Query 047837
Match_columns 882
No_of_seqs 824 out of 4079
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 03:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1408 WD40 repeat protein [F 100.0 9.1E-77 2E-81 599.2 50.0 801 4-865 41-886 (1080)
2 KOG0319 WD40-repeat-containing 100.0 3.5E-53 7.6E-58 432.6 49.0 535 5-708 24-602 (775)
3 KOG0319 WD40-repeat-containing 100.0 6.2E-53 1.4E-57 430.8 41.3 509 3-685 65-620 (775)
4 KOG0291 WD40-repeat-containing 100.0 1E-49 2.3E-54 407.2 59.0 544 4-719 18-606 (893)
5 KOG0318 WD40 repeat stress pro 100.0 6.1E-50 1.3E-54 392.8 54.7 510 8-704 26-582 (603)
6 KOG0271 Notchless-like WD40 re 100.0 3.5E-52 7.5E-57 392.2 23.7 368 34-682 107-479 (480)
7 KOG0306 WD40-repeat-containing 100.0 2.1E-48 4.5E-53 397.5 48.6 541 14-715 34-654 (888)
8 KOG0291 WD40-repeat-containing 100.0 1.9E-45 4.1E-50 376.1 54.0 525 4-693 59-621 (893)
9 KOG0306 WD40-repeat-containing 100.0 4.9E-46 1.1E-50 380.2 45.1 523 6-687 71-667 (888)
10 KOG0318 WD40 repeat stress pro 100.0 5.9E-44 1.3E-48 350.8 51.4 520 6-684 65-602 (603)
11 KOG0271 Notchless-like WD40 re 100.0 7.5E-47 1.6E-51 356.3 23.8 350 6-640 121-479 (480)
12 KOG2106 Uncharacterized conser 100.0 1.6E-41 3.5E-46 331.5 44.4 502 5-683 70-625 (626)
13 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-42 7.1E-47 329.9 21.5 241 369-682 216-458 (459)
14 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-39 5.8E-44 309.9 23.0 277 367-715 172-450 (459)
15 KOG0315 G-protein beta subunit 100.0 1.4E-37 3E-42 277.2 30.2 298 254-663 11-309 (311)
16 KOG1539 WD repeat protein [Gen 100.0 1.1E-35 2.3E-40 308.6 47.0 532 15-686 49-650 (910)
17 KOG0286 G-protein beta subunit 100.0 3.3E-36 7.2E-41 275.0 32.0 290 235-640 49-343 (343)
18 KOG1063 RNA polymerase II elon 100.0 2.4E-35 5.1E-40 299.9 41.5 551 3-706 17-675 (764)
19 KOG0286 G-protein beta subunit 100.0 1.4E-35 3.1E-40 270.8 32.2 291 306-682 51-343 (343)
20 KOG0273 Beta-transducin family 100.0 1.1E-35 2.4E-40 289.0 33.0 334 240-684 177-523 (524)
21 KOG0279 G protein beta subunit 100.0 1.9E-35 4.1E-40 268.5 31.4 284 308-684 13-313 (315)
22 KOG1408 WD40 repeat protein [F 100.0 1.8E-34 4E-39 293.2 41.9 576 48-724 41-712 (1080)
23 KOG0296 Angio-associated migra 100.0 4.3E-35 9.4E-40 276.0 32.3 336 35-550 57-398 (399)
24 KOG0315 G-protein beta subunit 100.0 9.4E-35 2E-39 259.1 30.7 293 100-621 10-309 (311)
25 KOG1539 WD repeat protein [Gen 100.0 1.4E-33 3E-38 293.0 43.1 470 7-643 165-649 (910)
26 KOG0279 G protein beta subunit 100.0 1.6E-34 3.4E-39 262.5 30.1 283 367-718 12-306 (315)
27 KOG0273 Beta-transducin family 100.0 1.4E-34 3.1E-39 281.3 30.3 331 305-717 173-515 (524)
28 KOG0292 Vesicle coat complex C 100.0 1.9E-32 4.1E-37 285.4 45.2 481 4-669 13-504 (1202)
29 KOG0276 Vesicle coat complex C 100.0 4.9E-32 1.1E-36 272.1 44.5 461 5-683 18-489 (794)
30 KOG0263 Transcription initiati 100.0 6.3E-35 1.4E-39 303.0 23.1 277 370-689 378-654 (707)
31 KOG0296 Angio-associated migra 100.0 2.3E-33 5E-38 264.4 30.3 330 239-684 62-398 (399)
32 KOG2106 Uncharacterized conser 100.0 4E-31 8.7E-36 259.1 46.1 507 49-714 70-615 (626)
33 KOG2048 WD40 repeat protein [G 100.0 1.8E-30 3.9E-35 264.4 52.5 496 44-684 25-548 (691)
34 KOG0295 WD40 repeat-containing 100.0 9.6E-34 2.1E-38 266.7 26.0 285 307-683 105-405 (406)
35 KOG0263 Transcription initiati 100.0 4.3E-33 9.2E-38 289.5 26.6 271 243-643 380-650 (707)
36 KOG0284 Polyadenylation factor 100.0 6.6E-34 1.4E-38 271.6 18.0 284 309-685 95-381 (464)
37 KOG0265 U5 snRNP-specific prot 100.0 9.7E-32 2.1E-36 246.9 28.4 289 305-683 42-337 (338)
38 KOG0645 WD40 repeat protein [G 100.0 3.3E-31 7E-36 239.9 31.2 289 34-550 6-311 (312)
39 KOG1063 RNA polymerase II elon 100.0 2E-30 4.3E-35 264.3 40.4 576 6-684 60-763 (764)
40 KOG0276 Vesicle coat complex C 100.0 1.8E-30 4E-35 260.9 39.1 429 38-711 9-477 (794)
41 KOG0295 WD40 repeat-containing 100.0 2.1E-32 4.6E-37 257.7 22.8 256 368-696 106-376 (406)
42 KOG0285 Pleiotropic regulator 100.0 8.1E-32 1.7E-36 252.7 26.0 286 238-686 148-441 (460)
43 KOG0292 Vesicle coat complex C 100.0 4.2E-30 9E-35 268.1 39.3 369 45-631 10-385 (1202)
44 KOG0293 WD40 repeat-containing 100.0 6.6E-32 1.4E-36 258.0 23.7 288 36-551 218-514 (519)
45 KOG0281 Beta-TrCP (transducin 100.0 8.5E-33 1.8E-37 258.0 15.4 275 310-689 197-482 (499)
46 KOG0285 Pleiotropic regulator 100.0 2.9E-31 6.4E-36 248.9 24.5 287 34-550 143-439 (460)
47 KOG0293 WD40 repeat-containing 100.0 2.7E-31 5.9E-36 253.8 23.9 293 305-686 219-515 (519)
48 KOG0284 Polyadenylation factor 100.0 5E-32 1.1E-36 258.8 17.9 282 45-551 97-381 (464)
49 KOG0645 WD40 repeat protein [G 100.0 7.1E-30 1.5E-34 231.3 30.8 288 308-684 12-311 (312)
50 KOG2048 WD40 repeat protein [G 100.0 3.8E-27 8.3E-32 240.3 53.6 546 4-691 29-608 (691)
51 KOG0316 Conserved WD40 repeat- 100.0 2E-30 4.4E-35 229.5 25.3 281 307-682 14-297 (307)
52 KOG0282 mRNA splicing factor [ 100.0 1.5E-31 3.3E-36 261.5 19.1 292 33-505 205-503 (503)
53 KOG0265 U5 snRNP-specific prot 100.0 3.5E-30 7.7E-35 236.7 26.9 292 122-640 41-336 (338)
54 KOG0266 WD40 repeat-containing 100.0 4E-30 8.6E-35 278.4 31.6 288 310-684 159-454 (456)
55 KOG0282 mRNA splicing factor [ 100.0 2.8E-31 6.1E-36 259.7 18.4 288 306-682 210-503 (503)
56 cd00200 WD40 WD40 domain, foun 100.0 7.2E-29 1.6E-33 258.0 37.7 282 308-682 7-289 (289)
57 PLN00181 protein SPA1-RELATED; 100.0 5.8E-29 1.3E-33 291.3 40.1 290 308-683 481-792 (793)
58 KOG0281 Beta-TrCP (transducin 100.0 3.2E-31 6.9E-36 247.5 15.9 239 369-690 196-434 (499)
59 cd00200 WD40 WD40 domain, foun 100.0 8E-29 1.7E-33 257.7 35.1 284 36-548 3-289 (289)
60 KOG0278 Serine/threonine kinas 100.0 1.8E-30 4E-35 231.7 18.4 283 311-689 15-302 (334)
61 KOG0275 Conserved WD40 repeat- 100.0 1.7E-30 3.7E-35 240.3 18.2 292 242-682 214-507 (508)
62 KOG0313 Microtubule binding pr 100.0 3.9E-29 8.4E-34 237.1 27.1 275 321-684 115-418 (423)
63 KOG0316 Conserved WD40 repeat- 100.0 2.9E-29 6.2E-34 222.2 24.0 274 369-719 16-294 (307)
64 KOG0266 WD40 repeat-containing 100.0 8.2E-29 1.8E-33 268.2 32.3 272 369-711 158-438 (456)
65 PLN00181 protein SPA1-RELATED; 100.0 8.7E-28 1.9E-32 281.4 38.4 207 369-641 574-792 (793)
66 KOG0277 Peroxisomal targeting 100.0 1.8E-28 4E-33 219.8 21.2 282 314-683 12-308 (311)
67 KOG0643 Translation initiation 100.0 8.4E-28 1.8E-32 217.2 23.4 284 308-684 8-317 (327)
68 KOG0275 Conserved WD40 repeat- 100.0 2.5E-28 5.4E-33 226.0 18.0 282 45-548 214-507 (508)
69 KOG0283 WD40 repeat-containing 100.0 7.7E-28 1.7E-32 253.0 24.0 296 368-688 265-580 (712)
70 KOG0772 Uncharacterized conser 100.0 1.2E-27 2.7E-32 235.4 23.7 323 226-641 152-486 (641)
71 KOG0641 WD40 repeat protein [G 100.0 7E-26 1.5E-30 199.2 31.9 258 367-684 86-349 (350)
72 KOG0305 Anaphase promoting com 100.0 4.7E-27 1E-31 241.2 28.4 275 316-686 183-463 (484)
73 KOG1407 WD40 repeat protein [F 100.0 4.4E-27 9.6E-32 211.9 24.7 274 367-713 17-290 (313)
74 KOG1407 WD40 repeat protein [F 100.0 1.9E-26 4.1E-31 207.9 28.5 275 240-675 19-293 (313)
75 KOG0278 Serine/threonine kinas 100.0 4.3E-28 9.2E-33 216.7 17.7 203 369-646 99-301 (334)
76 KOG1445 Tumor-specific antigen 100.0 5.9E-26 1.3E-30 228.5 34.2 189 495-685 599-799 (1012)
77 PTZ00421 coronin; Provisional 100.0 1.4E-25 3E-30 241.1 38.5 292 459-786 70-381 (493)
78 KOG0277 Peroxisomal targeting 100.0 3.5E-27 7.5E-32 211.7 21.7 282 92-597 12-308 (311)
79 KOG0640 mRNA cleavage stimulat 100.0 3.4E-27 7.4E-32 217.5 22.0 308 306-683 108-425 (430)
80 KOG0772 Uncharacterized conser 100.0 6E-27 1.3E-31 230.6 24.4 302 308-682 165-485 (641)
81 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-25 3.7E-30 208.6 32.5 206 459-684 95-303 (311)
82 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.6E-31 247.8 29.4 280 311-692 209-490 (537)
83 PTZ00420 coronin; Provisional 100.0 1.4E-25 3.1E-30 241.3 36.0 291 459-785 69-383 (568)
84 KOG0643 Translation initiation 100.0 3.1E-26 6.7E-31 207.1 25.0 282 458-765 4-312 (327)
85 KOG0313 Microtubule binding pr 100.0 4.3E-26 9.4E-31 216.5 27.0 309 87-550 104-418 (423)
86 KOG0288 WD40 repeat protein Ti 100.0 2.4E-27 5.2E-32 227.4 18.1 285 304-681 169-458 (459)
87 KOG0973 Histone transcription 100.0 3.5E-26 7.5E-31 246.9 28.0 270 367-686 66-357 (942)
88 KOG1446 Histone H3 (Lys4) meth 100.0 6.4E-25 1.4E-29 204.8 32.5 266 369-708 13-288 (311)
89 KOG0288 WD40 repeat protein Ti 100.0 4.1E-27 8.9E-32 225.8 18.2 284 240-639 174-458 (459)
90 KOG0640 mRNA cleavage stimulat 99.9 9.8E-27 2.1E-31 214.5 19.7 257 456-729 104-386 (430)
91 KOG0294 WD40 repeat-containing 99.9 1.5E-25 3.2E-30 207.8 27.1 279 323-686 3-283 (362)
92 PTZ00421 coronin; Provisional 99.9 6E-25 1.3E-29 236.1 34.9 253 367-684 72-331 (493)
93 KOG0310 Conserved WD40 repeat- 99.9 6.7E-26 1.4E-30 222.7 22.7 274 370-719 26-303 (487)
94 KOG0310 Conserved WD40 repeat- 99.9 2.4E-25 5.2E-30 218.9 26.4 284 308-685 24-310 (487)
95 KOG0283 WD40 repeat-containing 99.9 1E-25 2.2E-30 237.2 24.2 210 367-644 366-578 (712)
96 KOG2096 WD40 repeat protein [G 99.9 5.7E-25 1.2E-29 203.8 25.3 286 366-682 82-400 (420)
97 KOG0305 Anaphase promoting com 99.9 6E-25 1.3E-29 225.8 26.9 239 244-644 220-463 (484)
98 KOG0289 mRNA splicing factor [ 99.9 1.5E-24 3.3E-29 209.4 27.7 283 310-683 219-505 (506)
99 KOG0294 WD40 repeat-containing 99.9 8.1E-25 1.8E-29 202.9 24.6 243 35-403 36-283 (362)
100 KOG0647 mRNA export protein (c 99.9 1.6E-24 3.4E-29 199.9 25.8 277 308-673 25-312 (347)
101 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.3E-30 228.3 19.8 267 376-702 30-304 (735)
102 KOG2096 WD40 repeat protein [G 99.9 8.6E-25 1.9E-29 202.6 23.4 327 69-548 62-400 (420)
103 KOG0274 Cdc4 and related F-box 99.9 1.9E-24 4.1E-29 232.1 29.8 283 243-654 210-494 (537)
104 KOG0300 WD40 repeat-containing 99.9 7.9E-25 1.7E-29 202.4 22.2 333 78-644 138-478 (481)
105 KOG1036 Mitotic spindle checkp 99.9 7.9E-24 1.7E-28 196.3 27.0 231 369-674 53-294 (323)
106 KOG0308 Conserved WD40 repeat- 99.9 5.2E-25 1.1E-29 223.3 20.9 355 54-650 35-401 (735)
107 KOG0299 U3 snoRNP-associated p 99.9 4.3E-24 9.4E-29 208.3 26.4 287 81-539 135-444 (479)
108 KOG0268 Sof1-like rRNA process 99.9 2.1E-25 4.5E-30 210.4 16.4 283 306-688 62-349 (433)
109 KOG1445 Tumor-specific antigen 99.9 1.4E-23 3.1E-28 211.6 30.4 214 370-645 627-847 (1012)
110 KOG1963 WD40 repeat protein [G 99.9 2E-21 4.4E-26 205.5 46.0 472 46-685 18-539 (792)
111 PTZ00420 coronin; Provisional 99.9 7.2E-23 1.6E-27 220.5 35.7 236 367-666 71-318 (568)
112 KOG0299 U3 snoRNP-associated p 99.9 7.8E-24 1.7E-28 206.6 25.2 292 367-716 139-446 (479)
113 KOG0301 Phospholipase A2-activ 99.9 8.2E-24 1.8E-28 216.5 26.3 280 305-684 9-288 (745)
114 KOG0300 WD40 repeat-containing 99.9 3.1E-24 6.7E-29 198.6 20.9 329 34-600 140-478 (481)
115 KOG0289 mRNA splicing factor [ 99.9 4.4E-24 9.6E-29 206.2 22.4 229 465-713 220-450 (506)
116 KOG0973 Histone transcription 99.9 6.8E-24 1.5E-28 229.3 26.2 304 370-732 13-364 (942)
117 KOG0639 Transducin-like enhanc 99.9 3E-24 6.5E-29 210.7 21.1 287 308-683 417-703 (705)
118 KOG4283 Transcription-coupled 99.9 1.8E-23 3.8E-28 191.8 24.3 308 308-683 41-364 (397)
119 KOG0647 mRNA export protein (c 99.9 2E-23 4.4E-28 192.6 24.6 268 369-710 26-308 (347)
120 KOG0268 Sof1-like rRNA process 99.9 9.3E-25 2E-29 206.1 15.5 284 356-719 52-347 (433)
121 KOG0641 WD40 repeat protein [G 99.9 4E-22 8.8E-27 175.7 30.8 310 131-598 33-349 (350)
122 KOG0646 WD40 repeat protein [G 99.9 1.4E-23 3E-28 205.3 23.7 291 108-665 18-330 (476)
123 KOG0264 Nucleosome remodeling 99.9 2.5E-23 5.4E-28 203.4 24.2 260 369-687 123-407 (422)
124 KOG1036 Mitotic spindle checkp 99.9 1.1E-22 2.3E-27 188.8 25.4 269 369-715 12-294 (323)
125 KOG0639 Transducin-like enhanc 99.9 1.5E-23 3.2E-28 205.9 19.9 281 87-597 418-703 (705)
126 KOG1538 Uncharacterized conser 99.9 1.9E-22 4E-27 204.7 27.6 271 3-402 15-294 (1081)
127 KOG1963 WD40 repeat protein [G 99.9 7.5E-21 1.6E-25 201.2 40.7 514 5-690 21-589 (792)
128 KOG0646 WD40 repeat protein [G 99.9 8.8E-23 1.9E-27 199.7 24.3 297 388-711 12-335 (476)
129 KOG0650 WD40 repeat nucleolar 99.9 8.7E-23 1.9E-27 205.1 24.0 317 234-681 393-732 (733)
130 KOG0269 WD40 repeat-containing 99.9 2.3E-23 5E-28 215.8 20.4 301 314-693 43-349 (839)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-21 6.4E-26 202.1 36.8 256 373-704 33-299 (300)
132 KOG1538 Uncharacterized conser 99.9 5.8E-21 1.3E-25 194.0 35.2 278 46-550 14-293 (1081)
133 KOG2445 Nuclear pore complex c 99.9 9.4E-22 2E-26 182.1 26.9 256 367-684 10-318 (361)
134 KOG1332 Vesicle coat complex C 99.9 8.2E-23 1.8E-27 182.7 18.2 251 369-684 10-286 (299)
135 KOG1274 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 207.6 29.6 280 311-681 14-297 (933)
136 KOG1332 Vesicle coat complex C 99.9 1.6E-22 3.4E-27 180.9 19.3 240 323-642 25-286 (299)
137 KOG0301 Phospholipase A2-activ 99.9 2.8E-22 6E-27 205.4 23.2 269 367-717 11-288 (745)
138 KOG2055 WD40 repeat protein [G 99.9 9.5E-22 2.1E-26 191.9 24.8 289 308-684 211-512 (514)
139 KOG0267 Microtubule severing p 99.9 3.2E-23 6.9E-28 213.0 14.7 213 491-712 42-255 (825)
140 KOG0264 Nucleosome remodeling 99.9 9.4E-22 2E-26 192.5 24.1 259 307-642 121-404 (422)
141 KOG0267 Microtubule severing p 99.9 1.6E-23 3.5E-28 215.2 10.3 234 369-676 27-260 (825)
142 KOG2055 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 189.1 24.2 287 88-598 213-512 (514)
143 KOG1273 WD40 repeat protein [G 99.9 4.6E-21 1E-25 177.8 24.2 252 368-643 63-323 (405)
144 KOG1273 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 179.4 22.1 164 46-280 25-192 (405)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7E-20 1.5E-24 191.7 35.8 271 21-411 10-289 (300)
146 KOG1274 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 200.2 28.5 268 368-711 11-286 (933)
147 KOG0321 WD40 repeat-containing 99.9 3.7E-21 8.1E-26 195.2 22.9 301 314-689 53-396 (720)
148 KOG4378 Nuclear protein COP1 [ 99.9 2E-20 4.3E-25 183.9 25.4 294 256-666 5-305 (673)
149 KOG0650 WD40 repeat nucleolar 99.9 1.9E-20 4.1E-25 188.5 24.3 197 369-639 520-732 (733)
150 KOG4283 Transcription-coupled 99.9 5.1E-20 1.1E-24 169.3 24.8 308 237-642 39-365 (397)
151 KOG0269 WD40 repeat-containing 99.9 6.1E-21 1.3E-25 198.0 21.0 208 367-644 130-342 (839)
152 KOG4328 WD40 protein [Function 99.9 2.3E-20 5.1E-25 182.2 23.4 295 308-683 184-494 (498)
153 KOG1912 WD40 repeat protein [G 99.9 3.1E-19 6.8E-24 184.9 28.3 575 5-690 20-662 (1062)
154 KOG0302 Ribosome Assembly prot 99.9 3.3E-20 7.1E-25 176.6 18.8 212 462-687 149-381 (440)
155 KOG0321 WD40 repeat-containing 99.9 1E-18 2.2E-23 177.7 29.8 450 50-707 55-554 (720)
156 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-19 3.4E-24 177.6 23.2 293 15-532 5-305 (673)
157 KOG2445 Nuclear pore complex c 99.8 4.6E-19 1E-23 164.4 24.1 279 311-663 14-341 (361)
158 KOG0270 WD40 repeat-containing 99.8 5.4E-19 1.2E-23 172.3 24.6 209 460-689 239-454 (463)
159 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-16 4.9E-21 175.3 46.9 372 83-685 60-443 (466)
160 COG2319 FOG: WD40 repeat [Gene 99.8 8.1E-16 1.8E-20 170.8 51.2 369 37-643 60-443 (466)
161 KOG0303 Actin-binding protein 99.8 4E-19 8.8E-24 170.2 20.2 292 458-786 75-385 (472)
162 KOG0302 Ribosome Assembly prot 99.8 7.6E-19 1.6E-23 167.4 21.9 256 369-677 150-432 (440)
163 KOG4328 WD40 protein [Function 99.8 5.9E-19 1.3E-23 172.5 21.4 264 368-696 184-462 (498)
164 KOG0307 Vesicle coat complex C 99.8 7.1E-20 1.5E-24 199.3 14.6 255 370-687 64-330 (1049)
165 KOG2919 Guanine nucleotide-bin 99.8 7.4E-18 1.6E-22 157.4 25.3 293 373-714 52-359 (406)
166 KOG4497 Uncharacterized conser 99.8 1.3E-18 2.7E-23 162.7 20.0 399 49-677 13-425 (447)
167 KOG1009 Chromatin assembly com 99.8 4.8E-18 1E-22 163.8 23.6 313 311-686 14-374 (434)
168 KOG1034 Transcriptional repres 99.8 6.4E-18 1.4E-22 158.3 22.6 318 85-550 35-383 (385)
169 KOG1034 Transcriptional repres 99.8 5.3E-18 1.2E-22 158.8 21.9 297 242-642 39-383 (385)
170 KOG0642 Cell-cycle nuclear pro 99.8 7.4E-19 1.6E-23 176.6 16.6 264 365-690 289-567 (577)
171 KOG1007 WD repeat protein TSSC 99.8 7.3E-18 1.6E-22 154.9 21.5 283 324-686 29-363 (370)
172 KOG2919 Guanine nucleotide-bin 99.8 3.3E-17 7.2E-22 153.1 24.6 237 250-589 120-361 (406)
173 KOG0270 WD40 repeat-containing 99.8 4.5E-18 9.8E-23 165.9 19.6 258 322-648 192-455 (463)
174 KOG1188 WD40 repeat protein [G 99.8 1E-17 2.3E-22 157.9 19.5 280 322-685 41-347 (376)
175 KOG4497 Uncharacterized conser 99.8 1.3E-17 2.8E-22 156.1 19.5 136 7-150 15-153 (447)
176 KOG1009 Chromatin assembly com 99.8 6.6E-17 1.4E-21 156.1 24.2 156 45-274 14-198 (434)
177 KOG0322 G-protein beta subunit 99.8 8.6E-18 1.9E-22 152.6 17.0 298 304-641 8-322 (323)
178 COG4946 Uncharacterized protei 99.8 4.4E-14 9.6E-19 139.1 43.2 438 7-628 43-504 (668)
179 PRK11028 6-phosphogluconolacto 99.8 1.4E-15 3E-20 160.3 33.7 280 324-685 5-305 (330)
180 KOG0322 G-protein beta subunit 99.8 2.7E-17 5.9E-22 149.4 16.8 302 79-549 5-322 (323)
181 KOG0303 Actin-binding protein 99.7 1.7E-16 3.7E-21 152.4 20.9 237 367-666 78-321 (472)
182 KOG2110 Uncharacterized conser 99.7 4E-16 8.7E-21 149.1 22.8 151 12-162 96-251 (391)
183 KOG1007 WD repeat protein TSSC 99.7 5.2E-16 1.1E-20 142.8 22.6 300 65-508 37-362 (370)
184 KOG0290 Conserved WD40 repeat- 99.7 4.1E-16 9E-21 143.7 21.1 258 446-716 75-357 (364)
185 KOG0771 Prolactin regulatory e 99.7 8.7E-17 1.9E-21 156.7 15.8 199 468-685 148-355 (398)
186 KOG4227 WD40 repeat protein [G 99.7 7.7E-16 1.7E-20 147.3 21.8 321 38-507 52-387 (609)
187 KOG0307 Vesicle coat complex C 99.7 4.6E-17 1E-21 177.7 15.0 253 311-645 65-330 (1049)
188 PRK11028 6-phosphogluconolacto 99.7 1.3E-14 2.7E-19 152.9 32.9 271 21-401 11-304 (330)
189 KOG1517 Guanine nucleotide bin 99.7 1.9E-15 4.2E-20 162.6 25.5 192 491-687 1179-1384(1387)
190 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3E-20 145.7 21.7 251 369-684 104-387 (609)
191 KOG0644 Uncharacterized conser 99.7 7.9E-18 1.7E-22 176.1 7.0 279 356-714 176-457 (1113)
192 PF02239 Cytochrom_D1: Cytochr 99.7 6.8E-14 1.5E-18 146.0 35.8 135 21-160 15-159 (369)
193 KOG1587 Cytoplasmic dynein int 99.7 2.3E-15 5.1E-20 160.6 25.2 280 331-687 222-519 (555)
194 KOG0644 Uncharacterized conser 99.7 5.4E-17 1.2E-21 170.0 12.0 116 35-159 183-300 (1113)
195 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.6E-21 160.9 13.6 277 306-654 290-573 (577)
196 KOG1334 WD40 repeat protein [G 99.7 3E-16 6.5E-21 155.0 15.4 307 302-685 134-467 (559)
197 KOG1272 WD40-repeat-containing 99.7 6.3E-17 1.4E-21 158.6 9.9 284 491-804 143-428 (545)
198 KOG0649 WD40 repeat protein [G 99.7 6.9E-15 1.5E-19 132.1 20.5 206 491-704 24-255 (325)
199 KOG1517 Guanine nucleotide bin 99.7 1.1E-14 2.4E-19 156.8 25.7 200 322-601 1178-1384(1387)
200 KOG2110 Uncharacterized conser 99.7 5E-14 1.1E-18 135.0 27.2 187 491-687 58-251 (391)
201 KOG0649 WD40 repeat protein [G 99.7 2.5E-14 5.4E-19 128.6 23.1 245 373-689 13-279 (325)
202 KOG2315 Predicted translation 99.7 2.9E-13 6.4E-18 136.9 33.5 150 499-665 251-411 (566)
203 KOG1524 WD40 repeat-containing 99.7 6.1E-15 1.3E-19 147.2 20.5 265 314-680 18-282 (737)
204 KOG0290 Conserved WD40 repeat- 99.7 2.7E-14 5.8E-19 131.9 22.8 195 462-674 148-356 (364)
205 KOG1188 WD40 repeat protein [G 99.7 2.8E-15 6.1E-20 141.7 16.8 199 491-694 42-252 (376)
206 KOG2394 WD40 protein DMR-N9 [G 99.7 1.3E-14 2.8E-19 145.2 21.5 163 464-664 219-384 (636)
207 KOG1524 WD40 repeat-containing 99.6 6.3E-14 1.4E-18 140.1 25.4 139 15-161 78-218 (737)
208 KOG1310 WD40 repeat protein [G 99.6 1.8E-14 3.9E-19 144.3 21.4 122 34-161 42-180 (758)
209 KOG1587 Cytoplasmic dynein int 99.6 5.2E-14 1.1E-18 150.4 24.6 262 309-643 241-517 (555)
210 KOG0771 Prolactin regulatory e 99.6 5.4E-15 1.2E-19 144.3 15.5 201 374-643 148-355 (398)
211 KOG1523 Actin-related protein 99.6 3.5E-14 7.5E-19 133.3 19.3 240 370-676 10-270 (361)
212 PRK01742 tolB translocation pr 99.6 3.5E-14 7.6E-19 154.0 22.7 235 330-665 183-426 (429)
213 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-12 2.8E-17 136.4 32.8 328 257-693 10-356 (369)
214 KOG2111 Uncharacterized conser 99.6 3.4E-12 7.3E-17 120.2 30.0 161 463-643 93-257 (346)
215 KOG1912 WD40 repeat protein [G 99.6 3.9E-13 8.4E-18 140.4 26.0 490 37-690 8-557 (1062)
216 COG5354 Uncharacterized protei 99.6 6.1E-12 1.3E-16 125.9 33.0 136 16-158 6-159 (561)
217 PRK01742 tolB translocation pr 99.6 1.2E-13 2.6E-18 149.9 22.8 214 461-705 200-425 (429)
218 KOG1523 Actin-related protein 99.6 1.9E-13 4.1E-18 128.4 20.3 212 460-687 6-239 (361)
219 KOG2315 Predicted translation 99.6 5.1E-12 1.1E-16 128.1 31.3 134 542-689 251-395 (566)
220 KOG2394 WD40 protein DMR-N9 [G 99.6 2.8E-13 6E-18 135.9 21.7 103 512-622 282-384 (636)
221 KOG1334 WD40 repeat protein [G 99.6 3.1E-14 6.8E-19 140.9 14.4 307 239-646 140-470 (559)
222 KOG1354 Serine/threonine prote 99.6 3.5E-13 7.6E-18 127.6 20.5 359 243-681 27-431 (433)
223 KOG2314 Translation initiation 99.6 4.5E-12 9.8E-17 127.8 29.3 131 23-160 191-335 (698)
224 KOG1240 Protein kinase contain 99.6 8.3E-13 1.8E-17 145.2 25.9 276 27-406 1034-1339(1431)
225 KOG2139 WD40 repeat protein [G 99.6 2.7E-12 5.9E-17 122.6 25.4 297 245-642 102-431 (445)
226 KOG1310 WD40 repeat protein [G 99.6 6.6E-14 1.4E-18 140.4 14.7 224 459-695 45-314 (758)
227 KOG1240 Protein kinase contain 99.5 1E-12 2.2E-17 144.6 24.8 261 367-689 1045-1339(1431)
228 PF08662 eIF2A: Eukaryotic tra 99.5 4.8E-13 1E-17 126.4 19.9 153 524-687 9-182 (194)
229 PF08662 eIF2A: Eukaryotic tra 99.5 4E-13 8.8E-18 127.0 19.2 149 6-163 11-183 (194)
230 KOG0974 WD-repeat protein WDR6 99.5 9.7E-11 2.1E-15 127.7 38.1 183 13-272 100-289 (967)
231 PRK03629 tolB translocation pr 99.5 3.4E-12 7.3E-17 138.1 27.3 137 15-158 165-316 (429)
232 KOG2321 WD40 repeat protein [G 99.5 3.2E-12 6.9E-17 129.4 24.7 278 369-685 50-344 (703)
233 KOG3881 Uncharacterized conser 99.5 2E-12 4.3E-17 125.0 21.8 214 491-707 117-343 (412)
234 KOG2111 Uncharacterized conser 99.5 2.3E-11 5E-16 114.6 27.3 296 3-401 8-322 (346)
235 KOG2139 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 124.0 20.0 200 465-684 99-309 (445)
236 PRK03629 tolB translocation pr 99.5 1.1E-11 2.4E-16 134.1 28.9 215 463-704 197-426 (429)
237 KOG3881 Uncharacterized conser 99.5 4.2E-12 9.2E-17 122.8 21.2 166 491-665 163-342 (412)
238 COG5354 Uncharacterized protei 99.5 8.5E-11 1.8E-15 117.9 29.9 134 542-689 255-400 (561)
239 PRK05137 tolB translocation pr 99.5 1.2E-11 2.5E-16 135.0 26.6 133 23-162 183-325 (435)
240 PRK04922 tolB translocation pr 99.5 9.1E-12 2E-16 135.6 25.5 132 23-161 185-326 (433)
241 PF04762 IKI3: IKI3 family; I 99.5 1.4E-08 3.1E-13 118.2 51.9 516 46-716 23-600 (928)
242 KOG1272 WD40-repeat-containing 99.5 2.5E-13 5.4E-18 133.8 10.9 266 245-634 133-401 (545)
243 KOG0974 WD-repeat protein WDR6 99.5 1.5E-09 3.3E-14 118.7 40.6 261 14-403 18-290 (967)
244 COG4946 Uncharacterized protei 99.5 1.6E-09 3.5E-14 107.6 37.1 171 489-673 332-507 (668)
245 PRK02889 tolB translocation pr 99.5 2.9E-11 6.2E-16 131.1 26.9 212 447-684 177-403 (427)
246 PRK05137 tolB translocation pr 99.4 6E-11 1.3E-15 129.4 28.5 201 461-688 198-416 (435)
247 PRK04922 tolB translocation pr 99.4 2.5E-11 5.4E-16 132.2 25.5 198 462-686 201-413 (433)
248 PRK02889 tolB translocation pr 99.4 2.9E-11 6.3E-16 131.1 25.8 220 369-665 194-425 (427)
249 PF04762 IKI3: IKI3 family; I 99.4 4.8E-08 1E-12 113.8 52.2 506 5-684 80-639 (928)
250 PF10282 Lactonase: Lactonase, 99.4 2.3E-08 5E-13 105.2 41.5 193 491-684 100-322 (345)
251 KOG2314 Translation initiation 99.4 4.3E-10 9.3E-15 113.8 26.6 151 525-687 398-576 (698)
252 KOG2041 WD40 repeat protein [G 99.4 5.8E-10 1.3E-14 116.0 28.2 495 45-690 15-625 (1189)
253 KOG2321 WD40 repeat protein [G 99.4 1.8E-10 4E-15 116.9 23.7 167 371-599 176-344 (703)
254 PF10282 Lactonase: Lactonase, 99.4 2.4E-09 5.3E-14 112.6 33.4 276 22-401 13-322 (345)
255 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.9E-09 1.5E-13 105.6 34.3 279 22-409 27-338 (352)
256 KOG1409 Uncharacterized conser 99.3 1.1E-10 2.3E-15 111.2 19.4 331 242-643 25-395 (404)
257 COG2706 3-carboxymuconate cycl 99.3 1.6E-08 3.4E-13 98.3 34.1 141 21-163 15-179 (346)
258 KOG4547 WD40 repeat-containing 99.3 2.5E-10 5.4E-15 117.2 21.7 187 490-685 6-221 (541)
259 KOG1354 Serine/threonine prote 99.3 1.2E-10 2.6E-15 110.7 17.6 282 45-405 26-363 (433)
260 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.9E-08 4.1E-13 102.4 34.3 274 331-693 27-339 (352)
261 PRK01029 tolB translocation pr 99.3 1.9E-09 4E-14 116.2 26.7 209 462-690 182-409 (428)
262 TIGR03300 assembly_YfgL outer 99.2 1.1E-08 2.3E-13 110.2 31.0 303 252-681 64-376 (377)
263 COG2706 3-carboxymuconate cycl 99.2 1.4E-08 3E-13 98.7 27.7 158 3-161 42-223 (346)
264 KOG1409 Uncharacterized conser 99.2 5.4E-10 1.2E-14 106.5 17.7 317 460-817 20-349 (404)
265 TIGR02800 propeller_TolB tol-p 99.2 3.3E-09 7.2E-14 116.2 26.8 196 463-685 188-398 (417)
266 TIGR02800 propeller_TolB tol-p 99.2 3.4E-09 7.4E-14 116.1 26.1 202 499-714 170-383 (417)
267 PRK00178 tolB translocation pr 99.2 6.7E-09 1.4E-13 113.8 28.1 212 448-686 181-408 (430)
268 KOG0280 Uncharacterized conser 99.2 5.1E-09 1.1E-13 97.9 21.1 198 467-685 124-334 (339)
269 PRK04792 tolB translocation pr 99.2 7.2E-09 1.6E-13 112.7 25.9 201 459-686 212-427 (448)
270 PRK04792 tolB translocation pr 99.2 1.1E-08 2.4E-13 111.2 26.4 158 493-664 278-446 (448)
271 KOG1064 RAVE (regulator of V-A 99.2 1.6E-10 3.4E-15 132.1 12.1 204 455-694 2199-2408(2439)
272 PF07433 DUF1513: Protein of u 99.2 3.8E-08 8.2E-13 96.1 26.6 144 5-148 9-180 (305)
273 KOG4547 WD40 repeat-containing 99.1 1.3E-08 2.7E-13 104.9 22.4 143 490-643 71-221 (541)
274 TIGR03300 assembly_YfgL outer 99.1 8.2E-08 1.8E-12 103.3 30.4 308 56-547 65-376 (377)
275 PRK00178 tolB translocation pr 99.1 2.2E-08 4.7E-13 109.8 25.6 200 500-713 180-391 (430)
276 KOG2041 WD40 repeat protein [G 99.1 2.8E-08 6.1E-13 103.8 22.9 292 308-672 12-326 (1189)
277 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.9E-12 112.5 31.6 274 2-343 569-892 (1057)
278 PRK04043 tolB translocation pr 99.1 1.3E-07 2.7E-12 101.3 28.2 133 23-163 170-313 (419)
279 PLN02919 haloacid dehalogenase 99.0 2.1E-07 4.6E-12 110.8 32.3 165 523-688 685-892 (1057)
280 COG5170 CDC55 Serine/threonine 99.0 3.8E-09 8.2E-14 99.2 13.9 286 243-598 28-367 (460)
281 PRK01029 tolB translocation pr 99.0 5.4E-08 1.2E-12 105.0 24.7 204 499-713 165-388 (428)
282 KOG3914 WD repeat protein WDR4 99.0 2.7E-09 5.9E-14 104.5 12.3 167 523-696 65-235 (390)
283 KOG0309 Conserved WD40 repeat- 99.0 4.3E-09 9.4E-14 110.2 14.0 210 458-685 108-340 (1081)
284 KOG4190 Uncharacterized conser 99.0 1.2E-09 2.6E-14 110.2 9.5 215 459-693 730-957 (1034)
285 KOG1064 RAVE (regulator of V-A 99.0 1.7E-09 3.7E-14 124.0 11.4 198 370-652 2208-2408(2439)
286 PRK04043 tolB translocation pr 99.0 4.9E-08 1.1E-12 104.4 21.4 136 5-149 192-337 (419)
287 KOG4532 WD40-like repeat conta 99.0 2.8E-07 6E-12 85.3 22.2 188 491-683 130-330 (344)
288 KOG0309 Conserved WD40 repeat- 98.9 9E-09 1.9E-13 107.9 13.5 286 245-643 28-340 (1081)
289 KOG0280 Uncharacterized conser 98.9 1.4E-07 3.1E-12 88.4 19.9 209 498-708 45-266 (339)
290 PF15492 Nbas_N: Neuroblastoma 98.9 7.8E-07 1.7E-11 84.1 24.0 203 491-695 11-270 (282)
291 KOG4532 WD40-like repeat conta 98.9 3E-07 6.6E-12 85.0 19.8 195 491-691 86-289 (344)
292 PRK11138 outer membrane biogen 98.9 3.4E-06 7.4E-11 91.0 30.8 315 253-683 69-393 (394)
293 PF08450 SGL: SMP-30/Gluconola 98.9 9.9E-06 2.1E-10 81.2 31.7 171 492-673 54-244 (246)
294 KOG4190 Uncharacterized conser 98.9 1.8E-08 3.9E-13 101.9 11.4 175 36-279 729-914 (1034)
295 KOG3914 WD repeat protein WDR4 98.8 6.3E-08 1.4E-12 95.1 13.4 151 491-651 76-232 (390)
296 KOG0882 Cyclophilin-related pe 98.8 6.6E-07 1.4E-11 89.0 19.6 254 319-650 18-313 (558)
297 PF15492 Nbas_N: Neuroblastoma 98.8 1.2E-05 2.5E-10 76.4 26.6 250 316-653 3-270 (282)
298 KOG4714 Nucleoporin [Nuclear s 98.8 2.3E-07 5E-12 85.5 14.5 153 382-551 100-255 (319)
299 PF06433 Me-amine-dh_H: Methyl 98.8 1.3E-05 2.8E-10 79.7 27.6 131 22-160 17-166 (342)
300 PRK02888 nitrous-oxide reducta 98.7 2.2E-05 4.9E-10 84.4 30.4 173 528-728 284-488 (635)
301 PF08450 SGL: SMP-30/Gluconola 98.7 3E-05 6.5E-10 77.7 28.6 205 491-707 14-236 (246)
302 PRK11138 outer membrane biogen 98.7 2.3E-05 4.9E-10 84.7 29.6 103 56-163 69-182 (394)
303 PF07433 DUF1513: Protein of u 98.6 5.6E-05 1.2E-09 74.4 28.0 171 497-674 75-276 (305)
304 COG5170 CDC55 Serine/threonine 98.6 6.4E-07 1.4E-11 84.6 13.5 211 463-688 25-313 (460)
305 KOG2695 WD40 repeat protein [G 98.6 2E-07 4.3E-12 89.4 9.8 152 536-698 228-390 (425)
306 KOG1832 HIV-1 Vpr-binding prot 98.6 4.2E-08 9.1E-13 105.0 5.6 267 365-717 1096-1381(1516)
307 PF00400 WD40: WD domain, G-be 98.6 1.7E-07 3.7E-12 62.4 6.4 39 644-682 1-39 (39)
308 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.6E-12 89.2 9.0 156 493-653 228-387 (425)
309 PF13360 PQQ_2: PQQ-like domai 98.6 1.4E-05 3.1E-10 79.9 22.7 231 67-407 2-236 (238)
310 PF13360 PQQ_2: PQQ-like domai 98.6 7.1E-05 1.5E-09 74.8 27.5 190 491-689 38-235 (238)
311 KOG4714 Nucleoporin [Nuclear s 98.5 3.9E-07 8.4E-12 84.0 9.2 166 512-685 81-255 (319)
312 PF06433 Me-amine-dh_H: Methyl 98.5 0.00082 1.8E-08 67.2 32.1 200 499-704 118-340 (342)
313 KOG3617 WD40 and TPR repeat-co 98.5 1.7E-05 3.6E-10 85.4 20.7 110 2-117 17-132 (1416)
314 KOG1832 HIV-1 Vpr-binding prot 98.5 8.7E-08 1.9E-12 102.7 3.4 224 450-708 1087-1314(1516)
315 KOG0882 Cyclophilin-related pe 98.4 1.1E-06 2.4E-11 87.4 10.4 197 491-692 22-239 (558)
316 PF00400 WD40: WD domain, G-be 98.4 1.3E-06 2.7E-11 58.2 5.8 39 600-640 1-39 (39)
317 PRK02888 nitrous-oxide reducta 98.3 0.00017 3.7E-09 77.9 24.3 147 528-685 200-405 (635)
318 KOG2066 Vacuolar assembly/sort 98.3 1.8E-05 4E-10 85.1 16.7 172 491-684 51-233 (846)
319 COG3490 Uncharacterized protei 98.3 9.6E-05 2.1E-09 69.8 19.2 144 5-148 72-243 (366)
320 KOG1645 RING-finger-containing 98.3 8.9E-05 1.9E-09 73.3 19.7 247 366-684 189-461 (463)
321 KOG2114 Vacuolar assembly/sort 98.3 8.6E-05 1.9E-09 80.7 21.1 199 491-693 37-252 (933)
322 PF08596 Lgl_C: Lethal giant l 98.3 0.00032 7E-09 73.9 25.3 280 372-683 3-334 (395)
323 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0034 7.3E-08 58.8 28.9 112 95-280 17-132 (354)
324 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00086 1.9E-08 71.0 27.2 64 97-163 1-75 (353)
325 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0019 4.1E-08 68.4 29.7 105 53-158 1-130 (353)
326 KOG1920 IkappaB kinase complex 98.2 0.024 5.1E-07 65.1 40.2 287 45-405 19-326 (1265)
327 PF14583 Pectate_lyase22: Olig 98.2 0.0018 3.9E-08 66.1 27.1 150 4-161 39-224 (386)
328 PF11768 DUF3312: Protein of u 98.2 0.012 2.6E-07 62.4 33.3 116 523-645 208-332 (545)
329 KOG3617 WD40 and TPR repeat-co 98.2 3.3E-05 7.1E-10 83.2 14.8 107 92-272 19-132 (1416)
330 KOG1275 PAB-dependent poly(A) 98.2 5.5E-05 1.2E-09 82.6 16.0 140 491-640 189-340 (1118)
331 cd00216 PQQ_DH Dehydrogenases 98.2 0.0024 5.1E-08 70.8 29.4 163 526-698 222-438 (488)
332 KOG1275 PAB-dependent poly(A) 98.1 4E-05 8.7E-10 83.5 14.7 133 15-158 150-295 (1118)
333 PF04053 Coatomer_WDAD: Coatom 98.1 0.0009 2E-08 71.6 24.1 229 2-273 34-264 (443)
334 PF08596 Lgl_C: Lethal giant l 98.1 0.0019 4E-08 68.3 25.9 267 446-714 4-325 (395)
335 KOG3621 WD40 repeat-containing 98.1 0.00047 1E-08 73.7 21.0 100 15-117 48-155 (726)
336 cd00216 PQQ_DH Dehydrogenases 98.1 0.0054 1.2E-07 68.0 30.2 106 534-652 303-434 (488)
337 KOG1920 IkappaB kinase complex 98.0 0.00036 7.9E-09 79.1 19.9 203 464-685 68-323 (1265)
338 PF06977 SdiA-regulated: SdiA- 98.0 0.0037 7.9E-08 61.0 24.4 212 45-336 22-247 (248)
339 PF11768 DUF3312: Protein of u 98.0 0.012 2.7E-07 62.3 29.1 113 570-684 207-329 (545)
340 KOG1645 RING-finger-containing 98.0 0.00039 8.5E-09 69.0 16.8 131 24-160 175-316 (463)
341 PF06977 SdiA-regulated: SdiA- 98.0 0.0081 1.8E-07 58.7 25.6 204 462-681 19-247 (248)
342 COG0823 TolB Periplasmic compo 98.0 0.00046 9.9E-09 73.6 18.5 185 515-710 187-384 (425)
343 COG0823 TolB Periplasmic compo 98.0 0.00018 3.9E-09 76.6 15.4 148 6-161 198-360 (425)
344 KOG2066 Vacuolar assembly/sort 98.0 0.0007 1.5E-08 73.4 19.4 176 455-642 49-233 (846)
345 COG3391 Uncharacterized conser 98.0 0.0067 1.4E-07 64.8 27.2 154 3-163 33-194 (381)
346 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.018 4E-07 54.1 27.6 110 253-410 23-132 (354)
347 COG3391 Uncharacterized conser 97.9 0.0029 6.2E-08 67.5 23.4 155 2-163 75-243 (381)
348 KOG3621 WD40 repeat-containing 97.9 0.00016 3.4E-09 77.1 13.3 148 491-643 47-198 (726)
349 KOG2114 Vacuolar assembly/sort 97.9 0.0033 7.2E-08 69.0 22.8 160 491-655 79-257 (933)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.042 9.1E-07 61.2 31.2 155 543-698 272-504 (527)
351 KOG1008 Uncharacterized conser 97.7 7E-06 1.5E-10 85.8 0.4 189 491-685 72-276 (783)
352 KOG1897 Damage-specific DNA bi 97.7 0.14 3.1E-06 57.8 48.7 152 523-684 777-942 (1096)
353 PF04841 Vps16_N: Vps16, N-ter 97.7 0.049 1.1E-06 58.6 28.9 55 569-624 217-271 (410)
354 PF03178 CPSF_A: CPSF A subuni 97.7 0.019 4E-07 60.1 24.4 133 22-159 2-157 (321)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.12 2.6E-06 57.6 30.9 61 590-653 441-501 (527)
356 PF04841 Vps16_N: Vps16, N-ter 97.6 0.074 1.6E-06 57.2 28.1 194 465-682 81-285 (410)
357 PRK13616 lipoprotein LpqB; Pro 97.6 0.0017 3.6E-08 72.5 15.7 146 3-158 352-524 (591)
358 COG3386 Gluconolactonase [Carb 97.6 0.031 6.7E-07 56.8 23.2 209 491-708 39-267 (307)
359 PRK13616 lipoprotein LpqB; Pro 97.5 0.0094 2E-07 66.7 21.0 103 45-155 350-472 (591)
360 PF04053 Coatomer_WDAD: Coatom 97.5 0.0041 8.8E-08 66.7 17.3 146 516-684 28-173 (443)
361 COG3386 Gluconolactonase [Carb 97.5 0.045 9.7E-07 55.7 23.7 148 521-674 111-275 (307)
362 KOG1897 Damage-specific DNA bi 97.5 0.33 7.2E-06 55.0 57.2 572 14-685 28-660 (1096)
363 PF08553 VID27: VID27 cytoplas 97.5 0.0047 1E-07 69.8 17.2 142 494-641 499-646 (794)
364 PF03178 CPSF_A: CPSF A subuni 97.4 0.065 1.4E-06 56.1 24.7 172 499-680 62-261 (321)
365 KOG4640 Anaphase-promoting com 97.4 0.00095 2.1E-08 70.5 9.6 92 569-663 21-114 (665)
366 PF00780 CNH: CNH domain; Int 97.3 0.15 3.2E-06 52.0 25.8 104 53-161 4-124 (275)
367 COG3490 Uncharacterized protei 97.3 0.16 3.5E-06 48.9 22.6 70 92-161 71-150 (366)
368 KOG1008 Uncharacterized conser 97.3 9.8E-05 2.1E-09 77.5 1.8 164 459-642 97-275 (783)
369 KOG4640 Anaphase-promoting com 97.3 0.0014 3.1E-08 69.2 9.8 94 612-715 20-114 (665)
370 smart00320 WD40 WD40 repeats. 97.3 0.001 2.2E-08 43.5 6.0 39 644-682 2-40 (40)
371 KOG2444 WD40 repeat protein [G 97.2 0.00046 9.9E-09 63.6 5.1 143 534-685 32-178 (238)
372 PF00780 CNH: CNH domain; Int 97.2 0.13 2.8E-06 52.5 23.4 139 12-163 7-169 (275)
373 PF02897 Peptidase_S9_N: Proly 97.1 0.39 8.4E-06 52.5 27.2 110 5-118 128-262 (414)
374 PF05694 SBP56: 56kDa selenium 97.1 0.12 2.5E-06 53.7 20.6 199 491-692 90-350 (461)
375 PF14761 HPS3_N: Hermansky-Pud 97.0 0.042 9.1E-07 51.1 15.6 140 15-159 31-214 (215)
376 PF10647 Gmad1: Lipoprotein Lp 97.0 0.32 6.9E-06 48.5 23.0 146 522-676 25-187 (253)
377 PF14583 Pectate_lyase22: Olig 97.0 0.38 8.1E-06 49.7 23.4 105 569-675 188-303 (386)
378 PF08553 VID27: VID27 cytoplas 97.0 0.042 9.2E-07 62.4 18.2 138 108-339 504-647 (794)
379 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.099 2.1E-06 43.0 15.4 91 490-594 16-110 (111)
380 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.11 2.4E-06 42.8 15.2 101 571-680 2-110 (111)
381 PF14870 PSII_BNR: Photosynthe 96.7 0.34 7.3E-06 49.1 21.0 108 45-154 145-256 (302)
382 KOG2395 Protein involved in va 96.7 0.035 7.5E-07 57.9 13.9 144 491-641 348-499 (644)
383 smart00320 WD40 WD40 repeats. 96.7 0.0048 1E-07 40.0 5.5 38 601-640 3-40 (40)
384 COG3204 Uncharacterized protei 96.5 0.64 1.4E-05 45.4 19.9 113 45-159 86-210 (316)
385 PF05096 Glu_cyclase_2: Glutam 96.4 0.46 9.9E-06 46.4 18.5 211 79-390 34-250 (264)
386 TIGR03118 PEPCTERM_chp_1 conse 96.4 1.1 2.4E-05 44.2 23.4 73 591-664 223-307 (336)
387 PF02897 Peptidase_S9_N: Proly 96.4 1.6 3.4E-05 47.7 25.6 179 499-684 150-357 (414)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 1.7 3.8E-05 46.1 24.7 81 612-692 307-406 (415)
389 KOG4499 Ca2+-binding protein R 96.3 0.99 2.1E-05 42.3 20.9 136 521-664 109-263 (310)
390 KOG2079 Vacuolar assembly/sort 96.3 0.013 2.7E-07 66.3 8.2 102 580-684 99-203 (1206)
391 PF15390 DUF4613: Domain of un 96.3 2.2 4.7E-05 46.0 24.9 145 7-161 18-188 (671)
392 PF10647 Gmad1: Lipoprotein Lp 96.2 0.25 5.4E-06 49.2 16.3 110 46-159 25-144 (253)
393 PF14870 PSII_BNR: Photosynthe 96.2 1.8 3.8E-05 44.0 28.7 156 516-681 140-301 (302)
394 KOG2395 Protein involved in va 96.0 0.11 2.3E-06 54.5 12.7 144 531-684 344-500 (644)
395 KOG2444 WD40 repeat protein [G 96.0 0.02 4.3E-07 53.2 6.6 142 492-642 33-177 (238)
396 PF07995 GSDH: Glucose / Sorbo 95.9 2.6 5.6E-05 44.1 28.6 102 46-151 3-134 (331)
397 PF12894 Apc4_WD40: Anaphase-p 95.8 0.036 7.8E-07 37.8 5.8 35 44-81 11-45 (47)
398 KOG4499 Ca2+-binding protein R 95.8 1.7 3.7E-05 40.8 18.5 191 21-281 36-251 (310)
399 PF15390 DUF4613: Domain of un 95.8 0.59 1.3E-05 50.1 17.2 150 521-685 20-187 (671)
400 PHA02713 hypothetical protein; 95.8 0.2 4.4E-06 56.4 15.1 181 491-685 306-534 (557)
401 COG3204 Uncharacterized protei 95.8 1.2 2.6E-05 43.6 17.7 165 517-686 82-265 (316)
402 KOG2079 Vacuolar assembly/sort 95.6 0.032 7E-07 63.2 7.7 109 46-159 89-203 (1206)
403 PF12894 Apc4_WD40: Anaphase-p 95.6 0.046 9.9E-07 37.3 5.4 36 610-646 9-44 (47)
404 PF10168 Nup88: Nuclear pore c 95.5 3.7 8E-05 47.4 23.9 59 14-75 34-112 (717)
405 PF05096 Glu_cyclase_2: Glutam 95.2 3.4 7.4E-05 40.5 23.6 172 491-673 58-249 (264)
406 KOG3630 Nuclear pore complex, 95.0 0.32 6.8E-06 56.0 12.8 149 521-673 101-262 (1405)
407 PF13449 Phytase-like: Esteras 94.8 2 4.3E-05 44.8 17.7 163 521-684 20-249 (326)
408 KOG4441 Proteins containing BT 94.8 0.98 2.1E-05 50.9 16.3 181 491-684 335-546 (571)
409 TIGR03074 PQQ_membr_DH membran 94.6 12 0.00025 43.8 24.9 159 491-651 262-486 (764)
410 PLN00033 photosystem II stabil 94.6 1.7 3.8E-05 46.2 16.8 141 7-156 245-396 (398)
411 PHA02713 hypothetical protein; 94.5 1.2 2.5E-05 50.5 16.3 73 578-654 462-545 (557)
412 PHA03098 kelch-like protein; P 94.5 1.1 2.4E-05 50.8 16.2 181 491-684 297-511 (534)
413 TIGR02604 Piru_Ver_Nterm putat 94.3 1 2.3E-05 47.9 14.6 145 521-673 14-202 (367)
414 TIGR03074 PQQ_membr_DH membran 94.3 13 0.00027 43.6 23.9 162 531-692 259-485 (764)
415 PLN00033 photosystem II stabil 94.3 4.2 9.1E-05 43.3 18.7 106 47-157 241-354 (398)
416 PF12234 Rav1p_C: RAVE protein 94.2 1.5 3.3E-05 48.9 15.6 114 521-641 30-155 (631)
417 PRK13684 Ycf48-like protein; P 94.2 2.2 4.8E-05 44.6 16.4 147 5-158 177-330 (334)
418 PF07995 GSDH: Glucose / Sorbo 94.1 8.8 0.00019 40.1 27.8 58 488-545 270-330 (331)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 94.1 0.5 1.1E-05 50.0 11.3 82 45-128 308-410 (415)
420 KOG4441 Proteins containing BT 94.0 2.7 5.8E-05 47.5 17.5 183 490-685 286-500 (571)
421 PF14761 HPS3_N: Hermansky-Pud 93.9 1.5 3.3E-05 41.1 12.7 110 47-161 20-165 (215)
422 PF12234 Rav1p_C: RAVE protein 93.8 3 6.6E-05 46.6 17.0 111 571-684 32-156 (631)
423 PF10168 Nup88: Nuclear pore c 93.6 13 0.00028 43.1 22.1 95 244-347 87-187 (717)
424 PF14781 BBS2_N: Ciliary BBSom 93.6 3.1 6.7E-05 35.7 12.8 103 55-163 9-129 (136)
425 PHA02790 Kelch-like protein; P 93.2 3.5 7.6E-05 45.8 16.7 170 491-675 274-456 (480)
426 PF03022 MRJP: Major royal jel 93.2 11 0.00024 38.3 20.1 118 20-162 32-162 (287)
427 PRK10115 protease 2; Provision 93.0 22 0.00048 41.4 27.9 106 5-115 131-254 (686)
428 PF05694 SBP56: 56kDa selenium 93.0 3.3 7.2E-05 43.4 14.6 129 20-149 220-392 (461)
429 TIGR02604 Piru_Ver_Nterm putat 92.9 5.9 0.00013 42.2 17.5 128 500-632 48-203 (367)
430 COG3823 Glutamine cyclotransfe 92.8 6.8 0.00015 36.4 14.5 172 491-673 58-247 (262)
431 COG3823 Glutamine cyclotransfe 92.5 6.6 0.00014 36.4 14.0 62 99-162 55-122 (262)
432 PF07250 Glyoxal_oxid_N: Glyox 92.3 2.7 5.8E-05 41.0 12.5 149 501-653 48-208 (243)
433 PF13449 Phytase-like: Esteras 92.3 16 0.00035 38.1 23.4 107 522-629 86-231 (326)
434 PF08728 CRT10: CRT10; InterP 92.2 4.5 9.9E-05 45.7 15.6 111 570-683 102-245 (717)
435 COG4257 Vgb Streptogramin lyas 92.0 13 0.00028 36.3 19.0 188 491-686 75-264 (353)
436 PF14727 PHTB1_N: PTHB1 N-term 91.9 20 0.00044 38.4 29.3 187 489-685 145-361 (418)
437 PF07569 Hira: TUP1-like enhan 90.7 1.3 2.9E-05 42.8 8.6 67 52-120 18-99 (219)
438 PF08728 CRT10: CRT10; InterP 90.6 4 8.6E-05 46.2 13.1 119 523-641 103-245 (717)
439 KOG2280 Vacuolar assembly/sort 90.4 13 0.00028 41.7 16.2 91 67-159 63-156 (829)
440 KOG3630 Nuclear pore complex, 90.3 3.3 7.2E-05 48.2 12.2 147 570-717 102-265 (1405)
441 PF10313 DUF2415: Uncharacteri 90.2 1.2 2.7E-05 29.4 5.3 30 89-118 1-35 (43)
442 PRK13684 Ycf48-like protein; P 90.1 27 0.00058 36.6 27.0 24 131-154 173-196 (334)
443 PF10313 DUF2415: Uncharacteri 90.0 1.5 3.3E-05 29.0 5.6 31 45-77 1-34 (43)
444 PF03022 MRJP: Major royal jel 89.7 25 0.00055 35.8 18.4 146 543-689 35-220 (287)
