306
Query: 546 VRDVVETNSAYKISRRHQ 563
D T+ K S HQ
Sbjct: 307 HWD-ASTDVPEKSSLFHQ 323
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%)
Query: 49 CVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG- 107
CV S + G V VW+ AN + GH + + SPDG + G
Sbjct: 153 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 212
Query: 108 -GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
G LW+ + L +A+ CFS + ++ A +K W +
Sbjct: 213 DGQAMLWDLNEGKHLYTLDGGDIINAL---CFSPNRYWLCAATGPSIKIWDL 261
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 83/191 (43%), Gaps = 11/191 (5%)
Query: 491 FLASGGRDRTIHLYDVKR---NFDLIE-SIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
+ S RD+TI ++ + R N+ + + ++ HS V+ V + +G+ LS S D +L +
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSF-SIAAGKLIRS 605
D+ + + + + S D +++ +DK I + ++ K
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSDN------RQIVSGSRDKTIKLWNTLGVCKYTVQ 143
Query: 606 FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD 665
+ ++ ++ + + S +V +K + +++ + ++ +GH + VT PD
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 203
Query: 666 CKHIVSVGGDG 676
S G DG
Sbjct: 204 GSLCASGGKDG 214
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 65 GPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVM 122
G V VW+ AN + GH + + SPDG + G G LW+ +
Sbjct: 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 251
Query: 123 KLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTI 158
L +A+ CFS + ++ A +K W +
Sbjct: 252 TLDGGDIINAL---CFSPNRYWLCAATGPSIKIWDL 284
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 83/191 (43%), Gaps = 11/191 (5%)
Query: 491 FLASGGRDRTIHLYDVKR---NFDLIE-SIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546
+ S RD+TI ++ + R N+ + + ++ HS V+ V + +G+ LS S D +L +
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSF-SIAAGKLIRS 605
D+ + + + + S D +++ +DK I + ++ K
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN------RQIVSGSRDKTIKLWNTLGVCKYTVQ 166
Query: 606 FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD 665
+ ++ ++ + + S +V +K + +++ + ++ +GH + VT PD
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 226
Query: 666 CKHIVSVGGDG 676
S G DG
Sbjct: 227 GSLCASGGKDG 237
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 542 RSLVVRD----VVETNSAYKISRRHQQLASQGT-VYDMDIDP-TMEVVITVGQDKKINSF 595
RS+ V D V +K S + QG+ V D++ P + E VITVG D+KI+ F
Sbjct: 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234
Query: 596 SIAAGKLIR 604
+G+ ++
Sbjct: 235 DGKSGEFLK 243
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 26/149 (17%)
Query: 308 PTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACI--WDIKNLGC 365
P A + S+K V D ++ VWD V+ S C+ W L
Sbjct: 251 PVQGGIFALSWLDSQKFATVGADATIRVWD-------------VTTSKCVQKW---TLDK 294
Query: 366 ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH 425
+ + + V VA TG + S DGT+ ++L E+ K + GH I ++
Sbjct: 295 QQLGNQQVGVVA---TGNGRIISLSLDGTLNFYELG-HDEVLKTISGHNK-GITALTVNP 349
Query: 426 LVSAGIFERNTMETSVST--QGYRSMAVS 452
L+S G ++ ME S S+ Q + ++ VS
Sbjct: 350 LIS-GSYDGRIMEWSSSSMHQDHSNLIVS 377
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 357 IWDIKN---LGCENMHDPSVSCVARGCTGGVS-FSTCSADGTIRLWD 399
+WD+ L N H V+CVA C G + F +C DG I LWD
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTIFLSCGEDGRILLWD 210
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 491 FLASGGRDRTIHLYDV----------------------KRNFDLIESIDDHSAAVTAVKF 528
++ +G RD T+H++ + + N + + H A+V V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV-- 276
Query: 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ 588
+ +G ++S S D +L+V DV + Y +S ++ S T+YD + + I+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS--TIYDHE----RKRCISASM 330
Query: 589 DKKINSFSIAAGKLIRSFK 607
D I + + G+L+ + +
Sbjct: 331 DTTIRIWDLENGELMYTLQ 349
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
+P+ C A ++D +A + + + + ELK H V I ++PD +V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 105 TVGG--YIYLW-----NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKK 151
T G Y+W W+ ++++++ + C ++ KF V +G +
Sbjct: 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA----PNEKKFAVGSGSR 118