445 PHA03098 kelch-like protein; P 89.6 19 0.00041 40.9 18.2 108 531-646 389-515 (534)
446 TIGR02276 beta_rpt_yvtn 40-res 89.5 1.5 3.2E-05 29.0 5.8 38 98-138 1-41 (42)
447 PHA02790 Kelch-like protein; P 89.4 11 0.00024 41.9 15.7 131 23-161 288-425 (480)
448 PRK10115 protease 2; Provision 89.4 49 0.0011 38.6 24.1 173 498-683 152-343 (686)
449 KOG2377 Uncharacterized conser 89.1 8.1 0.00018 40.3 12.7 119 463-601 65-188 (657)
450 TIGR02276 beta_rpt_yvtn 40-res 89.1 2.2 4.8E-05 28.2 6.3 41 54-96 1-41 (42)
451 KOG1900 Nuclear pore complex, 89.0 7.3 0.00016 46.5 13.9 142 15-163 92-276 (1311)
452 KOG1916 Nuclear protein, conta 88.7 0.25 5.4E-06 55.2 2.1 185 499-689 111-328 (1283)
453 KOG2280 Vacuolar assembly/sort 88.7 48 0.001 37.5 20.5 39 520-558 216-254 (829)
454 TIGR03606 non_repeat_PQQ dehyd 88.5 19 0.00042 39.0 15.9 115 519-633 28-166 (454)
455 PF14781 BBS2_N: Ciliary BBSom 88.1 16 0.00036 31.5 12.3 120 526-650 4-133 (136)
456 COG4590 ABC-type uncharacteriz 88.0 1.9 4.1E-05 44.6 7.5 174 512-690 212-392 (733)
457 PF07250 Glyoxal_oxid_N: Glyox 87.9 8.1 0.00018 37.8 11.6 82 69-151 47-138 (243)
458 PF10433 MMS1_N: Mono-function 87.0 58 0.0013 36.6 22.1 144 12-159 222-388 (504)
459 PF05935 Arylsulfotrans: Aryls 86.9 55 0.0012 36.3 19.3 122 526-654 153-313 (477)
460 COG5167 VID27 Protein involved 86.9 13 0.00029 39.4 12.9 143 491-642 482-632 (776)
461 PF07569 Hira: TUP1-like enhan 86.2 3.9 8.5E-05 39.5 8.5 70 528-598 18-95 (219)
462 PF03088 Str_synth: Strictosid 86.0 5.5 0.00012 31.8 7.7 49 22-73 37-85 (89)
463 KOG2247 WD40 repeat-containing 86.0 0.21 4.5E-06 51.9 -0.3 134 7-149 41-178 (615)
464 KOG4460 Nuclear pore complex, 85.7 12 0.00025 40.0 11.8 77 614-690 105-204 (741)
465 PF12768 Rax2: Cortical protei 85.6 14 0.00031 37.1 12.3 97 23-122 17-129 (281)
466 PF10433 MMS1_N: Mono-function 85.0 72 0.0016 35.8 36.3 50 46-98 45-103 (504)
467 KOG2247 WD40 repeat-containing 84.8 0.11 2.4E-06 53.9 -2.9 143 523-676 37-180 (615)
468 TIGR03548 mutarot_permut cycli 84.8 40 0.00088 35.1 16.2 66 531-601 123-197 (323)
469 PF02333 Phytase: Phytase; In 84.7 56 0.0012 34.4 23.9 190 490-686 69-292 (381)
470 COG5167 VID27 Protein involved 84.6 18 0.0004 38.4 12.6 145 6-160 472-633 (776)
471 KOG4460 Nuclear pore complex, 84.6 23 0.00049 38.0 13.2 25 522-546 105-129 (741)
472 KOG2377 Uncharacterized conser 84.5 20 0.00042 37.7 12.5 146 315-539 27-172 (657)
473 KOG1900 Nuclear pore complex, 83.4 12 0.00027 44.7 12.0 143 532-685 91-273 (1311)
474 PF11635 Med16: Mediator compl 83.2 1E+02 0.0022 36.5 19.9 68 612-679 259-345 (753)
475 KOG1916 Nuclear protein, conta 83.1 1.7 3.6E-05 49.1 4.9 142 23-168 154-332 (1283)
476 PF12768 Rax2: Cortical protei 82.8 11 0.00024 37.9 10.2 91 69-159 17-123 (281)
477 TIGR03606 non_repeat_PQQ dehyd 82.3 38 0.00082 36.8 14.5 105 569-675 30-166 (454)
478 PRK13615 lipoprotein LpqB; Pro 82.3 89 0.0019 35.1 17.7 155 524-689 337-507 (557)
479 PF10214 Rrn6: RNA polymerase 81.8 1.2E+02 0.0026 36.1 21.1 120 521-643 146-277 (765)
480 PF07676 PD40: WD40-like Beta 81.1 5.3 0.00011 25.9 5.0 29 45-73 9-38 (39)
481 PRK13613 lipoprotein LpqB; Pro 79.8 1E+02 0.0023 35.1 17.5 152 522-683 364-536 (599)
482 PF05935 Arylsulfotrans: Aryls 79.7 36 0.00079 37.7 13.9 81 67-149 127-208 (477)
483 TIGR03547 muta_rot_YjhT mutatr 79.5 88 0.0019 33.0 17.3 12 622-633 256-267 (346)
484 TIGR03032 conserved hypothetic 78.7 66 0.0014 32.6 13.5 124 4-141 155-315 (335)
485 COG5276 Uncharacterized conser 78.5 75 0.0016 31.7 26.8 183 491-684 183-369 (370)
486 KOG1983 Tomosyn and related SN 78.4 28 0.0006 42.3 13.2 26 663-688 243-268 (993)
487 PF10214 Rrn6: RNA polymerase 78.4 1.5E+02 0.0034 35.2 21.4 164 518-685 77-277 (765)
488 PF02333 Phytase: Phytase; In 78.2 96 0.0021 32.7 24.9 152 499-650 127-299 (381)
489 PF11725 AvrE: Pathogenicity f 78.0 1.2E+02 0.0025 38.2 17.7 375 40-546 360-769 (1774)
490 PF11715 Nup160: Nucleoporin N 77.7 9.6 0.00021 43.4 9.0 73 578-650 156-256 (547)
491 PF11715 Nup160: Nucleoporin N 76.8 12 0.00027 42.4 9.6 39 569-607 215-257 (547)
492 PF08801 Nucleoporin_N: Nup133 76.3 51 0.0011 36.0 13.9 31 310-340 189-220 (422)
493 PF12657 TFIIIC_delta: Transcr 75.6 21 0.00045 33.1 9.1 31 656-686 87-123 (173)
494 COG4590 ABC-type uncharacteriz 75.4 19 0.00041 37.7 9.1 151 6-163 226-390 (733)
495 PF07676 PD40: WD40-like Beta 75.1 15 0.00032 23.7 5.8 32 650-681 4-38 (39)
496 PF12657 TFIIIC_delta: Transcr 74.9 18 0.00039 33.5 8.5 26 2-29 6-31 (173)
497 PF14269 Arylsulfotran_2: Aryl 74.6 1.1E+02 0.0023 31.5 22.2 112 47-158 59-219 (299)
498 PF08801 Nucleoporin_N: Nup133 74.0 80 0.0017 34.4 14.7 31 655-685 190-220 (422)
499 PF03088 Str_synth: Strictosid 73.0 40 0.00086 27.0 8.6 40 108-150 37-76 (89)
500 smart00036 CNH Domain found in 72.3 1.2E+02 0.0027 31.1 25.1 58 55-117 12-74 (302)
No 1
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.1e-77 Score=599.23 Aligned_cols=801 Identities=40% Similarity=0.665 Sum_probs=614.6
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
++++..|- +++++|++|+.|++||++..+|.+++..|. .+++|+|||++|+|+|+|..|..+.++||+++.-..+..
T Consensus 41 ~gLa~~p~-Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssR--k~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAE 117 (1080)
T KOG1408|consen 41 NGLASVPC-SGLCAYPAGCVVVLFNVDSCTQSHLVNSSR--KPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAE 117 (1080)
T ss_pred Cccccccc-ccceeeccCcEEEEEcccccchhheecccC--cceeEEEEcCCCcEEEecccCCCccceeeeeccccchhh
Confidence 45666776 469999999999999999999999999998 899999999999999999988899999999999999999
Q ss_pred eeccccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcc
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~ 159 (882)
|..|+..|+|++|+|.++||++.+ -.|.+|||........-+.. ..|..++|+.||.++++++..+|++|.++
T Consensus 118 fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkis---s~Vsav~fsEdgSYfvT~gnrHvk~wyl~ 194 (1080)
T KOG1408|consen 118 FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKIS---SVVSAVAFSEDGSYFVTSGNRHVKLWYLQ 194 (1080)
T ss_pred hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccc---eeEEEEEEccCCceeeeeeeeeEEEEEee
Confidence 999999999999999999999998 57899999877666555544 68999999999999999999999999998
Q ss_pred cCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
.+.. ....+.+-+....++...+..|.++.|... ...-..|+++..|.++.|...+...+++
T Consensus 195 ~~~K-------ykdpiPl~gRs~~lg~lr~n~f~avaCg~g-----------icAestfait~qGhLvEFSsRRLLDKWV 256 (1080)
T KOG1408|consen 195 IQSK-------YKDPIPLPGRSYFLGNLRFNEFLAVACGVG-----------ICAESTFAITAQGHLVEFSSRRLLDKWV 256 (1080)
T ss_pred cccc-------ccCCccccchhhhccccccchhhhhhhcCc-----------ccccceEEEecccceeeechhhhhhhhh
Confidence 7653 122233333333334444444444333221 1122478899999999999998888888
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhcc-ccccCCCCCCcEEEee
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATEL-YFKLTPTIPNAIACQF 318 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (882)
..+.-.+-+++-..++|++|+.+|.|++|+.++...+.+++.+........... ..... ...-....++.++|.|
T Consensus 257 qcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~----q~~~~~s~~~~a~fPD~IA~~F 332 (1080)
T KOG1408|consen 257 QCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLS----QPEPKNSESSPAIFPDAIACQF 332 (1080)
T ss_pred hhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcc----cccccccccCcccCCceeEEEe
Confidence 777666666666679999999999999999999999988886654332111100 00011 1122346789999999
Q ss_pred cCCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEE
Q 047837 319 STSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRL 397 (882)
Q Consensus 319 s~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~v 397 (882)
.+.. ++.+.+.|+.+++||+++.....++..+.-|..+||+++.+++ +.|...-.|+. .+ .|+|++.|++||+
T Consensus 333 det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~-nv~~~~~aclp----~~-cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC-NVHSPTAACLP----RG-CFTTCSSDGTIRL 406 (1080)
T ss_pred cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc-cccCcccccCC----cc-ceeEecCCCcEEE
Confidence 9775 5777888999999999999999999999999999999999887 77777777763 22 3999999999999
Q ss_pred EecCCCc---eeeecccCCccceeeecCC----cceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEE------------
Q 047837 398 WDLALQS---ELSKDVLGHESLNIEPMST----AHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTL------------ 458 (882)
Q Consensus 398 wd~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------ 458 (882)
|++..+. ..++-......+.+..... -+....+.++........+..++++++++|+|+.+
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9998632 1111111111111111111 11234455666666677778899999999999884
Q ss_pred ---------EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 459 ---------LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 459 ---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
.+.+|+..|.|+.|+...- ...+||+++.|..|+|||+..++.++.++.+|...|+++.|.
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~----------~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVL----------TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchh----------hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 3678999999999986532 124899999999999999999999999999999999999999
Q ss_pred cCC--CEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 530 CNG--RKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 530 ~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
.+| ..+++++.|+.|.+--.+.... -.++..+........+++++..|..++++++++|+.|+|||+.+|+..+.|+
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK 635 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASS-GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK 635 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccC-ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec
Confidence 877 7899999999777644443333 3344444444455789999999999999999999999999999999999998
Q ss_pred e-ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 608 Q-AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 608 ~-~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
. ++|.+....+...|.|-|||+.+.|+++.++|..+|+++..+.||...|+.|.|.+|-+.|++++.||.|.||.+...
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 5 356788999999999999999999999999999999999999999999999999999999999999999999999631
Q ss_pred CCCcc--------cCCCCCcccEEEecCCCeEEEecccccccccCcCcCCCccccceecCCceeeEEEecCCchhhhhcc
Q 047837 687 LPPRN--------FAQPAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQIGPHLHYHGVKPHLTSAFKFSISRLPKWAQKK 758 (882)
Q Consensus 687 ~~~~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 758 (882)
.-... ..........-..|+. ..+....+.+. ..........+++++.-..|+++++|+|++.+
T Consensus 716 mii~m~~r~~~lr~rq~~~~~~~pl~p~~-------p~d~~~~~~p~-~e~~~pqlq~~s~~~~e~~~~v~~LP~wa~~k 787 (1080)
T KOG1408|consen 716 MIIRMVNRNGRLRVRQLEKFIAVPLEPDN-------PNDASCSANPK-VEENAPQLQQRSPWTSEFKFSVSRLPKWAQAK 787 (1080)
T ss_pred HhHHHHHHhhHHHHHhccCCcCCCCCCCC-------CCCCccccCcc-ccCCcccccccCCcccccccChhhhhhHHHhh
Confidence 11000 0000000011111111 01111111111 11111111345666777889999999999999
Q ss_pred ccccccccCCcccccccccccccCCCcccCCCCCCCCceeecCCCCCCcCCCCceeeeeccccccccCCCCCCCCccccc
Q 047837 759 VTDSEIVPGNLDFSLSQEVEKKSLSPFVGDVGGYSPESQEVQIPSNHDLEDSNSCTSCFSTSFSDAKKSQSSPLPQETVS 838 (882)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (882)
.+.+.+...++..++++.+.-+...... .+. +...++++|++. .|...-+.+.+.++++.+++++ +|+++++
T Consensus 788 ~~t~~~~~~~~~~~~~~~h~~~s~A~~~---~~~-~~~~~~~~p~~~-rr~~~~~~g~l~~~~~~~~~s~---l~~~~pS 859 (1080)
T KOG1408|consen 788 VETSDIATNCQDSISNQKHEDKSMANTI---DNA-SVNLEYQTPKQG-SRTENACLGSLSKSSNDTETSG---LQGDDPS 859 (1080)
T ss_pred hhhhhhhhcCCCCCccccccchhhhhhc---cCC-cccccccCCCCC-CCccccccccccccccchhhcc---CcCCCcc
Confidence 9999998888887777766666544432 111 567778888873 6778889999999999999999 9999999
Q ss_pred cccccceeEEEEeeeccccCCcccccc
Q 047837 839 SFALGKRWLRVYTVCMDLLNSPEVLSL 865 (882)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (882)
+..+.+||++||++|.|++|.|++.-.
T Consensus 860 ~~~~~~~~n~i~~~~~~~~~~~~~~~s 886 (1080)
T KOG1408|consen 860 NRKEKTRWNTIYNVCLDLLNTPNIQAS 886 (1080)
T ss_pred ccCCCccceeEcccchhhcCCchhhhh
Confidence 999999999999999999999998654
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-53 Score=432.58 Aligned_cols=535 Identities=16% Similarity=0.225 Sum_probs=422.6
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEe
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISEL 84 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l 84 (882)
-++++++|. .++..+++.|.+-|+.+++..........+..|++++++||+.+|.++.. ...+++|+++++++++.+
T Consensus 24 ~~~~s~nG~-~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r--s~llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 24 PVAWSSNGQ-HLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR--SQLLRVWSLPTGKLIRSW 100 (775)
T ss_pred ceeECCCCC-EEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec--cceEEEEEcccchHhHhH
Confidence 377888887 77777888999999999988422223333478999999999999999966 779999999999999999
Q ss_pred ec-cccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCC--EEEEECC-CcEEEEEc
Q 047837 85 KG-HLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAK--FIVTAGK-KHLKFWTI 158 (882)
Q Consensus 85 ~~-h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~--~l~~~~~-~~i~iwd~ 158 (882)
+. |+++|.-++|+|.|.+|++|+ +.++|||+..+.++..+++|+ +.|.++.|.|+-. +|+++.. +.+++||+
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g--GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG--GVVSSLLFHPHWNRWLLASGATDGTVRVWNL 178 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC--ceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence 98 999999999999999999999 999999999999999999998 9999999999755 4566554 79999999
Q ss_pred ccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeE
Q 047837 159 GSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKS 238 (882)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~ 238 (882)
..... -...+..|..
T Consensus 179 ~~~~t-------cl~~~~~H~S---------------------------------------------------------- 193 (775)
T KOG0319|consen 179 NDKRT-------CLHTMILHKS---------------------------------------------------------- 193 (775)
T ss_pred ccCch-------HHHHHHhhhh----------------------------------------------------------
Confidence 75432 1122223333
Q ss_pred eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 239 VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 239 ~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.+++++|++|+..+++++.|..|.+||+.+-+....++ ....+-++.+
T Consensus 194 ----~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp----------------------------~ye~~E~vv~ 241 (775)
T KOG0319|consen 194 ----AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP----------------------------LYESLESVVR 241 (775)
T ss_pred ----heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec----------------------------hhhheeeEEE
Confidence 33899999999999999999999999997666555543 2223335555
Q ss_pred cCC------CeEEEEeCCceEEEEEcccccccceeeee---------------------ecCcceee---eecccCCCCC
Q 047837 319 STS------EKLVVVYGDHSLYVWDIHDVNEATRCCVL---------------------VSHSACIW---DIKNLGCENM 368 (882)
Q Consensus 319 s~~------~~ll~~~~d~~i~iwd~~~~~~~~~~~~~---------------------~~~~~~v~---~i~~~~~~~~ 368 (882)
.++ +.+++++++|.+++||.+++........- ..++--+. .+.......+
T Consensus 242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG 321 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG 321 (775)
T ss_pred echhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence 555 24667777888888887765432211110 00000111 1111222355
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
....|..++|-.++.++++.++..+.+|+++..+..+
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c------------------------------------------- 358 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC------------------------------------------- 358 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCce-------------------------------------------
Confidence 6777888887768889999999999999997765332
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC---ceeEEEeecCCCCEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN---FDLIESIDDHSAAVTA 525 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~---~~~~~~~~~h~~~v~~ 525 (882)
.++.+|...|.++.....+. +|++|+.|.++++|.++++ ..++....+|...|.+
T Consensus 359 ---------~ii~GH~e~vlSL~~~~~g~-------------llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 359 ---------QIIPGHTEAVLSLDVWSSGD-------------LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ---------EEEeCchhheeeeeecccCc-------------EEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 25779999999998555555 8999999999999988543 2345566789999999
Q ss_pred EEEccC-CCEEEEEeCCCeEEEEeCccCcc---ceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc
Q 047837 526 VKFTCN-GRKILSCSADRSLVVRDVVETNS---AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 526 ~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~ 601 (882)
++++.. ..+|++++.|.++++|++...+. ...+........|...|++++++|+.+++|+|+.|++.++|+++.+.
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~ 496 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR 496 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce
Confidence 999774 46889999999999999985221 22222233445788999999999999999999999999999999999
Q ss_pred eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 602 LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
.+.++. +|...+.++.|+|..+.||+++.|++|+||.+.+..++.++.||...|..+.|-.+|+.|+|++.||.|++|
T Consensus 497 l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 497 LLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred EEEEee--CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcccC-CCCCcccEEEecCCC
Q 047837 682 EKYGILPPRNFA-QPAALSPIIFCEEED 708 (882)
Q Consensus 682 d~~~~~~~~~~~-~~~~~~~~~~s~~~~ 708 (882)
++.+..+..++. +..-+..+..++..+
T Consensus 575 nikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 575 NIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred eccchhhhhhhhhccceeEEEeecCccc
Confidence 999999988874 344455554444444
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-53 Score=430.76 Aligned_cols=509 Identities=19% Similarity=0.253 Sum_probs=411.4
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEe-cCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVS-HRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI 81 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~-h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~ 81 (882)
.+.++..||+...+...-+..+++|++.+++.++.+.. |. ++|.-++|+|.|.++|+|+. |+.|+|||+..+.+.
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He--~Pvi~ma~~~~g~LlAtgga--D~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE--APVITMAFDPTGTLLATGGA--DGRVKVWDIKNGYCT 140 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC--CCeEEEEEcCCCceEEeccc--cceEEEEEeeCCEEE
Confidence 35678889965333333467999999999999998877 88 89999999999999999954 999999999999999
Q ss_pred EEeeccccceeEEEECCCCC--EEEEEc--CEEEEEEcCccee-eeeeecCCcccceeEEEEccCCCEEEEECC-CcEEE
Q 047837 82 SELKGHLYGVECIAFSPDGE--HLVTVG--GYIYLWNWRSAML-VMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKF 155 (882)
Q Consensus 82 ~~l~~h~~~V~~lafspdg~--~Las~~--~~i~iWd~~~g~~-~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~i 155 (882)
+.|+||.+.|.++.|.|+-. .|+++. +++++||+.+... +..+..|. ..|++++|++|+..++++++ +.+.+
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~--S~vtsL~~~~d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK--SAVTSLAFSEDSLELLSVGRDKVIIV 218 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh--hheeeeeeccCCceEEEeccCcEEEE
Confidence 99999999999999999755 467777 9999999996654 77788877 89999999999999998887 67999
Q ss_pred EEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCcee
Q 047837 156 WTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSV 235 (882)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~ 235 (882)
||+...+. .++.+..+
T Consensus 219 wd~~~~~~--l~~lp~ye-------------------------------------------------------------- 234 (775)
T KOG0319|consen 219 WDLVQYKK--LKTLPLYE-------------------------------------------------------------- 234 (775)
T ss_pred eehhhhhh--hheechhh--------------------------------------------------------------
Confidence 99955443 22221111
Q ss_pred eeEeeceeeeeEEEecC-----CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCC
Q 047837 236 TKSVDLKVKNGFALSAS-----SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTI 310 (882)
Q Consensus 236 ~~~~~~~~~~~~~~s~d-----~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (882)
.+.++.+-++ +.++++++.+|.+++||.+++++......+. .
T Consensus 235 -------~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~--------------------------~ 281 (775)
T KOG0319|consen 235 -------SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD--------------------------S 281 (775)
T ss_pred -------heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC--------------------------c
Confidence 1134444444 6799999999999999999998876654221 0
Q ss_pred CCcE-EEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCC------------------------
Q 047837 311 PNAI-ACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGC------------------------ 365 (882)
Q Consensus 311 ~~~~-~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~------------------------ 365 (882)
+.+. .+.....+++++...|..+.++|.++.+.. ..+.|..+.|.++.|.+.
T Consensus 282 ~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~---k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c 358 (775)
T KOG0319|consen 282 EEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV---KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC 358 (775)
T ss_pred hhhhcceeccccCceEEEEccceEEEEEccccEEe---hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce
Confidence 0011 234445678999999999999988776433 346666677777666542
Q ss_pred --CCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccc
Q 047837 366 --ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVST 443 (882)
Q Consensus 366 --~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (882)
..+|+..|.++... .+|.+|+||+.|.++++|.++.+.....
T Consensus 359 ~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~----------------------------------- 402 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSL----------------------------------- 402 (775)
T ss_pred EEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhh-----------------------------------
Confidence 27799999999844 4778999999999999999854332110
Q ss_pred cCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--e--eEE----E
Q 047837 444 QGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--D--LIE----S 515 (882)
Q Consensus 444 ~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--~--~~~----~ 515 (882)
.+....+|...|.+++++..+. .++++++.|.++++|++.... . ... .
T Consensus 403 ------------~~a~~~gH~~svgava~~~~~a------------sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 403 ------------CVAQANGHTNSVGAVAGSKLGA------------SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred ------------hhhhhcccccccceeeecccCc------------cEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 0112458999999999976665 389999999999999997621 1 111 3
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 047837 516 IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSF 595 (882)
Q Consensus 516 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw 595 (882)
...|...|++++++|+.+.+|+|+.|++.++|+++... ..... .+|...+.++.|+|..+.+++++.|++|+||
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vL-----sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVL-----SGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEe-----eCCccceEEEEeccccceeEeccCCceEEEE
Confidence 34699999999999999999999999999999998332 22222 3455799999999999999999999999999
Q ss_pred EccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC
Q 047837 596 SIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 596 d~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d 675 (882)
.+.+..++++|. +|...|..+.|-.+|+.|++++.||-|+||++++++++.++.+|...|++++-+++..+++||+.|
T Consensus 533 ~is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~D 610 (775)
T KOG0319|consen 533 SISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGD 610 (775)
T ss_pred Eeccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCC
Confidence 999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCC
Q 047837 676 GLQRVKEKYG 685 (882)
Q Consensus 676 g~i~vwd~~~ 685 (882)
|.|.+|.=.+
T Consensus 611 g~i~~wkD~T 620 (775)
T KOG0319|consen 611 GRIIFWKDVT 620 (775)
T ss_pred eEEEEeecCc
Confidence 9999997543
No 4
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-49 Score=407.21 Aligned_cols=544 Identities=19% Similarity=0.262 Sum_probs=420.8
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
+.++|.|||. .++.+.|+.|.|+|++.++-....-.+. ..|+++++||+|.+|.+. +..|...+-++.....++.
T Consensus 18 Gnl~ft~dG~-sviSPvGNrvsv~dLknN~S~Tl~~e~~--~NI~~ialSp~g~lllav--dE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 18 GNLVFTKDGN-SVISPVGNRVSVFDLKNNKSYTLPLETR--YNITRIALSPDGTLLLAV--DERGRALLVSLLSRSVLHR 92 (893)
T ss_pred CcEEECCCCC-EEEeccCCEEEEEEccCCcceeEEeecC--CceEEEEeCCCceEEEEE--cCCCcEEEEecccceeeEE
Confidence 5789999987 8999999999999999887765544555 789999999999999888 5588899999988888888
Q ss_pred eeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcce--------eeeeeecCCcccceeEEEEccCCCEEEEECC-CcE
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAM--------LVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHL 153 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~--------~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i 153 (882)
+. .+.+|.|+.|||||+++|.+. +.+.||...... +.++..+|- ..|+++.|+.|.++|++++. -.+
T Consensus 93 f~-fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~f--ddi~si~Ws~DSr~l~~gsrD~s~ 169 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHF--DDITSIDWSDDSRLLVTGSRDLSA 169 (893)
T ss_pred Ee-ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCc--cceeEEEeccCCceEEeccccceE
Confidence 87 678999999999999999998 999999875432 234445554 89999999999999999887 579
Q ss_pred EEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCc
Q 047837 154 KFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGL 233 (882)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~ 233 (882)
++|.++..+.. ....+.+|..+|
T Consensus 170 rl~~v~~~k~~------~~~~l~gHkd~V--------------------------------------------------- 192 (893)
T KOG0291|consen 170 RLFGVDGNKNL------FTYALNGHKDYV--------------------------------------------------- 192 (893)
T ss_pred EEEEecccccc------ceEeccCCCcce---------------------------------------------------
Confidence 99998765431 122233444444
Q ss_pred eeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCC---------CCccccchhhhcc-c
Q 047837 234 SVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNG---------ENDTVSTAKATEL-Y 303 (882)
Q Consensus 234 ~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~ 303 (882)
-++-|..+...+++.+.||.+.+|.....-.... ...+...| ............. .
T Consensus 193 -----------vacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~---~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 193 -----------VACFFGANSLDLYTVSKDGALFVWTCDLRPPELD---KAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred -----------EEEEeccCcceEEEEecCceEEEEEecCCCcccc---cccccccccccccccccchhhhcceEEEEEEe
Confidence 5677888888899999999999998763200000 00000111 0000100011111 1
Q ss_pred cccCCCCCCcEEEeecCCCeEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 304 FKLTPTIPNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 304 ~~~~~~~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
-.+......+.+++|++..++++.+. .|...++.+.+...... + .....+|..++|+ ..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~-------------L------Sis~~~I~t~~~N-~t 318 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHS-------------L------SISDQKILTVSFN-ST 318 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEE-------------e------ecccceeeEEEec-cc
Confidence 12233347889999999988776555 78888999866433221 1 1134678888888 78
Q ss_pred CcEEEEeeCC-CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEee
Q 047837 383 GVSFSTCSAD-GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLD 461 (882)
Q Consensus 383 ~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 461 (882)
|+.|+.|+.. |.+.||+..+..-+. ..+
T Consensus 319 GDWiA~g~~klgQLlVweWqsEsYVl---------------------------------------------------KQQ 347 (893)
T KOG0291|consen 319 GDWIAFGCSKLGQLLVWEWQSESYVL---------------------------------------------------KQQ 347 (893)
T ss_pred CCEEEEcCCccceEEEEEeeccceee---------------------------------------------------ecc
Confidence 9999988764 899999998755432 356
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD 541 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 541 (882)
+|-..+.+++++|+++ ++|+|++||.|+|||..++ -+..++..|+..|+.+.|+..|+.+++.+.|
T Consensus 348 gH~~~i~~l~YSpDgq-------------~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQ-------------LIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ccccceeeEEECCCCc-------------EEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 8999999999999998 9999999999999999988 6888999999999999999999999999999
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC-cEEEEEccCCceEEEEEeccCCCCcEEEEE
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK-KINSFSIAAGKLIRSFKQAKDFGDPMKVTV 620 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 620 (882)
|+|+.||+........+..+.. ....+++..|.|..+.+|+.|. .|.+|++++|+++-.+. +|.++|.+++|
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p-----~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f 486 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSF 486 (893)
T ss_pred CeEEeeeecccceeeeecCCCc-----eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEE
Confidence 9999999987665555443332 4678999999999999999987 79999999999999998 99999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCe-EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccC------
Q 047837 621 DPSGSYLVCSYSNKSICLYDFISGE-MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFA------ 693 (882)
Q Consensus 621 spdg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~------ 693 (882)
+|+|..||+++.|++|++||+-... .+.++. +...++.++|+|||+.|+++..||.|-+||+....+...+.
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~ 565 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS 565 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcc
Confidence 9999999999999999999996543 334444 77899999999999999999999999999998654442221
Q ss_pred ---------------CCCCcccEEEecCCCeEEEecccccc
Q 047837 694 ---------------QPAALSPIIFCEEEDQKCRMDSVNMS 719 (882)
Q Consensus 694 ---------------~~~~~~~~~~s~~~~~~~~~~~~~~~ 719 (882)
....+..+++|+++..++.....+..
T Consensus 566 ~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 566 GGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred ccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 12445678888888777666554444
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-50 Score=392.80 Aligned_cols=510 Identities=19% Similarity=0.274 Sum_probs=396.8
Q ss_pred ccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee--eEEee
Q 047837 8 KKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF--ISELK 85 (882)
Q Consensus 8 ~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~--~~~l~ 85 (882)
..|.|. .++|++|+.|++-+++.......+.+|. ..++-..+||.|-|+|+| +..|+|+|||....+. ..+++
T Consensus 26 ~dpkgd-~ilY~nGksv~ir~i~~~~~~~iYtEH~--~~vtVAkySPsG~yiASG--D~sG~vRIWdtt~~~hiLKnef~ 100 (603)
T KOG0318|consen 26 GDPKGD-NILYTNGKSVIIRNIDNPASVDIYTEHA--HQVTVAKYSPSGFYIASG--DVSGKVRIWDTTQKEHILKNEFQ 100 (603)
T ss_pred cCCCCC-eEEEeCCCEEEEEECCCccceeeecccc--ceeEEEEeCCCceEEeec--CCcCcEEEEeccCcceeeeeeee
Confidence 345554 8999999999999999999999999998 789999999999999999 5589999999876332 24567
Q ss_pred ccccceeEEEECCCCCEEEEEc------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCC-EEEEECC-CcEEEEE
Q 047837 86 GHLYGVECIAFSPDGEHLVTVG------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAK-FIVTAGK-KHLKFWT 157 (882)
Q Consensus 86 ~h~~~V~~lafspdg~~Las~~------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~-~l~~~~~-~~i~iwd 157 (882)
.-.++|..|+|+.|+++|++.+ |.+.+|| +|.-+..+.+|. ..|.++.|-|... .++++++ +.|.+|+
T Consensus 101 v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhS--r~ins~~~KpsRPfRi~T~sdDn~v~ffe 176 (603)
T KOG0318|consen 101 VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHS--RRINSVDFKPSRPFRIATGSDDNTVAFFE 176 (603)
T ss_pred ecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccc--eeEeeeeccCCCceEEEeccCCCeEEEee
Confidence 7889999999999999999887 5666666 788888999998 8999999999766 5778877 6788887
Q ss_pred cccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeee
Q 047837 158 IGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTK 237 (882)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~ 237 (882)
-..-+. ... .
T Consensus 177 GPPFKF--------k~s--------------------------------------------------------------~ 186 (603)
T KOG0318|consen 177 GPPFKF--------KSS--------------------------------------------------------------F 186 (603)
T ss_pred CCCeee--------eec--------------------------------------------------------------c
Confidence 432222 111 1
Q ss_pred EeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEe
Q 047837 238 SVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQ 317 (882)
Q Consensus 238 ~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (882)
..|.+.++++.|+|||.++|+++.||.|.+||-.+|+.+..+.- ..+|.+.+++++
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~------------------------~~aHkGsIfals 242 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED------------------------SDAHKGSIFALS 242 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC------------------------CCCccccEEEEE
Confidence 12344559999999999999999999999999999998877641 235777888999
Q ss_pred ecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEE
Q 047837 318 FSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIR 396 (882)
Q Consensus 318 ~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~ 396 (882)
|+||++ +++++.|.+++|||+.+......... +.. +- +..|-| .| + ...|++.+.+|+|.
T Consensus 243 WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~--~~~--v~-----------dqqvG~-lW--q-kd~lItVSl~G~in 303 (603)
T KOG0318|consen 243 WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM--GST--VE-----------DQQVGC-LW--Q-KDHLITVSLSGTIN 303 (603)
T ss_pred ECCCCceEEEecCCceEEEEEeeccceEEEeec--CCc--hh-----------ceEEEE-EE--e-CCeEEEEEcCcEEE
Confidence 999985 88889999999999988754433211 111 10 111222 22 2 56799999999999
Q ss_pred EEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCC
Q 047837 397 LWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSS 476 (882)
Q Consensus 397 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~ 476 (882)
+++......+ .++.+|...|+++..++++
T Consensus 304 ~ln~~d~~~~---------------------------------------------------~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 304 YLNPSDPSVL---------------------------------------------------KVISGHNKSITALTVSPDG 332 (603)
T ss_pred EecccCCChh---------------------------------------------------heecccccceeEEEEcCCC
Confidence 9999876532 2467999999999999999
Q ss_pred CCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce
Q 047837 477 KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY 556 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 556 (882)
. +|++|+.||.|.-|+..++......-..|...|.+++-+..+ .+++++.|.++++.++.......
T Consensus 333 ~-------------~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 333 K-------------TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred C-------------EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccc
Confidence 8 999999999999999988744333336799999999987544 67788889999999774221100
Q ss_pred ----ee---------ecc-----------------c---eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceE
Q 047837 557 ----KI---------SRR-----------------H---QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLI 603 (882)
Q Consensus 557 ----~~---------~~~-----------------~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~ 603 (882)
++ ... . ......-...+++++|++..+++|++|++|++|.+..+.+.
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 00 000 0 00011224578999999999999999999999999976665
Q ss_pred EEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEE-EccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 604 RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAK-AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 604 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
.......|.++|+.++||||+.|||++...+.+.+||+.+.+.... +.-|+..|.+|+|+|+.+++|||+.|..|.||+
T Consensus 479 ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 479 EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 5544458999999999999999999999999999999999877433 444999999999999999999999999999999
Q ss_pred CCCCCCCccc--CCCCCcccEEEe
Q 047837 683 KYGILPPRNF--AQPAALSPIIFC 704 (882)
Q Consensus 683 ~~~~~~~~~~--~~~~~~~~~~~s 704 (882)
+..+...-.. .++..+..+.|-
T Consensus 559 v~kP~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 559 VKKPAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred ccChhhheEeccccccCceeEEEe
Confidence 9887655333 344445565554
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-52 Score=392.25 Aligned_cols=368 Identities=22% Similarity=0.336 Sum_probs=300.2
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEE
Q 047837 34 QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIY 111 (882)
Q Consensus 34 ~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~ 111 (882)
+...+.||. +.|.|++|+|+|+.||+|+ +|.++++||+.|..++++.++|...|.|++|+|||+.||+|+ |+|+
T Consensus 107 CssS~~GH~--e~Vl~~~fsp~g~~l~tGs--GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 107 CSSSIAGHG--EAVLSVQFSPTGSRLVTGS--GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eccccCCCC--CcEEEEEecCCCceEEecC--CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 334678999 8999999999999999995 489999999999999999999999999999999999999999 9999
Q ss_pred EEEcCcceee-eeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccc
Q 047837 112 LWNWRSAMLV-MKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKES 190 (882)
Q Consensus 112 iWd~~~g~~~-~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (882)
+||.++|+++ ..+.+|. ..|++++|-|-
T Consensus 183 lwdpktg~~~g~~l~gH~--K~It~Lawep~------------------------------------------------- 211 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHK--KWITALAWEPL------------------------------------------------- 211 (480)
T ss_pred EecCCCCCcccccccCcc--cceeEEeeccc-------------------------------------------------
Confidence 9999999876 5577877 89999998762
Q ss_pred eEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeec
Q 047837 191 YFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDI 270 (882)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~ 270 (882)
...|..++||+++.||.|+|||+
T Consensus 212 ---------------------------------------------------------hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 212 ---------------------------------------------------------HLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred ---------------------------------------------------------ccCCCccceecccCCCCEEEEEc
Confidence 12355678999999999999998
Q ss_pred ccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeee
Q 047837 271 QSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVL 350 (882)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~ 350 (882)
..+.++.. +
T Consensus 235 ~~~~~~~~-----------------------------------------------------------------------l 243 (480)
T KOG0271|consen 235 KLGTCVRT-----------------------------------------------------------------------L 243 (480)
T ss_pred cCceEEEE-----------------------------------------------------------------------e
Confidence 86544321 2
Q ss_pred ecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeee
Q 047837 351 VSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAG 430 (882)
Q Consensus 351 ~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (882)
.+|..+|+|+.|. ...+|++++.|++|++|+...+.....
T Consensus 244 ----------------sgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~---------------------- 283 (480)
T KOG0271|consen 244 ----------------SGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRE---------------------- 283 (480)
T ss_pred ----------------ccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHh----------------------
Confidence 3467778888886 566999999999999999988765432
Q ss_pred eeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC-
Q 047837 431 IFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN- 509 (882)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~- 509 (882)
+.+|...|+.++.+-+- .|-+|..|.+=+-....+.
T Consensus 284 -----------------------------lkGHahwvN~lalsTdy--------------~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 284 -----------------------------LKGHAHWVNHLALSTDY--------------VLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred -----------------------------hcccchheeeeeccchh--------------hhhccccccccccCCChHHH
Confidence 56888889888887664 2445544432111110000
Q ss_pred -ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC
Q 047837 510 -FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ 588 (882)
Q Consensus 510 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 588 (882)
.+.+..+ ....-..+..|++|+.|.++.+|+.......... ..+|..-|+.+.||||++++|+++.
T Consensus 321 ~~~Al~rY--------~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-----mtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 321 QKKALERY--------EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-----MTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred HHHHHHHH--------HHhhccCcceeEEecCCceEEEecccccccchhh-----hhchhhheeeEEECCCccEEEEeec
Confidence 0000000 0111124689999999999999998755443332 3345579999999999999999999
Q ss_pred CCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCE
Q 047837 589 DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKH 668 (882)
Q Consensus 589 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 668 (882)
|..|++||.++|+.+.+|. +|-..|+.++|+.|.++|++|+.|.++++||+++.++...+.||...|.++.|+|||+.
T Consensus 388 DkSVkLW~g~tGk~lasfR--GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFR--GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred ccceeeeeCCCcchhhhhh--hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEe
Q 047837 669 IVSVGGDGLQRVKE 682 (882)
Q Consensus 669 l~s~~~dg~i~vwd 682 (882)
+++++.|..+++|.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 99999999999994
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-48 Score=397.54 Aligned_cols=541 Identities=15% Similarity=0.250 Sum_probs=409.0
Q ss_pred CeEEE-eeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecccccee
Q 047837 14 SKCAY-VAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVE 92 (882)
Q Consensus 14 ~~~~~-~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~ 92 (882)
+++++ +++..|.+||+++++....+...+....|+|++-+||.-+||+|.. ||.|+||+..+...+.+|.||+..|+
T Consensus 34 Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYa--DGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 34 GRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYA--DGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEec--CceEEeeccCCCceeeeecccccceE
Confidence 44444 4788999999999965544433232258999999999999999987 99999999999999999999999999
Q ss_pred EEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccc
Q 047837 93 CIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLN 169 (882)
Q Consensus 93 ~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~ 169 (882)
+|.|...|.+||+|+ +.|.+||+-...-+.++.+|. ..|+.+-|..+.++|++++. ..|++||+++..+....+
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk--d~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv- 188 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK--DSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV- 188 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccceeeEEeecch--HHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe-
Confidence 999999999999999 999999999999999999987 89999999998899998886 689999999887722221
Q ss_pred cCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEE
Q 047837 170 KGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFAL 249 (882)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (882)
.|. ..+.++++
T Consensus 189 -------d~r--------------------------------------------------------------~Eiw~l~~ 199 (888)
T KOG0306|consen 189 -------DHR--------------------------------------------------------------GEIWALVL 199 (888)
T ss_pred -------ccc--------------------------------------------------------------ceEEEEEE
Confidence 111 12256777
Q ss_pred ecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEe-
Q 047837 250 SASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVY- 328 (882)
Q Consensus 250 s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~- 328 (882)
.+ +.++++..|+.+++|++....-...- .................+..+.++..++++++++-
T Consensus 200 ~~--~~lvt~~~dse~~v~~L~~~~D~~~~--------------~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g 263 (888)
T KOG0306|consen 200 DE--KLLVTAGTDSELKVWELAFEDDEKET--------------NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG 263 (888)
T ss_pred ec--ceEEEEecCCceEEEEeecccccccc--------------cccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence 76 78999999999999998321100000 00000000000011122334456666666655553
Q ss_pred CCceEEEEEccccccc--------------------------------------------------------ceeeeeec
Q 047837 329 GDHSLYVWDIHDVNEA--------------------------------------------------------TRCCVLVS 352 (882)
Q Consensus 329 ~d~~i~iwd~~~~~~~--------------------------------------------------------~~~~~~~~ 352 (882)
.|..+.++.+...+.. ..+..+..
T Consensus 264 ~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~n 343 (888)
T KOG0306|consen 264 ADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLAN 343 (888)
T ss_pred chhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeec
Confidence 3666666665332200 00000111
Q ss_pred Ccceeeeeccc------------CCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeee
Q 047837 353 HSACIWDIKNL------------GCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEP 420 (882)
Q Consensus 353 ~~~~v~~i~~~------------~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 420 (882)
..-...++... -...+|...|.+++++ .+...+++|+ .+.+++|+..+.+++++..
T Consensus 344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS-~d~~~~~Sga-~~SikiWn~~t~kciRTi~---------- 411 (888)
T KOG0306|consen 344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS-SDSILLASGA-GESIKIWNRDTLKCIRTIT---------- 411 (888)
T ss_pred CceEEEEeccCCCCCccccccceeeeccchhheeEEEee-cCceeeeecC-CCcEEEEEccCcceeEEec----------
Confidence 11122222220 0126799999999998 6666666655 5799999999888776532
Q ss_pred cCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCc
Q 047837 421 MSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRT 500 (882)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 500 (882)
.+-+.+..|.|..+ ++++|...|.
T Consensus 412 -------------------------------------------~~y~l~~~Fvpgd~-------------~Iv~G~k~Ge 435 (888)
T KOG0306|consen 412 -------------------------------------------CGYILASKFVPGDR-------------YIVLGTKNGE 435 (888)
T ss_pred -------------------------------------------cccEEEEEecCCCc-------------eEEEeccCCc
Confidence 22466677777776 8999999999
Q ss_pred EEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcc----cee-e-eccceecccCCceEEE
Q 047837 501 IHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNS----AYK-I-SRRHQQLASQGTVYDM 574 (882)
Q Consensus 501 v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~-~-~~~~~~~~~~~~v~~~ 574 (882)
+.+||+.+. ..+.+.+.|.+.|.+++.+||++.+++++.|.+|++||..--.. ..+ + ......+.-...|.|+
T Consensus 436 l~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v 514 (888)
T KOG0306|consen 436 LQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV 514 (888)
T ss_pred eEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE
Confidence 999999987 77888889999999999999999999999999999999752111 001 1 1111233445789999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC
Q 047837 575 DIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG 654 (882)
Q Consensus 575 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 654 (882)
.+||||++|+++--|.++++|-+.+-+..-.+. +|.-+|.+|.+|||+++++||+.|++|+||-++-|.+...+.+|.
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd 592 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD 592 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecceeeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc
Confidence 999999999999999999999999999888887 999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc-CCCCCcccEEEecCCCeEEEecc
Q 047837 655 EVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF-AQPAALSPIIFCEEEDQKCRMDS 715 (882)
Q Consensus 655 ~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~ 715 (882)
..|.++.|-|+...+.++|.|+.|+-||-........+ .+...+..++.+|++..++....
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 99999999999999999999999999998887776655 55666777777777655554443
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-45 Score=376.12 Aligned_cols=525 Identities=16% Similarity=0.232 Sum_probs=399.2
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc-----
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL----- 78 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~----- 78 (882)
.+++.+|||+-.++.-..+...+.++.....++.+... .+|.|+.|||||+++|+|. ...+.||.....
T Consensus 59 ~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk---~~v~~i~fSPng~~fav~~---gn~lqiw~~P~~~~~~~ 132 (893)
T KOG0291|consen 59 TRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFK---RGVGAIKFSPNGKFFAVGC---GNLLQIWHAPGEIKNEF 132 (893)
T ss_pred EEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeec---CccceEEECCCCcEEEEEe---cceeEEEecCcchhccc
Confidence 45789999997777777788888898888888776443 6899999999999999986 347999987632
Q ss_pred ---eeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceee--eeeecCCcccceeEEEEccCCCEEEEECC-
Q 047837 79 ---AFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV--MKLKANSSCSAITSACFSSDAKFIVTAGK- 150 (882)
Q Consensus 79 ---~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~--~~~~~~~~~~~v~~l~fs~d~~~l~~~~~- 150 (882)
.+.+++.||-..|++|.|+.|.++|++++ .+++||++...+-+ ..+.+|. ..|.+..|..|..-+++.+.
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk--d~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK--DYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCC--cceEEEEeccCcceEEEEecC
Confidence 34566788999999999999999999999 99999999877764 4455555 99999999999988888876
Q ss_pred CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEc
Q 047837 151 KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVH 230 (882)
Q Consensus 151 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~ 230 (882)
|.+.+|..........+. .+...+ ..........+ .......|..+. ...+.
T Consensus 211 G~l~~W~~~~~P~~~~~~---~kd~eg-~~d~~~~~~~E---------------------ek~~~~~~~k~~---k~~ln 262 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKA---EKDEEG-SDDEEMDEDGE---------------------EKTHKIFWYKTK---KHYLN 262 (893)
T ss_pred ceEEEEEecCCCcccccc---cccccc-cccccccccch---------------------hhhcceEEEEEE---eeeec
Confidence 899999987332100000 000000 00000000000 000000111000 00000
Q ss_pred cCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCC
Q 047837 231 SGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTI 310 (882)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (882)
.. ...+.+.+|++....|++|-..|...+|++.....++.+..+ .
T Consensus 263 ~~--------~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis---------------------------~ 307 (893)
T KOG0291|consen 263 QN--------SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS---------------------------D 307 (893)
T ss_pred cc--------ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc---------------------------c
Confidence 00 033489999999999999999999999999998888776522 2
Q ss_pred CCcEEEeecCCCeEEEEeC--CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 311 PNAIACQFSTSEKLVVVYG--DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 311 ~~~~~~~~s~~~~ll~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
..+..++|+..|..++.+. =|.+.+|+.++..... . ..+|...+++++++ |||+++||
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl---K----------------QQgH~~~i~~l~YS-pDgq~iaT 367 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL---K----------------QQGHSDRITSLAYS-PDGQLIAT 367 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceee---e----------------ccccccceeeEEEC-CCCcEEEe
Confidence 3456789999998776555 4699999998654321 1 24577888888888 99999999
Q ss_pred eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 389 CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
|+.||.|++||..++-+. +.+..|+..|+
T Consensus 368 G~eDgKVKvWn~~SgfC~---------------------------------------------------vTFteHts~Vt 396 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCF---------------------------------------------------VTFTEHTSGVT 396 (893)
T ss_pred ccCCCcEEEEeccCceEE---------------------------------------------------EEeccCCCceE
Confidence 999999999999887653 34678999999
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC-CCCEEEEEEccCCCEEEEEeCCC-eEEE
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH-SAAVTAVKFTCNGRKILSCSADR-SLVV 546 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg-~i~v 546 (882)
.+.|+..++ .+++.+.||+|+.||+... ...+++... .....+++..|.|..++.|+.|. .|++
T Consensus 397 ~v~f~~~g~-------------~llssSLDGtVRAwDlkRY-rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 397 AVQFTARGN-------------VLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEEEecCC-------------EEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 999999998 9999999999999999875 677777643 34567899999999999999886 4999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECCCCC
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDPSGS 625 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~spdg~ 625 (882)
|++++++....+ .+|+++|.+++|+|++..|++++.|.+|++||+-.. ..+.++ .+...+..++|+|||+
T Consensus 463 WS~qTGqllDiL------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 463 WSVQTGQLLDIL------SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGK 533 (893)
T ss_pred EEeecCeeeehh------cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCC
Confidence 999987654333 345699999999999999999999999999998654 344455 4677899999999999
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEEEcc--------------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 626 YLVCSYSNKSICLYDFISGEMVAKAMG--------------------HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 626 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
-||++.-||.|.+||.+.+..+..+.+ .....+.+++++||+++++||....|++||+.+
T Consensus 534 elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 534 ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 999999999999999987766644432 124688999999999999999999999999998
Q ss_pred CCCCcccC
Q 047837 686 ILPPRNFA 693 (882)
Q Consensus 686 ~~~~~~~~ 693 (882)
+..++.+.
T Consensus 614 ~vllkkfq 621 (893)
T KOG0291|consen 614 GVLLKKFQ 621 (893)
T ss_pred hheeeeEE
Confidence 77776553
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-46 Score=380.19 Aligned_cols=523 Identities=17% Similarity=0.232 Sum_probs=403.3
Q ss_pred ccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEee
Q 047837 6 NIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK 85 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~ 85 (882)
+.-+||.--..+..+++.|+|||..+......+.||+ ..|+++.|+..|..||+|+. |+.|.|||+-...-+.+|+
T Consensus 71 l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK--~AVt~l~fd~~G~rlaSGsk--Dt~IIvwDlV~E~Gl~rL~ 146 (888)
T KOG0306|consen 71 LRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHK--AAVTTLKFDKIGTRLASGSK--DTDIIVWDLVGEEGLFRLR 146 (888)
T ss_pred eeccCCcceEEEEecCceEEeeccCCCceeeeecccc--cceEEEEEcccCceEeecCC--CccEEEEEeccceeeEEee
Confidence 3445665544666678999999999999989999999 99999999999999999965 8999999999888899999
Q ss_pred ccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEE-CCCcEEEEEcccCc
Q 047837 86 GHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTA-GKKHLKFWTIGSSA 162 (882)
Q Consensus 86 ~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~~~~i~iwd~~~~~ 162 (882)
||++.|+.+-|..+.++|++.+ +.|++||+++..+..+.-.|. +.++++++.+ +.++++ ++..+++|++....
T Consensus 147 GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r--~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 147 GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHR--GEIWALVLDE--KLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEeccc--ceEEEEEEec--ceEEEEecCCceEEEEeeccc
Confidence 9999999999999899999999 999999999999999999887 9999999998 555555 45789999983221
Q ss_pred cceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeece
Q 047837 163 TARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLK 242 (882)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~ 242 (882)
- .. ...+.......|.+..-..++
T Consensus 223 D--~~---------------------------------------------~~~~~~s~~~~G~~~rqsk~R--------- 246 (888)
T KOG0306|consen 223 D--EK---------------------------------------------ETNRYISTKLRGTFIRQSKGR--------- 246 (888)
T ss_pred c--cc---------------------------------------------cccccceeeccceeeeccCCc---------
Confidence 1 00 000011111122221111111
Q ss_pred eeeeEEEecCCCEEEEEecCCeEEeeecccceeccccccc-----------------------------------Cc---
Q 047837 243 VKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYS-----------------------------------EA--- 284 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~-----------------------------------~~--- 284 (882)
.-.++..++++++++-+.|..+.+|.+.+.+.+....-. ..
T Consensus 247 -~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks 325 (888)
T KOG0306|consen 247 -EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKS 325 (888)
T ss_pred -eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeE
Confidence 133556677888888888998888887543322111000 00
Q ss_pred --ccCCCCCc-----------cccchhhhc---------cccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEccccc
Q 047837 285 --KKCNGEND-----------TVSTAKATE---------LYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVN 342 (882)
Q Consensus 285 --~~~~~~~~-----------~~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~ 342 (882)
....++.. ......... -.....+|..++.+++++.+..+++.+..+.+++|+.++.+
T Consensus 326 ~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k 405 (888)
T KOG0306|consen 326 FDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK 405 (888)
T ss_pred EEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc
Confidence 00000000 000001100 01234567889999999999999999999999999998765
Q ss_pred ccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecC
Q 047837 343 EATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMS 422 (882)
Q Consensus 343 ~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 422 (882)
.... +. ...+.|..|. |.++++++|...|.+.++|+.+...+..
T Consensus 406 ciRT---i~------------------~~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Et-------------- 449 (888)
T KOG0306|consen 406 CIRT---IT------------------CGYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVET-------------- 449 (888)
T ss_pred eeEE---ec------------------cccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhh--------------
Confidence 4332 11 2244455565 7889999999999999999987655432
Q ss_pred CcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEE
Q 047837 423 TAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIH 502 (882)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~ 502 (882)
..+|++.|..++.+|++. .+++|+.|.+|+
T Consensus 450 -------------------------------------i~AHdgaIWsi~~~pD~~-------------g~vT~saDktVk 479 (888)
T KOG0306|consen 450 -------------------------------------IRAHDGAIWSISLSPDNK-------------GFVTGSADKTVK 479 (888)
T ss_pred -------------------------------------hhccccceeeeeecCCCC-------------ceEEecCCcEEE
Confidence 458999999999999998 899999999999
Q ss_pred EEEcCCCc----e--eEE-----EeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCce
Q 047837 503 LYDVKRNF----D--LIE-----SIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTV 571 (882)
Q Consensus 503 iwd~~~~~----~--~~~-----~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 571 (882)
+||..-.. . .+. ..-.-...|.++.+||||++||++--|.++++|-+++-+-.. ...+|.-+|
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl------sLYGHkLPV 553 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL------SLYGHKLPV 553 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee------eecccccce
Confidence 99975210 1 110 111245789999999999999999999999999988543222 335666799
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc
Q 047837 572 YDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAM 651 (882)
Q Consensus 572 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 651 (882)
.|+.++||++.+++|+.|++|++|-+.-|.+.+.+. +|...|.++.|-|+..++.+++.|+.|+-||-...+.++.+.
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence 999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 652 GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 652 ~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
+|...|++++.+|+|.+++|+|.|.+|++|+..+..
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 999999999999999999999999999999987643
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-44 Score=350.81 Aligned_cols=520 Identities=15% Similarity=0.172 Sum_probs=364.8
Q ss_pred ccccCCCCCeEEEee-ceEEEEEECCCCceE--EEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE
Q 047837 6 NIKKPDSSSKCAYVA-GCVLVVYDVDSSTQS--HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS 82 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~-~~~v~vwd~~~~~~~--~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~ 82 (882)
.-|+|.|- +++..- .+.|+|||....+.+ ..++--. ++|.-|+|+.|++.||+...|.+.-.+++-.++|.-+.
T Consensus 65 AkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG 141 (603)
T KOG0318|consen 65 AKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG 141 (603)
T ss_pred EEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeeecc--cccccceeCCCCcEEEEEecCccceeEEEEecCCCccc
Confidence 35788854 332222 368999998653332 2333334 88999999999998877765655555555555888899
Q ss_pred EeeccccceeEEEECCCCC-EEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEc
Q 047837 83 ELKGHLYGVECIAFSPDGE-HLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTI 158 (882)
Q Consensus 83 ~l~~h~~~V~~lafspdg~-~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~ 158 (882)
.+.||...|.+++|-|... ++++++ ++|.+|+-.--+--.++..|. .-|.++.|+|||.++++++. |.+.+||-
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs--kFV~~VRysPDG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS--KFVNCVRYSPDGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc--cceeeEEECCCCCeEEEecCCccEEEEcC
Confidence 9999999999999999654 688888 999999866556666666665 89999999999999999875 89999998
Q ss_pred ccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeE
Q 047837 159 GSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKS 238 (882)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~ 238 (882)
.+++.+ +.+.. ..
T Consensus 220 ktge~v--------g~l~~-----------------------------------------------------------~~ 232 (603)
T KOG0318|consen 220 KTGEKV--------GELED-----------------------------------------------------------SD 232 (603)
T ss_pred CCccEE--------EEecC-----------------------------------------------------------CC
Confidence 888761 11110 11
Q ss_pred eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 239 VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 239 ~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.|...+.+++|+||++.+++++.|.+++|||+.+.+++.++..... ....-+.|.|
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~------------------------v~dqqvG~lW 288 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST------------------------VEDQQVGCLW 288 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc------------------------hhceEEEEEE
Confidence 1233348999999999999999999999999999988877753221 1112335666
Q ss_pred cCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 319 s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
- .+.+++.+-+|.|.+++....... .++ .+|...|+++..+ +++.+|++|+.||.|.-|
T Consensus 289 q-kd~lItVSl~G~in~ln~~d~~~~---~~i----------------~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 289 Q-KDHLITVSLSGTINYLNPSDPSVL---KVI----------------SGHNKSITALTVS-PDGKTIYSGSYDGHINSW 347 (603)
T ss_pred e-CCeEEEEEcCcEEEEecccCCChh---hee----------------cccccceeEEEEc-CCCCEEEeeccCceEEEE
Confidence 6 788999999999999999876522 233 4567778888888 889999999999999999
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE------
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF------ 472 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~------ 472 (882)
+..++..-+..-..|.. .+..++.+..+.+... +-+..+..+..
T Consensus 348 ~~~~g~~~~~~g~~h~n-----------------------------qI~~~~~~~~~~~~t~-g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTN-----------------------------QIKGMAASESGELFTI-GWDDTLRVISLKDNGYT 397 (603)
T ss_pred ecCCccccccccccccc-----------------------------eEEEEeecCCCcEEEE-ecCCeEEEEecccCccc
Confidence 99987654332122211 1223333322222111 11111111111
Q ss_pred ----ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 473 ----SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 473 ----~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
.+-+..+ ....+..++.+++....++.+.+-|... +.... -.-...+++++|++..++.|+.|+.|++|.
T Consensus 398 ~~~~~~lg~QP-~~lav~~d~~~avv~~~~~iv~l~~~~~----~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 398 KSEVVKLGSQP-KGLAVLSDGGTAVVACISDIVLLQDQTK----VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYS 471 (603)
T ss_pred ccceeecCCCc-eeEEEcCCCCEEEEEecCcEEEEecCCc----ceeec-cccccceEEEcCCCCEEEEecccceEEEEE
Confidence 0001001 1112222222333333333222222221 11111 234567899999999999999999999999
Q ss_pred CccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEE
Q 047837 549 VVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLV 628 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 628 (882)
+...+.... .....|.++|+++++|||+.+||++...+++.+||+.+++.....- .-|...|.+++|+|+..++|
T Consensus 472 l~g~~l~ee----~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vA 546 (603)
T KOG0318|consen 472 LSGDELKEE----AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVA 546 (603)
T ss_pred ecCCcccce----eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEE
Confidence 986553322 2334556899999999999999999999999999999887733322 35899999999999999999
Q ss_pred EEeCCCcEEEEEccCCe-EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 629 CSYSNKSICLYDFISGE-MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 629 ~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+|+-|..|.||+++... .+....+|...|+.|.|- |...|++.+.|..|++|.+.
T Consensus 547 TGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 547 TGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 99999999999998753 344455699999999996 55689999999999999874
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-47 Score=356.26 Aligned_cols=350 Identities=22% Similarity=0.319 Sum_probs=276.1
Q ss_pred ccccCCCCCeEEEee-ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE-E
Q 047837 6 NIKKPDSSSKCAYVA-GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS-E 83 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~-~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~-~ 83 (882)
+.|+|+|. .++..+ +.++++||+.+..+.++..+|. ..|.|++|||||+.||+|+. ||+|++||.++|+++. .
T Consensus 121 ~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--~WVlcvawsPDgk~iASG~~--dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 121 VQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHK--NWVLCVAWSPDGKKIASGSK--DGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred EEecCCCc-eEEecCCCceEEeeccCCCCcceeecCCc--cEEEEEEECCCcchhhcccc--CCeEEEecCCCCCccccc
Confidence 68999987 555555 4699999999999999999999 89999999999999999977 8999999999998774 5
Q ss_pred eeccccceeEEEECC-----CCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEE
Q 047837 84 LKGHLYGVECIAFSP-----DGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFW 156 (882)
Q Consensus 84 l~~h~~~V~~lafsp-----dg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iw 156 (882)
|++|...|++|+|-| ..++||+++ |.|+|||+..++++..+.+|. .+|+|+.|--+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT--~~VTCvrwGG~--------------- 258 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT--ASVTCVRWGGE--------------- 258 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc--cceEEEEEcCC---------------
Confidence 999999999999976 688999999 999999999999999999998 89999887432
Q ss_pred EcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceee
Q 047837 157 TIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVT 236 (882)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~ 236 (882)
T Consensus 259 -------------------------------------------------------------------------------- 258 (480)
T KOG0271|consen 259 -------------------------------------------------------------------------------- 258 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEE
Q 047837 237 KSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIAC 316 (882)
Q Consensus 237 ~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (882)
.+|++|+.|++|++|+...|++.+.+. ||..+++. +
T Consensus 259 -----------------gliySgS~DrtIkvw~a~dG~~~r~lk--------GHahwvN~-------------------l 294 (480)
T KOG0271|consen 259 -----------------GLIYSGSQDRTIKVWRALDGKLCRELK--------GHAHWVNH-------------------L 294 (480)
T ss_pred -----------------ceEEecCCCceEEEEEccchhHHHhhc--------ccchheee-------------------e
Confidence 357888888888888888877665553 55444431 2
Q ss_pred eecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEE
Q 047837 317 QFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIR 396 (882)
Q Consensus 317 ~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~ 396 (882)
+.+.| ..|=+|..|.+=+
T Consensus 295 alsTd--------------------------------------------------------------y~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 295 ALSTD--------------------------------------------------------------YVLRTGAFDHTGR 312 (480)
T ss_pred eccch--------------------------------------------------------------hhhhccccccccc
Confidence 21111 1111121111100
Q ss_pred EEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCC
Q 047837 397 LWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSS 476 (882)
Q Consensus 397 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~ 476 (882)
-.. ...+.++..... + +
T Consensus 313 ~~~--~~se~~~~Al~r-------------------------------------------Y------~------------ 329 (480)
T KOG0271|consen 313 KPK--SFSEEQKKALER-------------------------------------------Y------E------------ 329 (480)
T ss_pred cCC--ChHHHHHHHHHH-------------------------------------------H------H------------
Confidence 000 000000000000 0 0
Q ss_pred CCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce
Q 047837 477 KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY 556 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 556 (882)
......+..|++|+.|.++.+|+.....+++..+.+|...|..+.||||++++|+++.|+.|++||.++++...
T Consensus 330 ------~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la 403 (480)
T KOG0271|consen 330 ------AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA 403 (480)
T ss_pred ------HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh
Confidence 00001112799999999999999888777888999999999999999999999999999999999999876544
Q ss_pred eeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcE
Q 047837 557 KISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSI 636 (882)
Q Consensus 557 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i 636 (882)
.+ +.| -+.|+.++|+.|.++|++|+.|.++++||+++.++...+. +|..+|.++.|+|||..+++|+.|+.+
T Consensus 404 sf-RGH-----v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp--Gh~DEVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 404 SF-RGH-----VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP--GHADEVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred hh-hhc-----cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC--CCCceEEEEEecCCCceeecCCCceEE
Confidence 33 333 4799999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred EEEE
Q 047837 637 CLYD 640 (882)
Q Consensus 637 ~iwd 640 (882)
++|.
T Consensus 476 ~lw~ 479 (480)
T KOG0271|consen 476 RLWR 479 (480)
T ss_pred Eeec
Confidence 9995
No 12
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=331.53 Aligned_cols=502 Identities=19% Similarity=0.280 Sum_probs=387.5
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC------CCeEEEEECCCc
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP------QPAVLVWDCANL 78 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~------d~~I~vwd~~t~ 78 (882)
.+-+-|- +.++|+..+.+++||.+...|++. .+|. ..|.|++++||.-.+|+|.... ...++|||..+.
T Consensus 70 Nly~lpt--gE~vyfvA~V~Vl~n~ee~~Qr~y-~GH~--ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L 144 (626)
T KOG2106|consen 70 NLYLLPT--GELVYFVAAVGVLYNWEERSQRHY-LGHN--DDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL 144 (626)
T ss_pred eeEEccC--ccEEEEeccEEEEEeehhhhcccc-cCCC--CceEEEeecCCceeeccCcccccCCCcCCCeeeecccccc
Confidence 3444555 469999999999999998888666 5998 8999999999999999886532 357999999999
Q ss_pred eeeEEeeccccceeEEEECC--CCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEcc-CCCEEEEECCC
Q 047837 79 AFISELKGHLYGVECIAFSP--DGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS-DAKFIVTAGKK 151 (882)
Q Consensus 79 ~~~~~l~~h~~~V~~lafsp--dg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~~~~ 151 (882)
..++.|......|.|++||+ .|.+|+..+ ..+.||||..+......+... ..|..+.|.| |.++++++|.+
T Consensus 145 ~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn--e~v~~a~FHPtd~nliit~Gk~ 222 (626)
T KOG2106|consen 145 STLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN--EVVFLATFHPTDPNLIITCGKG 222 (626)
T ss_pred eeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc--ceEEEEEeccCCCcEEEEeCCc
Confidence 99999988889999999998 577888887 779999999999888887765 8899999999 67789999999
Q ss_pred cEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEcc
Q 047837 152 HLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHS 231 (882)
Q Consensus 152 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~ 231 (882)
++.+|+++.+.+.+.. +.++.++
T Consensus 223 H~~Fw~~~~~~l~k~~-----~~fek~e---------------------------------------------------- 245 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQ-----GIFEKRE---------------------------------------------------- 245 (626)
T ss_pred eEEEEEccCCceEEEe-----ecccccc----------------------------------------------------
Confidence 9999999877662211 1111111
Q ss_pred CceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCC
Q 047837 232 GLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIP 311 (882)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (882)
.+.+.+++|.++|+ +++|..+|.|.||+..+.+...+. ..|.+
T Consensus 246 ---------kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~---------------------------~aH~g 288 (626)
T KOG2106|consen 246 ---------KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV---------------------------HAHDG 288 (626)
T ss_pred ---------ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe---------------------------eecCC
Confidence 13458999999998 889999999999998665443332 15667
Q ss_pred CcEEEeecCCCeEEEEeCCceEEEEEcccccccce----------eeeeecCcceeee------------ecccCCCCCC
Q 047837 312 NAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATR----------CCVLVSHSACIWD------------IKNLGCENMH 369 (882)
Q Consensus 312 ~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~----------~~~~~~~~~~v~~------------i~~~~~~~~h 369 (882)
.+.+++...+|++++++.|+.|..||-. .+..+. ..+..++.+-+-. -.|.....+|
T Consensus 289 gv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh 367 (626)
T KOG2106|consen 289 GVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH 367 (626)
T ss_pred ceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec
Confidence 7889999999999998889999999932 211111 1122222221100 0111122567
Q ss_pred CCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
......++.+ ++.++++|++.|+.+++|+ ..+.+..
T Consensus 368 ~delwgla~h-ps~~q~~T~gqdk~v~lW~--~~k~~wt----------------------------------------- 403 (626)
T KOG2106|consen 368 GDELWGLATH-PSKNQLLTCGQDKHVRLWN--DHKLEWT----------------------------------------- 403 (626)
T ss_pred ccceeeEEcC-CChhheeeccCcceEEEcc--CCceeEE-----------------------------------------
Confidence 7888888888 7888999999999999999 3333221
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
..-..++.++.|+|.+ .+|.|...|...+.|.++. ..+..-.. ..+++.++|+
T Consensus 404 -----------~~~~d~~~~~~fhpsg--------------~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ys 456 (626)
T KOG2106|consen 404 -----------KIIEDPAECADFHPSG--------------VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYS 456 (626)
T ss_pred -----------EEecCceeEeeccCcc--------------eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEc
Confidence 1234567788888887 4999999999999999874 55555555 8999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE---
Q 047837 530 CNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF--- 606 (882)
Q Consensus 530 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--- 606 (882)
|+|.+||.++.|+.|++|.+......+.....+. ..+|+.+.|++|+++|.+-+.|-.|..|.....+.....
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~----gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDv 532 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS----GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDV 532 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec----CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecce
Confidence 9999999999999999999987766655544332 279999999999999999999999999954332222111
Q ss_pred -----------E--eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC---eEEEEEccCCCCeEEEEECCCCCEEE
Q 047837 607 -----------K--QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG---EMVAKAMGHGEVITGVTFLPDCKHIV 670 (882)
Q Consensus 607 -----------~--~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~s~d~~~l~ 670 (882)
. ...+...+..++-+.+.+++|+|.+.|.|++|...-- ...+++.+|++.|++++|..+...|+
T Consensus 533 kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li 612 (626)
T KOG2106|consen 533 KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLI 612 (626)
T ss_pred eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEE
Confidence 1 1235566777888889999999999999999998643 34677889999999999999999999
Q ss_pred EEeCCCeEEEEeC
Q 047837 671 SVGGDGLQRVKEK 683 (882)
Q Consensus 671 s~~~dg~i~vwd~ 683 (882)
+.+.|..|..|++
T Consensus 613 ~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 613 STGKDTSIMQWRL 625 (626)
T ss_pred ecCCCceEEEEEe
Confidence 9999999999986
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-42 Score=329.87 Aligned_cols=241 Identities=19% Similarity=0.281 Sum_probs=217.6
Q ss_pred CCCCcceeeeccC-CCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 369 HDPSVSCVARGCT-GGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 369 h~~~v~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
|...|.++.|+|. ++..++||+.||++++|++.+...+..
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~--------------------------------------- 256 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD--------------------------------------- 256 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh---------------------------------------
Confidence 3444555555544 477899999999999999987665443
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
+.+|...|..++|+|+|+ +|++++.|.+-++||+.++ ..+....+|...|.+++
T Consensus 257 ------------l~gH~~RVs~VafHPsG~-------------~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 257 ------------LEGHLARVSRVAFHPSGK-------------FLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIA 310 (459)
T ss_pred ------------hhcchhhheeeeecCCCc-------------eeeecccccchhhcccccc-hhhHhhcccccccceeE
Confidence 568999999999999999 9999999999999999987 55666789999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
|.+||..+++|+.|..-+|||++++.....+.. |..+|.+++|+|+|..||+|+.|++++|||++..+.+.++.
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecc------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence 999999999999999999999998887665543 34799999999999999999999999999999999988887
Q ss_pred eccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 608 QAKDFGDPMKVTVDP-SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 608 ~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
+|.+-|+.+.|+| .|.+|++++.|++++||...++++++.+.||.+.|.++..++|+++++|++.|.++++|.
T Consensus 385 --AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 385 --AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999 789999999999999999999999999999999999999999999999999999999995
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=309.93 Aligned_cols=277 Identities=16% Similarity=0.242 Sum_probs=250.0
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+.+.+|..+.|+ .+++.|+||+.+|.+++|+......+
T Consensus 172 ~gd~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~---------------------------------------- 210 (459)
T KOG0272|consen 172 VGDTRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLL---------------------------------------- 210 (459)
T ss_pred ccCCCcceeeEee-cCCCeEEEeecCCceeEeecCCccee----------------------------------------
Confidence 4567888889998 89999999999999999999876543
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
..+.+|...|.++.|+|... +.-+|+|+.||++++|++.+. .++..+.+|...|..+
T Consensus 211 -----------~~l~gH~~~v~~~~fhP~~~-----------~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH~~RVs~V 267 (459)
T KOG0272|consen 211 -----------QTLRGHTSRVGAAVFHPVDS-----------DLNLATASADGTVKLWKLSQE-TPLQDLEGHLARVSRV 267 (459)
T ss_pred -----------EEEeccccceeeEEEccCCC-----------ccceeeeccCCceeeeccCCC-cchhhhhcchhhheee
Confidence 34779999999999999831 126999999999999999876 7889999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
+|+|+|++|++++.|.+-++||+.++.... .+.+|...|.+++|.|||.++++|+.|..-+|||+++|+++..+
T Consensus 268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 268 AFHPSGKFLGTASFDSTWRLWDLETKSELL------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred eecCCCceeeecccccchhhcccccchhhH------hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence 999999999999999999999999765443 33466789999999999999999999999999999999999999
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP-DCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~i~vwd~~~ 685 (882)
. +|..+|..++|+|+|..||+|+.|++++|||++..+.+..+.+|..-|+.++|+| .|.+|+|++.|++++||...+
T Consensus 342 ~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 342 A--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred c--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 8 8999999999999999999999999999999999999999999999999999998 789999999999999999999
Q ss_pred CCCCccc-CCCCCcccEEEecCCCeEEEecc
Q 047837 686 ILPPRNF-AQPAALSPIIFCEEEDQKCRMDS 715 (882)
Q Consensus 686 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~ 715 (882)
+.+.+.+ ++...+..+.+++++..++...-
T Consensus 420 ~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 420 WSPLKSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred cccchhhcCCccceEEEEeccCCceEEEecc
Confidence 9998887 56777888889998887766543
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=277.16 Aligned_cols=298 Identities=17% Similarity=0.259 Sum_probs=252.8
Q ss_pred CEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceE
Q 047837 254 KLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSL 333 (882)
Q Consensus 254 ~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i 333 (882)
-+|++++.|-+||+|...+|.+.++++. ....+..+...|+++.|++++...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh---------------------------~dsqVNrLeiTpdk~~LAaa~~qhv 63 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH---------------------------PDSQVNRLEITPDKKDLAAAGNQHV 63 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec---------------------------CccceeeEEEcCCcchhhhccCCee
Confidence 4799999999999999999999998862 2344668999999999999999999
Q ss_pred EEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCC
Q 047837 334 YVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGH 413 (882)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 413 (882)
++||+.+.... +...+.+| ...|+++.|. .+|+.++||+.||+++|||++.....+
T Consensus 64 RlyD~~S~np~-Pv~t~e~h----------------~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR------ 119 (311)
T KOG0315|consen 64 RLYDLNSNNPN-PVATFEGH----------------TKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQR------ 119 (311)
T ss_pred EEEEccCCCCC-ceeEEecc----------------CCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccch------
Confidence 99999887653 44455555 4555566665 799999999999999999998743321
Q ss_pred ccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEE
Q 047837 414 ESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLA 493 (882)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 493 (882)
.-.|..+|+++..+|+.. -|+
T Consensus 120 ----------------------------------------------~~~~~spVn~vvlhpnQt-------------eLi 140 (311)
T KOG0315|consen 120 ----------------------------------------------NYQHNSPVNTVVLHPNQT-------------ELI 140 (311)
T ss_pred ----------------------------------------------hccCCCCcceEEecCCcc-------------eEE
Confidence 124678899999999887 799
Q ss_pred EEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEE
Q 047837 494 SGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYD 573 (882)
Q Consensus 494 ~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 573 (882)
+|..+|.|++||+.........+..-...|.++...|||.+|+.+...|..++|++-.......+...++...|.+.+..
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 99999999999999863333334455678999999999999999999999999999887766777777888889999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc
Q 047837 574 MDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG 652 (882)
Q Consensus 574 ~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 652 (882)
+.+|||+++||+++.|.+++||+.++- +.-..+. +|...+..++||.||+||++|+.|+.+++||+..++.+..+.+
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 999999999999999999999999987 4444454 8999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEC
Q 047837 653 HGEVITGVTFL 663 (882)
Q Consensus 653 h~~~v~~l~~s 663 (882)
|.....+++..
T Consensus 299 h~K~~vc~~ln 309 (311)
T KOG0315|consen 299 HHKAAVCVALN 309 (311)
T ss_pred cccccEEEEee
Confidence 98888887763
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=308.63 Aligned_cols=532 Identities=17% Similarity=0.247 Sum_probs=370.8
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEee-------------------------------
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGE------------------------------- 63 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~------------------------------- 63 (882)
+++.+.|++..+||.+.-..++.-..+ +..|+|++-..+--|.|.|.
T Consensus 49 ~vtt~vgksfqvYd~~kl~ll~vs~~l--p~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe~ 126 (910)
T KOG1539|consen 49 YVTTCVGKSFQVYDVNKLNLLFVSKPL--PDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHGAKVHLLLPFGEH 126 (910)
T ss_pred EEEEecCceEEEEeccceEEEEecCCC--CCceEEEEecCceEEEecCcEEEEEEccceEEEEeccccceEEEEeeecce
Confidence 345556999999999876665553334 48899998776655555432
Q ss_pred ---cCCCCeEEEEECCCc-ee----eEEeeccccceeEEEECCCC--CEEEEEc--CEEEEEEcCcceeeeeeecCCccc
Q 047837 64 ---SGPQPAVLVWDCANL-AF----ISELKGHLYGVECIAFSPDG--EHLVTVG--GYIYLWNWRSAMLVMKLKANSSCS 131 (882)
Q Consensus 64 ---~~~d~~I~vwd~~t~-~~----~~~l~~h~~~V~~lafspdg--~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~ 131 (882)
.+.++.+.||+..++ +. +..++...+.|++| ++|+- ..++.|+ |.+.|||+.+++.+.++.... .
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~--s 203 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF--S 203 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc--c
Confidence 022556777777663 11 11122222225554 34431 1234444 999999999999999999887 8
Q ss_pred ceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccc
Q 047837 132 AITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQ 210 (882)
Q Consensus 132 ~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (882)
.|+++.=+|--..++.+.. |+|.++++..++.. .
T Consensus 204 ~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil--~------------------------------------------- 238 (910)
T KOG1539|consen 204 RITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL--M------------------------------------------- 238 (910)
T ss_pred ceeEeccCCcceEEEEeccCceEEEEEcccCcEE--E-------------------------------------------
Confidence 9999999998888888865 99999999876651 1
Q ss_pred cCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCC-EEEEEecCCeEEeeecccceecccccccCcccCCC
Q 047837 211 AGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSK-LIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNG 289 (882)
Q Consensus 211 ~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 289 (882)
.... +...|..++|.-||. .+++|+..|.+-+||++..+.+..+.
T Consensus 239 --------sFk~-----------------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~--------- 284 (910)
T KOG1539|consen 239 --------SFKQ-----------------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR--------- 284 (910)
T ss_pred --------EEEc-----------------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee---------
Confidence 1111 112348899999987 56677777999999999877665543
Q ss_pred CCccccchhhhccccccCCCCCCcEEEeecCCCeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCC
Q 047837 290 ENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENM 368 (882)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 368 (882)
..+.+.+....|.+...+++ ++.|+.+++|=.+++.-..+. +....+
T Consensus 285 -----------------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~---------------LR~R~G 332 (910)
T KOG1539|consen 285 -----------------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL---------------LRSRGG 332 (910)
T ss_pred -----------------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh---------------eeeccC
Confidence 12344555678888887555 556999999877654432222 122356
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCcc-----ceee---ecCCcceEeeeee----ee--
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHES-----LNIE---PMSTAHLVSAGIF----ER-- 434 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~----~~-- 434 (882)
|..+..|++|....+..+.+++.|++++.+++.....-++....+.. .... ....+.++....- ..
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 88888888888778999999999999999987643322221110000 0000 0000111111000 01
Q ss_pred eeeeeeccccCeEEEEEcCC--CCEEEee----eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC
Q 047837 435 NTMETSVSTQGYRSMAVSSR--GSTLLLD----AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR 508 (882)
Q Consensus 435 ~~~~~~~~~~~~~~~~~s~~--~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~ 508 (882)
+...........+.+.+... |+...-. ..+..+++++.++-|+ +.+.|+..|.|.+|++++
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-------------F~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-------------FVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-------------eEEEeccCCeEEEEEccc
Confidence 11111222222333333322 2221111 1335667777777666 999999999999999998
Q ss_pred CceeEEEe---ecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEE
Q 047837 509 NFDLIESI---DDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVIT 585 (882)
Q Consensus 509 ~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 585 (882)
+ .....+ +.|..+|+.++...-++.+++++.+|.+++||.........+.. ...+.++..+.....+++
T Consensus 480 G-i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-------~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 480 G-IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-------GSSITGIVYHRVSDLLAI 551 (910)
T ss_pred C-eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-------CCCcceeeeeehhhhhhh
Confidence 7 455555 57999999999988888999999999999999986553322222 247888889998899999
Q ss_pred EeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCC
Q 047837 586 VGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD 665 (882)
Q Consensus 586 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d 665 (882)
+..|-.|+++|+.+.+.++.|. +|.+.|++++|||||++|++++.|++|++||+.++.++-.+. -..+.++|.|+|+
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPn 628 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPN 628 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCC
Confidence 9999999999999999999998 999999999999999999999999999999999999988775 5688999999999
Q ss_pred CCEEEEEeCC-CeEEEEeCCCC
Q 047837 666 CKHIVSVGGD-GLQRVKEKYGI 686 (882)
Q Consensus 666 ~~~l~s~~~d-g~i~vwd~~~~ 686 (882)
|.+|||+..| .-|++|--...
T Consensus 629 gD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred CCEEEEEEecCceEEEEEchhH
Confidence 9999999988 67999987543
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=274.96 Aligned_cols=290 Identities=18% Similarity=0.271 Sum_probs=246.1
Q ss_pred eeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcE
Q 047837 235 VTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAI 314 (882)
Q Consensus 235 ~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (882)
..-+.|...|.++.|++|.++|++++.||.+.|||.-+......++. ...-|+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---------------------------~s~WVM 101 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---------------------------PSSWVM 101 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---------------------------CceeEE
Confidence 34456777889999999999999999999999999988766655531 223467
Q ss_pred EEeecCCCeEEEEeC-CceEEEEEccccccc---ceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee
Q 047837 315 ACQFSTSEKLVVVYG-DHSLYVWDIHDVNEA---TRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS 390 (882)
Q Consensus 315 ~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~ 390 (882)
.|+|+|.|+++++++ |+...||++...... ...+.+.+|+ +-+.|+.|. +...|+|++
T Consensus 102 tCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt----------------gylScC~f~--dD~~ilT~S 163 (343)
T KOG0286|consen 102 TCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT----------------GYLSCCRFL--DDNHILTGS 163 (343)
T ss_pred EEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc----------------ceeEEEEEc--CCCceEecC
Confidence 899999999998877 999999999754221 2223455554 455555554 567899999
Q ss_pred CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEE
Q 047837 391 ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSL 470 (882)
Q Consensus 391 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~ 470 (882)
.|.+..+||+++++.+. .+.+|.+.|.++
T Consensus 164 GD~TCalWDie~g~~~~---------------------------------------------------~f~GH~gDV~sl 192 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQ---------------------------------------------------VFHGHTGDVMSL 192 (343)
T ss_pred CCceEEEEEcccceEEE---------------------------------------------------EecCCcccEEEE
Confidence 99999999999987653 366999999999
Q ss_pred EEec-CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 047837 471 SFSL-SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDV 549 (882)
Q Consensus 471 ~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 549 (882)
+++| +++ .+++|+-|+..++||++.+ ..++.|.+|...|.++.|.|+|.-+++|+.|++.++||+
T Consensus 193 sl~p~~~n-------------tFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 193 SLSPSDGN-------------TFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred ecCCCCCC-------------eEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 9999 555 8999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEE
Q 047837 550 VETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
+...+........ ....|++++||..|++|++|..|.++.+||.-.++.+..+. +|.+.|+++..+|||.-|++
T Consensus 259 RaD~~~a~ys~~~----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 259 RADQELAVYSHDS----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCLGVSPDGMAVAT 332 (343)
T ss_pred cCCcEEeeeccCc----ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--ccCCeeEEEEECCCCcEEEe
Confidence 9776665554222 23589999999999999999999999999999999999998 99999999999999999999
Q ss_pred EeCCCcEEEEE
Q 047837 630 SYSNKSICLYD 640 (882)
Q Consensus 630 ~~~dg~i~iwd 640 (882)
|+.|.+++||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 18
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.4e-35 Score=299.92 Aligned_cols=551 Identities=14% Similarity=0.186 Sum_probs=377.7
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCC---EEEEeecCCCCeEEEEECCCc-
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGR---YVAAGESGPQPAVLVWDCANL- 78 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~---~la~g~~~~d~~I~vwd~~t~- 78 (882)
|+...+.|. +.++|.++..|.+||..+......+.||. ++|+|+.+-|+.+ ++++|. .|+.|++|.+...
T Consensus 17 ~~v~sw~~~--~~vafGa~~~Iav~dp~k~~i~t~l~GH~--a~VnC~~~l~~s~~~a~~vsG~--sD~~v~lW~l~~~~ 90 (764)
T KOG1063|consen 17 PKVSSWGPG--GLVAFGAGPAIAVADPEKILIVTTLDGHV--ARVNCVHWLPTSEIVAEMVSGD--SDGRVILWKLRDEY 90 (764)
T ss_pred ccccccccc--ceEEecCCceEEEeCcccceeEEeccCCc--cceEEEEEcccccccceEEEcc--CCCcEEEEEEeehh
Confidence 445555455 46999999999999999887778899999 9999999999888 889994 4999999999843
Q ss_pred -eeeEEeeccccceeEEEECCCCCEEEE-Ec-CEEEEEEcCcce--eeeeeecCCcccceeEEEEcc-CCCEEEEECC--
Q 047837 79 -AFISELKGHLYGVECIAFSPDGEHLVT-VG-GYIYLWNWRSAM--LVMKLKANSSCSAITSACFSS-DAKFIVTAGK-- 150 (882)
Q Consensus 79 -~~~~~l~~h~~~V~~lafspdg~~Las-~~-~~i~iWd~~~g~--~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~~~-- 150 (882)
..+.++.+|...+ ++++..-....+ +. +.+.+||.+..+ ++..+.......-..++++.+ .+.+|.++|.
T Consensus 91 ~~~i~~~~g~~~~~--~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~ 168 (764)
T KOG1063|consen 91 LIKIYTIQGHCKEC--VCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSK 168 (764)
T ss_pred eEEEEeecCcceeE--EEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcc
Confidence 4455677766554 444433333333 23 999999996555 444444333223345677777 4455554443
Q ss_pred CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEc
Q 047837 151 KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVH 230 (882)
Q Consensus 151 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~ 230 (882)
..|.++.-...+. .....+.+|..-+
T Consensus 169 ~~v~~~s~~~d~f------~~v~el~GH~DWI------------------------------------------------ 194 (764)
T KOG1063|consen 169 FVVDLYSSSADSF------ARVAELEGHTDWI------------------------------------------------ 194 (764)
T ss_pred eEEEEeccCCcce------eEEEEeeccchhh------------------------------------------------
Confidence 3466655443322 1223344444433
Q ss_pred cCceeeeEeeceeeeeEEEecCC---CEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccch--hhh---cc
Q 047837 231 SGLSVTKSVDLKVKNGFALSASS---KLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTA--KAT---EL 302 (882)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~s~d~---~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~ 302 (882)
.+++|...+ -+|++++.|..||||.+.-+................. ..+... .+. ..