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 556 YKISRRHQQLASQGT-VYDMDIDP-TMEVVITVGQDKKINSFSIAAGKLIR 604
+K S + QG+ V D++ P + E VITVG D+KI+ F +G+ ++
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 26/120 (21%)
Query: 308 PTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACI--WDIKNLGC 365
P A + S+K V D ++ VWD V+ S C+ W L
Sbjct: 251 PVQGGIFALSWLDSQKFATVGADATIRVWD-------------VTTSKCVQKW---TLDK 294
Query: 366 ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHE----SLNIEPM 421
+ + + V VA TG + S DGT+ ++L E+ K + GH +L + P+
Sbjct: 295 QQLGNQQVGVVA---TGNGRIISLSLDGTLNFYELG-HDEVLKTISGHNKGITALTVNPL 350
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 386 FSTCSADGTIRLWDLALQS-----ELSKDVLGHESLNIEPMSTAHLVS 428
F+T AD TIR+WD+ L K LG++ + + ++S
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 488 SHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVR 547
+ + L+SG R IH +DV+ I ++ HS+ V + + +G ++ S D + +
Sbjct: 185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
Query: 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG---QDKKINSFSIAAGKLIR 604
D +S K ++ + A + + P ++ G DK+I+ ++ A G +
Sbjct: 245 DA--RSSIPKFTKTNHNAAVKAVAW----CPWQSNLLATGGGTMDKQIHFWNAATGARVN 298
Query: 605 S 605
+
Sbjct: 299 T 299
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLV 104
+P+ C A ++D +A + + + + ELK H V + ++PD +V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 105 TVGG--YIYLW-----NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKK 151
T G Y+W W+ ++++++ + C ++ KF V +G +
Sbjct: 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA----PNEKKFAVGSGSR 118
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
Query: 491 FLASGGRDRTIHLYDV----------------------KRNFDLIESIDDHSAAVTAVKF 528
++ +G RD T+H++ + + N + + H A+V V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV-- 276
Query: 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ 588
+ +G ++S S D +L+V DV + Y +S ++ S T+YD + + I+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS--TIYDHE----RKRCISASX 330
Query: 589 DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640
D I + + G+L + + +++ S +LV + ++ SI +D
Sbjct: 331 DTTIRIWDLENGELXYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWD 378
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEA------------------TRCCV--LVSHSA 355
C+F ++V GD + +WDI + TR V SA
Sbjct: 160 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 356 CIWDIKNLGCENMHDPSVSCVARGC--TGGVSFSTCSADGTIRLWDLALQSEL 406
+WD++ C S + C G +F+T S D T RL+DL EL
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 272
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEA------------------TRCCV--LVSHSA 355
C+F ++V GD + +WDI + TR V SA
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 356 CIWDIKNLGCENMHDPSVSCVARGC--TGGVSFSTCSADGTIRLWDLALQSEL 406
+WD++ C S + C G +F+T S D T RL+DL EL
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEA------------------TRCCV--LVSHSA 355
C+F ++V GD + +WDI + TR V SA
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 356 CIWDIKNLGCENMHDPSVSCVARGC--TGGVSFSTCSADGTIRLWDLALQSEL 406
+WD++ C S + C G +F+T S D T RL+DL EL
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEA------------------TRCCV--LVSHSA 355
C+F ++V GD + +WDI + TR V SA
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 356 CIWDIKNLGCENMHDPSVSCVARGC--TGGVSFSTCSADGTIRLWDLALQSEL 406
+WD++ C S + C G +F+T S D T RL+DL EL
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEA------------------TRCCV--LVSHSA 355
C+F ++V GD + +WDI + TR V SA
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 356 CIWDIKNLGCENMHDPSVSCVARGC--TGGVSFSTCSADGTIRLWDLALQSEL 406
+WD++ C S + C G +F+T S D T RL+DL EL
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,069,491
Number of Sequences: 62578
Number of extensions: 994157
Number of successful extensions: 2779
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2186
Number of HSP's gapped (non-prelim): 432
length of query: 882
length of database: 14,973,337
effective HSP length: 107
effective length of query: 775
effective length of database: 8,277,491
effective search space: 6415055525
effective search space used: 6415055525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)