T Consensus 195 --------------rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 195 --------------RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISF 259 (764)
T ss_pred --------------hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEeh
Confidence 667776544 3899999999999998764432221110000000000 000000 000 00
Q ss_pred ccccCCCCCCcEEEeecCCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccC
Q 047837 303 YFKLTPTIPNAIACQFSTSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCT 381 (882)
Q Consensus 303 ~~~~~~~~~~~~~~~~s~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~ 381 (882)
...+.+|..-+.++.|.|.+ .+|+++.|.++.+|..++..-.-....-.|. ..+.........|+ +
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe------------~gg~a~GF~g~lw~-~ 326 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE------------VGGSAGGFWGGLWS-P 326 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec------------ccccccceeeEEEc-C
Confidence 12234677778899999999 6999999999999998765332222111111 11234556667777 7
Q ss_pred CCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEee
Q 047837 382 GGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLD 461 (882)
Q Consensus 382 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 461 (882)
+++.+++-+.-|..++|....... .. ....+.
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~~~-w~-----------------------------------------------~~~~iS 358 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDKTF-WT-----------------------------------------------QEPVIS 358 (764)
T ss_pred CCCEEEEecccCcEEEEeccCccc-ee-----------------------------------------------eccccc
Confidence 889999999999999998322111 00 012356
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC---CceeEEEeecCCCCEEEEEEccCCCEEEEE
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR---NFDLIESIDDHSAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 538 (882)
+|.+.|..++|+|.++ +|++.+.|.+-++|-.-. .+..+..-+-|...+++++|-+....+++|
T Consensus 359 GH~~~V~dv~W~psGe-------------flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGE-------------FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cccccceeeeecCCCC-------------EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 8999999999999999 999999999999986542 123344556688999999999867788899
Q ss_pred eCCCeEEEEeCccC--------------------------------ccc--------------ee---------------
Q 047837 539 SADRSLVVRDVVET--------------------------------NSA--------------YK--------------- 557 (882)
Q Consensus 539 ~~dg~i~vwd~~~~--------------------------------~~~--------------~~--------------- 557 (882)
...+.+++|+.... +.. .+
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 99999999986420 000 00
Q ss_pred ---------eeccceecccCCceEEEEEecCCCEEEEEeCCC-----cEEEEEccCCceEEEEEeccCCCCcEEEEECCC
Q 047837 558 ---------ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK-----KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPS 623 (882)
Q Consensus 558 ---------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spd 623 (882)
....++..+|...|++++.+|+++++|+++... .|++|+..+...++.+. +|.-.|+.++||||
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~--~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE--GHSLTVTRLAFSPD 583 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec--ccceEEEEEEECCC
Confidence 001112237888999999999999999998654 69999999999888887 89999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCeE----EEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--CCC---cccCC
Q 047837 624 GSYLVCSYSNKSICLYDFISGEM----VAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI--LPP---RNFAQ 694 (882)
Q Consensus 624 g~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~--~~~---~~~~~ 694 (882)
|+||++.+.|.++.+|....... ....+.|+.-|.+..|+||+++++|+|.|..|++|...+. ... .....
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 99999999999999999865421 3346789999999999999999999999999999999876 222 23345
Q ss_pred CCCcccEEEecC
Q 047837 695 PAALSPIIFCEE 706 (882)
Q Consensus 695 ~~~~~~~~~s~~ 706 (882)
..+++.+.+.+-
T Consensus 664 ~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 664 SLAVTAVAYLPV 675 (764)
T ss_pred CCceeeEEeecc
Confidence 555555555444
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=270.79 Aligned_cols=291 Identities=18% Similarity=0.261 Sum_probs=249.4
Q ss_pred cCCCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc
Q 047837 306 LTPTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV 384 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~ 384 (882)
+.+|...+.++.|++|.+ +++++.||.+.|||.-+...... + .....-|..++|+ |.++
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha---i----------------pl~s~WVMtCA~s-PSg~ 110 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA---I----------------PLPSSWVMTCAYS-PSGN 110 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE---E----------------ecCceeEEEEEEC-CCCC
Confidence 335566677999999987 55667799999999876543221 1 1235667888898 8999
Q ss_pred EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc
Q 047837 385 SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD 464 (882)
Q Consensus 385 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 464 (882)
++|.|+.|....||++.+....... .....+.+|.
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~---------------------------------------------~v~r~l~gHt 145 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNV---------------------------------------------RVSRELAGHT 145 (343)
T ss_pred eEEecCcCceeEEEecccccccccc---------------------------------------------eeeeeecCcc
Confidence 9999999999999999854211000 0012367999
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCe
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRS 543 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~ 543 (882)
+-+.+..|-+++. |+|++.|.+..+||++++ +.+..+.+|.+.|.++.++| +++.+++|+-|+.
T Consensus 146 gylScC~f~dD~~--------------ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 146 GYLSCCRFLDDNH--------------ILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred ceeEEEEEcCCCc--------------eEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCeEEecccccc
Confidence 9999999999775 999999999999999998 88899999999999999999 9999999999999
Q ss_pred EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCC
Q 047837 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPS 623 (882)
Q Consensus 544 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spd 623 (882)
.++||++.+. ..+.+.. |+..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......+|++++||..
T Consensus 211 aklWD~R~~~-c~qtF~g-----hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 211 AKLWDVRSGQ-CVQTFEG-----HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred eeeeeccCcc-eeEeecc-----cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 9999999774 3344443 447999999999999999999999999999999999999986666789999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 624 GSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 624 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
|++|.+|..|.++.+||.-.++.+..+.||...|.+|..+|||.-|+|++.|..+|||.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999999999999994
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-35 Score=288.96 Aligned_cols=334 Identities=18% Similarity=0.277 Sum_probs=271.1
Q ss_pred eceeeeeEEEecCCC-EEEEEecCCeEEeeeccc--ceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEE
Q 047837 240 DLKVKNGFALSASSK-LIACACSNGAVHLFDIQS--LKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIAC 316 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~-~l~~~~~dg~I~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (882)
|...|.+++|+|-.. .+++|+.|-..|+|++.. ......+.+....... ....+...+++++
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~---------------~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREG---------------GKSVPSNKDVTSL 241 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhh---------------cccCCccCCcceE
Confidence 556678999999877 899999999999999874 1222222211111111 1233566789999
Q ss_pred eecCCCeEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcE
Q 047837 317 QFSTSEKLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTI 395 (882)
Q Consensus 317 ~~s~~~~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i 395 (882)
+|+.+|.+|+. ..||.+++|+...... ..+ ..|.++|.++.|+ .+|.+|++++.|+++
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l~----~tl----------------~~HkgPI~slKWn-k~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNLI----STL----------------GQHKGPIFSLKWN-KKGTYILSGGVDGTT 300 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchhh----hhh----------------hccCCceEEEEEc-CCCCEEEeccCCccE
Confidence 99999986665 5599999999875422 223 3366667777777 899999999999999
Q ss_pred EEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecC
Q 047837 396 RLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLS 475 (882)
Q Consensus 396 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~ 475 (882)
.+||..++...+. +.-|..+-..+.|..+
T Consensus 301 ilwd~~~g~~~q~---------------------------------------------------f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQ---------------------------------------------------FEFHSAPALDVDWQSN 329 (524)
T ss_pred EEEeccCceEEEe---------------------------------------------------eeeccCCccceEEecC
Confidence 9999988765443 2234444455666665
Q ss_pred CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc
Q 047837 476 SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA 555 (882)
Q Consensus 476 ~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 555 (882)
.. +++.+.|+.|+++.+... .++.++.+|.+.|.++.|+|.|.+|++++.|++++||........
T Consensus 330 ~~--------------F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 330 DE--------------FATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred ce--------------EeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 54 999999999999999876 889999999999999999999999999999999999998754433
Q ss_pred eeeeccceecccCCceEEEEEecCC---------CEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCE
Q 047837 556 YKISRRHQQLASQGTVYDMDIDPTM---------EVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 556 ~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
+....|...|+.+.|+|+| ..+++++.|++|++||+..+.++.+|. .|..+|++++|+|+|+|
T Consensus 395 ------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 395 ------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM--KHQEPVYSVAFSPNGRY 466 (524)
T ss_pred ------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec--cCCCceEEEEecCCCcE
Confidence 3334556799999999965 468999999999999999999999998 89999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 627 LVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+|+|+.||.|.+|+.++++.++.+.+ .+.|..|+|+.+|.+|..+-.|+.+++-|++
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999999999985 5679999999999999999999999998874
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=268.45 Aligned_cols=284 Identities=23% Similarity=0.313 Sum_probs=230.1
Q ss_pred CCCCCcEEEeecCCC--eEEEEeCCceEEEEEcccccc--cceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 308 PTIPNAIACQFSTSE--KLVVVYGDHSLYVWDIHDVNE--ATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~--~ll~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
++...+..++..+.+ .++.++.|.++.+|++..... ....+.+ .+|+..|..++.+ ++|
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~----------------~GHsH~v~dv~~s-~dg 75 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL----------------TGHSHFVSDVVLS-SDG 75 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee----------------eccceEecceEEc-cCC
Confidence 344445577777764 367778899999999965421 1112233 4466667777777 899
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
++.++++.|+++++||+.+++..+ .+.+|
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~---------------------------------------------------~f~GH 104 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTR---------------------------------------------------RFVGH 104 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEE---------------------------------------------------EEEec
Confidence 999999999999999999876543 36699
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec--CCCCEEEEEEccC--CCEEEEEe
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD--HSAAVTAVKFTCN--GRKILSCS 539 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s~~--~~~l~s~~ 539 (882)
...|.+++|+++.. .+++|+.|.+|++|+.... +..++.. +.+.|.++.|+|+ ..+|++++
T Consensus 105 ~~dVlsva~s~dn~-------------qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNR-------------QIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred CCceEEEEecCCCc-------------eeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 99999999999998 8999999999999998764 3333333 3789999999997 78999999
Q ss_pred CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEE
Q 047837 540 ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVT 619 (882)
Q Consensus 540 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 619 (882)
.|+++++||+++.+. .+...+|.+.++.+++||||..+++|+.||.+.+||++.++.+..+ .+...|.+++
T Consensus 170 ~DktvKvWnl~~~~l------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---~a~~~v~sl~ 240 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQL------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---EAFDIVNSLC 240 (315)
T ss_pred CCceEEEEccCCcch------hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec---cCCCeEeeEE
Confidence 999999999985432 2334567789999999999999999999999999999999998888 5889999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc----C-----CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 620 VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG----H-----GEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 620 ~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
|+|+...|+.+. +..|+|||++++.++..+.. . .-...+++|++||+.|+.+-.|+.|++|.+.
T Consensus 241 fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 241 FSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999987777765 44699999999988776542 1 2245678999999999999999999999874
No 22
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=293.21 Aligned_cols=576 Identities=16% Similarity=0.160 Sum_probs=378.2
Q ss_pred EEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeee
Q 047837 48 CCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMK 123 (882)
Q Consensus 48 ~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~ 123 (882)
..++.+|-..++|.-. ...|.+||....++-+.+..|..+++++|||++|+|+|+|. ..++||++..-..+..
T Consensus 41 ~gLa~~p~Sgl~aYpA---GCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAE 117 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAYPA---GCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAE 117 (1080)
T ss_pred Ccccccccccceeecc---CcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhh
Confidence 4566677666665531 45899999999888888888999999999999999999987 6799999999989999
Q ss_pred eecCCcccceeEEEEccCCCEEEEECCC---cEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeeccc
Q 047837 124 LKANSSCSAITSACFSSDAKFIVTAGKK---HLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATW 200 (882)
Q Consensus 124 ~~~~~~~~~v~~l~fs~d~~~l~~~~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 200 (882)
+..|. ..|++++|+|.++++++.|.. .|.+||+..... +..+.+
T Consensus 118 fvdHK--Y~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~-------------~asnki------------------ 164 (1080)
T KOG1408|consen 118 FVDHK--YNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS-------------GASNKI------------------ 164 (1080)
T ss_pred hhhcc--ccceeeeecCCCcEEEeeccccceEEEhhhhhhccc-------------cccccc------------------
Confidence 98887 899999999999999998863 477787653321 000000
Q ss_pred ccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceec-ccc
Q 047837 201 TDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHA-GTL 279 (882)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~-~~~ 279 (882)
-..+.+++|+.||.++++.+ +..|++|.++.++.. ..+
T Consensus 165 ----------------------------------------ss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~Kykdpi 203 (1080)
T KOG1408|consen 165 ----------------------------------------SSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPI 203 (1080)
T ss_pred ----------------------------------------ceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCc
Confidence 12347899999999999877 779999999876522 122
Q ss_pred cccCcccCCCCCcccc--chhhhc------------------------cccccCCCCCCcEEEeecCCCe-EEEEeCCce
Q 047837 280 HYSEAKKCNGENDTVS--TAKATE------------------------LYFKLTPTIPNAIACQFSTSEK-LVVVYGDHS 332 (882)
Q Consensus 280 ~~~~~~~~~~~~~~~~--~~~~~~------------------------~~~~~~~~~~~~~~~~~s~~~~-ll~~~~d~~ 332 (882)
++....-+.|...... ...... +.....-....+.|++. ..+ +++++.+|.
T Consensus 204 Pl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~ 281 (1080)
T KOG1408|consen 204 PLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGM 281 (1080)
T ss_pred cccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEeeccce
Confidence 2222111111111000 000000 00000000011111111 234 455667999
Q ss_pred EEEEEcccccccceeeeeecCc-----ceeeeecc--cCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCce
Q 047837 333 LYVWDIHDVNEATRCCVLVSHS-----ACIWDIKN--LGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSE 405 (882)
Q Consensus 333 i~iwd~~~~~~~~~~~~~~~~~-----~~v~~i~~--~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~ 405 (882)
|++|+..+......+ .+.|. ..+..... .....+.-+..-++.|. +....|.....|..+.+||++.-..
T Consensus 282 vrlFnp~tL~y~~Tl--pr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd-et~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 282 VRLFNPETLDYAGTL--PRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFD-ETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred eeecCcchhhhcccc--ccccccccchhhcccccccccccCcccCCceeEEEec-CCCceEEEEEcCceEEEEecccccc
Confidence 999998776543321 11121 11111110 01112223344566777 5677888888999999999987655
Q ss_pred eeecc--cCCc--cceeeecC-CcceEeeeeeeeeeeeeeccccCeEEEEEcC--CCCEE--------------------
Q 047837 406 LSKDV--LGHE--SLNIEPMS-TAHLVSAGIFERNTMETSVSTQGYRSMAVSS--RGSTL-------------------- 458 (882)
Q Consensus 406 ~~~~~--~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~-------------------- 458 (882)
+.+.. .-|. ...+...+ ..+--...-+....+...-..+.++.+.... ++..+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 43321 0010 00000000 0000000001111111122222333332211 11110
Q ss_pred ---------------EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCE
Q 047837 459 ---------------LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAV 523 (882)
Q Consensus 459 ---------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v 523 (882)
..-.....+.+++.+|+++ +||+|..-|+++||++.+- ..+..+..|...|
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-------------hLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEi 504 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-------------HLASGDRGGNLRVYDLQEL-EYTCFMEAHESEI 504 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcc-------------eecccCccCceEEEEehhh-hhhhheeccccee
Confidence 0011234567777777777 9999999999999999875 6778889999999
Q ss_pred EEEEEcc---CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC--CEEEEEeCCCcEEEEEcc
Q 047837 524 TAVKFTC---NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM--EVVITVGQDKKINSFSIA 598 (882)
Q Consensus 524 ~~~~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~iwd~~ 598 (882)
.++.|+. ..++||+++.|..|.+||+...-....... +|...|+++.|...| ..+++++.|+.|.+--.+
T Consensus 505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-----~HSssITsvKFa~~gln~~MiscGADksimFr~~q 579 (1080)
T KOG1408|consen 505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-----GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ 579 (1080)
T ss_pred EEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-----ccccceeEEEEeecCCceEEEeccCchhhheehhc
Confidence 9999986 357899999999999999985544444333 445899999999888 789999999877654333
Q ss_pred CCceEEEEEec---cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc---CCCCeEEEEECCCCCEEEEE
Q 047837 599 AGKLIRSFKQA---KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG---HGEVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 599 ~~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~d~~~l~s~ 672 (882)
.......+..+ -....++.|+..|..+++++++.|..|+|||+++|+..+.|++ |.+....+...|.|-||++.
T Consensus 580 k~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atS 659 (1080)
T KOG1408|consen 580 KASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATS 659 (1080)
T ss_pred cccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEe
Confidence 22222222211 2245688999999999999999999999999999999999986 66778889999999999999
Q ss_pred eCCCeEEEEeCCCCCCCcc-cCCCCCcccEEEecCCCeEEEecccccccccCc
Q 047837 673 GGDGLQRVKEKYGILPPRN-FAQPAALSPIIFCEEEDQKCRMDSVNMSFKKDL 724 (882)
Q Consensus 673 ~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 724 (882)
..|.++.++|...+.+... +++...+..+.|+++-.+++.+..+...+....
T Consensus 660 csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 9999999999988887755 578888999999999999999888877754443
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.3e-35 Score=276.03 Aligned_cols=336 Identities=17% Similarity=0.217 Sum_probs=266.9
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEE
Q 047837 35 SHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYL 112 (882)
Q Consensus 35 ~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~i 112 (882)
+..|..|+ ..|.+++.+|+.+++|+| ++|..-.||++.+|.....+.+|+..|+++.||.||.|||+|+ |.|.|
T Consensus 57 ~~tF~~H~--~svFavsl~P~~~l~aTG--GgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 57 LVTFDKHT--DSVFAVSLHPNNNLVATG--GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eeehhhcC--CceEEEEeCCCCceEEec--CCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 45677899 899999999999999999 5588999999999999999999999999999999999999999 99999
Q ss_pred EEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccce
Q 047837 113 WNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESY 191 (882)
Q Consensus 113 Wd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 191 (882)
|...+|.....+.... ..+.-+.|+|-+..|+.++. |.+.+|.+.++.. .+.+.+|..+.
T Consensus 133 ~~~stg~~~~~~~~e~--~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~--------~kv~~Gh~~~c--------- 193 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEV--EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL--------CKVMSGHNSPC--------- 193 (399)
T ss_pred EEcccCceEEEeeccc--CceEEEEecccccEEEeecCCCcEEEEECCCcce--------eeEecCCCCCc---------
Confidence 9999999999887554 88999999999999888876 8999999987543 23344555554
Q ss_pred EEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecc
Q 047837 192 FVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQ 271 (882)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~ 271 (882)
++=.|.|+|++++++..||+|++|++.
T Consensus 194 -----------------------------------------------------t~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 194 -----------------------------------------------------TCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred -----------------------------------------------------ccccccCCCceEEEEecCceEEEEecC
Confidence 566789999999999999999999999
Q ss_pred cceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEE-EeCCceEEEEEcccccccceeeee
Q 047837 272 SLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVV-VYGDHSLYVWDIHDVNEATRCCVL 350 (882)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~ 350 (882)
+++.+..+.... .....++.++..+.+++ +..++.+++-+..+++.... .
T Consensus 221 tg~p~~~~~~~e--------------------------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~---~ 271 (399)
T KOG0296|consen 221 TGQPLHKITQAE--------------------------GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC---N 271 (399)
T ss_pred CCceeEEecccc--------------------------cCcCCccccccccceeEeccCCccEEEEccccceEEEe---c
Confidence 998877664111 11122566777776544 45588888877766543221 1
Q ss_pred ecCcceeeeecccCCCCCCCCCcceeeecc--CCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEe
Q 047837 351 VSHSACIWDIKNLGCENMHDPSVSCVARGC--TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVS 428 (882)
Q Consensus 351 ~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~--~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (882)
.+ +.+. ....+...+.|+.+.+ ..-.+.|+|+.||+|.+||+...+...
T Consensus 272 n~-~~~~-------l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~--------------------- 322 (399)
T KOG0296|consen 272 NG-TVPE-------LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH--------------------- 322 (399)
T ss_pred CC-CCcc-------ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe---------------------
Confidence 11 0000 0122333444443331 455678999999999999998655321
Q ss_pred eeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC
Q 047837 429 AGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR 508 (882)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~ 508 (882)
.-.|...|..+.|-+ .. +|++++.+|.|+.||.++
T Consensus 323 -------------------------------~c~he~~V~~l~w~~-t~-------------~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 323 -------------------------------ICEHEDGVTKLKWLN-TD-------------YLLTACANGKVRQWDART 357 (399)
T ss_pred -------------------------------eccCCCceEEEEEcC-cc-------------hheeeccCceEEeeeccc
Confidence 225777899999998 44 799999999999999999
Q ss_pred CceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 509 NFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 509 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
+ ++..++.+|...|.+++++|+.+++++++.|++.+||++.
T Consensus 358 G-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 358 G-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred c-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8 8999999999999999999999999999999999999864
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.4e-35 Score=259.11 Aligned_cols=293 Identities=17% Similarity=0.324 Sum_probs=236.2
Q ss_pred CCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceee
Q 047837 100 GEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTL 177 (882)
Q Consensus 100 g~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 177 (882)
.-+||+++ .+|++|...+|.+..++.... ..|..|...||++.||+++...|++||+.++.. .....+.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np------~Pv~t~e~ 81 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPD--SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP------NPVATFEG 81 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCc--cceeeEEEcCCcchhhhccCCeeEEEEccCCCC------CceeEEec
Confidence 34788888 999999999999999999776 899999999999999999999999999987764 12233444
Q ss_pred cCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEE
Q 047837 178 HAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIA 257 (882)
Q Consensus 178 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 257 (882)
|.+.| .++.|..+|++++
T Consensus 82 h~kNV--------------------------------------------------------------taVgF~~dgrWMy 99 (311)
T KOG0315|consen 82 HTKNV--------------------------------------------------------------TAVGFQCDGRWMY 99 (311)
T ss_pred cCCce--------------------------------------------------------------EEEEEeecCeEEE
Confidence 44433 8899999999999
Q ss_pred EEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEE
Q 047837 258 CACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWD 337 (882)
Q Consensus 258 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd 337 (882)
+|+.||+++|||+....+.+.+
T Consensus 100 TgseDgt~kIWdlR~~~~qR~~---------------------------------------------------------- 121 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSCQRNY---------------------------------------------------------- 121 (311)
T ss_pred ecCCCceEEEEeccCcccchhc----------------------------------------------------------
Confidence 9999999999999863322111
Q ss_pred cccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccce
Q 047837 338 IHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLN 417 (882)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 417 (882)
.|..+|+++..+ |+...|++|..+|.|++||+.......+.
T Consensus 122 ------------------------------~~~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~~~l-------- 162 (311)
T KOG0315|consen 122 ------------------------------QHNSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCTHEL-------- 162 (311)
T ss_pred ------------------------------cCCCCcceEEec-CCcceEEeecCCCcEEEEEccCCcccccc--------
Confidence 145677777777 67778999999999999999876543321
Q ss_pred eeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcC
Q 047837 418 IEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGR 497 (882)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 497 (882)
+......|.++...|++. +++.+..
T Consensus 163 ------------------------------------------iPe~~~~i~sl~v~~dgs-------------ml~a~nn 187 (311)
T KOG0315|consen 163 ------------------------------------------IPEDDTSIQSLTVMPDGS-------------MLAAANN 187 (311)
T ss_pred ------------------------------------------CCCCCcceeeEEEcCCCc-------------EEEEecC
Confidence 112234566666677766 8999999
Q ss_pred CCcEEEEEcCCC-----ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceE
Q 047837 498 DRTIHLYDVKRN-----FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVY 572 (882)
Q Consensus 498 dg~v~iwd~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 572 (882)
.|..++|++-.. ..++..++.|..-+..+.+|||+++||+++.|.+++||+.+..-.. .....+|...+.
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl-----e~~l~gh~rWvW 262 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL-----ELVLTGHQRWVW 262 (311)
T ss_pred CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee-----EEEeecCCceEE
Confidence 999999998652 3556778899999999999999999999999999999999854111 122334557999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 573 DMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 573 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
+.+||.||+||++++.|+.+++||+..++.++.+. +|.....+++..
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~--gh~K~~vc~~ln 309 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ--GHHKAAVCVALN 309 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecC--CcccccEEEEee
Confidence 99999999999999999999999999999999998 888888887764
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=293.02 Aligned_cols=470 Identities=19% Similarity=0.274 Sum_probs=354.9
Q ss_pred cccCC--CCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEe
Q 047837 7 IKKPD--SSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISEL 84 (882)
Q Consensus 7 ~~~pd--~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l 84 (882)
.+||+ =+..++...++.+.+||+++++.++.+.++. ..|+++.-+|--..+|+|.. +|+|.|+++..++.+.+|
T Consensus 165 l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~--s~IT~ieqsPaLDVVaiG~~--~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 165 LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF--SRITAIEQSPALDVVAIGLE--NGTVIIFNLKFDKILMSF 240 (910)
T ss_pred EecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc--cceeEeccCCcceEEEEecc--CceEEEEEcccCcEEEEE
Confidence 35776 2334555778999999999999999999998 89999999999999999976 999999999999999999
Q ss_pred eccccceeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeee-cCCcccceeEEEEccCCCEEEEECC-CcEEEEEcc
Q 047837 85 KGHLYGVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLK-ANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIG 159 (882)
Q Consensus 85 ~~h~~~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~-~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~ 159 (882)
+...+.|++++|..||..+.+.+ |.+.+||++..+++..+. .|. +.|..+.|.|....+++++. +.+++|-.+
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~--~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY--GSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc--CCcccceecCCCceEeeccCCCceeEEEee
Confidence 95569999999999999776555 999999999998887776 554 89999999999999999875 778888766
Q ss_pred cCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
++... .+......+|..|.
T Consensus 319 ~~dg~----pR~LR~R~GHs~Pp--------------------------------------------------------- 337 (910)
T KOG1539|consen 319 SGDGV----PRLLRSRGGHSAPP--------------------------------------------------------- 337 (910)
T ss_pred CCCCc----chheeeccCCCCCc---------------------------------------------------------
Confidence 54431 11112223444443
Q ss_pred eceeeeeEEEe-cCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 240 DLKVKNGFALS-ASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 240 ~~~~~~~~~~s-~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.++.|. .+|..+.+++.|++.+.+++..-..-.++.....+. .+. .+. ......-..+.+..+++
T Consensus 338 -----~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~-~~k--k~~------~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 338 -----SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK-RAK--KVN------VFSTEKLKLPPIVEFAF 403 (910)
T ss_pred -----hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc-ccc--ccc------ccchhhhcCCcceeeec
Confidence 678887 678899999999999999875433222221100000 000 000 00011223455666776
Q ss_pred cCC-----CeEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC
Q 047837 319 STS-----EKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD 392 (882)
Q Consensus 319 s~~-----~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d 392 (882)
... .+++++.. +..++.|+......... ++... .+......+++++.+ ..|++.+.|...
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~--~L~~~-----------~~~~~~~~~~av~vs-~CGNF~~IG~S~ 469 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH--VLDPK-----------RFKKDDINATAVCVS-FCGNFVFIGYSK 469 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccE--EecCc-----------cccccCcceEEEEEe-ccCceEEEeccC
Confidence 654 24555544 78999999976543221 11100 011235678888888 899999999999
Q ss_pred CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE
Q 047837 393 GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF 472 (882)
Q Consensus 393 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~ 472 (882)
|.|-+|+++++-....+. .-..|.++|+.++.
T Consensus 470 G~Id~fNmQSGi~r~sf~------------------------------------------------~~~ah~~~V~gla~ 501 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHRKSFG------------------------------------------------DSPAHKGEVTGLAV 501 (910)
T ss_pred CeEEEEEcccCeeecccc------------------------------------------------cCccccCceeEEEe
Confidence 999999999875433210 12378999999999
Q ss_pred ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccC
Q 047837 473 SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVET 552 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~ 552 (882)
...++ .+++++.+|.+++||..+. .+...+. -...+..+.++.....++.+..|-.|.++|+.+.
T Consensus 502 D~~n~-------------~~vsa~~~Gilkfw~f~~k-~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 502 DGTNR-------------LLVSAGADGILKFWDFKKK-VLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred cCCCc-------------eEEEccCcceEEEEecCCc-ceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 98887 8999999999999999875 4554444 4567888889988889999999999999999865
Q ss_pred ccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 553 NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
+.... ..+|.+.|++++|||||++|++++.|++|++||+.++.++-.+. -..+++.+.|||+|.+||+...
T Consensus 567 kvvR~------f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~---vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 567 KVVRE------FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL---VDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred hhhHH------hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe---cCCcceeeEECCCCCEEEEEEe
Confidence 44332 23556899999999999999999999999999999999998885 5678999999999999999988
Q ss_pred C-CcEEEEEccC
Q 047837 633 N-KSICLYDFIS 643 (882)
Q Consensus 633 d-g~i~iwd~~~ 643 (882)
| .-|++|--.+
T Consensus 638 d~~gIylWsNks 649 (910)
T KOG1539|consen 638 DQNGIYLWSNKS 649 (910)
T ss_pred cCceEEEEEchh
Confidence 8 6799997544
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=262.54 Aligned_cols=283 Identities=17% Similarity=0.230 Sum_probs=229.6
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|+.++..+.+.+.++++++|.++.+|++.......
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--------------------------------------- 52 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--------------------------------------- 52 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc---------------------------------------
Confidence 44555566666655567899999999999999998642110
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
.-....+.+|...|..+..+++++ +.++++.|+++++||+.++ +..+.|.+|...|.++
T Consensus 53 -------G~~~r~~~GHsH~v~dv~~s~dg~-------------~alS~swD~~lrlWDl~~g-~~t~~f~GH~~dVlsv 111 (315)
T KOG0279|consen 53 -------GVPVRRLTGHSHFVSDVVLSSDGN-------------FALSASWDGTLRLWDLATG-ESTRRFVGHTKDVLSV 111 (315)
T ss_pred -------CceeeeeeccceEecceEEccCCc-------------eEEeccccceEEEEEecCC-cEEEEEEecCCceEEE
Confidence 001234678999999999999998 9999999999999999998 8889999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC--CCEEEEEeCCCcEEEEEccCCceEE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT--MEVVITVGQDKKINSFSIAAGKLIR 604 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~ 604 (882)
+|++|.+.+++|+.|.+|++|++.. ....++.... +.+.|.|+.|+|+ ..+|++++.|++|++||+++.+...
T Consensus 112 a~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~----~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 112 AFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDS----HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred EecCCCceeecCCCcceeeeeeecc-cEEEEEecCC----CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 9999999999999999999999983 3444443322 1478999999998 6799999999999999999999999
Q ss_pred EEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 605 SFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 605 ~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.+. +|.+.++.+++||||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||+.
T Consensus 187 ~~~--gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~ 262 (315)
T KOG0279|consen 187 TFI--GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLE 262 (315)
T ss_pred ccc--cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEecc
Confidence 988 999999999999999999999999999999999999988886 889999999999986666544 5569999999
Q ss_pred CCCCCcccCCCCC----------cccEEEecCCCeEEEeccccc
Q 047837 685 GILPPRNFAQPAA----------LSPIIFCEEEDQKCRMDSVNM 718 (882)
Q Consensus 685 ~~~~~~~~~~~~~----------~~~~~~s~~~~~~~~~~~~~~ 718 (882)
.......+..... ...++|+.++..+...+..+.
T Consensus 263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 8776665533211 123566666665555544433
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-34 Score=281.27 Aligned_cols=331 Identities=19% Similarity=0.300 Sum_probs=273.0
Q ss_pred ccCCCCCCcEEEeecCCCe--EEEEeCCceEEEEEcccccccc-eeeeeecCcceeeeecccCCCCCCCCCcceeeeccC
Q 047837 305 KLTPTIPNAIACQFSTSEK--LVVVYGDHSLYVWDIHDVNEAT-RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCT 381 (882)
Q Consensus 305 ~~~~~~~~~~~~~~s~~~~--ll~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~ 381 (882)
...++...+.+++|+|-.. |.+++.+-+.++|++....... ....++ |.- .........+..|++++|+ .
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-h~~-----~~~~~s~~~nkdVT~L~Wn-~ 245 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-HCI-----REGGKSVPSNKDVTSLDWN-N 245 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-hhh-----hhhcccCCccCCcceEEec-C
Confidence 3445777889999999865 4455669999999996411100 000111 100 0000112246889999999 8
Q ss_pred CCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEee
Q 047837 382 GGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLD 461 (882)
Q Consensus 382 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 461 (882)
+|..||+|+.||.+++|+..... ...+.
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l----------------------------------------------------~~tl~ 273 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNL----------------------------------------------------ISTLG 273 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchh----------------------------------------------------hhhhh
Confidence 99999999999999999987432 12366
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD 541 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 541 (882)
.|.++|.++.|+..+. +|++++.|+++.+||..++ .....+.-|..+-.++.|- +...+++++.|
T Consensus 274 ~HkgPI~slKWnk~G~-------------yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td 338 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGT-------------YILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQ-SNDEFATSSTD 338 (524)
T ss_pred ccCCceEEEEEcCCCC-------------EEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEe-cCceEeecCCC
Confidence 8999999999999998 9999999999999999887 7777888888887888886 44578999999
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
+.|+|+.+....+...+.. |.+.|.++.|.|.|.+|++++.|++++||..........+. .|...|..+.|+
T Consensus 339 ~~i~V~kv~~~~P~~t~~G------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~--~Hskei~t~~ws 410 (524)
T KOG0273|consen 339 GCIHVCKVGEDRPVKTFIG------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ--AHSKEIYTIKWS 410 (524)
T ss_pred ceEEEEEecCCCcceeeec------ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh--hhccceeeEeec
Confidence 9999999986665554433 45899999999999999999999999999999999988887 899999999999
Q ss_pred CCCC---------EEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 622 PSGS---------YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 622 pdg~---------~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
|+|. .+++++.|++|++||+..|.+++.|..|..+|.+|+|+|+|+||++|+.||.|.+|++......+.+
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 9654 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccEEEecCCCeEEEecccc
Q 047837 693 AQPAALSPIIFCEEEDQKCRMDSVN 717 (882)
Q Consensus 693 ~~~~~~~~~~~s~~~~~~~~~~~~~ 717 (882)
.....+..++|+..++.++.-....
T Consensus 491 ~~~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 491 QGTGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred cCCCeEEEEEEcCCCCEEEEEecCC
Confidence 9998899999999998776654443
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=285.42 Aligned_cols=481 Identities=15% Similarity=0.211 Sum_probs=303.0
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
.+++|||.....++....+.|.+||.+-+.+++.+..|. ++|..++|+|++-++++| |+|-.|+||+..+.+++.+
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~~qplFVSG--GDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHPTQPLFVSG--GDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC--CccceeeecCCCCeEEec--CCccEEEEEecccceehhh
Confidence 468999999988888899999999999999999999999 999999999999999999 6688999999999999999
Q ss_pred eeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEccc
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGS 160 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~ 160 (882)
|.||.+.|..+.|++.-.+++|++ .+|+||+|.+++++..+.+|. .-|.|..|+|...++++++- .+|++||+..
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn--HYVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN--HYVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc--eEEEeeccCCccceEEEecccceEEEEeecc
Confidence 999999999999999999999999 999999999999999999998 79999999999999999985 7899999975
Q ss_pred CccceeccccC--ccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeE
Q 047837 161 SATARTRLNKG--TESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKS 238 (882)
Q Consensus 161 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~ 238 (882)
-.. .....+ ...+.++.....+... .+..+ +..-.
T Consensus 167 LRk--k~~~pg~~e~~~~~~~~~~dLfg~----------------------------------~DaVV-------K~VLE 203 (1202)
T KOG0292|consen 167 LRK--KNKAPGSLEDQMRGQQGNSDLFGQ----------------------------------TDAVV-------KHVLE 203 (1202)
T ss_pred hhc--cCCCCCCchhhhhccccchhhcCC----------------------------------cCeee-------eeeec
Confidence 433 111111 0000000000000000 00000 00011
Q ss_pred eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 239 VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 239 ~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.|-+.|+-++|.|.-.++++|+.|..|++|.+...
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet--------------------------------------------- 238 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--------------------------------------------- 238 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccc---------------------------------------------
Confidence 12333456666666666666666666666665421
Q ss_pred cCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 319 s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
+.|.+++ ..+|.+.|+++.|+ |..+++++.+.|++|++|
T Consensus 239 ---------------KaWEvDt-------------------------crgH~nnVssvlfh-p~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 239 ---------------KAWEVDT-------------------------CRGHYNNVSSVLFH-PHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred ---------------cceeehh-------------------------hhcccCCcceEEec-CccceeEecCCCccEEEE
Confidence 1344432 24678888888888 788899999999999999
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCC
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKK 478 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (882)
|+...+.++.+... .+.+.+++..|...+ .-.+|++.+.-..+....+
T Consensus 278 Dm~kRt~v~tfrre------------------------------ndRFW~laahP~lNL-fAAgHDsGm~VFkleRErp- 325 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRE------------------------------NDRFWILAAHPELNL-FAAGHDSGMIVFKLERERP- 325 (1202)
T ss_pred ecccccceeeeecc------------------------------CCeEEEEEecCCcce-eeeecCCceEEEEEcccCc-
Confidence 99988776654333 244677777777664 3457777776665554433
Q ss_pred CccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecC---CCCEEEEEEccCCCEEEEE-e-CCCeEEEEeCccC
Q 047837 479 DDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDH---SAAVTAVKFTCNGRKILSC-S-ADRSLVVRDVVET 552 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h---~~~v~~~~~s~~~~~l~s~-~-~dg~i~vwd~~~~ 552 (882)
+..+..++ ++.. .|..|+-+|+.+.. ..+..+... ..++.++.++|....+..+ . ..+.-.++.+...
T Consensus 326 ---a~~v~~n~-LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 326 ---AYAVNGNG-LFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred ---eEEEcCCE-EEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 11111111 2222 27889999998742 223334432 3678899999965554444 3 3344455554422
Q ss_pred ccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 553 NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
.....-..... ...... ..|-...++.+.--.+..+.+=++. .+..+.+. .......|-+.-.|.+|+..
T Consensus 400 ~~~~~~~~~~~---k~tG~~-a~fvarNrfavl~k~~~~v~ik~l~-N~vtkkl~---~~~~~~~IF~ag~g~lll~~-- 469 (1202)
T KOG0292|consen 400 SDGVSDGKDVK---KGTGEG-ALFVARNRFAVLDKSNEQVVIKNLK-NKVTKKLL---LPESTDDIFYAGTGNLLLRS-- 469 (1202)
T ss_pred ccccCCchhhh---cCCCCc-eEEEEecceEEEEecCcceEEeccc-chhhhccc---CcccccceeeccCccEEEEc--
Confidence 11100000000 000111 1121112222222223334443433 12222221 11233344455555555443
Q ss_pred CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEE
Q 047837 633 NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHI 669 (882)
Q Consensus 633 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 669 (882)
...|.+||++..+.+..++ ...|..+.||+|..++
T Consensus 470 ~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~v 504 (1202)
T KOG0292|consen 470 PDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRV 504 (1202)
T ss_pred CCeEEEEEeecceEEEEEe--cCceeEEEEcCccchh
Confidence 2356667766666666553 3556666666665543
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-32 Score=272.15 Aligned_cols=461 Identities=16% Similarity=0.249 Sum_probs=327.8
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEe
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISEL 84 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l 84 (882)
++-+||--...++....+.|.|||.++..++..+.-.. -+|.+..|-+-.+++++|+. |..|+||+..|++.++.|
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfiaRknWiv~GsD--D~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIARKNWIVTGSD--DMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeeeccceEEEecC--CceEEEEecccceeeEEe
Confidence 57899999989999999999999999999999886666 78999999999999999965 899999999999999999
Q ss_pred eccccceeEEEECCCCCEEEEEc--CEEEEEEcCcc-eeeeeeecCCcccceeEEEEcc-CCCEEEEEC-CCcEEEEEcc
Q 047837 85 KGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSA-MLVMKLKANSSCSAITSACFSS-DAKFIVTAG-KKHLKFWTIG 159 (882)
Q Consensus 85 ~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g-~~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~~-~~~i~iwd~~ 159 (882)
..|.+-|.+++.+|...++++++ -+|++||++.+ .+.+++.+|. .-|.+++|+| |.+.+|+++ |++|++|.+.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~--HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg 171 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE--HYVMQVAFNPKDPNTFASASLDRTVKVWSLG 171 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc--eEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence 99999999999999999999998 99999999976 6778899998 7899999999 777888887 5899999998
Q ss_pred cCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
+... .-++.+|.+-+
T Consensus 172 s~~~--------nfTl~gHekGV--------------------------------------------------------- 186 (794)
T KOG0276|consen 172 SPHP--------NFTLEGHEKGV--------------------------------------------------------- 186 (794)
T ss_pred CCCC--------ceeeeccccCc---------------------------------------------------------
Confidence 7665 34455555554
Q ss_pred eceeeeeEEEecCC--CEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEe
Q 047837 240 DLKVKNGFALSASS--KLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQ 317 (882)
Q Consensus 240 ~~~~~~~~~~s~d~--~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (882)
+++.|-+.| .+|++|+.|.+|+|||.++..++.++. | |...+..+.
T Consensus 187 -----N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe--------G-------------------Ht~Nvs~v~ 234 (794)
T KOG0276|consen 187 -----NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE--------G-------------------HTNNVSFVF 234 (794)
T ss_pred -----ceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh--------c-------------------ccccceEEE
Confidence 788887754 599999999999999999999998874 4 445556889
Q ss_pred ecCCCeE-EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEE
Q 047837 318 FSTSEKL-VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIR 396 (882)
Q Consensus 318 ~s~~~~l-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~ 396 (882)
|.|.-.+ ++|+.||+++||+..+.+... .+.-.-+++|+|... +.+..++.|...|.|.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty~lE~---tLn~gleRvW~I~~~-----------------k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTYKLEK---TLNYGLERVWCIAAH-----------------KGDGKIAVGFDEGSVT 294 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcceehhh---hhhcCCceEEEEeec-----------------CCCCeEEEeccCCcEE
Confidence 9999775 456669999999987765433 233345567766642 4555677777766654
Q ss_pred EEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCC
Q 047837 397 LWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSS 476 (882)
Q Consensus 397 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~ 476 (882)
+ .+....+ .+..++.|+. ++..|. .|..+
T Consensus 295 v-~lgreeP------------------------------------------~vsMd~~gKI-iwa~~~-ei~~~------ 323 (794)
T KOG0276|consen 295 V-KLGREEP------------------------------------------AVSMDSNGKI-IWAVHS-EIQAV------ 323 (794)
T ss_pred E-EccCCCC------------------------------------------ceeecCCccE-EEEcCc-eeeee------
Confidence 3 3332221 2223333322 222222 11111
Q ss_pred CCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeE---EEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc
Q 047837 477 KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLI---ESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
.+-+.+.++ ++..+..+. +.+-.-.-....++-+|+|+++++++ ||.-.||..-.-+
T Consensus 324 --------------~~ks~~~~~-----ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R 383 (794)
T KOG0276|consen 324 --------------NLKSVGAQK-----EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALR 383 (794)
T ss_pred --------------eceeccCcc-----cccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehh
Confidence 111222221 222221111 11111111234577899998777665 6777777532110
Q ss_pred cceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN 633 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 633 (882)
....+.-....|++|....++-..++.|+++ +..+..+.+....+ +..--.|.+|... .+
T Consensus 384 -----------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~------~e~i~gg~Llg~~-ss 443 (794)
T KOG0276|consen 384 -----------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS------AEGIFGGPLLGVR-SS 443 (794)
T ss_pred -----------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc------eeeecCCceEEEE-eC
Confidence 1112567788999998888888889999999 77777777752222 1111224455554 56
Q ss_pred CcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 634 KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 634 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
+.+++||..+++.++.+.- ....+.|+.+|.+++.++.|. .++...
T Consensus 444 ~~~~fydW~~~~lVrrI~v---~~k~v~w~d~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 444 DFLCFYDWESGELVRRIEV---TSKHVYWSDNGELVAIAGDDS-FYILKF 489 (794)
T ss_pred CeEEEEEcccceEEEEEee---ccceeEEecCCCEEEEEecCc-eeEEEe
Confidence 6899999999999998864 345788999998888777654 344433
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.3e-35 Score=303.04 Aligned_cols=277 Identities=20% Similarity=0.309 Sum_probs=232.0
Q ss_pred CCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
...++|..|+ +++.+||.|..|..|++|.+...+.. +..... .+.- .......-....+
T Consensus 378 ~~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~-~l~~------------------~d~~sad~~~~~~ 436 (707)
T KOG0263|consen 378 YQGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLK-KLKDAS-DLSN------------------IDTESADVDVDML 436 (707)
T ss_pred CCcceeEeec-CCcchhhccccccEEEEEecchhhhc-cccchh-hhcc------------------ccccccchhhhhc
Confidence 4678899998 88889999999999999999854321 100000 0000 0000000012334
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
.....+....+-+|.++|....|+|+.+ +|+++++|+++++|.+.+. ..+..+.+|..+|..+.|+
T Consensus 437 D~~~~~~~~~L~GH~GPVyg~sFsPd~r-------------fLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 437 DDDSSGTSRTLYGHSGPVYGCSFSPDRR-------------FLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred cccCCceeEEeecCCCceeeeeeccccc-------------ceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEec
Confidence 4445566667889999999999999998 9999999999999999986 7788888999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec
Q 047837 530 CNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA 609 (882)
Q Consensus 530 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 609 (882)
|.|-++|+++.|++.++|...... ..+++. +|.+.|.|+.|+|+..++++|+.|.+||+||+.+|..++.|.
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~-PlRifa-----ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-- 574 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNK-PLRIFA-----GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-- 574 (707)
T ss_pred CCceEEEecCCCceeeeeecccCC-chhhhc-----ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec--
Confidence 999999999999999999988533 333333 445799999999999999999999999999999999999998
Q ss_pred cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 047837 610 KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 610 ~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
+|.++|++++|||+|++||+|+.||.|.+||+.+|+++..+.+|++.|.+|.|+.||..||++|.|.+|++||+......
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765544
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=264.40 Aligned_cols=330 Identities=16% Similarity=0.203 Sum_probs=267.0
Q ss_pred eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 239 VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 239 ~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.|...+.+++.+|+.+++++|+.|..-.+|++.++.....+. .|...++++.|
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt---------------------------gHKDSVt~~~F 114 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT---------------------------GHKDSVTCCSF 114 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec---------------------------CCCCceEEEEE
Confidence 355667899999999999999999999999999988665543 45566779999
Q ss_pred cCCCeEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEE
Q 047837 319 STSEKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRL 397 (882)
Q Consensus 319 s~~~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~v 397 (882)
+.+|.+|+.+. +|.|+||+..++..... +. ..+ ..+.=+.|+ |.+..|+.|+.||.+.+
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~~---~~---~e~-------------~dieWl~WH-p~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQWK---LD---QEV-------------EDIEWLKWH-PRAHILLAGSTDGSVWM 174 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEEE---ee---ccc-------------CceEEEEec-ccccEEEeecCCCcEEE
Confidence 99999888766 99999999988754332 21 122 233346777 68999999999999999
Q ss_pred EecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCC
Q 047837 398 WDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSK 477 (882)
Q Consensus 398 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~ 477 (882)
|.+.++.. ..++.+|+.++++=.|.|+|+
T Consensus 175 w~ip~~~~---------------------------------------------------~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 175 WQIPSQAL---------------------------------------------------CKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred EECCCcce---------------------------------------------------eeEecCCCCCcccccccCCCc
Confidence 99987532 224678999999999999998
Q ss_pred CCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce
Q 047837 478 KDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY 556 (882)
Q Consensus 478 ~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 556 (882)
.++++..||+|++||+.++ .++..+. .......++.++..+..++.|..++.+++-+..+++...
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred -------------eEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 8999999999999999998 5554444 334557788899899999999999998888877655433
Q ss_pred eeec--cceecccCCc---eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEe
Q 047837 557 KISR--RHQQLASQGT---VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY 631 (882)
Q Consensus 557 ~~~~--~~~~~~~~~~---v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 631 (882)
.... .+....+... |..+.++..-.+.|+|+-||+|.|||+...++...+ .|...|+.+.|-+ ..+|++++
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCCceEEEEEcC-cchheeec
Confidence 3321 1111222333 444555556678899999999999999988877777 4888999999999 78999999
Q ss_pred CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 632 SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 632 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.+|.|+.||.++|+++..+.||...|.+++.+|+.++++|+|.|++.+||++.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999874
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4e-31 Score=259.07 Aligned_cols=507 Identities=13% Similarity=0.161 Sum_probs=349.2
Q ss_pred EEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--C--------EEEEEEcCcc
Q 047837 49 CVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--G--------YIYLWNWRSA 118 (882)
Q Consensus 49 ~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~--------~i~iWd~~~g 118 (882)
.+-+-|.|..+... -..+.+++.+...+ +...||...|.||+.+||.-++++|- | .++|||..+-
T Consensus 70 Nly~lptgE~vyfv----A~V~Vl~n~ee~~Q-r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L 144 (626)
T KOG2106|consen 70 NLYLLPTGELVYFV----AAVGVLYNWEERSQ-RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL 144 (626)
T ss_pred eeEEccCccEEEEe----ccEEEEEeehhhhc-ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccc
Confidence 34556777666655 22566777755333 34567999999999999998888765 3 6999998888
Q ss_pred eeeeeeecCCcccceeEEEEcc--CCCEEEEECCC---cEEEEEcccCccceeccccCccceeecCccccccccccceEE
Q 047837 119 MLVMKLKANSSCSAITSACFSS--DAKFIVTAGKK---HLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFV 193 (882)
Q Consensus 119 ~~~~~~~~~~~~~~v~~l~fs~--d~~~l~~~~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 193 (882)
..+..+.... ..|.+++|++ .|.+|+...++ .+.+||+..+.. .....-
T Consensus 145 ~TL~V~g~f~--~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~--------~~~vk~---------------- 198 (626)
T KOG2106|consen 145 STLHVIGFFD--RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK--------LGPVKT---------------- 198 (626)
T ss_pred eeeeeecccc--ccceeeeecccCCCceEEEecCCCccccchhhchhhhc--------cCccee----------------
Confidence 8777776444 7899999998 46677776653 489999976543 000000
Q ss_pred EeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccc
Q 047837 194 SVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSL 273 (882)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 273 (882)
....+..+.|.|.+..|++.+..|.+.+|+.+.+
T Consensus 199 ----------------------------------------------sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~ 232 (626)
T KOG2106|consen 199 ----------------------------------------------SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGG 232 (626)
T ss_pred ----------------------------------------------ccceEEEEEeccCCCcEEEEeCCceEEEEEccCC
Confidence 0122367899999998998899999999999877
Q ss_pred eecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecC
Q 047837 274 KHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSH 353 (882)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 353 (882)
....+... +. .+...-+++++|.++|..+++.++|.|.||+..+.+.... ...
T Consensus 233 ~l~k~~~~-----fe------------------k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~---~~a- 285 (626)
T KOG2106|consen 233 SLVKRQGI-----FE------------------KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQ---VHA- 285 (626)
T ss_pred ceEEEeec-----cc------------------cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeE---eee-
Confidence 65443210 01 1122557899999999999999999999999865433221 113
Q ss_pred cceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCc--cceeeecCCcceEeeee
Q 047837 354 SACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHE--SLNIEPMSTAHLVSAGI 431 (882)
Q Consensus 354 ~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 431 (882)
|++.|.+++.. .+|. |++|+.|..|..|| ..-+.+++...+.+ .+..-..+... +..|.
T Consensus 286 ---------------H~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~vGT 346 (626)
T KOG2106|consen 286 ---------------HDGGVFSLCML-RDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-ILVGT 346 (626)
T ss_pred ---------------cCCceEEEEEe-cCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EEEee
Confidence 56666666665 5665 55699999999999 33333332222221 11111111111 11111
Q ss_pred eeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce
Q 047837 432 FERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD 511 (882)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~ 511 (882)
-++. +.. ---.++-.+...+|......++.+|+.+ .+++++.|+.+++|+ .. +
T Consensus 347 trN~----------iL~-Gt~~~~f~~~v~gh~delwgla~hps~~-------------q~~T~gqdk~v~lW~-~~--k 399 (626)
T KOG2106|consen 347 TRNF----------ILQ-GTLENGFTLTVQGHGDELWGLATHPSKN-------------QLLTCGQDKHVRLWN-DH--K 399 (626)
T ss_pred ccce----------EEE-eeecCCceEEEEecccceeeEEcCCChh-------------heeeccCcceEEEcc-CC--c
Confidence 1111 111 1112334456778999999999999988 899999999999999 22 3
Q ss_pred eEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCc
Q 047837 512 LIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKK 591 (882)
Q Consensus 512 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 591 (882)
+.-. ..-..++.++.|+|.| .+|.|+..|...+.|.++.. ...+... ..++++++|+|+|.+||.|+.|+.
T Consensus 400 ~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-lv~~~~d------~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 400 LEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-LVTIHTD------NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred eeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecccce-eEEEEec------CCceEEEEEcCCCCEEEEecCCCe
Confidence 3222 2245778999999999 99999999999999998633 2222221 368999999999999999999999
Q ss_pred EEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEE-----------------E-ccC
Q 047837 592 INSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAK-----------------A-MGH 653 (882)
Q Consensus 592 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~-----------------~-~~h 653 (882)
|++|-+..+..........+..+|+.+.||+|++||.+-+.|-.|-.|.....+.+.. + ..|
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 9999997654433332234458999999999999999999999999995432221111 1 125
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc----ccCCCCCcccEEEecCCCeEEEec
Q 047837 654 GEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR----NFAQPAALSPIIFCEEEDQKCRMD 714 (882)
Q Consensus 654 ~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~ 714 (882)
...|..++-+.+.++|+++...|.|++|...-..... ...+...+..+.|...+..++...
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 5667777888899999999999999999876433322 225666678888988887766655
No 33
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=264.37 Aligned_cols=496 Identities=14% Similarity=0.166 Sum_probs=334.5
Q ss_pred CCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-eeEEeeccc-cceeEEEECCCCCEEEEEc--CEEEEEEcCcce
Q 047837 44 PKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA-FISELKGHL-YGVECIAFSPDGEHLVTVG--GYIYLWNWRSAM 119 (882)
Q Consensus 44 ~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~-~~~~l~~h~-~~V~~lafspdg~~Las~~--~~i~iWd~~~g~ 119 (882)
|.+|+|+|+|.+.+.||++-. +|.|.||++..+= +...+.++. ..|.+|+|++.+ +|.+.+ |.|.-||+.+++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt--~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRT--DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred ccceEEEEEeccCCceeeecc--CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCc
Confidence 388999999999999999966 8999999998653 445577755 579999999555 555555 999999999999
Q ss_pred eeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeec
Q 047837 120 LVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISA 198 (882)
Q Consensus 120 ~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 198 (882)
.+..+.... +.|++++.+|.+..++.+.+ |.+.+.+...+.....+.+..
T Consensus 102 ~~~~~d~~g--g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r--------------------------- 152 (691)
T KOG2048|consen 102 QKYNIDSNG--GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR--------------------------- 152 (691)
T ss_pred eeEEecCCC--cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc---------------------------
Confidence 999988877 99999999999998888865 767667766554411111110
Q ss_pred ccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceeccc
Q 047837 199 TWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGT 278 (882)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~ 278 (882)
....+.+++|+|++..|+.|+.||.|++||...+..+..
T Consensus 153 -----------------------------------------q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 153 -----------------------------------------QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI 191 (691)
T ss_pred -----------------------------------------ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE
Confidence 012237899999999999999999999999998876652
Q ss_pred ccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceee
Q 047837 279 LHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIW 358 (882)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 358 (882)
... +...+.. ....-+.++.|..++.+++|...|+|.+||...+.... .
T Consensus 192 ~~~-~~d~l~k------------------~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiq------S------ 240 (691)
T KOG2048|consen 192 ITM-QLDRLSK------------------REPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQ------S------ 240 (691)
T ss_pred eee-ccccccc------------------CCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhh------h------
Confidence 110 0000000 12223567889999999999999999999998765432 1
Q ss_pred eecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeee
Q 047837 359 DIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTME 438 (882)
Q Consensus 359 ~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (882)
...|+..|.|++.. ++++++++++.|+.|..+...+..........
T Consensus 241 -------~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~-------------------------- 286 (691)
T KOG2048|consen 241 -------HSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSR-------------------------- 286 (691)
T ss_pred -------hhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeecc--------------------------
Confidence 23478888899988 78899999999999999988776431100000
Q ss_pred eeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCC--CCc--c-------ceeccCCceEEEEEcCCCcEEEEEcC
Q 047837 439 TSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSK--KDD--V-------LEEVTDSHYFLASGGRDRTIHLYDVK 507 (882)
Q Consensus 439 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~-------~~~~~~~~~~l~~g~~dg~v~iwd~~ 507 (882)
.......++.++..++ ..+.+ +.-..+++.+... ... . ........++|+.--....+.+|.+.
T Consensus 287 r~~h~hdvrs~av~~~---~l~sg--G~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 287 RDLHAHDVRSMAVIEN---ALISG--GRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred ccCCcccceeeeeecc---eEEec--ceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc
Confidence 0011122344444333 11111 1111111111111 000 0 00000011123333334455666654
Q ss_pred CC--------ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC
Q 047837 508 RN--------FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT 579 (882)
Q Consensus 508 ~~--------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 579 (882)
+. ..+.+........|.+.+.||+|++|+.+.-. ..++|.++... ..+...........-....+.|+-|
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid 439 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTID 439 (691)
T ss_pred CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEec
Confidence 42 11223333445679999999999999987754 48888887544 2222222222222236778899999
Q ss_pred CCEEEEEe-CCCcEEEEEccCC--ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCC
Q 047837 580 MEVVITVG-QDKKINSFSIAAG--KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEV 656 (882)
Q Consensus 580 ~~~l~~~~-~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 656 (882)
+..++.++ .+..+.++++.+. +.+..+........|..++.||+|+|||+.+..|.|.+|++++++...........
T Consensus 440 ~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~ 519 (691)
T KOG2048|consen 440 KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNID 519 (691)
T ss_pred CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcc
Confidence 99888888 6778888887754 44445544456788999999999999999999999999999988754444345589
Q ss_pred eEEEEECC-CCCEEEEEeCCCeEEEEeCC
Q 047837 657 ITGVTFLP-DCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 657 v~~l~~s~-d~~~l~s~~~dg~i~vwd~~ 684 (882)
|+.++|+| +...|+.+..|+.+.-||++
T Consensus 520 vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred eeeeeccccccCcEEEEecCCeEEEEecc
Confidence 99999994 66789999999999999994
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-34 Score=266.74 Aligned_cols=285 Identities=23% Similarity=0.308 Sum_probs=245.2
Q ss_pred CCCCCCcEEEeecCCCeEEEEe-CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 307 TPTIPNAIACQFSTSEKLVVVY-GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 307 ~~~~~~~~~~~~s~~~~ll~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
.++...+..+-|.|+-.+++.. .|++|++||..+++.. ..++||++.+.+| +|+ ..|++
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e---~~LrGHt~sv~di----------------~~~-a~Gk~ 164 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE---RSLRGHTDSVFDI----------------SFD-ASGKY 164 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhh---hhhhccccceeEE----------------EEe-cCccE
Confidence 3455667788999998866654 6999999999998763 3566666655554 444 78899
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
+++++.|-.+++||..+.....+ ...+|..
T Consensus 165 l~tcSsDl~~~LWd~~~~~~c~k--------------------------------------------------s~~gh~h 194 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTFFRCIK--------------------------------------------------SLIGHEH 194 (406)
T ss_pred EEecCCccchhheeHHHHHHHHH--------------------------------------------------HhcCccc
Confidence 99999998899999986432211 2347888
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLV 545 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 545 (882)
.|.+++|-|.+. ++++++.|.+|+.|++.++ .++.++.+|...|..++.+.||..+|+++.|.+++
T Consensus 195 ~vS~V~f~P~gd-------------~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 195 GVSSVFFLPLGD-------------HILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred ceeeEEEEecCC-------------eeeecccccceeEEecccc-eeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 899999999987 9999999999999999998 78999999999999999999999999999999999
Q ss_pred EEeCccCccceeeeccceecccCCceEEEEEecC---------------CCEEEEEeCCCcEEEEEccCCceEEEEEecc
Q 047837 546 VRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT---------------MEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------------~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 610 (882)
+|-+.+..... ..+.| +.+|.+++|.|. +.++.+++.|++|++||+.+|.++.++. +
T Consensus 261 vW~~~t~~~k~-~lR~h-----Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~--g 332 (406)
T KOG0295|consen 261 VWVVATKQCKA-ELREH-----EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV--G 332 (406)
T ss_pred EEEeccchhhh-hhhcc-----ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe--c
Confidence 99998654332 23333 358888888773 2589999999999999999999999998 9
Q ss_pred CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 611 DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 611 ~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
|.+.|..++|+|.|+||+++.+|+++++||+++++++..+..|..-|+++.|+.+..+++||+-|..+++|+.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-33 Score=289.51 Aligned_cols=271 Identities=21% Similarity=0.343 Sum_probs=219.3
Q ss_pred eeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCC
Q 047837 243 VKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSE 322 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 322 (882)
.+.|..|++|+.+||.|..|..|++|.+...+. ..++ +...+ .
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk---------~~~~l-------------------------~-- 422 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-KKLK---------DASDL-------------------------S-- 422 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhh-cccc---------chhhh-------------------------c--
Confidence 348999999999999999999999999985421 1111 00000 0
Q ss_pred eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCC
Q 047837 323 KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLAL 402 (882)
Q Consensus 323 ~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~ 402 (882)
++=..+.|-.+.+.|.+.. .....+.||+++|+ .+.|+ |+.++|++++.|+++|+|.+.+
T Consensus 423 ~~d~~sad~~~~~~D~~~~---~~~~~L~GH~GPVy----------------g~sFs-Pd~rfLlScSED~svRLWsl~t 482 (707)
T KOG0263|consen 423 NIDTESADVDVDMLDDDSS---GTSRTLYGHSGPVY----------------GCSFS-PDRRFLLSCSEDSSVRLWSLDT 482 (707)
T ss_pred cccccccchhhhhccccCC---ceeEEeecCCCcee----------------eeeec-ccccceeeccCCcceeeeeccc
Confidence 0001122222334443332 23334666555554 55555 8999999999999999999998
Q ss_pred CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccc
Q 047837 403 QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVL 482 (882)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 482 (882)
...+ +.+.+|..+|..+.|+|.|-
T Consensus 483 ~s~~---------------------------------------------------V~y~GH~~PVwdV~F~P~Gy----- 506 (707)
T KOG0263|consen 483 WSCL---------------------------------------------------VIYKGHLAPVWDVQFAPRGY----- 506 (707)
T ss_pred ceeE---------------------------------------------------EEecCCCcceeeEEecCCce-----
Confidence 6543 34679999999999999887
Q ss_pred eeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccc
Q 047837 483 EEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 483 ~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
++|+++.|++.++|..... .+++.+.+|.+.|.|+.|+|+..++++|+.|.++++||+.++.....+ ..
T Consensus 507 --------YFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~G- 575 (707)
T KOG0263|consen 507 --------YFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TG- 575 (707)
T ss_pred --------EEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cC-
Confidence 9999999999999999886 789999999999999999999999999999999999999987665443 33
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
|.++|.+++|||+|++|++|+.|+.|.+||+.+++++..+. +|.+.|.++.||.||..||+|+.|.+|++||+.
T Consensus 576 ----H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 576 ----HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred ----CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh--cccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 45899999999999999999999999999999999999998 889999999999999999999999999999986
Q ss_pred C
Q 047837 643 S 643 (882)
Q Consensus 643 ~ 643 (882)
.
T Consensus 650 ~ 650 (707)
T KOG0263|consen 650 K 650 (707)
T ss_pred h
Confidence 4
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.6e-34 Score=271.60 Aligned_cols=284 Identities=16% Similarity=0.203 Sum_probs=242.9
Q ss_pred CCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 309 TIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 309 ~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
....|..+.|.|+|+ |++++..|.+.+|+...- .|-.+...|+..|+++.|+ .++.+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-------------------nFEtilQaHDs~Vr~m~ws-~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-------------------NFETILQAHDSPVRTMKWS-HNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee-------------------eHHHHhhhhcccceeEEEc-cCCCEEE
Confidence 345577899999985 888888999999997432 2223346688899999998 8999999
Q ss_pred EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 388 TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 388 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
+|+.+|.|++|+..-.... .....|...|
T Consensus 155 SgD~gG~iKyWqpnmnnVk---------------------------------------------------~~~ahh~eaI 183 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK---------------------------------------------------IIQAHHAEAI 183 (464)
T ss_pred EcCCCceEEecccchhhhH---------------------------------------------------HhhHhhhhhh
Confidence 9999999999998743321 1123456899
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVR 547 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vw 547 (882)
++++|+|... .+++++.||+|+|||.... +....+.+|.-.|.+++|+|....|++++.|..|++|
T Consensus 184 RdlafSpnDs-------------kF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 184 RDLAFSPNDS-------------KFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred heeccCCCCc-------------eeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence 9999999777 8999999999999999876 5667789999999999999999999999999999999
Q ss_pred eCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECC-CCCE
Q 047837 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP-SGSY 626 (882)
Q Consensus 548 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~ 626 (882)
|.+++.+...+. .|...|..+.|+|++.+|++++.|..+++||+++-+.+++++ +|...+++++|+| ...+
T Consensus 250 DprSg~cl~tlh------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r--~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 250 DPRSGSCLATLH------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR--GHKKDVTSLTWHPLNESL 321 (464)
T ss_pred cCCCcchhhhhh------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh--cchhhheeeccccccccc
Confidence 999887766553 344799999999999999999999999999999989999998 9999999999999 5678
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEE-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 627 LVCSYSNKSICLYDFISGEMVAKA-MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
|++|+.||.|..|.+...+++..+ .+|...|++|+|+|-|.+|++|+.|.++++|.-.-
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 889999999999999865655554 46999999999999999999999999999997643
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.7e-32 Score=246.95 Aligned_cols=289 Identities=19% Similarity=0.331 Sum_probs=234.8
Q ss_pred ccCCCCCCcEEEeecCCCeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 305 KLTPTIPNAIACQFSTSEKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 305 ~~~~~~~~~~~~~~s~~~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
.+..+.+.++.+.|.|+|.+++ ++.|..|.+|++..... ....+.+|.+.|..+.+ . .++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~----------------~-~d~ 102 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHG----------------M-RDG 102 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeee----------------c-cCC
Confidence 3456677788999999998555 56699999999754332 22345566666655554 4 899
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
..+++++.|.+++.||+++++..++ ..+|
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~rk---------------------------------------------------~k~h 131 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIRK---------------------------------------------------HKGH 131 (338)
T ss_pred CEEEEecCCceEEEEecccceeeeh---------------------------------------------------hccc
Confidence 9999999999999999999987765 3467
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCe
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRS 543 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 543 (882)
..-|+.+.-..-+. .++.+|+.|+++++||+++. ..++++. ....++++.|..++..+++|+-|+.
T Consensus 132 ~~~vNs~~p~rrg~------------~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 132 TSFVNSLDPSRRGP------------QLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cceeeecCccccCC------------eEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecccccceeeccccCc
Confidence 77777766443333 37889999999999999875 5555554 4567999999999999999999999
Q ss_pred EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC----CceEEEEEeccCCC--CcEE
Q 047837 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA----GKLIRSFKQAKDFG--DPMK 617 (882)
Q Consensus 544 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~~~--~v~~ 617 (882)
|++||++.......+ .+|.++|+.+..+|+|.++.+-+.|.++++||++. .+++..+..+.|.- ....
T Consensus 198 ikvWd~r~~d~~~~l------sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTL------SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred eeeeccccCcceEEe------ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 999999866544433 34458999999999999999999999999999974 34577777554544 3457
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 618 VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 618 ~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
++|+|+++++.+|+.|+.+++||......+..+.||.+.|.++.|+|...+|.+++.|.+|++=++
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 899999999999999999999999888999999999999999999999999999999999987544
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-31 Score=239.91 Aligned_cols=289 Identities=19% Similarity=0.391 Sum_probs=225.0
Q ss_pred eEEEEEecCCCCCeEEEEEcCC-CCEEEEeecCCCCeEEEEECCC---ceeeEEee-ccccceeEEEECCCCCEEEEEc-
Q 047837 34 QSHLMVSHRMPKPLCCVAMSRD-GRYVAAGESGPQPAVLVWDCAN---LAFISELK-GHLYGVECIAFSPDGEHLVTVG- 107 (882)
Q Consensus 34 ~~~~l~~h~~~~~I~~va~spd-g~~la~g~~~~d~~I~vwd~~t---~~~~~~l~-~h~~~V~~lafspdg~~Las~~- 107 (882)
..+.+.+|+ +.|..+||+|- |..||+++ .|..|+||+... ..+...|. +|+..|..+||+|.|+|||+++
T Consensus 6 ~~~~~~gh~--~r~W~~awhp~~g~ilAscg--~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 6 LEQKLSGHK--DRVWSVAWHPGKGVILASCG--TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred eEEeecCCC--CcEEEEEeccCCceEEEeec--CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 456788999 89999999998 89999995 489999999984 45555554 5999999999999999999999
Q ss_pred -CEEEEEEcCcc--eeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccc
Q 047837 108 -GYIYLWNWRSA--MLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVN 183 (882)
Q Consensus 108 -~~i~iWd~~~g--~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 183 (882)
.++.||.-..+ +++.++++|. ..|.+++|+++|.+||+|++ +.|.||.+..+.. ..-...++.|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHE--nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-----fec~aVL~~Ht---- 150 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHE--NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-----FECIAVLQEHT---- 150 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccc--cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-----EEEEeeecccc----
Confidence 99999986654 6888999988 99999999999999999997 7899999975433 00111222233
Q ss_pred ccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCC
Q 047837 184 LGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNG 263 (882)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg 263 (882)
+.+..+.|+|...+|++++.|.
T Consensus 151 ----------------------------------------------------------qDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 151 ----------------------------------------------------------QDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred ----------------------------------------------------------ccccEEEEcCCcceeEEeccCC
Confidence 2337788999999999999999
Q ss_pred eEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccc
Q 047837 264 AVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNE 343 (882)
Q Consensus 264 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~ 343 (882)
+|++|+-..+. . |
T Consensus 173 TIk~~~~~~dd------------------------------------------------d------------W------- 185 (312)
T KOG0645|consen 173 TIKVYRDEDDD------------------------------------------------D------------W------- 185 (312)
T ss_pred eEEEEeecCCC------------------------------------------------C------------e-------
Confidence 99998865210 0 1
Q ss_pred cceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCC
Q 047837 344 ATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMST 423 (882)
Q Consensus 344 ~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 423 (882)
.....+.+|...||.+.| . +.|..|++++.|+++++|...+.-
T Consensus 186 -~c~~tl~g~~~TVW~~~F----------------~-~~G~rl~s~sdD~tv~Iw~~~~~~------------------- 228 (312)
T KOG0645|consen 186 -ECVQTLDGHENTVWSLAF----------------D-NIGSRLVSCSDDGTVSIWRLYTDL------------------- 228 (312)
T ss_pred -eEEEEecCccceEEEEEe----------------c-CCCceEEEecCCcceEeeeeccCc-------------------
Confidence 112356677777776665 3 778999999999999999865211
Q ss_pred cceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEE
Q 047837 424 AHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHL 503 (882)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~i 503 (882)
-..|...+..++|. ++ .|++++.|+.|++
T Consensus 229 ------------------------------------~~~~sr~~Y~v~W~-~~--------------~IaS~ggD~~i~l 257 (312)
T KOG0645|consen 229 ------------------------------------SGMHSRALYDVPWD-NG--------------VIASGGGDDAIRL 257 (312)
T ss_pred ------------------------------------chhcccceEeeeec-cc--------------ceEeccCCCEEEE
Confidence 22467788888888 44 6999999999999
Q ss_pred EEcCCC-----cee-EEEeecCCCCEEEEEEccC-CCEEEEEeCCCeEEEEeCc
Q 047837 504 YDVKRN-----FDL-IESIDDHSAAVTAVKFTCN-GRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 504 wd~~~~-----~~~-~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~ 550 (882)
|.-... ..+ ...-..|...|++++|+|. ..+|++++.||.|++|.+.
T Consensus 258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 258 FKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 986542 111 2234568899999999994 7899999999999999875
No 39
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2e-30 Score=264.28 Aligned_cols=576 Identities=17% Similarity=0.211 Sum_probs=359.7
Q ss_pred ccccCCCC---CeEEEeeceEEEEEECCCCceEE--EEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-
Q 047837 6 NIKKPDSS---SKCAYVAGCVLVVYDVDSSTQSH--LMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA- 79 (882)
Q Consensus 6 ~~~~pd~~---~~~~~~~~~~v~vwd~~~~~~~~--~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~- 79 (882)
+.+-|+.. ..+....++.|++|.++....+. .+.+|. +.|++++..-....+. ..|+.+.+||.+..+
T Consensus 60 ~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a~~~~~~~~--~ad~~v~vw~~~~~e~ 133 (764)
T KOG1063|consen 60 VHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVARSSVMTCK--AADGTVSVWDKQQDEV 133 (764)
T ss_pred EEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEeeeeEEEee--ccCceEEEeecCCCce
Confidence 44555533 23444457899999998554443 444554 5666666544444443 238899999996655
Q ss_pred -eeEEeecccc--ceeEEEECC-CCCEEEEEc---CEEEEEEcCcc--eeeeeeecCCcccceeEEEEccCC---CEEEE
Q 047837 80 -FISELKGHLY--GVECIAFSP-DGEHLVTVG---GYIYLWNWRSA--MLVMKLKANSSCSAITSACFSSDA---KFIVT 147 (882)
Q Consensus 80 -~~~~l~~h~~--~V~~lafsp-dg~~Las~~---~~i~iWd~~~g--~~~~~~~~~~~~~~v~~l~fs~d~---~~l~~ 147 (882)
+...++--.+ --.|+++.| .+.+|.+++ ..|.++.-.++ +.+..+.+|. +.|.+++|...+ -+|++
T Consensus 134 ~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~--DWIrsl~f~~~~~~~~~laS 211 (764)
T KOG1063|consen 134 FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHT--DWIRSLAFARLGGDDLLLAS 211 (764)
T ss_pred eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccc--hhhhhhhhhccCCCcEEEEe
Confidence 3333332222 235777777 566776666 45555544433 4667778877 999999999744 37777
Q ss_pred ECC-CcEEEEEcccCccceeccccCcccee-ecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCce
Q 047837 148 AGK-KHLKFWTIGSSATARTRLNKGTESLT-LHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGI 225 (882)
Q Consensus 148 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 225 (882)
++. ..|+||.+.-+.... ......... ....++ +... +.++ |.++
T Consensus 212 ~SQD~yIRiW~i~~~~~~~--~~~~e~~~t~~~~~~~---------f~~l-----------------~~i~-~~is---- 258 (764)
T KOG1063|consen 212 SSQDRYIRIWRIVLGDDED--SNEREDSLTTLSNLPV---------FMIL-----------------EEIQ-YRIS---- 258 (764)
T ss_pred cCCceEEEEEEEEecCCcc--ccccccccccccCCce---------eeee-----------------eeEE-EEEe----
Confidence 775 679999986544210 000000000 000000 0000 0000 1110
Q ss_pred EEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccce--ecccccccCcccCCCCCccccchhhhccc
Q 047837 226 LYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLK--HAGTLHYSEAKKCNGENDTVSTAKATELY 303 (882)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (882)
....-..|..-|.++.|.|.+..|++++.|.++.+|...+.. -...+...
T Consensus 259 -------~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG--------------------- 310 (764)
T KOG1063|consen 259 -------FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG--------------------- 310 (764)
T ss_pred -------hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEee---------------------
Confidence 111122456677999999999999999999999999876532 11111100
Q ss_pred cccCCCCCCcEEEeecCCCeEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 304 FKLTPTIPNAIACQFSTSEKLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 304 ~~~~~~~~~~~~~~~s~~~~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
...+.......+.|+|++..+.+ +..|..++|...+...-..... ..+|...|..++|. |.
T Consensus 311 -e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~----------------iSGH~~~V~dv~W~-ps 372 (764)
T KOG1063|consen 311 -EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV----------------ISGHVDGVKDVDWD-PS 372 (764)
T ss_pred -cccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc----------------cccccccceeeeec-CC
Confidence 01123344568999999986665 5589999999433222121112 34566777777777 88
Q ss_pred CcEEEEeeCCCcEEEEecCCCc----eeeec-ccCCccceeeecC-CcceEeeeee------eee--------------e
Q 047837 383 GVSFSTCSADGTIRLWDLALQS----ELSKD-VLGHESLNIEPMS-TAHLVSAGIF------ERN--------------T 436 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~----~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~------~~~--------------~ 436 (882)
|++|++.+.|.+-|++-.-..+ ++.+. ..++...++.... ....++.+.- +.. .
T Consensus 373 GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~ 452 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCF 452 (764)
T ss_pred CCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccc
Confidence 9999999999999998765222 12221 2333333333333 1222222100 000 0
Q ss_pred eee--eccccCeEEEEEcC---------CCCE----------------------------------EEeeeccceEEEEE
Q 047837 437 MET--SVSTQGYRSMAVSS---------RGST----------------------------------LLLDAHDAEILSLS 471 (882)
Q Consensus 437 ~~~--~~~~~~~~~~~~s~---------~~~~----------------------------------~~~~~~~~~v~~~~ 471 (882)
... ......+..+-.|. +|.. ..+-+|...|.+++
T Consensus 453 ~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~ 532 (764)
T KOG1063|consen 453 KGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALA 532 (764)
T ss_pred cCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEE
Confidence 000 00000000111110 0000 12458999999999
Q ss_pred EecCCCCCccceeccCCceEEEEEcCC-----CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 472 FSLSSKKDDVLEEVTDSHYFLASGGRD-----RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
.+|+++ ++|++... ..|++|+..+- .....+.+|.-.|+.++|||||++|++++.|.++.+
T Consensus 533 ~s~~gn-------------liASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 533 ISPTGN-------------LIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred ecCCCC-------------EEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 999998 89998754 45899998763 566689999999999999999999999999999999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC--ceEEEEEeccCCCCcEEEEECC-C
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG--KLIRSFKQAKDFGDPMKVTVDP-S 623 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~sp-d 623 (882)
|..........- -.....|...|.+..|+|++.+++++++|++|++|..... +.+..+....+...|+++++.| +
T Consensus 599 ~~~~~~~~~e~~--fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 599 YEVQEDIKDEFR--FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred eeeecccchhhh--hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc
Confidence 998644322211 1113456678999999999999999999999999999887 5555544446788999999987 2
Q ss_pred ----CCEEEEEeCCCcEEEEEcc------C-Ce-----EEEEEccCCCCeEEEEECCC----------CCEEEEEeCCCe
Q 047837 624 ----GSYLVCSYSNKSICLYDFI------S-GE-----MVAKAMGHGEVITGVTFLPD----------CKHIVSVGGDGL 677 (882)
Q Consensus 624 ----g~~l~~~~~dg~i~iwd~~------~-~~-----~~~~~~~h~~~v~~l~~s~d----------~~~l~s~~~dg~ 677 (882)
+..+++|-..|.|.+|... + +. .+....+|.+.|+.+.|+|. ...|++++.|..
T Consensus 677 ~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~ 756 (764)
T KOG1063|consen 677 HNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDES 756 (764)
T ss_pred cccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccce
Confidence 3378899999999999965 1 11 11223457889999999975 235799999999
Q ss_pred EEEEeCC
Q 047837 678 QRVKEKY 684 (882)
Q Consensus 678 i~vwd~~ 684 (882)
+|++++.
T Consensus 757 vri~nv~ 763 (764)
T KOG1063|consen 757 VRIFNVD 763 (764)
T ss_pred eEEeecc
Confidence 9999864
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-30 Score=260.89 Aligned_cols=429 Identities=15% Similarity=0.187 Sum_probs=309.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEc
Q 047837 38 MVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNW 115 (882)
Q Consensus 38 l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~ 115 (882)
+..|. ..|.++.|+|-.-++.++-. +|.|.|||.++..+++.+.-..-+|.+..|-+...++++|+ ..|+|++.
T Consensus 9 ~~~rS--dRVKsVd~HPtePw~la~Ly--nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 9 FQSRS--DRVKSVDFHPTEPWILAALY--NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhccC--CceeeeecCCCCceEEEeee--cCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34466 78999999999999999865 88999999999999999999999999999999999999999 99999999
Q ss_pred CcceeeeeeecCCcccceeEEEEccCCCEEEEECCC-cEEEEEcccCccceeccccCccceeecCccccccccccceEEE
Q 047837 116 RSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKK-HLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVS 194 (882)
Q Consensus 116 ~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 194 (882)
.+++.+..+..|. +-|.+++.+|.-.++.+++|+ .|++||++.+-. -.+.+++|...
T Consensus 85 nt~ekV~~FeAH~--DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa-------~~qtfeGH~Hy------------- 142 (794)
T KOG0276|consen 85 NTGEKVKTFEAHS--DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA-------CEQTFEGHEHY------------- 142 (794)
T ss_pred ccceeeEEeeccc--cceeeeeecCCCCeEEecCCccEEEEeeccCcee-------eeeEEcCcceE-------------
Confidence 9999999999998 999999999999999999985 799999986543 23344444443
Q ss_pred eeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecC-CCEEEEEecCCeEEeeecccc
Q 047837 195 VISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSAS-SKLIACACSNGAVHLFDIQSL 273 (882)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~ 273 (882)
+.+++|+|. .+.+|+++-|++|++|.+.+.
T Consensus 143 -------------------------------------------------VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 143 -------------------------------------------------VMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred -------------------------------------------------EEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 378899884 668889999999999987642
Q ss_pred eecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecC
Q 047837 274 KHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSH 353 (882)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 353 (882)
.+. .++.||
T Consensus 174 ~~n-----------------------------------------------------------------------fTl~gH 182 (794)
T KOG0276|consen 174 HPN-----------------------------------------------------------------------FTLEGH 182 (794)
T ss_pred CCc-----------------------------------------------------------------------eeeecc
Confidence 211 234455
Q ss_pred cceeeeecccCCCCCCCCCcceeeecc-CCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeee
Q 047837 354 SACIWDIKNLGCENMHDPSVSCVARGC-TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIF 432 (882)
Q Consensus 354 ~~~v~~i~~~~~~~~h~~~v~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (882)
.. +|+|+.+-+ .|..+|++|+.|.+|++||+++..+++.
T Consensus 183 ek----------------GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T------------------------ 222 (794)
T KOG0276|consen 183 EK----------------GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT------------------------ 222 (794)
T ss_pred cc----------------CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH------------------------
Confidence 44 444444431 3556999999999999999999887653
Q ss_pred eeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee
Q 047837 433 ERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL 512 (882)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~ 512 (882)
+.+|...|..+.|+|.-+ ++++|++||+++||+..+- ++
T Consensus 223 ---------------------------LeGHt~Nvs~v~fhp~lp-------------iiisgsEDGTvriWhs~Ty-~l 261 (794)
T KOG0276|consen 223 ---------------------------LEGHTNNVSFVFFHPELP-------------IIISGSEDGTVRIWNSKTY-KL 261 (794)
T ss_pred ---------------------------hhcccccceEEEecCCCc-------------EEEEecCCccEEEecCcce-eh
Confidence 669999999999999998 9999999999999998764 67
Q ss_pred EEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeecccee----------------------------
Q 047837 513 IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQ---------------------------- 564 (882)
Q Consensus 513 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---------------------------- 564 (882)
..++.-.-.+|.+|+-.+.++.++.|...|.|.+ .+-..+....+....+.
T Consensus 262 E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL 340 (794)
T KOG0276|consen 262 EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERL 340 (794)
T ss_pred hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccc
Confidence 7777777889999999998888999888886554 33222222211111100
Q ss_pred ------ccc-CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 047837 565 ------LAS-QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC 637 (882)
Q Consensus 565 ------~~~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~ 637 (882)
++. .-....++-+|+|+++++| .||.-.||-.-.. + ....+.-....|++|....|+--+++.|+
T Consensus 341 ~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~------R-nK~fG~~~eFvw~~dsne~avRes~~~vk 412 (794)
T KOG0276|consen 341 PLSVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALAL------R-NKAFGSGLEFVWAADSNEFAVRESNGNVK 412 (794)
T ss_pred cchhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEeeeh------h-hcccccceeEEEcCCCCeEEEEecCCceE
Confidence 000 0011246677888777765 4677677653211 1 13445667788888877777777788888
Q ss_pred EEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEE
Q 047837 638 LYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKC 711 (882)
Q Consensus 638 iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 711 (882)
++ ++.+....+...-. ..+--.| .|+..-.++.+++||-.++...+.+.... ..+.++.+++.++
T Consensus 413 i~--knfke~ksi~~~~~----~e~i~gg-~Llg~~ss~~~~fydW~~~~lVrrI~v~~--k~v~w~d~g~lVa 477 (794)
T KOG0276|consen 413 IF--KNFKEHKSIRPDMS----AEGIFGG-PLLGVRSSDFLCFYDWESGELVRRIEVTS--KHVYWSDNGELVA 477 (794)
T ss_pred EE--ecceeccccccccc----eeeecCC-ceEEEEeCCeEEEEEcccceEEEEEeecc--ceeEEecCCCEEE
Confidence 88 66666666542111 1111233 44445556778899887776665443221 2344555544333
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=257.73 Aligned_cols=256 Identities=22% Similarity=0.303 Sum_probs=227.6
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
+|..+|+.+.++ |+-.++++++.|++|++||..+++...
T Consensus 106 g~r~~vt~v~~h-p~~~~v~~as~d~tikv~D~~tg~~e~---------------------------------------- 144 (406)
T KOG0295|consen 106 GHRSSVTRVIFH-PSEALVVSASEDATIKVFDTETGELER---------------------------------------- 144 (406)
T ss_pred ccccceeeeeec-cCceEEEEecCCceEEEEEccchhhhh----------------------------------------
Confidence 345555555555 788889999999999999999987632
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
.+.+|...+..++|+..++ ++++++.|-.+++||..+.+++++.+.+|...|.+++
T Consensus 145 -----------~LrGHt~sv~di~~~a~Gk-------------~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~ 200 (406)
T KOG0295|consen 145 -----------SLRGHTDSVFDISFDASGK-------------YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVF 200 (406)
T ss_pred -----------hhhccccceeEEEEecCcc-------------EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEE
Confidence 2568999999999999998 9999999999999999987788889999999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
|-|.|.++++++.|.+|+.|++.++.....+... ...|..++.+.||.++++++.|.+|++|-+.++++...+.
T Consensus 201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h------~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH------SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred EEecCCeeeecccccceeEEecccceeEEeccCc------hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 9999999999999999999999988776655433 3589999999999999999999999999999998888888
Q ss_pred eccCCCCcEEEEECCC---------------CCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEE
Q 047837 608 QAKDFGDPMKVTVDPS---------------GSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 608 ~~~~~~~v~~~~~spd---------------g~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 672 (882)
.|..+|-+++|.|. ++++++++.|++|++||+.+|.++.++.+|...|..++|+|.|+||+++
T Consensus 275 --~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc 352 (406)
T KOG0295|consen 275 --EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC 352 (406)
T ss_pred --ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE
Confidence 78889999998763 3599999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCCCCcccCCCC
Q 047837 673 GGDGLQRVKEKYGILPPRNFAQPA 696 (882)
Q Consensus 673 ~~dg~i~vwd~~~~~~~~~~~~~~ 696 (882)
..|+++++||+...++...+..+.
T Consensus 353 aDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 353 ADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ecCCcEEEEEeccceeeeccCCCc
Confidence 999999999999999888776443
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.1e-32 Score=252.69 Aligned_cols=286 Identities=17% Similarity=0.302 Sum_probs=244.1
Q ss_pred EeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEe
Q 047837 238 SVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQ 317 (882)
Q Consensus 238 ~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (882)
..|..-|.++++.|..+++++|+.|++|+|||+.+|+...++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------------------------------------- 189 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------------------------------------- 189 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee--------------------------------------
Confidence 346777899999999999999999999999999987655332
Q ss_pred ecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEE
Q 047837 318 FSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRL 397 (882)
Q Consensus 318 ~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~v 397 (882)
.| |...|..++++ +...++.+++.|+.|+.
T Consensus 190 ---------------------------------tG----------------hi~~vr~vavS-~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 190 ---------------------------------TG----------------HIETVRGVAVS-KRHPYLFSAGEDKQVKC 219 (460)
T ss_pred ---------------------------------cc----------------hhheeeeeeec-ccCceEEEecCCCeeEE
Confidence 23 34445556666 67789999999999999
Q ss_pred EecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCC
Q 047837 398 WDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSK 477 (882)
Q Consensus 398 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~ 477 (882)
||++..+.++. +.+|-..|.+++.+|.-.
T Consensus 220 wDLe~nkvIR~---------------------------------------------------YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 220 WDLEYNKVIRH---------------------------------------------------YHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred EechhhhhHHH---------------------------------------------------hccccceeEEEeccccce
Confidence 99998876654 458999999999999988
Q ss_pred CCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcccee
Q 047837 478 KDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 478 ~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
.|++|+.|.++++||+++. ..+..+.+|..+|..+.+.|-...+++++.|++|++||+..++....
T Consensus 249 -------------vl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t 314 (460)
T KOG0285|consen 249 -------------VLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT 314 (460)
T ss_pred -------------eEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe
Confidence 9999999999999999987 78899999999999999999888999999999999999998776655
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC 637 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~ 637 (882)
+.. |...+.+++.+|....+|+++.| .|+-|++..|..+..+. +|..-+..++...|| ++++|+++|.+.
T Consensus 315 lt~------hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nls--gh~~iintl~~nsD~-v~~~G~dng~~~ 384 (460)
T KOG0285|consen 315 LTH------HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLS--GHNAIINTLSVNSDG-VLVSGGDNGSIM 384 (460)
T ss_pred eec------ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccc--cccceeeeeeeccCc-eEEEcCCceEEE
Confidence 533 33689999999999999998877 59999999999999987 899999999998886 788899999999
Q ss_pred EEEccCCeEEEEEc-----c---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 638 LYDFISGEMVAKAM-----G---HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 638 iwd~~~~~~~~~~~-----~---h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
.||.++|-..+... | ....|.+.+|...|..|+|+..|.+|++|.-.+.
T Consensus 385 fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 385 FWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred EEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 99999985554431 1 2357899999999999999999999999986553
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-30 Score=268.12 Aligned_cols=369 Identities=15% Similarity=0.257 Sum_probs=278.8
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeee
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVM 122 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~ 122 (882)
..|..++|+|..-+|.++-. .|.|++||..-+.++..|..|.++|..++|+|++.+++||| ..|+||+.++.+++.
T Consensus 10 sRvKglsFHP~rPwILtslH--sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLH--SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccceecCCCCCEEEEeec--CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 68999999999999999965 88999999999999999999999999999999999999999 999999999999999
Q ss_pred eeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccc
Q 047837 123 KLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWT 201 (882)
Q Consensus 123 ~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 201 (882)
++.+|- +-|..+.|++.-.++++++| .+|+||++.+..+ ...+.+|..
T Consensus 88 tL~GHl--DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~--------iavltGHnH--------------------- 136 (1202)
T KOG0292|consen 88 TLLGHL--DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC--------IAVLTGHNH--------------------- 136 (1202)
T ss_pred hhcccc--ceeEEeeccCCCceEEEccCCCeEEEEeccCCce--------EEEEecCce---------------------
Confidence 999998 89999999999999999998 5899999998877 223333433
Q ss_pred cCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccc
Q 047837 202 DNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHY 281 (882)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 281 (882)
-|.|..|.|...++++++-|.+||+||+...+....-+.
T Consensus 137 -----------------------------------------YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 137 -----------------------------------------YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred -----------------------------------------EEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 338999999999999999999999999986543322110
Q ss_pred cCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeec
Q 047837 282 SEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIK 361 (882)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~ 361 (882)
+-...+.++ +. + ..+.|..+.|..
T Consensus 176 ~~e~~~~~~--------------------------------~~-----~-----------------~dLfg~~DaVVK-- 199 (1202)
T KOG0292|consen 176 SLEDQMRGQ--------------------------------QG-----N-----------------SDLFGQTDAVVK-- 199 (1202)
T ss_pred Cchhhhhcc--------------------------------cc-----c-----------------hhhcCCcCeeee--
Confidence 000000000 00 0 001122222211
Q ss_pred ccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeec
Q 047837 362 NLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSV 441 (882)
Q Consensus 362 ~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (882)
..+.+|+.+|+-++|+ |.-.+|++|+.|..|++|.+...+.-.
T Consensus 200 --~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetKaWE---------------------------------- 242 (1202)
T KOG0292|consen 200 --HVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWE---------------------------------- 242 (1202)
T ss_pred --eeecccccccceEEec-CCcceEEecCCcceeeEEEecccccee----------------------------------
Confidence 1135678888888898 777899999999999999987543211
Q ss_pred cccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCC
Q 047837 442 STQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSA 521 (882)
Q Consensus 442 ~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~ 521 (882)
.-...+|.+.|.++-|+|... ++++.++|++|+|||+... ..++++..-.+
T Consensus 243 ---------------vDtcrgH~nnVssvlfhp~q~-------------lIlSnsEDksirVwDm~kR-t~v~tfrrend 293 (1202)
T KOG0292|consen 243 ---------------VDTCRGHYNNVSSVLFHPHQD-------------LILSNSEDKSIRVWDMTKR-TSVQTFRREND 293 (1202)
T ss_pred ---------------ehhhhcccCCcceEEecCccc-------------eeEecCCCccEEEEecccc-cceeeeeccCC
Confidence 112568999999999999888 9999999999999999876 77888887788
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc
Q 047837 522 AVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~ 601 (882)
....++.+|..++++.|-..| +.+|.++... ++.++ + +..|... .|..|+.+|+.+.+
T Consensus 294 RFW~laahP~lNLfAAgHDsG-m~VFkleREr----------------pa~~v--~--~n~LfYv-kd~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHDSG-MIVFKLERER----------------PAYAV--N--GNGLFYV-KDRFIRSYDLRTQK 351 (1202)
T ss_pred eEEEEEecCCcceeeeecCCc-eEEEEEcccC----------------ceEEE--c--CCEEEEE-ccceEEeeeccccc
Confidence 999999999998888776555 7788776322 22222 2 3334443 38999999999865
Q ss_pred eEEEEEeccC---CCCcEEEEECCCCCE-EEEEe
Q 047837 602 LIRSFKQAKD---FGDPMKVTVDPSGSY-LVCSY 631 (882)
Q Consensus 602 ~~~~~~~~~~---~~~v~~~~~spdg~~-l~~~~ 631 (882)
-......... ..++.++.++|.... |++..
T Consensus 352 d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~ 385 (1202)
T KOG0292|consen 352 DTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN 385 (1202)
T ss_pred cceeEeccCCCcccCCcceeeeccccCeEEEEec
Confidence 4433321122 367889999996544 44433
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-32 Score=257.96 Aligned_cols=288 Identities=18% Similarity=0.338 Sum_probs=219.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc---eeeEEeeccccceeEEEECCCCCEEEEEc--CEE
Q 047837 36 HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL---AFISELKGHLYGVECIAFSPDGEHLVTVG--GYI 110 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~---~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i 110 (882)
+.+..|. .+|.-+.||++|+|||+++. |.+..||++... +..+++.+|..+|..++||||.+||++++ ..+
T Consensus 218 qil~~ht--dEVWfl~FS~nGkyLAsaSk--D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 218 QILQDHT--DEVWFLQFSHNGKYLASASK--DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hhHhhCC--CcEEEEEEcCCCeeEeeccC--CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 4667888 89999999999999999976 889999997643 55889999999999999999999999999 889
Q ss_pred EEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccccccc
Q 047837 111 YLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKE 189 (882)
Q Consensus 111 ~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (882)
++||+.+|.+...+... +...+.+++|.|||..+++++. +++..||++.....
T Consensus 294 ~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~------------------------- 347 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG------------------------- 347 (519)
T ss_pred eeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh-------------------------
Confidence 99999999998877654 3478999999999999999985 78999999765430
Q ss_pred ceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeee
Q 047837 190 SYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFD 269 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd 269 (882)
.|.+. ....+.++++++||+++++.+.|..|++++
T Consensus 348 ---------------------------~W~gv------------------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 348 ---------------------------NWEGV------------------RDPKVHDLAITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred ---------------------------ccccc------------------ccceeEEEEEcCCCcEEEEEecccceeeec
Confidence 00000 112237899999999999999999999999
Q ss_pred cccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeee
Q 047837 270 IQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCV 349 (882)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~ 349 (882)
.++......+. .
T Consensus 383 ~e~~~dr~lis----------------------------e---------------------------------------- 394 (519)
T KOG0293|consen 383 REARVDRGLIS----------------------------E---------------------------------------- 394 (519)
T ss_pred hhhhhhhcccc----------------------------c----------------------------------------
Confidence 87543221110 1
Q ss_pred eecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEee
Q 047837 350 LVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSA 429 (882)
Q Consensus 350 ~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (882)
..+|++..++ .+++++++--.+..+++||++....++++. +
T Consensus 395 --------------------~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-G----------------- 435 (519)
T KOG0293|consen 395 --------------------EQPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYF-G----------------- 435 (519)
T ss_pred --------------------cCceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhh-c-----------------
Confidence 2334444554 666676666677778888877554443321 1
Q ss_pred eeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce--EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcC
Q 047837 430 GIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE--ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVK 507 (882)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~ 507 (882)
|... +..-+|-... ..++++|++|+.|+||+..
T Consensus 436 ---------------------------------hkq~~fiIrSCFgg~~------------~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 436 ---------------------------------HKQGHFIIRSCFGGGN------------DKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred ---------------------------------ccccceEEEeccCCCC------------cceEEecCCCceEEEEEcc
Confidence 1111 1111221111 1289999999999999998
Q ss_pred CCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCcc
Q 047837 508 RNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVE 551 (882)
Q Consensus 508 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~ 551 (882)
++ +++..+.||...|.+++|+| +..++|+++.||+|+||....
T Consensus 471 sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 471 SG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 87 89999999999999999999 667899999999999998763
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.5e-33 Score=257.98 Aligned_cols=275 Identities=20% Similarity=0.317 Sum_probs=227.1
Q ss_pred CCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe
Q 047837 310 IPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC 389 (882)
Q Consensus 310 ~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~ 389 (882)
...++|+.|. |+++++|..|++|++||..+.... ..+.||++.|.++++ +.+.|++|
T Consensus 197 skgVYClQYD-D~kiVSGlrDnTikiWD~n~~~c~---~~L~GHtGSVLCLqy-------------------d~rviisG 253 (499)
T KOG0281|consen 197 SKGVYCLQYD-DEKIVSGLRDNTIKIWDKNSLECL---KILTGHTGSVLCLQY-------------------DERVIVSG 253 (499)
T ss_pred CCceEEEEec-chhhhcccccCceEEeccccHHHH---HhhhcCCCcEEeeec-------------------cceEEEec
Confidence 3456677765 778899999999999999876443 356677666666654 56799999
Q ss_pred eCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEE
Q 047837 390 SADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILS 469 (882)
Q Consensus 390 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~ 469 (882)
+.|.+|++||+++++.+.. +-.|...|..
T Consensus 254 SSDsTvrvWDv~tge~l~t---------------------------------------------------lihHceaVLh 282 (499)
T KOG0281|consen 254 SSDSTVRVWDVNTGEPLNT---------------------------------------------------LIHHCEAVLH 282 (499)
T ss_pred CCCceEEEEeccCCchhhH---------------------------------------------------HhhhcceeEE
Confidence 9999999999999887643 3468888888
Q ss_pred EEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--eeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 047837 470 LSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--DLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVR 547 (882)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vw 547 (882)
+.|+.. ++++++.|.++.+||+.... .+.+.+.+|...|..+.| +.+++++++.|.+|++|
T Consensus 283 lrf~ng---------------~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 283 LRFSNG---------------YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 345 (499)
T ss_pred EEEeCC---------------EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEE
Confidence 888765 89999999999999998642 334567899999999999 67799999999999999
Q ss_pred eCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEE
Q 047837 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 548 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 627 (882)
++.+.+....+ . +|...|.|+.+ .++++++|+.|.+|++||+..|.+++.++ +|..-|.++.|. .+.+
T Consensus 346 ~~st~efvRtl-~-----gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe--GHEeLvRciRFd--~krI 413 (499)
T KOG0281|consen 346 STSTCEFVRTL-N-----GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRFD--NKRI 413 (499)
T ss_pred eccceeeehhh-h-----cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh--chHHhhhheeec--Ccee
Confidence 99977655443 2 23357777776 48899999999999999999999999998 999999999996 6789
Q ss_pred EEEeCCCcEEEEEccCCe---------EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 047837 628 VCSYSNKSICLYDFISGE---------MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
++|..||+|++||+.++. ++..+..|++.|..+.| |...+++++.|.+|.|||.-++.+-
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 999999999999998763 34556679999999999 6778999999999999998776544
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=248.94 Aligned_cols=287 Identities=22% Similarity=0.363 Sum_probs=240.1
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEE
Q 047837 34 QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIY 111 (882)
Q Consensus 34 ~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~ 111 (882)
..+.+.+|. +.|.|+++.|-..++|+|+. |++|+|||+++|++..+|.||...|..+++|+--.||++++ +.|+
T Consensus 143 l~rVi~gHl--gWVr~vavdP~n~wf~tgs~--DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 143 LYRVISGHL--GWVRSVAVDPGNEWFATGSA--DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred ehhhhhhcc--ceEEEEeeCCCceeEEecCC--CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 445678999 99999999999999999966 99999999999999999999999999999999999999999 9999
Q ss_pred EEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccc
Q 047837 112 LWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKES 190 (882)
Q Consensus 112 iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (882)
.||++..+.|+...+|- ..|.+++..|.-+.|++++. -++++||+.+... ...+.+|..+|
T Consensus 219 CwDLe~nkvIR~YhGHl--S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--------V~~l~GH~~~V-------- 280 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHL--SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--------VHVLSGHTNPV-------- 280 (460)
T ss_pred EEechhhhhHHHhcccc--ceeEEEeccccceeEEecCCcceEEEeeecccce--------EEEecCCCCcc--------
Confidence 99999999999888876 89999999999999999997 5799999987655 44566677666
Q ss_pred eEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeec
Q 047837 191 YFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDI 270 (882)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~ 270 (882)
..+.+.|-...+++|+.|++|++||+
T Consensus 281 ------------------------------------------------------~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 281 ------------------------------------------------------ASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred ------------------------------------------------------eeEEeecCCCceEEecCCceEEEeee
Confidence 66777787778999999999999998
Q ss_pred ccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeee
Q 047837 271 QSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVL 350 (882)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~ 350 (882)
..|+....+
T Consensus 307 ~agkt~~tl----------------------------------------------------------------------- 315 (460)
T KOG0285|consen 307 RAGKTMITL----------------------------------------------------------------------- 315 (460)
T ss_pred ccCceeEee-----------------------------------------------------------------------
Confidence 876543221
Q ss_pred ecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeee
Q 047837 351 VSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAG 430 (882)
Q Consensus 351 ~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (882)
..|...|.|++.+ |....+++++.| .|+-|++..+..+..
T Consensus 316 ----------------t~hkksvral~lh-P~e~~fASas~d-nik~w~~p~g~f~~n---------------------- 355 (460)
T KOG0285|consen 316 ----------------THHKKSVRALCLH-PKENLFASASPD-NIKQWKLPEGEFLQN---------------------- 355 (460)
T ss_pred ----------------ecccceeeEEecC-CchhhhhccCCc-cceeccCCccchhhc----------------------
Confidence 1256667777777 788889999987 699999987765432
Q ss_pred eeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc
Q 047837 431 IFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF 510 (882)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~ 510 (882)
+.+|++-|++++.+.++ ++++|+++|.+.+||.+++.
T Consensus 356 -----------------------------lsgh~~iintl~~nsD~--------------v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 356 -----------------------------LSGHNAIINTLSVNSDG--------------VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -----------------------------cccccceeeeeeeccCc--------------eEEEcCCceEEEEEecCcCc
Confidence 45788888998888887 69999999999999999863
Q ss_pred ee--EEEee-----cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 511 DL--IESID-----DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 511 ~~--~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
.. .+... .....|.+.+|...|..|+++..|.+|++|.-.
T Consensus 393 nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 393 NYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 22 21121 134678999999999999999999999999755
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=253.77 Aligned_cols=293 Identities=17% Similarity=0.251 Sum_probs=236.3
Q ss_pred ccCCCCCCcEEEeecCCCeEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 305 KLTPTIPNAIACQFSTSEKLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 305 ~~~~~~~~~~~~~~s~~~~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
.+..+...+.-+.|+++|++++. +.|.+..+|++..........++.+ |..+|.-+.|+ ||.
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg----------------h~~~V~yi~wS-PDd 281 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG----------------HSQPVSYIMWS-PDD 281 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec----------------ccCceEEEEEC-CCC
Confidence 34456677779999999997665 5599999999876554444444544 56667777787 899
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
++|++|+.|..+++||+.++.....+ -.++
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y--------------------------------------------------~~~~ 311 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLY--------------------------------------------------PSGL 311 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhc--------------------------------------------------ccCc
Confidence 99999999999999999998764322 1234
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC-CCCEEEEEEccCCCEEEEEeCCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH-SAAVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg 542 (882)
...+.+.+|.|++. .+++|+.|+.+..||+..+ .....++- ...|.+++.++||+++++.+.|.
T Consensus 312 ~~S~~sc~W~pDg~-------------~~V~Gs~dr~i~~wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGF-------------RFVTGSPDRTIIMWDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCCcceeEEccCCc-------------eeEecCCCCcEEEecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 56788899999998 8999999999999999754 33333332 25689999999999999999999
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
.|++++.++..... +...+ .+|+++.+|.|++++++.-.+..+++||++..+.++.+..+....-+..-||--
T Consensus 377 ~i~l~~~e~~~dr~-lise~------~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 377 KIRLYNREARVDRG-LISEE------QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred ceeeechhhhhhhc-ccccc------CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 99999988543322 22222 489999999999999999999999999999999999998433344455667765
Q ss_pred -CCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCC
Q 047837 623 -SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD-CKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 623 -dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~i~vwd~~~~ 686 (882)
+..++|+|++|+.|+||+..+|+++..+.||...|++++|+|. ..++|++|.||+||||.....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 5589999999999999999999999999999999999999995 468999999999999987654
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-32 Score=258.81 Aligned_cols=282 Identities=22% Similarity=0.314 Sum_probs=232.2
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeee
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVM 122 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~ 122 (882)
.+|..|.|.|+|+.|.+|+. .|.+.+|+..+...-..+..|..+|+++.||++|.+++|++ |.|++|+..-... .
T Consensus 97 c~V~~v~WtPeGRRLltgs~--SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k 173 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQ--SGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-K 173 (464)
T ss_pred cceeeEEEcCCCceeEeecc--cccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-H
Confidence 57999999999999999976 88999999865555455778999999999999999999999 9999999654433 3
Q ss_pred eeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccc
Q 047837 123 KLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWT 201 (882)
Q Consensus 123 ~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 201 (882)
.+..| +...|.+++|+|+...+++|++ ++|+|||...... ...+.+|+..+
T Consensus 174 ~~~ah-h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke--------e~vL~GHgwdV------------------- 225 (464)
T KOG0284|consen 174 IIQAH-HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--------ERVLRGHGWDV------------------- 225 (464)
T ss_pred HhhHh-hhhhhheeccCCCCceeEEecCCCeEEEEeccCCch--------hheeccCCCCc-------------------
Confidence 34433 2389999999998788888876 8999999875544 23344555544
Q ss_pred cCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccc
Q 047837 202 DNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHY 281 (882)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 281 (882)
.++.|+|...+||+|+.|..|++||.+++.++.++.
T Consensus 226 -------------------------------------------ksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh- 261 (464)
T KOG0284|consen 226 -------------------------------------------KSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH- 261 (464)
T ss_pred -------------------------------------------ceeccCCccceeEEccCCceeEeecCCCcchhhhhh-
Confidence 889999999999999999999999999887775442
Q ss_pred cCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeec
Q 047837 282 SEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIK 361 (882)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~ 361 (882)
T Consensus 262 -------------------------------------------------------------------------------- 261 (464)
T KOG0284|consen 262 -------------------------------------------------------------------------------- 261 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeec
Q 047837 362 NLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSV 441 (882)
Q Consensus 362 ~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (882)
+|+..|..+.|+ +++++|+|++.|..++++|+++-+++.
T Consensus 262 ------~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~---------------------------------- 300 (464)
T KOG0284|consen 262 ------GHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELF---------------------------------- 300 (464)
T ss_pred ------hccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHH----------------------------------
Confidence 355666666676 788999999999999999999665543
Q ss_pred cccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCC
Q 047837 442 STQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSA 521 (882)
Q Consensus 442 ~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~ 521 (882)
.+.+|...|+++.|+|-.+ .++.+|+.||.|..|.+.........-.+|..
T Consensus 301 -----------------~~r~Hkkdv~~~~WhP~~~------------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 301 -----------------TYRGHKKDVTSLTWHPLNE------------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred -----------------Hhhcchhhheeeccccccc------------cceeeccCCCceEEEeccccccccCCCccccc
Confidence 3568999999999999776 38999999999999999854344555568999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeCcc
Q 047837 522 AVTAVKFTCNGRKILSCSADRSLVVRDVVE 551 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~ 551 (882)
.|.+++|+|-|..|++|+.|.++++|.-..
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeeccCC
Confidence 999999999999999999999999998653
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.1e-30 Score=231.26 Aligned_cols=288 Identities=18% Similarity=0.309 Sum_probs=227.5
Q ss_pred CCCCCcEEEeecCC-CeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 308 PTIPNAIACQFSTS-EKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 308 ~~~~~~~~~~~s~~-~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
++...+..++|+|. |.+++ ++.|+.|++|+...+.......++ ..+|+..|..++|+ |.|++
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl---------------d~~hkrsVRsvAws-p~g~~ 75 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL---------------DDGHKRSVRSVAWS-PHGRY 75 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec---------------cccchheeeeeeec-CCCcE
Confidence 44556778999999 77554 566999999999753221111111 13588888899998 89999
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
|++++.|.++.+|.-..+.. .+ .-.+.+|..
T Consensus 76 La~aSFD~t~~Iw~k~~~ef-----------------------------------------ec--------v~~lEGHEn 106 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEF-----------------------------------------EC--------VATLEGHEN 106 (312)
T ss_pred EEEeeccceEEEeecCCCce-----------------------------------------eE--------Eeeeecccc
Confidence 99999999999998664331 11 224789999
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC--CceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCe
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR--NFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRS 543 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 543 (882)
.|.+++|++++. +||+++.|+.|.||.+.. .+.+...++.|...|..+.|+|...+|++++.|.+
T Consensus 107 EVK~Vaws~sG~-------------~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 107 EVKCVAWSASGN-------------YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred ceeEEEEcCCCC-------------EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe
Confidence 999999999998 999999999999999984 56788899999999999999999999999999999
Q ss_pred EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCC
Q 047837 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPS 623 (882)
Q Consensus 544 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spd 623 (882)
|++|+-... ..... .....+|...|.+++|++.|..|++++.|++++||-..+ .+. ..|...++.+.|.
T Consensus 174 Ik~~~~~~d-ddW~c--~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~-~~~sr~~Y~v~W~-- 242 (312)
T KOG0645|consen 174 IKVYRDEDD-DDWEC--VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLS-GMHSRALYDVPWD-- 242 (312)
T ss_pred EEEEeecCC-CCeeE--EEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccc-hhcccceEeeeec--
Confidence 999987632 11111 112234457999999999999999999999999998652 122 2577889999998
Q ss_pred CCEEEEEeCCCcEEEEEccCC------eEEE-EEccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCC
Q 047837 624 GSYLVCSYSNKSICLYDFISG------EMVA-KAMGHGEVITGVTFLPD-CKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 624 g~~l~~~~~dg~i~iwd~~~~------~~~~-~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~i~vwd~~ 684 (882)
...||+++.|+.|++|.-..+ +++. .-..|...|+++.|.|. ..+|++++.||.|++|.+.
T Consensus 243 ~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 558999999999999986543 1222 23458899999999995 6799999999999999874
No 50
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.8e-27 Score=240.27 Aligned_cols=546 Identities=13% Similarity=0.118 Sum_probs=366.9
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCc-eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSST-QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS 82 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~-~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~ 82 (882)
.++||+-+++...+.-+++.|.|||+..+- +..++.++.. +.|.+++|++.++++-+| .+|.|.-||+.+++++.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-rsIE~L~W~e~~RLFS~g---~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED-RSIESLAWAEGGRLFSSG---LSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC-CceeeEEEccCCeEEeec---CCceEEEEecccCceeE
Confidence 457888887766666778999999998765 4456777665 899999999777766654 48899999999999999
Q ss_pred EeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcc
Q 047837 83 ELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIG 159 (882)
Q Consensus 83 ~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~ 159 (882)
.+....+.|.+++.+|.+..|+.++ |.++.++...++...........++|.+++|+|++..|++|+. |.|++||..
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 9999999999999999999998886 9999999999988877665554589999999999998888875 679999998
Q ss_pred cCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
.+.... .+...+ -.+......
T Consensus 185 ~~~t~~-----------~~~~~~-----------------------------------d~l~k~~~~------------- 205 (691)
T KOG2048|consen 185 SGQTLH-----------IITMQL-----------------------------------DRLSKREPT------------- 205 (691)
T ss_pred CCceEE-----------Eeeecc-----------------------------------cccccCCce-------------
Confidence 776511 000000 000000011
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
.+.++.|-.++ .|++|...|+|.+||...+..+..+. .+..++.+++..
T Consensus 206 ---iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---------------------------~h~adVl~Lav~ 254 (691)
T KOG2048|consen 206 ---IVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---------------------------CHDADVLALAVA 254 (691)
T ss_pred ---EEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---------------------------hhhcceeEEEEc
Confidence 12456666544 69999999999999999988776553 466778899999
Q ss_pred CCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 320 TSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 320 ~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
+++ ++++++.|+.|..+...+.... .|.. .....|...|.+++.. +..+++|+.|.++.+=
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~-----------wv~~----~~r~~h~hdvrs~av~---~~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSE-----------WVIN----SRRDLHAHDVRSMAVI---ENALISGGRDFTLAIC 316 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccc-----------eeee----ccccCCcccceeeeee---cceEEecceeeEEEEc
Confidence 985 5777888999998887655331 1110 1124578888888887 3389999999988876
Q ss_pred ecCCCceee---ecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCC---CC------EEEeeeccce
Q 047837 399 DLALQSELS---KDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSR---GS------TLLLDAHDAE 466 (882)
Q Consensus 399 d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~------~~~~~~~~~~ 466 (882)
.....+... .....+.. .+.... ...+.+......+..+..... |. ..........
T Consensus 317 ~s~~~~~~~h~~~~~~p~~~----------~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~n 384 (691)
T KOG2048|consen 317 SSREFKNMDHRQKNLFPASD----------RVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKEN 384 (691)
T ss_pred cccccCchhhhccccccccc----------eeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccc
Confidence 655422111 00111111 010000 000001111111111111111 00 0122234456
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEE---EeecCCCCEEEEEEccCCCEEEEEe-CC
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIE---SIDDHSAAVTAVKFTCNGRKILSCS-AD 541 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~-~d 541 (882)
|.+.+.+|+++ +++.+.- ..++||.++... ..+. ......-....+.|+-|+..++.++ .+
T Consensus 385 Is~~aiSPdg~-------------~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~ 450 (691)
T KOG2048|consen 385 ISCAAISPDGN-------------LIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI 450 (691)
T ss_pred eeeeccCCCCC-------------EEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccc
Confidence 77888888887 7777654 468888887532 1111 1222334577888998998888887 67
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
..+.+++..+........... ......|..++.+|+|+++|+.+.++.|.+|++++++...... .-...++.++|+
T Consensus 451 ~~le~~el~~ps~kel~~~~~--~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~ 526 (691)
T KOG2048|consen 451 FSLEEFELETPSFKELKSIQS--QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFS 526 (691)
T ss_pred ceeEEEEecCcchhhhhcccc--ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh--ccCcceeeeecc
Confidence 778888877543322221111 1344689999999999999999999999999999877655443 334789999999
Q ss_pred C-CCCEEEEEeCCCcEEEEEccCCeE-----------EEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 047837 622 P-SGSYLVCSYSNKSICLYDFISGEM-----------VAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 622 p-dg~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
| +...|+.+..+++++-||++..+. -..+......+..+.|+|.....+..-..+.+.+.|.....+.
T Consensus 527 ~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~~~lp~ 606 (691)
T KOG2048|consen 527 PFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFSLPLPS 606 (691)
T ss_pred ccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecCCCCCc
Confidence 5 667889999999999999943221 1112223457888999877665555555567777777665554
Q ss_pred cc
Q 047837 690 RN 691 (882)
Q Consensus 690 ~~ 691 (882)
..
T Consensus 607 ~~ 608 (691)
T KOG2048|consen 607 DE 608 (691)
T ss_pred hh
Confidence 43
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2e-30 Score=229.46 Aligned_cols=281 Identities=15% Similarity=0.304 Sum_probs=237.0
Q ss_pred CCCCCCcEEEeecCCCeE-EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 307 TPTIPNAIACQFSTSEKL-VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 307 ~~~~~~~~~~~~s~~~~l-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
..+.+.+.++.|+-||++ ++++.|.+|++|++..+. .+..+.+|...|.++.. + .|...
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~----------------s-~Dnsk 73 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAAL----------------S-SDNSK 73 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc---eeeeecCCCceeeeccc----------------c-ccccc
Confidence 356667789999999985 567779999999998774 44567788777776654 2 67888
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
|++|+.|..+.+||+.+++..++ +.+|.+
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------------------~rgH~a 102 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVDRR---------------------------------------------------FRGHLA 102 (307)
T ss_pred cccCCCCceEEEEEcccCeeeee---------------------------------------------------cccccc
Confidence 99999999999999999987654 679999
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC-CceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR-NFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
.|+.+.|+.+.. .+++|+.|.++++||.++ ..++++.+....+.|.++.. .+..|+.|+.||++
T Consensus 103 qVNtV~fNeesS-------------Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 103 QVNTVRFNEESS-------------VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTV 167 (307)
T ss_pred eeeEEEecCcce-------------EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcE
Confidence 999999999988 999999999999999987 45778888888999999998 56789999999999
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG 624 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg 624 (882)
+.||++.+....... ..+|+++.|++|++..+.++.|+++++.|-.+|+++..++.+.....-..++++...
T Consensus 168 RtydiR~G~l~sDy~--------g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYF--------GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred EEEEeecceeehhhc--------CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 999999665432221 248999999999999999999999999999999999999944444445567888888
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEEccCCCC-eEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 625 SYLVCSYSNKSICLYDFISGEMVAKAMGHGEV-ITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 625 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
..+++|++||.|++||+.....+..+..|... |.++.++|.-..|+++...+ +..|.
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence 99999999999999999999999999988887 89999999988888777544 45554
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.5e-31 Score=261.51 Aligned_cols=292 Identities=17% Similarity=0.311 Sum_probs=238.7
Q ss_pred ceEEEEEecCCCCCeEEEEEcC-CCCEEEEeecCCCCeEEEEECCC-ceeeEEeeccccceeEEEECCCCCEEEEEc--C
Q 047837 33 TQSHLMVSHRMPKPLCCVAMSR-DGRYVAAGESGPQPAVLVWDCAN-LAFISELKGHLYGVECIAFSPDGEHLVTVG--G 108 (882)
Q Consensus 33 ~~~~~l~~h~~~~~I~~va~sp-dg~~la~g~~~~d~~I~vwd~~t-~~~~~~l~~h~~~V~~lafspdg~~Las~~--~ 108 (882)
+.++.+.||. ..|+++.|.| .+.+|++++. |+.|+||++-. +++++++.||..+|..++|+++|..+++++ +
T Consensus 205 k~~~~~~gH~--kgvsai~~fp~~~hLlLS~gm--D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLSGHT--KGVSAIQWFPKKGHLLLSGGM--DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred hheeeccCCc--cccchhhhccceeeEEEecCC--CceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 5667888999 8999999999 8999999955 99999999886 999999999999999999999999999999 9
Q ss_pred EEEEEEcCcceeeeeeecCCcccceeEEEEccCC-CEEEEEC-CCcEEEEEcccCccceeccccCccceeecCccccccc
Q 047837 109 YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDA-KFIVTAG-KKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGI 186 (882)
Q Consensus 109 ~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 186 (882)
.|++||+++|+++.++... ..++++.|.||+ +.+++++ ++.|+.||+.+++.+ +....|
T Consensus 281 ~lKlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv--------qeYd~h-------- 341 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLD---KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV--------QEYDRH-------- 341 (503)
T ss_pred eeeeeccccceEEEEEecC---CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH--------HHHHhh--------
Confidence 9999999999999999876 689999999988 5555554 589999999988762 222222
Q ss_pred cccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEE
Q 047837 187 QKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVH 266 (882)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~ 266 (882)
+..+..+.|-++|+++++.+.|+.++
T Consensus 342 ------------------------------------------------------Lg~i~~i~F~~~g~rFissSDdks~r 367 (503)
T KOG0282|consen 342 ------------------------------------------------------LGAILDITFVDEGRRFISSSDDKSVR 367 (503)
T ss_pred ------------------------------------------------------hhheeeeEEccCCceEeeeccCccEE
Confidence 23347899999999999999999999
Q ss_pred eeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeC-CceEEEEEcccccccc
Q 047837 267 LFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEAT 345 (882)
Q Consensus 267 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~ 345 (882)
||+......+..+.. +..-..-++...|++..+++-. |+.|.++.+...-...
T Consensus 368 iWe~~~~v~ik~i~~--------------------------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 368 IWENRIPVPIKNIAD--------------------------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred EEEcCCCccchhhcc--------------------------hhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 999887655443321 1112233788899999777755 9999999987665555
Q ss_pred eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcc
Q 047837 346 RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH 425 (882)
Q Consensus 346 ~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (882)
+...+.||...=++ ..+.|+ +||.+|++|..||.+.+||..+.+.+.+
T Consensus 422 kkK~feGh~vaGys--------------~~v~fS-pDG~~l~SGdsdG~v~~wdwkt~kl~~~----------------- 469 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYS--------------CQVDFS-PDGRTLCSGDSDGKVNFWDWKTTKLVSK----------------- 469 (503)
T ss_pred HhhhhcceeccCce--------------eeEEEc-CCCCeEEeecCCccEEEeechhhhhhhc-----------------
Confidence 55567777653333 336677 8999999999999999999998776543
Q ss_pred eEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEE
Q 047837 426 LVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYD 505 (882)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd 505 (882)
+.+|+..+..+.|+|... ..+|+++.||.|++|+
T Consensus 470 ----------------------------------lkah~~~ci~v~wHP~e~------------Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 ----------------------------------LKAHDQPCIGVDWHPVEP------------SKVATCGWDGLIKIWD 503 (503)
T ss_pred ----------------------------------cccCCcceEEEEecCCCc------------ceeEecccCceeEecC
Confidence 568999999999999876 3799999999999996
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=3.5e-30 Score=236.71 Aligned_cols=292 Identities=19% Similarity=0.312 Sum_probs=229.9
Q ss_pred eeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeeccc
Q 047837 122 MKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATW 200 (882)
Q Consensus 122 ~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 200 (882)
..+.+|+ +.|..+.|+|+|..|+++|. ..|.+|++..... ....+.+|...|
T Consensus 41 m~l~gh~--geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-------N~~~lkgHsgAV------------------ 93 (338)
T KOG0265|consen 41 MLLPGHK--GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-------NFWVLKGHSGAV------------------ 93 (338)
T ss_pred hhcCCCc--ceEEEEEECCCCCeEeecCCcceEEEEecccccc-------ceeeecccccee------------------
Confidence 3455555 99999999999999999986 6899999754433 122233444443
Q ss_pred ccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceeccccc
Q 047837 201 TDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLH 280 (882)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 280 (882)
..+.|.+|+..|++++.|.+|+.||.++|+.+.+++
T Consensus 94 --------------------------------------------M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 94 --------------------------------------------MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred --------------------------------------------EeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 788999999999999999999999999988765542
Q ss_pred ccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeee
Q 047837 281 YSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDI 360 (882)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i 360 (882)
+|...|..+
T Consensus 130 -----------------------------------------------------------------------~h~~~vNs~ 138 (338)
T KOG0265|consen 130 -----------------------------------------------------------------------GHTSFVNSL 138 (338)
T ss_pred -----------------------------------------------------------------------cccceeeec
Confidence 333333333
Q ss_pred cccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeee
Q 047837 361 KNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETS 440 (882)
Q Consensus 361 ~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (882)
.. +.....++.+++.||++++||++....+..+
T Consensus 139 ~p----------------~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------------------------------- 171 (338)
T KOG0265|consen 139 DP----------------SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------------------------------- 171 (338)
T ss_pred Cc----------------cccCCeEEEecCCCceEEEEeecccchhhcc-------------------------------
Confidence 21 1134567889999999999999976654321
Q ss_pred ccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCC
Q 047837 441 VSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHS 520 (882)
Q Consensus 441 ~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~ 520 (882)
.....++++.|...+. .+.+|+-|+.|++||++.+ ....++.+|.
T Consensus 172 ---------------------~~kyqltAv~f~d~s~-------------qv~sggIdn~ikvWd~r~~-d~~~~lsGh~ 216 (338)
T KOG0265|consen 172 ---------------------ENKYQLTAVGFKDTSD-------------QVISGGIDNDIKVWDLRKN-DGLYTLSGHA 216 (338)
T ss_pred ---------------------ccceeEEEEEeccccc-------------ceeeccccCceeeeccccC-cceEEeeccc
Confidence 2234567778877776 7999999999999999887 7889999999
Q ss_pred CCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce---eeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 047837 521 AAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY---KISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSI 597 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~ 597 (882)
+.|+.+..+|+|.++.+-+.|.++++||++...... .++..+. ..-+.....++|+|+++.+..|+.|+.+++||.
T Consensus 217 DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~-hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 217 DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI-HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch-hhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 999999999999999999999999999998543332 2332221 112235667899999999999999999999999
Q ss_pred cCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 598 AAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 598 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
.....+..+. +|.+.|.+++|+|...+|.+++.|++|++=+
T Consensus 296 ~~r~~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 296 TSRRILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccccEEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9989999998 9999999999999999999999999998743
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4e-30 Score=278.41 Aligned_cols=288 Identities=22% Similarity=0.376 Sum_probs=241.7
Q ss_pred CCCcEEEeecCCCeEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 310 IPNAIACQFSTSEKLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 310 ~~~~~~~~~s~~~~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
...+.++.|+++|+.++. +.++.+++|+...... ..... +.+|...|..++|+ +++.++++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~----------------l~~h~~~v~~~~fs-~d~~~l~s 220 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRE----------------LSGHTRGVSDVAFS-PDGSYLLS 220 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhcc----------------ccccccceeeeEEC-CCCcEEEE
Confidence 566778999999986665 4699999999955431 11111 24577788888888 89999999
Q ss_pred eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 389 CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
++.|++|++||+...... ...+.+|...|+
T Consensus 221 ~s~D~tiriwd~~~~~~~--------------------------------------------------~~~l~gH~~~v~ 250 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDDGRN--------------------------------------------------LKTLKGHSTYVT 250 (456)
T ss_pred ecCCceEEEeeccCCCeE--------------------------------------------------EEEecCCCCceE
Confidence 999999999999433211 234669999999
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
+++|+|.++ ++++|+.|++|+|||++++ ++...+.+|...|++++|++++++|++++.|+.|++||
T Consensus 251 ~~~f~p~g~-------------~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 251 SVAFSPDGN-------------LLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEecCCCC-------------EEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999997 9999999999999999986 89999999999999999999999999999999999999
Q ss_pred CccCccc-eeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCC---cEEEEECCCC
Q 047837 549 VVETNSA-YKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGD---PMKVTVDPSG 624 (882)
Q Consensus 549 ~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---v~~~~~spdg 624 (882)
+.++... ......+. ... .++.+.|+|++.+++++..|+.+++||+..++.+..+. +|... +.+..+++.+
T Consensus 317 ~~~~~~~~~~~~~~~~--~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAE--NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT--GHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred CCCCceeeeecccCCC--CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec--ccCCcceeEecccccCCC
Confidence 9977632 22222221 111 68999999999999999999999999999999999998 55553 4455567899
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEEccC-CCCeEEEEECCCCCEEEEEe--CCCeEEEEeCC
Q 047837 625 SYLVCSYSNKSICLYDFISGEMVAKAMGH-GEVITGVTFLPDCKHIVSVG--GDGLQRVKEKY 684 (882)
Q Consensus 625 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~--~dg~i~vwd~~ 684 (882)
+++++|+.|+.|++||..++..+..+.+| ...+..+.+++...++++++ .|+.+++|...
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999999999999999 89999999999999999998 79999999754
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.8e-31 Score=259.67 Aligned_cols=288 Identities=22% Similarity=0.316 Sum_probs=233.7
Q ss_pred cCCCCCCcEEEeecC-CCeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 306 LTPTIPNAIACQFST-SEKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~-~~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
+.+|...+.++.|.| .+.|+. ++.|+.|+||++.... ..++++. +|..+|..++|+ .+|
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~----------------gH~k~Vrd~~~s-~~g 270 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFK----------------GHRKPVRDASFN-NCG 270 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhh----------------cchhhhhhhhcc-ccC
Confidence 445666667888888 677554 5669999999997632 2223444 455666666676 899
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
..|++++.|+.|++||+++++++.++..
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~~---------------------------------------------------- 298 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFHL---------------------------------------------------- 298 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEec----------------------------------------------------
Confidence 9999999999999999999988755322
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCe
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRS 543 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 543 (882)
+..++|+.|+|+++ +.+++|+.|+.|+.||++++ +.++.+..|-+.|..+.|-++|+++++.+.|++
T Consensus 299 ~~~~~cvkf~pd~~------------n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQ------------NIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred CCCceeeecCCCCC------------cEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 33467788888874 38999999999999999998 788888899999999999999999999999999
Q ss_pred EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc---eEEEEEeccCCCCcEEEEE
Q 047837 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK---LIRSFKQAKDFGDPMKVTV 620 (882)
Q Consensus 544 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~ 620 (882)
++||+.+..-.......... ....++..+|++.+++.=+.|..|.+|.+...- ..+.++.+.-.+....+.|
T Consensus 366 ~riWe~~~~v~ik~i~~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred EEEEEcCCCccchhhcchhh-----ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 99999986544433333222 467889999999999999999999999975432 2334553334566788999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEe
Q 047837 621 DPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDC-KHIVSVGGDGLQRVKE 682 (882)
Q Consensus 621 spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~i~vwd 682 (882)
||||++|++|+.||.+.+||.++-+++..+++|.+++..+.|+|.. ..+||++.||.|++||
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999954 5799999999999996
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=7.2e-29 Score=258.04 Aligned_cols=282 Identities=26% Similarity=0.429 Sum_probs=236.5
Q ss_pred CCCCCcEEEeecCCCeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 308 PTIPNAIACQFSTSEKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
.+...+.++.|+|++++++ ++.++.+++|++.+.+. ...+.. |...+..+.|. ++++.+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---~~~~~~----------------~~~~i~~~~~~-~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---LRTLKG----------------HTGPVRDVAAS-ADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---EEEEec----------------CCcceeEEEEC-CCCCEE
Confidence 4556678999999987555 55599999999986542 122333 44555666776 777899
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
++++.||.|++|++..++... .+..|...
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---------------------------------------------------~~~~~~~~ 95 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---------------------------------------------------TLTGHTSY 95 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---------------------------------------------------EEeccCCc
Confidence 999999999999998653321 23467778
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
|.++.|++++. ++++++.++.+.+||+.+. +....+..|...|.+++|+|++.++++++.|+.|++
T Consensus 96 i~~~~~~~~~~-------------~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 96 VSSVAFSPDGR-------------ILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred EEEEEEcCCCC-------------EEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 99999999876 8888888999999999865 667777889999999999999999998888999999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCE
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
||+...+....+. .+...+.++.|+|+++.+++++.|+.|++||+.+++.+..+. .|...+.+++|+|++.+
T Consensus 162 ~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 162 WDLRTGKCVATLT------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYL 233 (289)
T ss_pred EEccccccceeEe------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh--hcCCceEEEEEcCCCcE
Confidence 9998655444332 334689999999999999999999999999999999888886 67789999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 627 LVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
+++++.||.|++||+.+++.+..+..|...|.+++|++++++|++++.|+.+++|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99998899999999999999999999999999999999999999999999999996
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.8e-29 Score=291.29 Aligned_cols=290 Identities=15% Similarity=0.243 Sum_probs=227.4
Q ss_pred CCCCCcEEEeecCCCeEE-EEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 308 PTIPNAIACQFSTSEKLV-VVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
.+...+.+++|+|+|+++ +++.|+.|++|+......... ..| ..+..+ .+...|.+++|++..+.+|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----~~~-~~~~~~-------~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----DIH-YPVVEL-------ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----ccc-cceEEe-------cccCceeeEEeccCCCCEE
Confidence 355667799999999855 566799999999854211000 000 011111 1345788899987778899
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
++++.||+|++||+.+++.+. .+.+|.+.
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---------------------------------------------------~~~~H~~~ 577 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---------------------------------------------------EMKEHEKR 577 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---------------------------------------------------EecCCCCC
Confidence 999999999999998765432 24579999
Q ss_pred EEEEEEec-CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc-cCCCEEEEEeCCCeE
Q 047837 467 ILSLSFSL-SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT-CNGRKILSCSADRSL 544 (882)
Q Consensus 467 v~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i 544 (882)
|.+++|+| ++. +|++|+.|+.|++||+.++ ..+..+..+ ..|.++.|+ +++.+|++|+.|+.|
T Consensus 578 V~~l~~~p~~~~-------------~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I 642 (793)
T PLN00181 578 VWSIDYSSADPT-------------LLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKV 642 (793)
T ss_pred EEEEEEcCCCCC-------------EEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeE
Confidence 99999997 555 8999999999999999876 566666644 679999995 479999999999999
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC------ceEEEEEeccCCCCcEEE
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG------KLIRSFKQAKDFGDPMKV 618 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~v~~~ 618 (882)
++||++......... .+|...|.++.|. ++.+|++++.|++|++||+..+ +.+..+. +|...+..+
T Consensus 643 ~iwD~~~~~~~~~~~-----~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v 714 (793)
T PLN00181 643 YYYDLRNPKLPLCTM-----IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFV 714 (793)
T ss_pred EEEECCCCCccceEe-----cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEE
Confidence 999998654322222 3455789999997 6889999999999999999743 5677776 888999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCeEEEEE-------------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 619 TVDPSGSYLVCSYSNKSICLYDFISGEMVAKA-------------MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 619 ~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
+|+|++.+||+|+.|+.|++|+.....++..+ ..|...|.+++|++++.+|++++.||.|+|||+
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999999999998765443222 234567999999999999999999999999986
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.2e-31 Score=247.51 Aligned_cols=239 Identities=25% Similarity=0.431 Sum_probs=208.4
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
....|.|+.+ |...+++|..|.+|++||..+.....
T Consensus 196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~----------------------------------------- 231 (499)
T KOG0281|consen 196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLK----------------------------------------- 231 (499)
T ss_pred cCCceEEEEe---cchhhhcccccCceEEeccccHHHHH-----------------------------------------
Confidence 3566777776 46679999999999999998765543
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
.+.+|.+.|.|+.|... .+++|+.|.+|++||++++ +++.++.+|...|..+.|
T Consensus 232 ----------~L~GHtGSVLCLqyd~r---------------viisGSSDsTvrvWDv~tg-e~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 232 ----------ILTGHTGSVLCLQYDER---------------VIVSGSSDSTVRVWDVNTG-EPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred ----------hhhcCCCcEEeeeccce---------------EEEecCCCceEEEEeccCC-chhhHHhhhcceeEEEEE
Confidence 35699999999998754 7999999999999999998 899999999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ 608 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 608 (882)
+ ..++++++.|.+|.+||+..... ....+...+|...|+.+.|+ .+++++++.|.+|++|++.++++++++.
T Consensus 286 ~--ng~mvtcSkDrsiaVWdm~sps~---it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~- 357 (499)
T KOG0281|consen 286 S--NGYMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN- 357 (499)
T ss_pred e--CCEEEEecCCceeEEEeccCchH---HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-
Confidence 6 45999999999999999985542 22233445666899999986 4699999999999999999999999998
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 609 AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 609 ~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
+|...|.++.+. |+++++|+.|.+|++||+..|.++..++||..-|.++.| |.+.+++|+.||.|++||+.....
T Consensus 358 -gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 358 -GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred -cccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence 999999988875 899999999999999999999999999999999999999 678999999999999999987766
Q ss_pred Cc
Q 047837 689 PR 690 (882)
Q Consensus 689 ~~ 690 (882)
++
T Consensus 433 pr 434 (499)
T KOG0281|consen 433 PR 434 (499)
T ss_pred Cc
Confidence 63
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=8e-29 Score=257.69 Aligned_cols=284 Identities=30% Similarity=0.522 Sum_probs=229.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEE
Q 047837 36 HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLW 113 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iW 113 (882)
+.+.+|. ++|++++|+|++++|++++. ++.|++|++.+++....+.+|...+..+.|+|++++|++++ +.|++|
T Consensus 3 ~~~~~h~--~~i~~~~~~~~~~~l~~~~~--~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 3 RTLKGHT--GGVTCVAFSPDGKLLATGSG--DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred hHhcccC--CCEEEEEEcCCCCEEEEeec--CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 4566888 89999999999999999965 88999999999998899999999999999999999999988 999999
Q ss_pred EcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC-CCcEEEEEcccCccceeccccCccceeecCccccccccccceE
Q 047837 114 NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYF 192 (882)
Q Consensus 114 d~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 192 (882)
|+.+++.+..+..+. ..+.++.|+++++++++++ ++.+.+|++.+++.. ..+..|.
T Consensus 79 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~------------- 135 (289)
T cd00200 79 DLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL--------TTLRGHT------------- 135 (289)
T ss_pred EcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE--------EEeccCC-------------
Confidence 999988888888775 7899999999999999998 689999999754430 0011111
Q ss_pred EEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeeccc
Q 047837 193 VSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQS 272 (882)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 272 (882)
..+.+++|+|++.++++++.+|.|++||+.+
T Consensus 136 -------------------------------------------------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 136 -------------------------------------------------DWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred -------------------------------------------------CcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 1237788888888888777788888888764
Q ss_pred ceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeec
Q 047837 273 LKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVS 352 (882)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~ 352 (882)
++.... +.
T Consensus 167 ~~~~~~-----------------------------------------------------------------------~~- 174 (289)
T cd00200 167 GKCVAT-----------------------------------------------------------------------LT- 174 (289)
T ss_pred ccccee-----------------------------------------------------------------------Ee-
Confidence 432211 11
Q ss_pred CcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeee
Q 047837 353 HSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIF 432 (882)
Q Consensus 353 ~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (882)
.|...+.++.|+ ++++.+++++.|+.|++||+..++....
T Consensus 175 ---------------~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~------------------------ 214 (289)
T cd00200 175 ---------------GHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGT------------------------ 214 (289)
T ss_pred ---------------cCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecc------------------------
Confidence 134456667776 7777888888899999999986544321
Q ss_pred eeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee
Q 047837 433 ERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL 512 (882)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~ 512 (882)
+..|...+.++.|++++. ++++++.++.|++||+.++ ..
T Consensus 215 ---------------------------~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~i~i~~~~~~-~~ 253 (289)
T cd00200 215 ---------------------------LRGHENGVNSVAFSPDGY-------------LLASGSEDGTIRVWDLRTG-EC 253 (289)
T ss_pred ---------------------------hhhcCCceEEEEEcCCCc-------------EEEEEcCCCcEEEEEcCCc-ee
Confidence 225667888899998866 7888888999999999876 67
Q ss_pred EEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 513 IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 513 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
...+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 777888999999999999999999999999999996
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=231.73 Aligned_cols=283 Identities=17% Similarity=0.275 Sum_probs=238.7
Q ss_pred CCcEEEeec---CCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 311 PNAIACQFS---TSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 311 ~~~~~~~~s---~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
.++..++|+ |+|. |++++.|+.-.+-+-+++.- +-++.||.+.||+... + .+...-
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw---igtfeghkgavw~~~l----------------~-~na~~a 74 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW---IGTFEGHKGAVWSATL----------------N-KNATRA 74 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc---EEeeeccCcceeeeec----------------C-chhhhh
Confidence 345578887 4676 55567788877766666543 3467888888887664 1 456667
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
++++.|=+-++||.-++.++..+ .|..-
T Consensus 75 asaaadftakvw~a~tgdelhsf----------------------------------------------------~hkhi 102 (334)
T KOG0278|consen 75 ASAAADFTAKVWDAVTGDELHSF----------------------------------------------------EHKHI 102 (334)
T ss_pred hhhcccchhhhhhhhhhhhhhhh----------------------------------------------------hhhhe
Confidence 88999999999999988776432 46667
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
|.+++|+.+.+ +|++|+.+..++|||++....+...+.+|++.|..+.|....+.+++++.|++|++
T Consensus 103 vk~~af~~ds~-------------~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL 169 (334)
T KOG0278|consen 103 VKAVAFSQDSN-------------YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL 169 (334)
T ss_pred eeeEEecccch-------------hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence 88888888887 89999999999999999877788899999999999999998899999999999999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCE
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
||.+++.....+...+ +|+++.++++|++|.++ ..+.|.+||..+..+++.++ -...|.+..++|+..+
T Consensus 170 WD~rTgt~v~sL~~~s-------~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k---~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 170 WDHRTGTEVQSLEFNS-------PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK---MPCNVESASLHPKKEF 238 (334)
T ss_pred EEeccCcEEEEEecCC-------CCcceeeccCCCEEEEe-cCceeEEeccccccceeecc---CccccccccccCCCce
Confidence 9999988777765544 89999999999987775 55789999999999998885 5567999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEE-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 047837 627 LVCSYSNKSICLYDFISGEMVAKA-MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
+++|+.|..++.||..+|+.+..+ ++|.++|.++.|+|||...++|+.||+|++|...-.+..
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999999999999999999998886 899999999999999999999999999999998655544
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=240.30 Aligned_cols=292 Identities=21% Similarity=0.347 Sum_probs=250.1
Q ss_pred eeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 242 KVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 242 ~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
..+.|..|+|||++|++|+.||.|.+|+..+|+....+++. .+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-------------------------------------Aq 256 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-------------------------------------AQ 256 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh-------------------------------------hh
Confidence 34578899999999999999999999999988765444310 00
Q ss_pred CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC
Q 047837 322 EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 322 ~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~ 401 (882)
+. +-.++..|.|+.|+ .|...+++|+.||.|++|.+.
T Consensus 257 d~------------------------------------------fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 257 DN------------------------------------------FMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cc------------------------------------------eeecccceEEEeec-ccHHHhhccCcCCcEEEEEEe
Confidence 00 12357788889998 899999999999999999999
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcc
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDV 481 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 481 (882)
++.+++++. .+|...|+++.|+.++.
T Consensus 294 tG~ClRrFd--------------------------------------------------rAHtkGvt~l~FSrD~S---- 319 (508)
T KOG0275|consen 294 TGQCLRRFD--------------------------------------------------RAHTKGVTCLSFSRDNS---- 319 (508)
T ss_pred cchHHHHhh--------------------------------------------------hhhccCeeEEEEccCcc----
Confidence 999887632 37888999999999887
Q ss_pred ceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeecc
Q 047837 482 LEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRR 561 (882)
Q Consensus 482 ~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 561 (882)
.+++++.|.++++.-+.++ ++++.+.+|...|+...|++||..+++++.||+|++|+..+.+....+...
T Consensus 320 ---------qiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 320 ---------QILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred ---------hhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 8999999999999999988 889999999999999999999999999999999999999988766555332
Q ss_pred ceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEEEEEec-cCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 562 HQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIRSFKQA-KDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 562 ~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
+...+|..+-.-|.. ..+++|....+|.+-++. |+.++++... ...+...+++.||.|.++.+.++|+.++.|
T Consensus 390 ----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 390 ----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred ----CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 234578888887754 588888999999999987 8899988632 345667888999999999999999999999
Q ss_pred EccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 640 DFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 640 d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
.+.+|++-+.+.-|...|..++-+|..+.|++-+.||.+++|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999995
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.9e-29 Score=237.10 Aligned_cols=275 Identities=19% Similarity=0.265 Sum_probs=224.7
Q ss_pred CCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEec
Q 047837 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 321 ~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~ 400 (882)
.+.+++++.||.+++||.... ....+.||.++|.++.+... .+....|++++.|.++++|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~--------------n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIK--------------NSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred CceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEec--------------CCccceEEEecCCceEEEEEe
Confidence 456888999999999999763 33467788877776655311 123347999999999999998
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
+.+....+. .....+|...|.++...+++.
T Consensus 177 ~~~~~~~~~-----------------------------------------------~~~~~GHk~~V~sVsv~~sgt--- 206 (423)
T KOG0313|consen 177 NVGENKVKA-----------------------------------------------LKVCRGHKRSVDSVSVDSSGT--- 206 (423)
T ss_pred cCchhhhhH-----------------------------------------------HhHhcccccceeEEEecCCCC---
Confidence 876543221 111338999999999999988
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCC------------------------CceeEEEeecCCCCEEEEEEccCCCEEE
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKR------------------------NFDLIESIDDHSAAVTAVKFTCNGRKIL 536 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 536 (882)
.+++|+.|..+.||+..+ ...++..+.+|..+|.++.|++ ...++
T Consensus 207 ----------r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y 275 (423)
T KOG0313|consen 207 ----------RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY 275 (423)
T ss_pred ----------eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE
Confidence 899999999999999321 1134567889999999999997 67899
Q ss_pred EEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc---eEEEEEeccCCC
Q 047837 537 SCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK---LIRSFKQAKDFG 613 (882)
Q Consensus 537 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~~ 613 (882)
+++.|.+|+.||+.+++....+... ...++++.+|..++|++|+.|..+++||.+++. ..++|. +|.+
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~-------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~n 346 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTN-------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKN 346 (423)
T ss_pred eecccceEEEEEeecccceeeeecC-------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee--cchh
Confidence 9999999999999988877665443 378999999999999999999999999998763 334555 9999
Q ss_pred CcEEEEECCCCC-EEEEEeCCCcEEEEEccCCe-EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 614 DPMKVTVDPSGS-YLVCSYSNKSICLYDFISGE-MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 614 ~v~~~~~spdg~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.|.++.|+|... +|++++.|+++++||+++.+ ++..+.+|...|.++.|. ++.++++||.|.+|+|+.-.
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999654 57899999999999999887 999999999999999996 56799999999999998643
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=222.24 Aligned_cols=274 Identities=18% Similarity=0.240 Sum_probs=227.3
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|.++|.++.|+ -+|++.++++.|.+|++|+...+..+.
T Consensus 16 ~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~lik----------------------------------------- 53 (307)
T KOG0316|consen 16 AQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIK----------------------------------------- 53 (307)
T ss_pred cccceEEEEEc-cCCCEEEEcCCCceEEeecccccceee-----------------------------------------
Confidence 45666666676 899999999999999999998776654
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
.+.+|..+|..++.+.+.. .+++|+.|..+.+||+.++ +..+.+.+|...|+.++|
T Consensus 54 ----------tYsghG~EVlD~~~s~Dns-------------kf~s~GgDk~v~vwDV~TG-kv~Rr~rgH~aqVNtV~f 109 (307)
T KOG0316|consen 54 ----------TYSGHGHEVLDAALSSDNS-------------KFASCGGDKAVQVWDVNTG-KVDRRFRGHLAQVNTVRF 109 (307)
T ss_pred ----------eecCCCceeeecccccccc-------------ccccCCCCceEEEEEcccC-eeeeecccccceeeEEEe
Confidence 3668889999999888877 7999999999999999998 889999999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCcc-ceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNS-AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
+.+...+++++.|.++++||.++... +.++.... .+.|.++..+ +..+++|+.||++|.||++.|+....+.
T Consensus 110 NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-----~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~ 182 (307)
T KOG0316|consen 110 NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-----KDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF 182 (307)
T ss_pred cCcceEEEeccccceeEEEEcccCCCCccchhhhh-----cCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc
Confidence 99999999999999999999985432 22222222 2577777775 6789999999999999999998876654
Q ss_pred eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCe--EEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 608 QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVI--TGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 608 ~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
..+|+++.|++|++.+.+++-|+++++.|-.+|+++..++||...- ...+++.....++++++||.|.+||+.+
T Consensus 183 ----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 183 ----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 4589999999999999999999999999999999999999997644 3457778888999999999999999999
Q ss_pred CCCCcccCCCCCc--ccEEEecCCCeEEEecccccc
Q 047837 686 ILPPRNFAQPAAL--SPIIFCEEEDQKCRMDSVNMS 719 (882)
Q Consensus 686 ~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~ 719 (882)
......+.....+ ..+.+.|..+..+........
T Consensus 259 ~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 259 ETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred ceeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence 8887777665544 567777776655554444333
No 64
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.2e-29 Score=268.20 Aligned_cols=272 Identities=24% Similarity=0.377 Sum_probs=225.3
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.++.|+ ++|+.+++++.|+.+++|+....+. .
T Consensus 158 ~~~sv~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~-~----------------------------------------- 194 (456)
T KOG0266|consen 158 ECPSVTCVDFS-PDGRALAAASSDGLIRIWKLEGIKS-N----------------------------------------- 194 (456)
T ss_pred ccCceEEEEEc-CCCCeEEEccCCCcEEEeecccccc-h-----------------------------------------
Confidence 47888899999 8999999999999999999965441 0
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
....+.+|...|..++|+|+++ ++++++.|++|+|||+......++++.+|...|++++|
T Consensus 195 -------~~~~l~~h~~~v~~~~fs~d~~-------------~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f 254 (456)
T KOG0266|consen 195 -------LLRELSGHTRGVSDVAFSPDGS-------------YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAF 254 (456)
T ss_pred -------hhccccccccceeeeEECCCCc-------------EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEe
Confidence 0111358999999999999998 99999999999999996655889999999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc--eEEEE
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK--LIRSF 606 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~--~~~~~ 606 (882)
+|+++++++|+.|++|++||+++++....+ . .|.+.|.+++|++++.+|++++.|+.|++||+.++. ++..+
T Consensus 255 ~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~-----~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 328 (456)
T KOG0266|consen 255 SPDGNLLVSGSDDGTVRIWDVRTGECVRKL-K-----GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL 328 (456)
T ss_pred cCCCCEEEEecCCCcEEEEeccCCeEEEee-e-----ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence 999999999999999999999975444333 3 334799999999999999999999999999999999 55666
Q ss_pred EeccCCC--CcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCC---eEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 607 KQAKDFG--DPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEV---ITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 607 ~~~~~~~--~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
. .+.. .++.++|+|+++++++++.|+.+++||+..+..+..+.+|... +.+..+++.++++++++.|+.|++|
T Consensus 329 ~--~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 329 S--GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVW 406 (456)
T ss_pred c--CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEE
Confidence 6 4433 5899999999999999999999999999999999999998875 3444567899999999999999999
Q ss_pred eCCCCCCCcccC-C-CCCcccEEEecCCCeEE
Q 047837 682 EKYGILPPRNFA-Q-PAALSPIIFCEEEDQKC 711 (882)
Q Consensus 682 d~~~~~~~~~~~-~-~~~~~~~~~s~~~~~~~ 711 (882)
|+.+......+. + ...+..+.+.+....++
T Consensus 407 ~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 407 DSSSGGILQRLEGHSKAAVSDLSSHPTENLIA 438 (456)
T ss_pred eCCccchhhhhcCCCCCceeccccCCCcCeee
Confidence 999765554443 3 34444555555554333
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.7e-28 Score=281.39 Aligned_cols=207 Identities=19% Similarity=0.251 Sum_probs=160.2
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.+++|++.++.+|++|+.||+|++||+.++..+..
T Consensus 574 H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~---------------------------------------- 613 (793)
T PLN00181 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT---------------------------------------- 613 (793)
T ss_pred CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE----------------------------------------
Confidence 5566777777756889999999999999999987654321
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEec-CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSL-SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
+. +...|.++.|++ ++. ++++|+.|+.|++||+++.......+.+|...|.++.
T Consensus 614 -----------~~-~~~~v~~v~~~~~~g~-------------~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~ 668 (793)
T PLN00181 614 -----------IK-TKANICCVQFPSESGR-------------SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR 668 (793)
T ss_pred -----------Ee-cCCCeEEEEEeCCCCC-------------EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE
Confidence 11 224577788854 454 8999999999999999876445677889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
|. ++.+|++++.|++|++||+............+...+|...+..++|+|++.+|++|+.|+.|++|+......+..+.
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~ 747 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK 747 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe
Confidence 97 78899999999999999997532111111112233456788999999999999999999999999987665443332
Q ss_pred e-----------ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEc
Q 047837 608 Q-----------AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 608 ~-----------~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~ 641 (882)
. ..+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 748 ~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 748 FKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1 134456999999999999999999999999996
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-28 Score=219.84 Aligned_cols=282 Identities=21% Similarity=0.292 Sum_probs=226.0
Q ss_pred EEEeecCC--CeEEEE-------eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc
Q 047837 314 IACQFSTS--EKLVVV-------YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV 384 (882)
Q Consensus 314 ~~~~~s~~--~~ll~~-------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~ 384 (882)
.++.|+|- ++|+++ .+.|++.|.++...+....+..+. -...+..++|++...+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-----------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-----------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-----------------cccceeEeeecCCCcc
Confidence 46788885 555544 247899999997554443333222 2456777888877788
Q ss_pred EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc
Q 047837 385 SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD 464 (882)
Q Consensus 385 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 464 (882)
.+++++.||++++||+..... ....++.|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s~--------------------------------------------------Pi~~~kEH~ 104 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPSK--------------------------------------------------PIHKFKEHK 104 (311)
T ss_pred eEEEEecCceEEEeccCCCCc--------------------------------------------------chhHHHhhh
Confidence 999999999999999653221 123467899
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCe
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRS 543 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~ 543 (882)
.+|.++.|++..+ +.+++++.|++|++|+...+ ..+.++.+|..-|...+|+| ..+.+++++.|++
T Consensus 105 ~EV~Svdwn~~~r------------~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 105 REVYSVDWNTVRR------------RIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred hheEEeccccccc------------eeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 9999999998765 37888899999999999876 77889999999999999999 7889999999999
Q ss_pred EEEEeCccCccceeeeccceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEEC
Q 047837 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 544 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s 621 (882)
+++||++.......+ . .|...|.++.|+. +...|++|+.|+.|+.||++.- .++..+. +|.-.|..++||
T Consensus 172 l~lwdvr~~gk~~~i-~-----ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~--gh~~AVRkvk~S 243 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSI-E-----AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN--GHGLAVRKVKFS 243 (311)
T ss_pred EEEEEecCCCceeEE-E-----eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec--CCceEEEEEecC
Confidence 999999876544432 2 3346899999998 5568899999999999999874 4566665 899999999999
Q ss_pred CC-CCEEEEEeCCCcEEEEEccCC-eEEEEEccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeC
Q 047837 622 PS-GSYLVCSYSNKSICLYDFISG-EMVAKAMGHGEVITGVTFLP-DCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 622 pd-g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~i~vwd~ 683 (882)
|. ..+||+++.|=++||||...+ ..+.+...|+.-|..+.|++ ++.++|+++.|+.++||+.
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 95 568899999999999999854 44556677999999999987 6679999999999999984
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=8.4e-28 Score=217.22 Aligned_cols=284 Identities=17% Similarity=0.259 Sum_probs=223.4
Q ss_pred CCCCCcEEEeecCCCeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 308 PTIPNAIACQFSTSEKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
+|..++..+.|+.+|.||. ++.|.+..+|-..+++. +-.+.||++.||++.. . .+.+.+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---lGty~GHtGavW~~Di----------------d-~~s~~l 67 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---LGTYDGHTGAVWCCDI----------------D-WDSKHL 67 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCce---eeeecCCCceEEEEEe----------------c-CCccee
Confidence 3444555789999998654 56699999999877754 3468888888887764 2 578899
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
+||+.|.++++||+.+++.+.... -...
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~k----------------------------------------------------~~~~ 95 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATWK----------------------------------------------------TNSP 95 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEee----------------------------------------------------cCCe
Confidence 999999999999999998875432 2334
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEE-----cCCCcEEEEEcCC------CceeEEEeecCCCCEEEEEEccCCCEE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASG-----GRDRTIHLYDVKR------NFDLIESIDDHSAAVTAVKFTCNGRKI 535 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g-----~~dg~v~iwd~~~------~~~~~~~~~~h~~~v~~~~~s~~~~~l 535 (882)
|..+.|++.+. +++.. +..+.|.++|++. ...+...+..+...++.+.|.|-++.|
T Consensus 96 Vk~~~F~~~gn-------------~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 96 VKRVDFSFGGN-------------LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred eEEEeeccCCc-------------EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 45555555554 33333 2346799999883 225567777788999999999999999
Q ss_pred EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCc
Q 047837 536 LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDP 615 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v 615 (882)
++|..||.|..||++++.........|. ..|+.+.+++|..++++++.|.+-++||..+-++++++. ...++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~-----~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---te~Pv 234 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHS-----SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---TERPV 234 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhc-----cccccccccCCcceEEecccCccceeeeccceeeEEEee---ecccc
Confidence 9999999999999998766655544443 699999999999999999999999999999999999996 56899
Q ss_pred EEEEECCCCCEEEEEeCCCc--------------EEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 616 MKVTVDPSGSYLVCSYSNKS--------------ICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 616 ~~~~~spdg~~l~~~~~dg~--------------i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
++.+++|-..+++.|+.... -+.|++-..+.+..+++|-++|++++|+|||+..++|+.||.||+.
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999998777776653221 2233333335677889999999999999999999999999999997
Q ss_pred eCC
Q 047837 682 EKY 684 (882)
Q Consensus 682 d~~ 684 (882)
-..
T Consensus 315 ~Fd 317 (327)
T KOG0643|consen 315 HFD 317 (327)
T ss_pred Eec
Confidence 543
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=226.00 Aligned_cols=282 Identities=20% Similarity=0.291 Sum_probs=226.5
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEee--------ccccceeEEEECCCCCEEEEEc--CEEEEEE
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK--------GHLYGVECIAFSPDGEHLVTVG--GYIYLWN 114 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~--------~h~~~V~~lafspdg~~Las~~--~~i~iWd 114 (882)
.-+.|..|||||+||++|+. ||-|.|||..+|+..+.|+ -+..+|.|+.||.|...||+|+ |.|+||.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSv--DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSV--DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cchhheeeCCCCceEeeccc--cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 67899999999999999976 9999999999998876654 3678999999999999999999 9999999
Q ss_pred cCcceeeeeee-cCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceE
Q 047837 115 WRSAMLVMKLK-ANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYF 192 (882)
Q Consensus 115 ~~~g~~~~~~~-~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 192 (882)
+.+|.+++++. .|. ..|+++.|+.|+..+.+++- .++++--+.++++ .+.+.+|...+
T Consensus 292 i~tG~ClRrFdrAHt--kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~--------LKEfrGHsSyv---------- 351 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHT--KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC--------LKEFRGHSSYV---------- 351 (508)
T ss_pred EecchHHHHhhhhhc--cCeeEEEEccCcchhhcccccceEEEeccccchh--------HHHhcCccccc----------
Confidence 99999999997 555 89999999999999998885 6899999999887 44555666555
Q ss_pred EEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeeccc
Q 047837 193 VSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQS 272 (882)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 272 (882)
+...|++||..+++++.||+|++|+.++
T Consensus 352 ----------------------------------------------------n~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 352 ----------------------------------------------------NEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred ----------------------------------------------------cceEEcCCCCeEEEecCCccEEEecCcc
Confidence 6788999999999999999999999999
Q ss_pred ceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeec
Q 047837 273 LKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVS 352 (882)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~ 352 (882)
.+++.+++...
T Consensus 380 teC~~Tfk~~~--------------------------------------------------------------------- 390 (508)
T KOG0275|consen 380 TECLSTFKPLG--------------------------------------------------------------------- 390 (508)
T ss_pred hhhhhhccCCC---------------------------------------------------------------------
Confidence 99887764110
Q ss_pred CcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeee
Q 047837 353 HSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIF 432 (882)
Q Consensus 353 ~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (882)
.+.+|..+...|.+...+++|....++.+.++.. +.++.+..+
T Consensus 391 ----------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSG-------------------- 433 (508)
T KOG0275|consen 391 ----------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSG-------------------- 433 (508)
T ss_pred ----------------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccC--------------------
Confidence 0111222222235566777787778888887763 322221111
Q ss_pred eeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee
Q 047837 433 ERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL 512 (882)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~ 512 (882)
+ ...+...+.+.+|.|. ++.+.++|+.++.|...++ .+
T Consensus 434 -----------------------k-----REgGdFi~~~lSpkGe-------------wiYcigED~vlYCF~~~sG-~L 471 (508)
T KOG0275|consen 434 -----------------------K-----REGGDFINAILSPKGE-------------WIYCIGEDGVLYCFSVLSG-KL 471 (508)
T ss_pred -----------------------C-----ccCCceEEEEecCCCc-------------EEEEEccCcEEEEEEeecC-ce
Confidence 0 1233444556677776 8999999999999999987 78
Q ss_pred EEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 513 IESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 513 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
.+++.-|...|..++-+|..+.||+=+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 889999999999999999999999999999999995
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.7e-28 Score=253.01 Aligned_cols=296 Identities=18% Similarity=0.232 Sum_probs=210.9
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCC----cceEeeeeeeeeeeeeeccc
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMST----AHLVSAGIFERNTMETSVST 443 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 443 (882)
.|.+.|.++.|+ +||++||+||.|+.|+||.+..............++.+..... +....-..............
T Consensus 265 ah~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 577777777777 9999999999999999999876333111110000000000000 00000000000000000000
Q ss_pred ------cCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee
Q 047837 444 ------QGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID 517 (882)
Q Consensus 444 ------~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 517 (882)
-......|++ ...+.+.+|.+.|..+.|+.++ +|++++.|.+|++|++... .+++.|.
T Consensus 344 ~s~~~~~p~~~f~f~e-kP~~ef~GHt~DILDlSWSKn~--------------fLLSSSMDKTVRLWh~~~~-~CL~~F~ 407 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSE-KPFCEFKGHTADILDLSWSKNN--------------FLLSSSMDKTVRLWHPGRK-ECLKVFS 407 (712)
T ss_pred CCccccCCCccccccc-cchhhhhccchhheecccccCC--------------eeEeccccccEEeecCCCc-ceeeEEe
Confidence 0001111111 2234578999999999999987 7999999999999999876 7888877
Q ss_pred cCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 518 DHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 518 ~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
|.+-|+||+|+| |.+++++|+-|+.|+||++...+. ......+ .-|++++|.|||++.++|+.+|..++|+
T Consensus 408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-v~W~Dl~------~lITAvcy~PdGk~avIGt~~G~C~fY~ 479 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-VDWNDLR------DLITAVCYSPDGKGAVIGTFNGYCRFYD 479 (712)
T ss_pred -cCCeeEEEEecccCCCcEeecccccceEEeecCcCee-Eeehhhh------hhheeEEeccCCceEEEEEeccEEEEEE
Confidence 999999999999 899999999999999999984432 2222222 4899999999999999999999999999
Q ss_pred ccCCceEEEEEeccC------CCCcEEEEECCCC-CEEEEEeCCCcEEEEEccCCeEEEEEccCCC--CeEEEEECCCCC
Q 047837 597 IAAGKLIRSFKQAKD------FGDPMKVTVDPSG-SYLVCSYSNKSICLYDFISGEMVAKAMGHGE--VITGVTFLPDCK 667 (882)
Q Consensus 597 ~~~~~~~~~~~~~~~------~~~v~~~~~spdg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~d~~ 667 (882)
+...++...+....+ ...|+.+.|.|.. ..|++.+.|..|||||.++.+++..++|+.. .-....|+.||+
T Consensus 480 t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 480 TEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK 559 (712)
T ss_pred ccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCC
Confidence 998888777654332 2379999999843 3566667899999999999999999987532 335678999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCC
Q 047837 668 HIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 668 ~l~s~~~dg~i~vwd~~~~~~ 688 (882)
+|++++.|..|++|+......
T Consensus 560 ~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred EEEEeecCceEEEEeCCCCcc
Confidence 999999999999999865443
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=235.38 Aligned_cols=323 Identities=16% Similarity=0.250 Sum_probs=239.1
Q ss_pred EEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccc
Q 047837 226 LYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFK 305 (882)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (882)
+..+...-++.-..+.+.|.++++.|.|..|++|+.|-+|++||+........- +. .
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr----------------------~ 208 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FR----------------------Q 208 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hh----------------------c
Confidence 333333444445566788899999999999999999999999998754321110 11 1
Q ss_pred cCC-CCCCcEEEeecCCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 306 LTP-TIPNAIACQFSTSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 306 ~~~-~~~~~~~~~~s~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
+.| ....+..+.|++.| .+|+.++....+++|-+..+... +.....-|.++. ...+|...++|.+|+|...
T Consensus 209 l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e----~~KGDQYI~Dm~---nTKGHia~lt~g~whP~~k 281 (641)
T KOG0772|consen 209 LQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE----FSKGDQYIRDMY---NTKGHIAELTCGCWHPDNK 281 (641)
T ss_pred cCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeee----eeccchhhhhhh---ccCCceeeeeccccccCcc
Confidence 112 22345678999987 48888889999999987643321 111222233332 3578999999999998888
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
+.++|++.||++|+||+...+...+. +..- ...+.
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qV---------------------------------------ik~k------~~~g~ 316 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQV---------------------------------------IKTK------PAGGK 316 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeE---------------------------------------Eeec------cCCCc
Confidence 99999999999999999876532221 1100 11244
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--eeEEEeecCCC--CEEEEEEccCCCEEEEEe
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--DLIESIDDHSA--AVTAVKFTCNGRKILSCS 539 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~ 539 (882)
.-.++.++|+++++ +||+|..||.|.+|+..... .....-..|.. .|++|.||+||++|++-+
T Consensus 317 Rv~~tsC~~nrdg~-------------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGK-------------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred ccCceeeecCCCcc-------------hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 55678889999988 89999999999999976532 23445567877 899999999999999999
Q ss_pred CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC------CCcEEEEEccCCceEEEEEeccCCC
Q 047837 540 ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ------DKKINSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 540 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
.|+++++||++..+........ +...-.-+.++|||+.++|++|.. .+++.+||..+...+..+. -...
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tg---L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~--i~~a 458 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTG---LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID--ISTA 458 (641)
T ss_pred CCCceeeeeccccccchhhhcC---CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec--CCCc
Confidence 9999999999976554433221 122246678999999999999863 4689999999999999887 5578
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEEc
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd~ 641 (882)
.|..+.|+|.-+.|.+|+.||.+++|=-
T Consensus 459 Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 459 SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred eEEEEeecchhhheeeecCCCceEEEEC
Confidence 8999999999999999999999998743
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7e-26 Score=199.24 Aligned_cols=258 Identities=21% Similarity=0.295 Sum_probs=209.8
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
..|.+.|.|.+|+ ++|++|++|+.|.+|++..++......
T Consensus 86 khhkgsiyc~~ws-~~geliatgsndk~ik~l~fn~dt~~~--------------------------------------- 125 (350)
T KOG0641|consen 86 KHHKGSIYCTAWS-PCGELIATGSNDKTIKVLPFNADTCNA--------------------------------------- 125 (350)
T ss_pred cccCccEEEEEec-CccCeEEecCCCceEEEEecccccccc---------------------------------------
Confidence 3478999999999 899999999999999998776433211
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEc-CCCcEEEEEcCCCceeEEEeecCCCCEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG-RDRTIHLYDVKRNFDLIESIDDHSAAVTA 525 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~h~~~v~~ 525 (882)
.|.-+.+.-|++.|..++|-.+.. ..+.+|++++ .|-.|++-|..++ +..+.+.+|++.|.+
T Consensus 126 -------~g~dle~nmhdgtirdl~fld~~~---------s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghila 188 (350)
T KOG0641|consen 126 -------TGHDLEFNMHDGTIRDLAFLDDPE---------SGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILA 188 (350)
T ss_pred -------cCcceeeeecCCceeeeEEecCCC---------cCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEE
Confidence 233345778999999999976644 2344677765 4677888898887 778889999999987
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecc-cCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLA-SQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIR 604 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~ 604 (882)
+ ++-++-++++++.|.+|++||++-......+.......+ ....|.+++..|.|++|++|-.|....+||++.++.++
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 6 455889999999999999999986655554433322111 23579999999999999999999999999999999999
Q ss_pred EEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC---e-EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 047837 605 SFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG---E-MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680 (882)
Q Consensus 605 ~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~---~-~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~v 680 (882)
.+. .|...|.++.|||...||.+++.|..|++-|++.. + .+.....|...+..+.|+|..--+++.+.|.++.+
T Consensus 268 ~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 268 RFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeC--CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 997 89999999999999999999999999999998632 1 23334559999999999999988999999999999
Q ss_pred EeCC
Q 047837 681 KEKY 684 (882)
Q Consensus 681 wd~~ 684 (882)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-27 Score=241.22 Aligned_cols=275 Identities=22% Similarity=0.350 Sum_probs=228.9
Q ss_pred EeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcE
Q 047837 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTI 395 (882)
Q Consensus 316 ~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i 395 (882)
+.|+ ....++.+-...|++|+..++..... . ..+...|+++.|+ ++|.+|++|..+|.|
T Consensus 183 ldWs-s~n~laValg~~vylW~~~s~~v~~l--------------~-----~~~~~~vtSv~ws-~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQSVYLWSASSGSVTEL--------------C-----SFGEELVTSVKWS-PDGSHLAVGTSDGTV 241 (484)
T ss_pred hhcc-cCCeEEEEecceEEEEecCCCceEEe--------------E-----ecCCCceEEEEEC-CCCCEEEEeecCCeE
Confidence 4566 34466666777899999987653221 1 1125778888888 899999999999999
Q ss_pred EEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee-ccceEEEEEEec
Q 047837 396 RLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA-HDAEILSLSFSL 474 (882)
Q Consensus 396 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~v~~~~~~~ 474 (882)
.+||....+.+.. +.+ |...|.+++|..
T Consensus 242 ~iwD~~~~k~~~~---------------------------------------------------~~~~h~~rvg~laW~~ 270 (484)
T KOG0305|consen 242 QIWDVKEQKKTRT---------------------------------------------------LRGSHASRVGSLAWNS 270 (484)
T ss_pred EEEehhhcccccc---------------------------------------------------ccCCcCceeEEEeccC
Confidence 9999987765432 234 889999999994
Q ss_pred CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcc
Q 047837 475 SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNS 554 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 554 (882)
. .+.+|+.++.|..+|++.....+..+.+|...|..+.|++|++++|+|+.|+.+.|||....+.
T Consensus 271 ~---------------~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 271 S---------------VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred c---------------eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 3 7999999999999999987555556889999999999999999999999999999999964444
Q ss_pred ceeeeccceecccCCceEEEEEec-CCCEEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEE--
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDP-TMEVVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVC-- 629 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-- 629 (882)
...+ ..|.+.|.+++|+| ...+||+|+ .|+.|++||..+|+.+..+. ....|..+.|++..+-|++
T Consensus 336 ~~~~------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 336 KFTF------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred cEEE------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEec
Confidence 4333 34558999999999 456888876 68999999999999999884 6789999999998876665
Q ss_pred EeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 630 SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
|..++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 456779999999999999999999999999999999999999999999999999775
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=211.94 Aligned_cols=274 Identities=14% Similarity=0.181 Sum_probs=232.6
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|.+++|+ .+|..|++++.|+++.+|+++..+....
T Consensus 17 ~~~~~~v~Sv~wn-~~g~~lasgs~dktv~v~n~e~~r~~~~-------------------------------------- 57 (313)
T KOG1407|consen 17 QGHVQKVHSVAWN-CDGTKLASGSFDKTVSVWNLERDRFRKE-------------------------------------- 57 (313)
T ss_pred hhhhhcceEEEEc-ccCceeeecccCCceEEEEecchhhhhh--------------------------------------
Confidence 4577888889998 7999999999999999999986633221
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
....+|.+.|-.++|+|..+ .++++++.|.+|++||++++ ++........+.| -+
T Consensus 58 -----------~~~~gh~~svdql~w~~~~~------------d~~atas~dk~ir~wd~r~~-k~~~~i~~~~eni-~i 112 (313)
T KOG1407|consen 58 -----------LVYRGHTDSVDQLCWDPKHP------------DLFATASGDKTIRIWDIRSG-KCTARIETKGENI-NI 112 (313)
T ss_pred -----------hcccCCCcchhhheeCCCCC------------cceEEecCCceEEEEEeccC-cEEEEeeccCcce-EE
Confidence 12458999999999999876 38999999999999999987 5655555444444 57
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
.|+|+|.+++.+..|..|.+.|.++.+....... ...+..++|+.++.+++.....|+|.|.....-+.+..+
T Consensus 113 ~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 113 TWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred EEcCCCCEEEEecCcccEEEEEecccceeehhcc-------cceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 8999999999999999999999986543322211 236788899988888888888899999999999999999
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
+ .|.....+|.|+|+|+|+|+|+.|..+-+||++.--+++.+.-+.-+|+.|.||.||++||++++|..|-|=+++++
T Consensus 186 ~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 186 K--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred c--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 8 89999999999999999999999999999999998888999889999999999999999999999999999999999
Q ss_pred CCCcccCCCCCcccEEEecCCCeEEEe
Q 047837 687 LPPRNFAQPAALSPIIFCEEEDQKCRM 713 (882)
Q Consensus 687 ~~~~~~~~~~~~~~~~~s~~~~~~~~~ 713 (882)
.....+....+...+++.|...-+.-.
T Consensus 264 d~~~eI~~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 264 DRVWEIPCEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred CeEEEeeccCCceeEEecCCCceeeEE
Confidence 999999888888888888877654443
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.9e-26 Score=207.87 Aligned_cols=275 Identities=14% Similarity=0.181 Sum_probs=222.9
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
+...+.+++|+.+|..|++|+.|+++++|+++..+.....
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~---------------------------------------- 58 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL---------------------------------------- 58 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh----------------------------------------
Confidence 4455688999999999999999999999988754221110
Q ss_pred CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEe
Q 047837 320 TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWD 399 (882)
Q Consensus 320 ~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd 399 (882)
.. .+|...|..++|.++...+|++++.|.+|++||
T Consensus 59 -----------------------------~~----------------~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 59 -----------------------------VY----------------RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred -----------------------------cc----------------cCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 11 346667777888888899999999999999999
Q ss_pred cCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCC
Q 047837 400 LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKD 479 (882)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (882)
.+.+++..+.. ..+.=.-+.|+|++.
T Consensus 94 ~r~~k~~~~i~----------------------------------------------------~~~eni~i~wsp~g~-- 119 (313)
T KOG1407|consen 94 IRSGKCTARIE----------------------------------------------------TKGENINITWSPDGE-- 119 (313)
T ss_pred eccCcEEEEee----------------------------------------------------ccCcceEEEEcCCCC--
Confidence 99888764421 111223456777777
Q ss_pred ccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeee
Q 047837 480 DVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKIS 559 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 559 (882)
+++.++.|..|.+.|.++. +.+...+ ....+..+.|+.++.+++.....|+|.|......+....
T Consensus 120 -----------~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~s-- 184 (313)
T KOG1407|consen 120 -----------YIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQS-- 184 (313)
T ss_pred -----------EEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccc--
Confidence 8999999999999999875 4443333 456678899998888888888889999988774443333
Q ss_pred ccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
..+|.....|+.|+|+|+++|+|+.|..+.+||+..--+++.+. .+.-+|..+.||.||++||+|++|..|-|=
T Consensus 185 ----i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 185 ----IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIA 258 (313)
T ss_pred ----cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec--cccCceEEEEeccCcceeeccCccceEEeE
Confidence 34556789999999999999999999999999999999999998 888999999999999999999999999999
Q ss_pred EccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC
Q 047837 640 DFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 640 d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d 675 (882)
++++|..+..++ +.++-..++|+|...+||-++.|
T Consensus 259 ~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 259 EVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999997 78999999999999999988754
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.3e-28 Score=216.69 Aligned_cols=203 Identities=20% Similarity=0.309 Sum_probs=169.6
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|..-|.+++|+ .|.++|+||+.+..+|++|++..+..
T Consensus 99 hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~Ap------------------------------------------ 135 (334)
T KOG0278|consen 99 HKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAP------------------------------------------ 135 (334)
T ss_pred hhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCC------------------------------------------
Confidence 56667778887 88899999999999999998764322
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
...+.+|.+.|..+-|....+ .+++...|++|++||.+++ ..++.+. ....|+++.+
T Consensus 136 --------p~E~~ghtg~Ir~v~wc~eD~-------------~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEv 192 (334)
T KOG0278|consen 136 --------PKEISGHTGGIRTVLWCHEDK-------------CILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEV 192 (334)
T ss_pred --------chhhcCCCCcceeEEEeccCc-------------eEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceee
Confidence 223668999999999998877 7888899999999999998 5666665 4678999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ 608 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 608 (882)
+++|++|.++.. +.|.+||..+-+....... ...|.+..++|+...+++|++|..++.||..+|..+..+.
T Consensus 193 s~dG~ilTia~g-ssV~Fwdaksf~~lKs~k~-------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n- 263 (334)
T KOG0278|consen 193 SQDGRILTIAYG-SSVKFWDAKSFGLLKSYKM-------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN- 263 (334)
T ss_pred ccCCCEEEEecC-ceeEEeccccccceeeccC-------ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc-
Confidence 999988877665 5699999986655443322 2478999999999999999999999999999999998862
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 609 AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 609 ~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
.+|.++|.++.|+|||...|+|+.||+|+||.+..++.
T Consensus 264 kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 264 KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 38999999999999999999999999999999876653
No 76
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=5.9e-26 Score=228.54 Aligned_cols=189 Identities=13% Similarity=0.193 Sum_probs=147.5
Q ss_pred EcCCCcEEEEEcCCCceeEEE-ee--cCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceee-eccceecccCC
Q 047837 495 GGRDRTIHLYDVKRNFDLIES-ID--DHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKI-SRRHQQLASQG 569 (882)
Q Consensus 495 g~~dg~v~iwd~~~~~~~~~~-~~--~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~ 569 (882)
.+..|.|.||+++...++... +. -....|+++.|.| |...||+++.||.|++|.+..+...... ........|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 466789999999875443221 11 1456799999999 8899999999999999999876544322 22333446678
Q ss_pred ceEEEEEecC-CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-EE
Q 047837 570 TVYDMDIDPT-MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE-MV 647 (882)
Q Consensus 570 ~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~-~~ 647 (882)
.|+.+.|+|- ...|++++.|.+|++||+.+++....+. +|.+.|..++|||||+.+|+.+.||+|++|+.++++ .+
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~--gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV--GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec--cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 9999999994 4689999999999999999999998998 999999999999999999999999999999998764 44
Q ss_pred EEEccCC-CCeEEEEECCCCCEEEEEeCCC----eEEEEeCCC
Q 047837 648 AKAMGHG-EVITGVTFLPDCKHIVSVGGDG----LQRVKEKYG 685 (882)
Q Consensus 648 ~~~~~h~-~~v~~l~~s~d~~~l~s~~~dg----~i~vwd~~~ 685 (882)
++-++.. ..--.+.|.-||++++..+.|. .|.+||...
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 4443321 2334677888899888887665 577777654
No 77
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.4e-25 Score=241.06 Aligned_cols=292 Identities=15% Similarity=0.137 Sum_probs=218.6
Q ss_pred EeeeccceEEEEEEec-CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc------eeEEEeecCCCCEEEEEEccC
Q 047837 459 LLDAHDAEILSLSFSL-SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF------DLIESIDDHSAAVTAVKFTCN 531 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~------~~~~~~~~h~~~v~~~~~s~~ 531 (882)
.+.+|.+.|.+++|+| ++. +|++|+.|++|++||+.++. ..+..+.+|...|.+++|+|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~-------------~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQ-------------KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCC-------------EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC
Confidence 4678999999999999 666 89999999999999997642 346778899999999999997
Q ss_pred C-CEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc
Q 047837 532 G-RKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610 (882)
Q Consensus 532 ~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 610 (882)
+ .+|++++.|++|++||+.++.....+ ..|...|.+++|+|++.+|++++.|++|++||+++++.+..+. +
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~tg~~~~~l------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~--~ 208 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVERGKAVEVI------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE--A 208 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCCCeEEEEE------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--c
Confidence 5 69999999999999999876543322 2345789999999999999999999999999999999988887 6
Q ss_pred CCCC-cEEEEECCCCCEEEEEe----CCCcEEEEEccCCe-EEEEEccC-CCCeEEEEECCCCCEEEEEe-CCCeEEEEe
Q 047837 611 DFGD-PMKVTVDPSGSYLVCSY----SNKSICLYDFISGE-MVAKAMGH-GEVITGVTFLPDCKHIVSVG-GDGLQRVKE 682 (882)
Q Consensus 611 ~~~~-v~~~~~spdg~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd 682 (882)
|.+. ...+.|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++|+++|++++ .|+.|++||
T Consensus 209 H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 209 HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 6554 45788999888777654 47899999998754 44444333 34566678999999999988 599999999
Q ss_pred CCCCCCCccc--CCCCCcccEEEecCCCeEEEecccccccccCcCcCCCccccceecCCceeeEEEecCCch--hhhhcc
Q 047837 683 KYGILPPRNF--AQPAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQIGPHLHYHGVKPHLTSAFKFSISRLP--KWAQKK 758 (882)
Q Consensus 683 ~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~ 758 (882)
+.++...... ....+...++|.|... +.+..- +..+ .|+. ....+.-++|.++|.. ..|+.+
T Consensus 289 l~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~---------Ei~r--~~~l-~~~~i~pis~~vpRk~~~~~fq~D 354 (493)
T PTZ00421 289 LMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKC---------EIAR--FYAL-TYHSLYTIQMLLPRKQADSELQVD 354 (493)
T ss_pred eeCCceEEEeeccCCCCCcceEeccccc--ccccce---------eeeE--EEEe-cCCeEEEEEEEeccCCCccccccc
Confidence 9987655432 3344556677766432 111111 1111 1222 2233556899999984 478888
Q ss_pred ccccccccCCcccccccccccccCCCcc
Q 047837 759 VTDSEIVPGNLDFSLSQEVEKKSLSPFV 786 (882)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 786 (882)
....+.. ..|.+++.+.-..+...|.-
T Consensus 355 lyP~t~~-~~p~~ta~ew~~G~~~~p~~ 381 (493)
T PTZ00421 355 VYPPTFA-DHPAITADEYFSGGNAEPLV 381 (493)
T ss_pred cCCCCCC-CCCccCHHHHhCCCCCCCeE
Confidence 8876655 46788888877777776654
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.5e-27 Score=211.71 Aligned_cols=282 Identities=21% Similarity=0.340 Sum_probs=207.9
Q ss_pred eEEEECC--CCCEEEEEc--------CEEEEEEcCcceeeeeeecCCcccceeEEEEccC--CCEEEEECCCcEEEEEcc
Q 047837 92 ECIAFSP--DGEHLVTVG--------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSD--AKFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 92 ~~lafsp--dg~~Las~~--------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d--~~~l~~~~~~~i~iwd~~ 159 (882)
.++.||| ++++.++.. |++.|-++..++-+.......-.+.+..++|+++ ...++..|||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788999 555444332 8999999976655544433323378999999994 456666788999999964
Q ss_pred cCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
.... ....++.|...|
T Consensus 92 ~~s~-------Pi~~~kEH~~EV--------------------------------------------------------- 107 (311)
T KOG0277|consen 92 MPSK-------PIHKFKEHKREV--------------------------------------------------------- 107 (311)
T ss_pred CCCc-------chhHHHhhhhhe---------------------------------------------------------
Confidence 3222 223333343333
Q ss_pred eceeeeeEEEecC-CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 240 DLKVKNGFALSAS-SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 240 ~~~~~~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.++-+++- ++.+++++.|++|++|+....+.
T Consensus 108 -----~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S------------------------------------------- 139 (311)
T KOG0277|consen 108 -----YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS------------------------------------------- 139 (311)
T ss_pred -----EEeccccccceeEEeeccCCceEeecCCCCcc-------------------------------------------
Confidence 44555543 44566667777777777653221
Q ss_pred cCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 319 s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
+.++.||...| ...+|+|..++++++++.|+++++|
T Consensus 140 ----------------------------v~Tf~gh~~~I----------------y~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 140 ----------------------------VQTFNGHNSCI----------------YQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred ----------------------------eEeecCCccEE----------------EEEecCCCCCCeEEEccCCceEEEE
Confidence 12344555444 4455566789999999999999999
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCC
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKK 478 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (882)
|++.. |+.+.+..|..+|.++.|+.-.+
T Consensus 176 dvr~~---------------------------------------------------gk~~~i~ah~~Eil~cdw~ky~~- 203 (311)
T KOG0277|consen 176 DVRSP---------------------------------------------------GKFMSIEAHNSEILCCDWSKYNH- 203 (311)
T ss_pred EecCC---------------------------------------------------CceeEEEeccceeEeecccccCC-
Confidence 98742 34455778999999999998765
Q ss_pred CccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCcccee
Q 047837 479 DDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
++++||+.|+.|++||++.-..++..+.+|.-.|+.++||| ....|++++.|=+++|||........+
T Consensus 204 -----------~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 204 -----------NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred -----------cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence 48999999999999999987788899999999999999999 456889999999999999987766655
Q ss_pred eeccceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEc
Q 047837 558 ISRRHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSI 597 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~ 597 (882)
....|. .-+..+.|++ +..++|+++-|..++||+.
T Consensus 273 ~~~~Ht-----EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHT-----EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccc-----eEEeccccccccCceeeecccccceeeecc
Confidence 555444 5788899988 5569999999999999984
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.4e-27 Score=217.47 Aligned_cols=308 Identities=19% Similarity=0.277 Sum_probs=236.8
Q ss_pred cCCCCCCcEEEeecCCCeEEEEeC-CceEEEEEcccccccc-eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 306 LTPTIPNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEAT-RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
+..|...+.+.+|++||.|++.++ |..|+|+|++..-... ......+.+.. .-.....+..|...|+++.|+ |..
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa--~hPvIRTlYDH~devn~l~FH-Pre 184 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQA--RHPVIRTLYDHVDEVNDLDFH-PRE 184 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCccc--CCceEeehhhccCcccceeec-chh
Confidence 445777888999999999887655 9999999997321100 00011111110 011123345689999999999 788
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
.+|++++.|++|+++|+......+.+. .-..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K-------------------------------------------------~~qd 215 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFK-------------------------------------------------VFQD 215 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHH-------------------------------------------------Hhhc
Confidence 999999999999999997543211100 1123
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEE---EeecCCCCEEEEEEccCCCEEEEEeC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIE---SIDDHSAAVTAVKFTCNGRKILSCSA 540 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~ 540 (882)
..+|.++.|+|.|. +|+.|....++++||+.+- ++.. .-..|++.|+++.+++.+++.++++.
T Consensus 216 ~~~vrsiSfHPsGe-------------fllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 216 TEPVRSISFHPSGE-------------FLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred cceeeeEeecCCCc-------------eEEEecCCCceeEEeccce-eEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 45788899999988 9999999999999999885 3332 22469999999999999999999999
Q ss_pred CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCC---CCcEE
Q 047837 541 DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDF---GDPMK 617 (882)
Q Consensus 541 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~v~~ 617 (882)
||.|++||--+++....+...|. ...|.+..|..+++++++.+.|..+++|.+.+++.+..+...+.. ..-+.
T Consensus 282 DG~IklwDGVS~rCv~t~~~AH~----gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIGNAHG----GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred CCcEEeeccccHHHHHHHHhhcC----CceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 99999999887777766655554 358999999999999999999999999999999999999854322 23456
Q ss_pred EEECCCCCEEEEEeC-CCcEEEEEccCCeEEEEE-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 618 VTVDPSGSYLVCSYS-NKSICLYDFISGEMVAKA-MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 618 ~~~spdg~~l~~~~~-dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
..|+....|++.-.+ .+.++-||.+++..+..+ .+|.+.++.+.-||.+.-++|++.|-.+|+|--
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 778888888776543 568999999998765544 469999999999999999999999999999964
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=6e-27 Score=230.57 Aligned_cols=302 Identities=14% Similarity=0.137 Sum_probs=227.3
Q ss_pred CCCCCcEEEeecCCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 308 PTIPNAIACQFSTSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
.+...|.++++.|.| ++++|+-|..|++||++......+. |......-...|..+.|+ +.+..|
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~--------------fr~l~P~E~h~i~sl~ys-~Tg~~i 229 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS--------------FRQLQPCETHQINSLQYS-VTGDQI 229 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchh--------------hhccCcccccccceeeec-CCCCeE
Confidence 344556689999998 5777888999999999765432211 011112235678888998 677777
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCE----EEeee
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGST----LLLDA 462 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~ 462 (882)
++.+.....+++|-..... .+ +.....+ ....+
T Consensus 230 Lvvsg~aqakl~DRdG~~~-~e------------------------------------------~~KGDQYI~Dm~nTKG 266 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEI-VE------------------------------------------FSKGDQYIRDMYNTKG 266 (641)
T ss_pred EEEecCcceeEEccCCcee-ee------------------------------------------eeccchhhhhhhccCC
Confidence 7777777899999664322 22 2222222 12468
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-----cCCCCEEEEEEccCCCEEEE
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-----DHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s 537 (882)
|...+++.+|+|..+ ..+++++.||+++|||+.........+. +..-.++.++|++||++||+
T Consensus 267 Hia~lt~g~whP~~k------------~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNK------------EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred ceeeeeccccccCcc------------cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh
Confidence 999999999999876 3799999999999999987544444443 23456899999999999999
Q ss_pred EeCCCeEEEEeCccCccceeeeccceecccCC--ceEEEEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCC
Q 047837 538 CSADRSLVVRDVVETNSAYKISRRHQQLASQG--TVYDMDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGD 614 (882)
Q Consensus 538 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~ 614 (882)
|+.||.|.+|+......... .+...+|.. .|++++||+||++|++-+.|+++++||++.. +++.....-.....
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~---~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPV---MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred cccCCceeeeecCCcccccc---eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 99999999999753221111 111223334 8999999999999999999999999999864 45555543344556
Q ss_pred cEEEEECCCCCEEEEEeC------CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 615 PMKVTVDPSGSYLVCSYS------NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 615 v~~~~~spdg~~l~~~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
-+.++|||+.++|++|.. .|.+++||..+.+.++.+.-....|..+.|+|.-+.|+.++.||++++|=
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 788999999999999863 57899999999999999887888999999999999999999999999753
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-25 Score=208.58 Aligned_cols=206 Identities=16% Similarity=0.234 Sum_probs=167.4
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 538 (882)
.+.+|...|..++.+|.+. .+++++.|++|++||++.. ++...+.. ..-..++|+|.|-++|++
T Consensus 95 YF~GH~~~V~sL~~sP~~d-------------~FlS~S~D~tvrLWDlR~~-~cqg~l~~--~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDD-------------TFLSSSLDKTVRLWDLRVK-KCQGLLNL--SGRPIAAFDPEGLIFALA 158 (311)
T ss_pred EcCCCCceEEEEEecCCCC-------------eEEecccCCeEEeeEecCC-CCceEEec--CCCcceeECCCCcEEEEe
Confidence 4779999999999999988 8999999999999999965 44444432 233457899999999999
Q ss_pred eCCCeEEEEeCccCccc-eeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCC-CcE
Q 047837 539 SADRSLVVRDVVETNSA-YKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFG-DPM 616 (882)
Q Consensus 539 ~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~v~ 616 (882)
...+.|++||++.-... ....... .....+.+.+.|||||++++.+...+.+++.|.-+|..+.++....... -..
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~--~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSIT--DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccC--CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 98889999999865322 2222111 1334688999999999999999999999999999999999988443333 235
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 617 KVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG-HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 617 ~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
..+|+||++++++|+.||+|.+|++++|+.+..+.+ +.+++.++.|+|.-.+++|++ ..+-+|=..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 788999999999999999999999999999999998 799999999999866666555 677888654
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=247.85 Aligned_cols=280 Identities=21% Similarity=0.320 Sum_probs=235.5
Q ss_pred CCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee
Q 047837 311 PNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS 390 (882)
Q Consensus 311 ~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~ 390 (882)
..+++..|. ++.++++..+++|++||...+.... ..+.||.+.||.+++ . ..+.++++|+
T Consensus 209 ~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~--~~l~GH~g~V~~l~~----------------~-~~~~~lvsgS 268 (537)
T KOG0274|consen 209 HVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLIL--TRLVGHFGGVWGLAF----------------P-SGGDKLVSGS 268 (537)
T ss_pred chhhhheee-cCeEEecCCCceeEEeecccceEEE--eeccCCCCCceeEEE----------------e-cCCCEEEEEe
Confidence 344555666 8889999999999999998764322 237777777777776 2 4688999999
Q ss_pred CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEE
Q 047837 391 ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSL 470 (882)
Q Consensus 391 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~ 470 (882)
.|.++++||..++++.. .+.+|...|.++
T Consensus 269 ~D~t~rvWd~~sg~C~~---------------------------------------------------~l~gh~stv~~~ 297 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTH---------------------------------------------------SLQGHTSSVRCL 297 (537)
T ss_pred cCCcEEeEecCCCcEEE---------------------------------------------------EecCCCceEEEE
Confidence 99999999999887643 466899999988
Q ss_pred EEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 471 SFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
...+. .+++|+.|.+|++|++.++ ..+..+.+|..+|.++..+ +.++++|+.|++|++||+.
T Consensus 298 ~~~~~---------------~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 298 TIDPF---------------LLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EccCc---------------eEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 87765 6888999999999999987 8888899999999999996 8899999999999999999
Q ss_pred cCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECCCCCEEEE
Q 047837 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
+.+....+. +|...|+++.+.+. ..+++|+.|++|++||+.+. +++.++. +|..-+..+.+ .+++|++
T Consensus 360 ~~~cl~sl~------gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~--~h~~~v~~l~~--~~~~Lvs 428 (537)
T KOG0274|consen 360 TGKCLKSLS------GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ--GHTSLVSSLLL--RDNFLVS 428 (537)
T ss_pred hceeeeeec------CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc--CCccccccccc--ccceeEe
Confidence 665444432 34589999988766 89999999999999999999 9999998 78777766555 4789999
Q ss_pred EeCCCcEEEEEccCCeEEEEEcc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 630 SYSNKSICLYDFISGEMVAKAMG-HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
++.|++|++||..+++++..+.+ |.+.|..+++. ...+++++.||.+++||++.+...+.+
T Consensus 429 ~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999999999999998 77899999886 467888999999999999988877654
No 83
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=241.34 Aligned_cols=291 Identities=15% Similarity=0.171 Sum_probs=213.3
Q ss_pred EeeeccceEEEEEEecC-CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-------eeEEEeecCCCCEEEEEEcc
Q 047837 459 LLDAHDAEILSLSFSLS-SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-------DLIESIDDHSAAVTAVKFTC 530 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-------~~~~~~~~h~~~v~~~~~s~ 530 (882)
.+.+|.+.|.+++|+|. +. +|++|+.|++|+|||+.++. ..+..+.+|...|.+++|+|
T Consensus 69 ~L~gH~~~V~~lafsP~~~~-------------lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSE-------------ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCC-------------EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 46689999999999997 45 89999999999999997632 23456788999999999999
Q ss_pred CCCE-EEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec
Q 047837 531 NGRK-ILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA 609 (882)
Q Consensus 531 ~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 609 (882)
++.. |++++.|++|++||+.++.....+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+.++.
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-- 206 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-- 206 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe--
Confidence 8876 4689999999999998765443331 23579999999999999999999999999999999998887
Q ss_pred cCCCCcEE-----EEECCCCCEEEEEeCCC----cEEEEEccC-CeEEEEEcc--CCCCeEEEEECCCCCEEEEEeCCCe
Q 047837 610 KDFGDPMK-----VTVDPSGSYLVCSYSNK----SICLYDFIS-GEMVAKAMG--HGEVITGVTFLPDCKHIVSVGGDGL 677 (882)
Q Consensus 610 ~~~~~v~~-----~~~spdg~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--h~~~v~~l~~s~d~~~l~s~~~dg~ 677 (882)
+|.+.+.. ..|++++.+|++++.|+ +|+|||+++ ++++..+.. +.+.+......++|.++++|+.|++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 77765543 23568999999887764 799999985 566665432 3344444555667999999999999
Q ss_pred EEEEeCCCCC--CCcccCCCCCcccEEEecCCCeEEEecccccccccCcCcCCCccccceecCCceeeEEEecCCc-hhh
Q 047837 678 QRVKEKYGIL--PPRNFAQPAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQIGPHLHYHGVKPHLTSAFKFSISRL-PKW 754 (882)
Q Consensus 678 i~vwd~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~ 754 (882)
|++|++..+. .+..+....++..+.|.|... |.+..- +..+ .|..+....+.-++|.++|. ...
T Consensus 287 Ir~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~--~dv~~c---------Ei~R--~~kl~~~~~i~pisf~vPRk~~~~ 353 (568)
T PTZ00420 287 CRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI--CDVYKC---------EIGR--VYKNENNSSIRPISFYVPRKNPTK 353 (568)
T ss_pred EEEEEccCCcEEeecccccCCCccceEEccccc--cCchhh---------hHhH--HhhhcCCCeEEEEEEEeccCCchh
Confidence 9999997653 233445556667788877552 111111 1111 22233334466689999998 478
Q ss_pred hhccccccccccCCcccccccccccccCCCc
Q 047837 755 AQKKVTDSEIVPGNLDFSLSQEVEKKSLSPF 785 (882)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 785 (882)
|+.+....+.. ..|.+++.+.-..+...|.
T Consensus 354 Fq~DlyP~t~~-~~pa~ta~eW~~G~~~~p~ 383 (568)
T PTZ00420 354 FQEDLYPPILM-HDPERSSRNWIDGKDNKMK 383 (568)
T ss_pred cccccCCCCCC-CCcccCHHHHhCCCCCCCc
Confidence 88888776643 3567777665555555553
No 84
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-26 Score=207.13 Aligned_cols=282 Identities=13% Similarity=0.160 Sum_probs=236.7
Q ss_pred EEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEE
Q 047837 458 LLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 458 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 537 (882)
+.+.+|..+++.+.|+.++. +|.+++.|.+..+|-..++ +.+.++.+|++.|.+++.+.+.+.+++
T Consensus 4 i~l~GHERplTqiKyN~eGD-------------LlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liT 69 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-------------LLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLIT 69 (327)
T ss_pred cccccCccccceEEecCCCc-------------EEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeee
Confidence 45779999999999999998 9999999999999998776 889999999999999999999999999
Q ss_pred EeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcc-------CCceEEE
Q 047837 538 CSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD-----KKINSFSIA-------AGKLIRS 605 (882)
Q Consensus 538 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~-------~~~~~~~ 605 (882)
|+.|.++++||+++++........ .+|..+.|+++|.+++....+ +.|.++|++ ..++...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~-------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTN-------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecC-------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 999999999999998877766443 489999999999988877654 479999998 3445666
Q ss_pred EEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 606 FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE-MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 606 ~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+. .+...++.+.|+|-+++|++|.+||.|.+||+++|+ .+..-+.|...|+.|.|++|..+++|++.|.+-++||..
T Consensus 143 I~--t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 143 IP--TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred ec--CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 65 677999999999999999999999999999999985 455567799999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcccEEEecCCCeEEEecccccc-cccCcCcCC-------------CccccceecCCceeeEEEecCC
Q 047837 685 GILPPRNFAQPAALSPIIFCEEEDQKCRMDSVNMS-FKKDLDQIG-------------PHLHYHGVKPHLTSAFKFSISR 750 (882)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~f~~~~ 750 (882)
+...++++....+++..+++|-.++++-....+.. ........| +.-++.||-+ .+-++.+.+
T Consensus 221 tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG---PINsvAfhP 297 (327)
T KOG0643|consen 221 TLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG---PINSVAFHP 297 (327)
T ss_pred ceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc---CcceeEECC
Confidence 99999999999999999999998888776555443 221222222 1122336666 444566788
Q ss_pred chhhhhccccccccc
Q 047837 751 LPKWAQKKVTDSEIV 765 (882)
Q Consensus 751 ~~~~~~~~~~~~~~~ 765 (882)
+++.+.++.+|...+
T Consensus 298 dGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVR 312 (327)
T ss_pred CCcccccCCCCceEE
Confidence 888888888887765
No 85
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=4.3e-26 Score=216.54 Aligned_cols=309 Identities=18% Similarity=0.273 Sum_probs=230.4
Q ss_pred cccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccC---CCEEEEECC-CcEEEEEccc
Q 047837 87 HLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSD---AKFIVTAGK-KHLKFWTIGS 160 (882)
Q Consensus 87 h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d---~~~l~~~~~-~~i~iwd~~~ 160 (882)
|.+.|.++... ++++++++ |.++||| ..|+.+..+.+|. ++|.+++|--. ...|++++. .++++|.++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght--~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHT--GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCC--cceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 88889988888 88999999 9999999 5788899999988 89998887542 235777775 6899999987
Q ss_pred CccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEee
Q 047837 161 SATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVD 240 (882)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~ 240 (882)
+...... .....+|..+|
T Consensus 179 ~~~~~~~----~~~~~GHk~~V---------------------------------------------------------- 196 (423)
T KOG0313|consen 179 GENKVKA----LKVCRGHKRSV---------------------------------------------------------- 196 (423)
T ss_pred chhhhhH----HhHhcccccce----------------------------------------------------------
Confidence 7652211 11222455544
Q ss_pred ceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC
Q 047837 241 LKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST 320 (882)
Q Consensus 241 ~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 320 (882)
.+++..++|..+++|+.|.+|.+|+.++- ....+..... .-.+....-.......+..-+.+|...+.++.|++
T Consensus 197 ----~sVsv~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~-~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 197 ----DSVSVDSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSN-RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ----eEEEecCCCCeEEeecccceeeecccCCC-ccccccccch-hhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 88999999999999999999999993321 1111110000 00000000001111112234567788888999999
Q ss_pred CCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEec
Q 047837 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 321 ~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~ 400 (882)
.+.+++++.|++|+.||+.++...... . -...+.|+..+ +..++|++|+.|..|++||.
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~---~-----------------~~ksl~~i~~~-~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTL---T-----------------TNKSLNCISYS-PLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred CCceEeecccceEEEEEeecccceeee---e-----------------cCcceeEeecc-cccceeeecCCCCceeecCC
Confidence 888999999999999999887544321 1 24567788887 68899999999999999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
+++.... . ...+.+|.+.|.++.|+|...
T Consensus 330 R~~~gs~---------------------------------------v---------~~s~~gH~nwVssvkwsp~~~--- 358 (423)
T KOG0313|consen 330 RTGDGSV---------------------------------------V---------SQSLIGHKNWVSSVKWSPTNE--- 358 (423)
T ss_pred CCCCCce---------------------------------------e---------EEeeecchhhhhheecCCCCc---
Confidence 8763210 0 123568999999999999887
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
+.|++|+.|+++++||+++...++..+.+|.+.|.++.|+ ++..+++|+.|.+|+++.-.
T Consensus 359 ---------~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 359 ---------FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ---------eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 4899999999999999999866899999999999999998 67799999999999998644
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=227.39 Aligned_cols=285 Identities=16% Similarity=0.272 Sum_probs=229.9
Q ss_pred cccCCCCCCcEEEeecCC-CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 304 FKLTPTIPNAIACQFSTS-EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 304 ~~~~~~~~~~~~~~~s~~-~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
+.+..+...+..+.|-++ +.|.+++.|..|++|++...+. .....+. +..++|+.+.|. ++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLa----------------Gs~g~it~~d~d-~~ 230 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLA----------------GSLGNITSIDFD-SD 230 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhh----------------ccCCCcceeeec-CC
Confidence 344556667778999999 6788899999999999976541 2222333 344556666666 78
Q ss_pred CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 462 (882)
+..+++++.|+.+++|++...+... .+.+
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r~~~---------------------------------------------------TLsG 259 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLRLRH---------------------------------------------------TLSG 259 (459)
T ss_pred CceEEeecCCCceeeeeccchhhhh---------------------------------------------------hhcc
Confidence 8889999999999999999876543 2568
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCC
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 542 (882)
|.+.|+++.|..... .+++|+.|.+|++||+... .+.+++. ....+.+|+.+ ...++++-.|+
T Consensus 260 HtdkVt~ak~~~~~~-------------~vVsgs~DRtiK~WDl~k~-~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHS-------------RVVSGSADRTIKLWDLQKA-YCSKTVL-PGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred cccceeeehhhcccc-------------ceeeccccchhhhhhhhhh-heecccc-ccccccceEec--ceeeeeccccc
Confidence 999999999988765 6999999999999999885 4444433 23456666665 56788999999
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc--CCCCcEEEEE
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK--DFGDPMKVTV 620 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~ 620 (882)
.|++||++.......+.. .+.|+++..++++..|++++.|.++.+.|+++......+...+ .....+.+.|
T Consensus 323 kvRfwD~Rs~~~~~sv~~-------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPL-------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ceEEEeccCCceeeEeec-------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 999999997665554432 2589999999999999999999999999999988888776322 2345899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCC--CeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 621 DPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGE--VITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 621 spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
||++.|+|+|+.||.|+||++.++++...+..... .|+++.|+|.|..|++++.++.+.+|
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999999999888876444 59999999999999999999999999
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.5e-26 Score=246.88 Aligned_cols=270 Identities=17% Similarity=0.242 Sum_probs=215.4
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
..|.+.|+|+.|+ +||++||+|+.|+.|.+|+... ...... .+.. | ....+
T Consensus 66 ~~h~~sv~CVR~S-~dG~~lAsGSDD~~v~iW~~~~-~~~~~~-fgs~---------------g-----------~~~~v 116 (942)
T KOG0973|consen 66 DDHDGSVNCVRFS-PDGSYLASGSDDRLVMIWERAE-IGSGTV-FGST---------------G-----------GAKNV 116 (942)
T ss_pred ccccCceeEEEEC-CCCCeEeeccCcceEEEeeecc-cCCccc-cccc---------------c-----------ccccc
Confidence 3478889999998 9999999999999999999874 111000 0000 0 00000
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
..+ .....+.+|+..|..++|+|++. ++++++.|++|.|||..+. +.+..+.+|...|..+
T Consensus 117 E~w-----k~~~~l~~H~~DV~Dv~Wsp~~~-------------~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 117 ESW-----KVVSILRGHDSDVLDVNWSPDDS-------------LLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV 177 (942)
T ss_pred cee-----eEEEEEecCCCccceeccCCCcc-------------EEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence 000 11345778999999999999998 9999999999999999886 8999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC----CCcEEEEEccCCce
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ----DKKINSFSIAAGKL 602 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~~~ 602 (882)
.|.|-|++||+-+.|++|++|++..-.....+.............+.+.|||||++|++.-. -..+.|.+-.+.+.
T Consensus 178 s~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~ 257 (942)
T KOG0973|consen 178 SWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV 257 (942)
T ss_pred EECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee
Confidence 99999999999999999999998765455555444444445567899999999999998642 23788999888888
Q ss_pred EEEEEeccCCCCcEEEEECCC-----CC------------EEEEEeCCCcEEEEEccCCeEEEEEcc-CCCCeEEEEECC
Q 047837 603 IRSFKQAKDFGDPMKVTVDPS-----GS------------YLVCSYSNKSICLYDFISGEMVAKAMG-HGEVITGVTFLP 664 (882)
Q Consensus 603 ~~~~~~~~~~~~v~~~~~spd-----g~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~ 664 (882)
-..|- +|..++.++.|+|. .+ .+|+|+.|++|-||.....+++..... ....|..|+|+|
T Consensus 258 ~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp 335 (942)
T KOG0973|consen 258 DKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP 335 (942)
T ss_pred eeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC
Confidence 88887 99999999999982 11 578999999999999988777665432 457899999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC
Q 047837 665 DCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 665 d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
||-.|+.+|.||+|.+...+..
T Consensus 336 dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 336 DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCeEEEEecCCeEEEEEcchH
Confidence 9999999999999999998753
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.4e-25 Score=204.80 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=209.2
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
....|.++.|+ .+|..+++++.|.++++||..+++.....
T Consensus 13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti--------------------------------------- 52 (311)
T KOG1446|consen 13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTI--------------------------------------- 52 (311)
T ss_pred CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEe---------------------------------------
Confidence 46778888888 89999999999999999999988765432
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcC--CCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGR--DRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
..+.-.|..++|..... .++.++. |.+|+..++.++ +.++.+.||...|.++
T Consensus 53 ------------~skkyG~~~~~Fth~~~-------------~~i~sStk~d~tIryLsl~dN-kylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 53 ------------NSKKYGVDLACFTHHSN-------------TVIHSSTKEDDTIRYLSLHDN-KYLRYFPGHKKRVNSL 106 (311)
T ss_pred ------------ecccccccEEEEecCCc-------------eEEEccCCCCCceEEEEeecC-ceEEEcCCCCceEEEE
Confidence 22233344444444333 3444444 889999999988 8999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC--ceEE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG--KLIR 604 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~--~~~~ 604 (882)
+.+|-+..+++++.|++|++||++..+..-.+... .-..+||+|.|-++|++.....|++||++.- .+..
T Consensus 107 ~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--------~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~ 178 (311)
T KOG1446|consen 107 SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--------GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT 178 (311)
T ss_pred EecCCCCeEEecccCCeEEeeEecCCCCceEEecC--------CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCce
Confidence 99998899999999999999999965544333222 2345799999999999998889999999863 3444
Q ss_pred EEEec-cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCe---EEEEECCCCCEEEEEeCCCeEEE
Q 047837 605 SFKQA-KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVI---TGVTFLPDCKHIVSVGGDGLQRV 680 (882)
Q Consensus 605 ~~~~~-~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~s~d~~~l~s~~~dg~i~v 680 (882)
++... ....+.+.|.|||||++|+.+...+.+++.|.-+|..+..+.++...- ...+|+||++++++++.||+|.+
T Consensus 179 tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 179 TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE
Confidence 45422 456789999999999999999999999999999999999988775433 57789999999999999999999
Q ss_pred EeCCCCCCCcccCCC--CCcccEEEecCCC
Q 047837 681 KEKYGILPPRNFAQP--AALSPIIFCEEED 708 (882)
Q Consensus 681 wd~~~~~~~~~~~~~--~~~~~~~~s~~~~ 708 (882)
|+++++.....+..+ .+...+-|.|.-.
T Consensus 259 w~~~tg~~v~~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 259 WNLETGKKVAVLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred EEcCCCcEeeEecCCCCCCccccccCCcee
Confidence 999988877766553 3333344444433
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.1e-27 Score=225.83 Aligned_cols=284 Identities=21% Similarity=0.283 Sum_probs=219.8
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
|...+..+.|-++...|++|+.|..|++|+....+.. + ...+.+..+.+..+.|.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~--~-----------------------~~tLaGs~g~it~~d~d 228 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE--L-----------------------ISTLAGSLGNITSIDFD 228 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhh--h-----------------------hhhhhccCCCcceeeec
Confidence 4555688999999999999999999999998765411 0 11123445567789999
Q ss_pred CCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 320 TSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 320 ~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
++++ +|+.+.|+.+++|+++..+.. .++.||++.|..+.|. .....+++|+.|.+|+.|
T Consensus 229 ~~~~~~iAas~d~~~r~Wnvd~~r~~---~TLsGHtdkVt~ak~~-----------------~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 229 SDNKHVIAASNDKNLRLWNVDSLRLR---HTLSGHTDKVTAAKFK-----------------LSHSRVVSGSADRTIKLW 288 (459)
T ss_pred CCCceEEeecCCCceeeeeccchhhh---hhhcccccceeeehhh-----------------ccccceeeccccchhhhh
Confidence 9987 677788999999999876443 3577777777666652 334449999999999999
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCC
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKK 478 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (882)
|+....+......... +..|+.++
T Consensus 289 Dl~k~~C~kt~l~~S~----------------------------------------------------cnDI~~~~---- 312 (459)
T KOG0288|consen 289 DLQKAYCSKTVLPGSQ----------------------------------------------------CNDIVCSI---- 312 (459)
T ss_pred hhhhhheecccccccc----------------------------------------------------ccceEecc----
Confidence 9998766554332221 11111111
Q ss_pred CccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceee
Q 047837 479 DDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKI 558 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 558 (882)
..+++|..|++|++||.++. .+......+. .|+++..++++..|.+++.|.++.+.|+++.+....+
T Consensus 313 -----------~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 313 -----------SDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred -----------eeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 16889999999999999887 6677777665 9999999999999999999999999999976655444
Q ss_pred eccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 047837 559 SRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICL 638 (882)
Q Consensus 559 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~i 638 (882)
.......+ ...+.+.|||++.|+++|+.||.|+||++.++++...+........|++++|+|.|.+|++++.++.+++
T Consensus 380 sA~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 380 SAEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred eccccccc--cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 33222222 3488999999999999999999999999999999999885444447999999999999999999999999
Q ss_pred E
Q 047837 639 Y 639 (882)
Q Consensus 639 w 639 (882)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 9
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=9.8e-27 Score=214.45 Aligned_cols=257 Identities=19% Similarity=0.255 Sum_probs=208.2
Q ss_pred CEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC-----------------CceeEEEeec
Q 047837 456 STLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR-----------------NFDLIESIDD 518 (882)
Q Consensus 456 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~-----------------~~~~~~~~~~ 518 (882)
....+..|.+.+.+.+|+++|. ++|+|+.|..|+|+|++. ....++++..
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~-------------lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD 170 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGS-------------LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD 170 (430)
T ss_pred ceEEEeecccceeeeeeCCCCc-------------EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh
Confidence 3456788999999999999998 999999999999999872 1245778889
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc
Q 047837 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 519 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 598 (882)
|.+.|+++.|+|....|++++.|++|+++|+....... .+..+....+|.++.|+|.|.+|++|.+...+++||+.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr----A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR----AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHH----HHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 99999999999999999999999999999997543221 11222233589999999999999999999999999999
Q ss_pred CCceEEEEE-eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-CC-CCeEEEEECCCCCEEEEEeCC
Q 047837 599 AGKLIRSFK-QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG-HG-EVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 599 ~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~-~~v~~l~~s~d~~~l~s~~~d 675 (882)
+-++...-. ...|.+.|+++.+|+.|++.++++.||.|+|||--+++++.++.. |. ..|.+..|..+|+|+++.|.|
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 988765443 347899999999999999999999999999999999999888753 54 479999999999999999999
Q ss_pred CeEEEEeCCCCCCCcccCCCCC------cccEEEecCCCeEEEecccccccccCcCcCCC
Q 047837 676 GLQRVKEKYGILPPRNFAQPAA------LSPIIFCEEEDQKCRMDSVNMSFKKDLDQIGP 729 (882)
Q Consensus 676 g~i~vwd~~~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (882)
..+++|++.+++.+..+..-+. ..+.+|.-.+++++..+.....+..|....+.
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence 9999999999988877743322 23456666677666666555554444433333
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=207.83 Aligned_cols=279 Identities=20% Similarity=0.294 Sum_probs=222.6
Q ss_pred eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCC
Q 047837 323 KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLAL 402 (882)
Q Consensus 323 ~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~ 402 (882)
++++|+.+..|.-+++.-.... .. ...-+.+...-.+..|..+|+++|++ +.++|+|+.|.+|++||+..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~-----~~--~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k 72 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKG-----CT--DSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRK 72 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccc-----cc--cccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccc
Confidence 4677888888888877533200 00 01111222223346789999999986 88999999999999999987
Q ss_pred CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccc
Q 047837 403 QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVL 482 (882)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 482 (882)
...+.. +-.|.+.|+++.|.+...
T Consensus 73 ~~qlg~---------------------------------------------------ll~HagsitaL~F~~~~S----- 96 (362)
T KOG0294|consen 73 RKQLGI---------------------------------------------------LLSHAGSITALKFYPPLS----- 96 (362)
T ss_pred hhhhcc---------------------------------------------------eeccccceEEEEecCCcc-----
Confidence 665432 446899999999998763
Q ss_pred eeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccc
Q 047837 483 EEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 483 ~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
.+.|++|+.||.|.+|+... +.++..+++|...|+.++.+|.+++-++.+.|+.++.||+-+++........+
T Consensus 97 ------~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 97 ------KSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred ------hhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC
Confidence 12699999999999999876 58999999999999999999999999999999999999999887665554333
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
..+.+.|+|.|.+++.+..+ .|-+|.+.+.+....+. ....+.++.|- ++.+|++|.+|+.|.+||..
T Consensus 170 -------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~---~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 170 -------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE---NPKRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred -------cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh---ccccceeeeec-CCceEEEecCCceEEEeccC
Confidence 34459999999998888775 59999998887777664 23456666664 56789999999999999999
Q ss_pred CCeEEEEEccCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 643 SGEMVAKAMGHGEVITGVTF--LPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 643 ~~~~~~~~~~h~~~v~~l~~--s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
+..++..+.+|..+|.++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999999999999984 467899999999999999999765
No 92
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6e-25 Score=236.12 Aligned_cols=253 Identities=18% Similarity=0.219 Sum_probs=187.9
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|.+++|+|.++++|++++.|++|++||+.++.....
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------------------------------------- 113 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-------------------------------------- 113 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--------------------------------------
Confidence 456777888888844888999999999999999976432100
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
.......+.+|...|.+++|+|.+. ++|++|+.|+.|+|||+.++ .....+.+|...|.++
T Consensus 114 ------~~~~l~~L~gH~~~V~~l~f~P~~~------------~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 114 ------ISDPIVHLQGHTKKVGIVSFHPSAM------------NVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSL 174 (493)
T ss_pred ------cCcceEEecCCCCcEEEEEeCcCCC------------CEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEE
Confidence 0011234678999999999999753 28999999999999999987 6777888999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe----CCCcEEEEEccCCce
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG----QDKKINSFSIAAGKL 602 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~d~~v~iwd~~~~~~ 602 (882)
+|+|+|.+|++++.|++|++||++++.....+. .|. ......+.|.+++..+++++ .|+.|++||+++...
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~----~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHA----SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCC----CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 999999999999999999999999766443332 221 12345678899888877654 478999999987543
Q ss_pred -EEEEEeccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEEccCCeEEEEEcc-CCCCeEEEEECCCCCEEEEEeCCCeEE
Q 047837 603 -IRSFKQAKDFGDPMKVTVDPSGSYLVCSY-SNKSICLYDFISGEMVAKAMG-HGEVITGVTFLPDCKHIVSVGGDGLQR 679 (882)
Q Consensus 603 -~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~~~dg~i~ 679 (882)
+.... ......+....|++++++|++++ .|+.|++||+.+++++..... +..++..++|.|... +=...--..|
T Consensus 250 p~~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r 326 (493)
T PTZ00421 250 PYSTVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIAR 326 (493)
T ss_pred ceeEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeE
Confidence 33332 12334566678999999999887 599999999999988776543 456788999988532 1112222446
Q ss_pred EEeCC
Q 047837 680 VKEKY 684 (882)
Q Consensus 680 vwd~~ 684 (882)
+|.+.
T Consensus 327 ~~~l~ 331 (493)
T PTZ00421 327 FYALT 331 (493)
T ss_pred EEEec
Confidence 66654
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.7e-26 Score=222.72 Aligned_cols=274 Identities=18% Similarity=0.249 Sum_probs=225.6
Q ss_pred CCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
.+.|+.++|+|....-+|+++. -.+.+|+..+......
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~----------------------------------------- 63 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT----------------------------------------- 63 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-----------------------------------------
Confidence 4678899999766666776664 4799999877554332
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
+......+.++.|..+|+ ++|+|...|.|+|||..+. ..++.+.+|+.+|..+.|+
T Consensus 64 ----------~srFk~~v~s~~fR~DG~-------------LlaaGD~sG~V~vfD~k~r-~iLR~~~ah~apv~~~~f~ 119 (487)
T KOG0310|consen 64 ----------FSRFKDVVYSVDFRSDGR-------------LLAAGDESGHVKVFDMKSR-VILRQLYAHQAPVHVTKFS 119 (487)
T ss_pred ----------HHhhccceeEEEeecCCe-------------EEEccCCcCcEEEeccccH-HHHHHHhhccCceeEEEec
Confidence 223455677778887777 8999999999999996553 5778899999999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCC-ceEEEE
Q 047837 530 C-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAG-KLIRSF 606 (882)
Q Consensus 530 ~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~ 606 (882)
| ++..|++|+.|+.+++||+.+... .....+|.+.|.+.+|+|.. ..+++|+.||+|++||+++. ..+.++
T Consensus 120 ~~d~t~l~s~sDd~v~k~~d~s~a~v------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDKVVKYWDLSTAYV------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred ccCCeEEEecCCCceEEEEEcCCcEE------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 9 566777899999999999997653 12334566899999999965 48999999999999999987 666777
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC-eEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG-EMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.|..+|..+.+-|.|..+|+++.+ .|+|||+.+| +.+..+..|...|+||++..++..|++++-|+.|++||+.+
T Consensus 194 ---nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 194 ---NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred ---cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 588999999999999999999754 7999999965 55556666999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCcccEEEecCCCeEEEecccccc
Q 047837 686 ILPPRNFAQPAALSPIIFCEEEDQKCRMDSVNMS 719 (882)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 719 (882)
.+....+..+.++-.+..++++..++..-.....
T Consensus 270 ~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 270 YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred eEEEEeeecccceeeEEecCCCceEEEeccccee
Confidence 9999999999999999999988766665544444
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=218.86 Aligned_cols=284 Identities=15% Similarity=0.203 Sum_probs=229.1
Q ss_pred CCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 308 PTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
..+..+.+++|+|... -++..+.-.+.+|+..+...... + ..+...|.++.|- .||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~---~----------------srFk~~v~s~~fR-~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKT---F----------------SRFKDVVYSVDFR-SDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhh---H----------------HhhccceeEEEee-cCCeEE
Confidence 3456677899999763 34455566788888866543321 1 2235566677776 899999
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
+.|...|.|+++|+.+...++ .+.+|..+
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---------------------------------------------------~~~ah~ap 112 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---------------------------------------------------QLYAHQAP 112 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---------------------------------------------------HHhhccCc
Confidence 999999999999966533322 25688999
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLV 545 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~ 545 (882)
|..+.|+|... ..+++|+.|+.+++||+.+.. ....+.+|++.|.+.+|+| ++..+++|+.||.|+
T Consensus 113 v~~~~f~~~d~------------t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 113 VHVTKFSPQDN------------TMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred eeEEEecccCC------------eEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 99999998776 388999999999999999874 4668999999999999999 566899999999999
Q ss_pred EEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc-eEEEEEeccCCCCcEEEEECCCC
Q 047837 546 VRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK-LIRSFKQAKDFGDPMKVTVDPSG 624 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~spdg 624 (882)
+||++.... . ...+.|..+|..+.+-|.|..+++++. ..|++||+.+|. .+..+. .|...|+|+++..++
T Consensus 180 l~DtR~~~~-~-----v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 180 LWDTRSLTS-R-----VVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDS 250 (487)
T ss_pred EEEeccCCc-e-----eEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh--cccceEEEEEeecCC
Confidence 999986531 1 123445579999999999999999865 579999999655 444443 599999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 625 SYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 625 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
..|++++-|+.+++||+.+.+.++.+. ..++|.+++.+||++.++.|..+|.+.+-+...
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999999999999999999999887 789999999999999999999999988875443
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=237.20 Aligned_cols=210 Identities=14% Similarity=0.229 Sum_probs=165.3
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|..+.|+ ..++|++++.|.+||+|++....++.
T Consensus 366 ~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~--------------------------------------- 404 (712)
T KOG0283|consen 366 KGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLK--------------------------------------- 404 (712)
T ss_pred hccchhheecccc--cCCeeEeccccccEEeecCCCcceee---------------------------------------
Confidence 4455555555565 77899999999999999999776653
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
.-.|..-|+|++|+|... +++++|+-|+.++||++... .+.....-..-|+++
T Consensus 405 -------------~F~HndfVTcVaFnPvDD------------ryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAv 457 (712)
T KOG0283|consen 405 -------------VFSHNDFVTCVAFNPVDD------------RYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAV 457 (712)
T ss_pred -------------EEecCCeeEEEEecccCC------------CcEeecccccceEEeecCcC--eeEeehhhhhhheeE
Confidence 237999999999999765 49999999999999999864 343444455889999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeec--cceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISR--RHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLI 603 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~ 603 (882)
+|.|||++.++|+.+|.+++|+...........- ..........|+.+.|.|.. ..|++.+.|..|||||.++.+++
T Consensus 458 cy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 458 CYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred EeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 9999999999999999999999875433222111 11111112389999999854 36778899999999999999999
Q ss_pred EEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 047837 604 RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 604 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~ 644 (882)
..|+.......-....|+.||++|+++++|..|+||+....
T Consensus 538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 538 HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 99985555566678899999999999999999999998654
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=203.79 Aligned_cols=286 Identities=20% Similarity=0.298 Sum_probs=204.5
Q ss_pred CCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 366 ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 366 ~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
+.+|...|++++|+ .||+.|+|++.|++|++|++....... |..+. .....+.
T Consensus 82 LKgH~~~vt~~~Fs-SdGK~lat~~~Dr~Ir~w~~~DF~~~e-----Hr~~R---------------------~nve~dh 134 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFS-SDGKKLATISGDRSIRLWDVRDFENKE-----HRCIR---------------------QNVEYDH 134 (420)
T ss_pred hhccCCceeeeEEc-CCCceeEEEeCCceEEEEecchhhhhh-----hhHhh---------------------ccccCCC
Confidence 35688888999998 899999999999999999998643211 11110 0111123
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEE---------------------EEecCCCCCccceeccCCceEEEEEcCCCcEEEE
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSL---------------------SFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLY 504 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iw 504 (882)
...+.|+||-+.+++..|.+.-.++ .|....+-+....-+..++.+|++++.|..|.+|
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw 214 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLW 214 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEE
Confidence 3445555555554444443322221 1111111112222344556799999999999999
Q ss_pred EcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCcc--CccceeeeccceecccCCceEEEEEecCCCE
Q 047837 505 DVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE--TNSAYKISRRHQQLASQGTVYDMDIDPTMEV 582 (882)
Q Consensus 505 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 582 (882)
++. + +.+..+......-+..+.||+|+++++++.---+++|.+-- ........+.....+|...|..++|+++.+.
T Consensus 215 ~lk-G-q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 215 DLK-G-QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred ecC-C-ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 998 4 67777776777778899999999999999988899998742 2333444455566678899999999999999
Q ss_pred EEEEeCCCcEEEEEccC-------CceEEEEE--eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-
Q 047837 583 VITVGQDKKINSFSIAA-------GKLIRSFK--QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG- 652 (882)
Q Consensus 583 l~~~~~d~~v~iwd~~~-------~~~~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 652 (882)
+++.+.||++++||+.- .+.+++.. .+...+....+.++|.|+.||.+.. ..+.+|..++|+..-.+..
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHh
Confidence 99999999999999852 12233221 1233456679999999999998754 4799999999987776654
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 653 HGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 653 h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
|...|.+++|++||++++|++ |..+++..
T Consensus 372 h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 999999999999999999888 67888876
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6e-25 Score=225.79 Aligned_cols=239 Identities=19% Similarity=0.311 Sum_probs=199.6
Q ss_pred eeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe
Q 047837 244 KNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK 323 (882)
Q Consensus 244 ~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 323 (882)
++++.|+++|.+|++|..+|.|.|||..+.+.+..+
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------------------------------- 255 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------------------------------- 255 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhccccccc--------------------------------------------
Confidence 388999999999999999999999998865444332
Q ss_pred EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCC
Q 047837 324 LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQ 403 (882)
Q Consensus 324 ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~ 403 (882)
.+ .|...|.+++|. +..+.+|+.|+.|..+|++..
T Consensus 256 ---------------------------~~---------------~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 256 ---------------------------RG---------------SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred ---------------------------cC---------------CcCceeEEEecc---CceEEEecCCCcEEEEEEecc
Confidence 11 145566666765 678999999999999999876
Q ss_pred ceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccce
Q 047837 404 SELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLE 483 (882)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 483 (882)
+.... .+.+|...|..+.|++++.
T Consensus 291 ~~~~~--------------------------------------------------~~~~H~qeVCgLkws~d~~------ 314 (484)
T KOG0305|consen 291 QHVVS--------------------------------------------------TLQGHRQEVCGLKWSPDGN------ 314 (484)
T ss_pred hhhhh--------------------------------------------------hhhcccceeeeeEECCCCC------
Confidence 54321 1568999999999999998
Q ss_pred eccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEe--CCCeEEEEeCccCccceeeec
Q 047837 484 EVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCS--ADRSLVVRDVVETNSAYKISR 560 (882)
Q Consensus 484 ~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~ 560 (882)
++|+|+.|+.+.|||.... .+...+..|...|.+++|+| ....||+|+ .|+.|++||..++.....+..
T Consensus 315 -------~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 315 -------QLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred -------eeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 9999999999999999655 77788889999999999999 667888765 599999999997766555433
Q ss_pred cceecccCCceEEEEEecCCCEEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 047837 561 RHQQLASQGTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICL 638 (882)
Q Consensus 561 ~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~i 638 (882)
. ..|..+.|++..+.|+++. .+..|.||++.+-+.+..+. +|...|..+++||||..+++|+.|.++++
T Consensus 387 g-------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 387 G-------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred C-------CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 3 4899999999998777654 45689999999999999998 99999999999999999999999999999
Q ss_pred EEccCC
Q 047837 639 YDFISG 644 (882)
Q Consensus 639 wd~~~~ 644 (882)
|++-..
T Consensus 458 w~~f~~ 463 (484)
T KOG0305|consen 458 WNLFDE 463 (484)
T ss_pred ccccCC
Confidence 998664
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=209.43 Aligned_cols=283 Identities=20% Similarity=0.233 Sum_probs=230.9
Q ss_pred CCCcEEEeecCC-CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 310 IPNAIACQFSTS-EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 310 ~~~~~~~~~s~~-~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
.+.+.++...+. ...++++.|..+.++|...++... .+.||+..|..+. ++ ++...+++
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~----------------~~-~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVK----------------FH-KDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEE----------------ec-cchhheee
Confidence 356677777776 567788889999999998775433 5666665555555 44 78888999
Q ss_pred eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 389 CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
++.|..|++|........ .....|+.+|+
T Consensus 279 aSad~~i~vws~~~~s~~---------------------------------------------------~~~~~h~~~V~ 307 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEP---------------------------------------------------TSSRPHEEPVT 307 (506)
T ss_pred cCCcceEEeeccccccCc---------------------------------------------------cccccccccce
Confidence 999999999998765421 23568999999
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-cCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-DHSAAVTAVKFTCNGRKILSCSADRSLVVR 547 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~vw 547 (882)
.+..+|.+. |+++++.|+...+.|++++..+..... ...-.+++.+|+|||..|.+|..|+.+++|
T Consensus 308 ~ls~h~tge-------------YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 308 GLSLHPTGE-------------YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred eeeeccCCc-------------EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 999999998 999999999999999998844433222 233458999999999999999999999999
Q ss_pred eCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEE
Q 047837 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 548 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 627 (882)
|+.......++ .+|.++|..++|+.+|-+|+++++|+.|++||++..+..+++.. ....++.++.|.+.|.||
T Consensus 375 dlks~~~~a~F------pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 375 DLKSQTNVAKF------PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred EcCCccccccC------CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec-cccccceeEEEcCCCCeE
Confidence 99976644433 34568999999999999999999999999999999988888873 333479999999999999
Q ss_pred EEEeCCCcEEEEEcc--CCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 628 VCSYSNKSICLYDFI--SGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
+.++.|=+|++++-. +..++..+..|.+..+.+.|..+.++|+++|.|..++++.+
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999887667776643 45677888889999999999999999999999999998864
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.1e-25 Score=202.92 Aligned_cols=243 Identities=20% Similarity=0.331 Sum_probs=197.4
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCC--EEEEEc--CEE
Q 047837 35 SHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGE--HLVTVG--GYI 110 (882)
Q Consensus 35 ~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~--~Las~~--~~i 110 (882)
++.+..|. +.|+|+|+ +|.|+|+|+. |-+|+|||+.....+..+-.|.+.|+++.|.++-. .|++|+ |.|
T Consensus 36 lF~~~aH~--~sitavAV--s~~~~aSGss--DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHA--GSITALAV--SGPYVASGSS--DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred cccccccc--cceeEEEe--cceeEeccCC--CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 55667787 99999999 5789999966 77999999999999999999999999999999875 788877 999
Q ss_pred EEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccccccc
Q 047837 111 YLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKE 189 (882)
Q Consensus 111 ~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (882)
.||+....+++..++.|. +.|+.++.+|.+++.++.++ +.++.||+-.++.... +.+.
T Consensus 110 ~iw~~~~W~~~~slK~H~--~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v--------~~L~----------- 168 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHK--GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV--------LNLK----------- 168 (362)
T ss_pred EEEEcCCeEEeeeecccc--cccceeEecCCCceEEEEcCCceeeeehhhcCcccee--------eccC-----------
Confidence 999999999999999998 67999999999999777765 7899999987765100 0000
Q ss_pred ceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeee
Q 047837 190 SYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFD 269 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd 269 (882)
. ....+.|+|.|.+++++..+ .|-+|.
T Consensus 169 --------------------------------~--------------------~at~v~w~~~Gd~F~v~~~~-~i~i~q 195 (362)
T KOG0294|consen 169 --------------------------------N--------------------KATLVSWSPQGDHFVVSGRN-KIDIYQ 195 (362)
T ss_pred --------------------------------C--------------------cceeeEEcCCCCEEEEEecc-EEEEEe
Confidence 0 00458899999999888755 588999
Q ss_pred cccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeee
Q 047837 270 IQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCV 349 (882)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~ 349 (882)
+++......+. ....+.++.|...+.+++|+.|+.|.+||.++. .....
T Consensus 196 ~d~A~v~~~i~----------------------------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~ 244 (362)
T KOG0294|consen 196 LDNASVFREIE----------------------------NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTE 244 (362)
T ss_pred cccHhHhhhhh----------------------------ccccceeeeecCCceEEEecCCceEEEeccCCC---cccee
Confidence 98866655443 113456788888899999999999999999874 44456
Q ss_pred eecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCC
Q 047837 350 LVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQ 403 (882)
Q Consensus 350 ~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~ 403 (882)
+.+|..+|.++.+. ..+++.+|+|++.||.|++||++..
T Consensus 245 ~~AH~~RVK~i~~~---------------~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 245 FLAHENRVKDIASY---------------TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eecchhheeeeEEE---------------ecCCceEEEEeccCceEEEEEcccc
Confidence 78888887777643 2267899999999999999999876
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-24 Score=199.85 Aligned_cols=277 Identities=17% Similarity=0.195 Sum_probs=214.7
Q ss_pred CCCCCcEEEeecCC-CeEE-EEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 308 PTIPNAIACQFSTS-EKLV-VVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 308 ~~~~~~~~~~~s~~-~~ll-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
|....+-+++|||. ..++ +++.|++||+|+++....... . ....|.++|.+++|+ .+|..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-k----------------a~~~~~~PvL~v~Ws-ddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-K----------------AQQSHDGPVLDVCWS-DDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-h----------------hhhccCCCeEEEEEc-cCCce
Confidence 45556778999994 4455 556699999999976321111 1 123477888888888 89999
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
+++|+.|+.+++||+.+++.. .+..|++
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~----------------------------------------------------~v~~Hd~ 114 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVS----------------------------------------------------QVAAHDA 114 (347)
T ss_pred EEeeccCCceEEEEccCCCee----------------------------------------------------eeeeccc
Confidence 999999999999999987643 3668999
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLV 545 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 545 (882)
+|.++.|-+... -..|+||+.|.+|+.||.+.. .++.++. -.+.+.++.. -..+++.+..+..|.
T Consensus 115 pvkt~~wv~~~~-----------~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 115 PVKTCHWVPGMN-----------YQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYAADV--LYPMAVVATAERHIA 179 (347)
T ss_pred ceeEEEEecCCC-----------cceeEecccccceeecccCCC-Ceeeeee-ccceeeehhc--cCceeEEEecCCcEE
Confidence 999999987654 127999999999999999876 5555554 4556666655 455888899999999
Q ss_pred EEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC--ceEEEEEeccC-------CCCcE
Q 047837 546 VRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG--KLIRSFKQAKD-------FGDPM 616 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~-------~~~v~ 616 (882)
+|+++.+....+..... -.-.+++++..+|....+.|+-+|.+.+..+..+ +.-.+|++|.. -..|+
T Consensus 180 vynL~n~~te~k~~~Sp----Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESP----LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred EEEcCCCcchhhhhcCc----ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 99997554333221111 1247899999999998899999999999999887 44445554332 12467
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEe
Q 047837 617 KVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 617 ~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
+++|+|.-..|++++.||+..+||-+....+...+.|..+|++.+|+.+|.+++-+.
T Consensus 256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 899999999999999999999999988888888888999999999999999988664
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=228.26 Aligned_cols=267 Identities=17% Similarity=0.251 Sum_probs=218.9
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCC
Q 047837 376 VARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRG 455 (882)
Q Consensus 376 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 455 (882)
+..+.+.+++|.|||+||.|++|+.......... .
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~---------------------------------------------~ 64 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST---------------------------------------------P 64 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCccc---------------------------------------------c
Confidence 3334478889999999999999998754321100 0
Q ss_pred CEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCCEEEEEE-ccCCC
Q 047837 456 STLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAAVTAVKF-TCNGR 533 (882)
Q Consensus 456 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~-s~~~~ 533 (882)
-...+..|.+.|..++...+++ .+++++.|-+|++|+..... -++.++..|.+.|.++++ -++..
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~-------------tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~ 131 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGK-------------TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE 131 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCC-------------ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCce
Confidence 0123568999999998888887 79999999999999998753 467788899999999999 77888
Q ss_pred EEEEEeCCCeEEEEeCccCcc--cee---eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe
Q 047837 534 KILSCSADRSLVVRDVVETNS--AYK---ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ 608 (882)
Q Consensus 534 ~l~s~~~dg~i~vwd~~~~~~--~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 608 (882)
.+|+|+-|+.|.+||++++.. ... ........++...|++++..+.|..+++|+..+.+++||.++++.+..+.
T Consensus 132 lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr- 210 (735)
T KOG0308|consen 132 LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR- 210 (735)
T ss_pred eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-
Confidence 999999999999999997633 111 11111112566799999999999999999999999999999999999998
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-C
Q 047837 609 AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI-L 687 (882)
Q Consensus 609 ~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~-~ 687 (882)
+|...|..+..++||..+++++.||+|++||+...+++.++..|...|+++..+|+-+++.+|+.||.|..=|+++. .
T Consensus 211 -GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 211 -GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred -ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999884 2
Q ss_pred CCcccCCCCCcccEE
Q 047837 688 PPRNFAQPAALSPII 702 (882)
Q Consensus 688 ~~~~~~~~~~~~~~~ 702 (882)
....+....++..+.
T Consensus 290 ~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 290 STLICKEDAPVLKLH 304 (735)
T ss_pred heEeecCCCchhhhh
Confidence 333344444444333
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.6e-25 Score=202.60 Aligned_cols=327 Identities=22% Similarity=0.320 Sum_probs=208.6
Q ss_pred eEEEEECCCceee-----EEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceee--eeeecCCcccceeEEEEc
Q 047837 69 AVLVWDCANLAFI-----SELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV--MKLKANSSCSAITSACFS 139 (882)
Q Consensus 69 ~I~vwd~~t~~~~-----~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~--~~~~~~~~~~~v~~l~fs 139 (882)
.+.-|+.+..... ..|++|.+.|++|+||.||++||+++ +.|+||++.+-+.. +.+...-.-+..+.++|+
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 3555666554433 45789999999999999999999998 99999999874321 111111112567899999
Q ss_pred cCCCEEEEEC-C-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEE
Q 047837 140 SDAKFIVTAG-K-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTI 217 (882)
Q Consensus 140 ~d~~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (882)
||.+-+++.- . +.+++|.+...+- +....|.-+..
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~d---------G~~~~~~v~~D---------------------------------- 178 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTD---------GSGSHHFVHID---------------------------------- 178 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeeccc---------CCCCccccccc----------------------------------
Confidence 9988666553 3 5799998753321 11111111110
Q ss_pred EEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccch
Q 047837 218 YALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTA 297 (882)
Q Consensus 218 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (882)
.......|.-.+..+-....+.+|++++.|..|.+|++. |+.+..+.-.+
T Consensus 179 ---------------~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-------------- 228 (420)
T KOG2096|consen 179 ---------------NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-------------- 228 (420)
T ss_pred ---------------ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--------------
Confidence 000001111122345566778899999999999999999 87776664211
Q ss_pred hhhccccccCCCCCCcEEEeecCCCeEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCccee
Q 047837 298 KATELYFKLTPTIPNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCV 376 (882)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~ 376 (882)
..-..++.+|+|++++.++ .-.|++|.+-- +..+.+..+.-...+.+|...|..+
T Consensus 229 -------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f-----------~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 229 -------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF-----------TKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred -------------ccccceeeCCCCcEEEEecCCCCceEEEEEe-----------ccCcchhhhhhhheeccchhheeee
Confidence 1123578999999887655 88899998721 1122222222222346788888888
Q ss_pred eeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCC
Q 047837 377 ARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGS 456 (882)
Q Consensus 377 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 456 (882)
+|+ ++...++|.+.||++++||.+-.-...+. +.++-.+ .
T Consensus 285 aFs-n~S~r~vtvSkDG~wriwdtdVrY~~~qD--------------pk~Lk~g-------------------------~ 324 (420)
T KOG2096|consen 285 AFS-NSSTRAVTVSKDGKWRIWDTDVRYEAGQD--------------PKILKEG-------------------------S 324 (420)
T ss_pred eeC-CCcceeEEEecCCcEEEeeccceEecCCC--------------chHhhcC-------------------------C
Confidence 888 89999999999999999998743322110 0000000 0
Q ss_pred EEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEE
Q 047837 457 TLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKIL 536 (882)
Q Consensus 457 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 536 (882)
..+....+.-..++.+|.++ .||.. ....+++|..+++......-..|...|.+|.|+++|++++
T Consensus 325 -~pl~aag~~p~RL~lsP~g~-------------~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 325 -APLHAAGSEPVRLELSPSGD-------------SLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIA 389 (420)
T ss_pred -cchhhcCCCceEEEeCCCCc-------------EEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEe
Confidence 00111122223667777776 45443 4457999998887444444456999999999999999999
Q ss_pred EEeCCCeEEEEe
Q 047837 537 SCSADRSLVVRD 548 (882)
Q Consensus 537 s~~~dg~i~vwd 548 (882)
+++ |..+++..
T Consensus 390 tcG-dr~vrv~~ 400 (420)
T KOG2096|consen 390 TCG-DRYVRVIR 400 (420)
T ss_pred eec-ceeeeeec
Confidence 988 45677765
No 103
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=232.08 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=225.7
Q ss_pred eeeeEEEecCCCEEEEEecCCeEEeeecccceeccc-ccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC-
Q 047837 243 VKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGT-LHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST- 320 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 320 (882)
.+.+..|. ...+++++.+++|++|+..++..+.. + .|| .+.+.+++|..
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l--------~GH-------------------~g~V~~l~~~~~ 260 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL--------VGH-------------------FGGVWGLAFPSG 260 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeecccceEEEeec--------cCC-------------------CCCceeEEEecC
Confidence 33556666 56799999999999999999887754 3 344 44555788876
Q ss_pred CCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEec
Q 047837 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 321 ~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~ 400 (882)
++.++.|+.|.++++||..+++. ...+.+|.+.+..+. .....+++|+.|.+|++|++
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C---~~~l~gh~stv~~~~-------------------~~~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGEC---THSLQGHTSSVRCLT-------------------IDPFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcE---EEEecCCCceEEEEE-------------------ccCceEeeccCCceEEEEec
Confidence 45678888899999999988754 346777777776665 35667888999999999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
+++..+. ++.+|.+.|.++..+ +.
T Consensus 319 ~n~~~l~---------------------------------------------------l~~~h~~~V~~v~~~--~~--- 342 (537)
T KOG0274|consen 319 TNGACLN---------------------------------------------------LLRGHTGPVNCVQLD--EP--- 342 (537)
T ss_pred cCcceEE---------------------------------------------------EeccccccEEEEEec--CC---
Confidence 9776543 345699999999998 33
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeec
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISR 560 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 560 (882)
++++|+.|++|++||+.+. ++++.+.+|...|.++.+... ..+++|+.|++|++||+.+...+.....
T Consensus 343 ----------~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 343 ----------LLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred ----------EEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc
Confidence 8999999999999999976 999999999999999988554 8999999999999999997733333333
Q ss_pred cceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 561 RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 561 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
.| ..-+..+. ..+++|++++.|++|++||..++++++.+... |...++.+++. ...+++++.||++++||
T Consensus 411 ~h-----~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 411 GH-----TSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred CC-----cccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 33 24444443 45789999999999999999999999999832 66888888886 56788889999999999
Q ss_pred ccCCeEEEEEccCC
Q 047837 641 FISGEMVAKAMGHG 654 (882)
Q Consensus 641 ~~~~~~~~~~~~h~ 654 (882)
+++++....+..+.
T Consensus 481 l~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 481 LRSGTLIRTLLSTD 494 (537)
T ss_pred cccCchhhhhhhcc
Confidence 99999888774443
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.9e-25 Score=202.41 Aligned_cols=333 Identities=17% Similarity=0.264 Sum_probs=243.2
Q ss_pred ceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEE
Q 047837 78 LAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLK 154 (882)
Q Consensus 78 ~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~ 154 (882)
.++++.|.||+++|..++-......+.+++ .+.+||.+++|.++.++.+|. +.|+++.|++.+.++++++. ++..
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~--GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT--GSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc--cceeeEEeccccceEEEccCCcchH
Confidence 356677889999999999888777887777 999999999999999999998 99999999999999999865 7899
Q ss_pred EEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCce
Q 047837 155 FWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLS 234 (882)
Q Consensus 155 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~ 234 (882)
||...-.-. ++... .-..|..
T Consensus 216 IW~~av~~~----vP~~~-a~~~hSs------------------------------------------------------ 236 (481)
T KOG0300|consen 216 IWKAAVNWE----VPSNN-APSDHSS------------------------------------------------------ 236 (481)
T ss_pred HHHHhhcCc----CCCCC-CCCCCCc------------------------------------------------------
Confidence 997532211 00000 0000000
Q ss_pred eeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcE
Q 047837 235 VTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAI 314 (882)
Q Consensus 235 ~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (882)
... +- ..|...+--|-.
T Consensus 237 -----------------EeE-~e--~sDe~~~d~d~~------------------------------------------- 253 (481)
T KOG0300|consen 237 -----------------EEE-EE--HSDEHNRDTDSS------------------------------------------- 253 (481)
T ss_pred -----------------hhh-hh--cccccccccccc-------------------------------------------
Confidence 000 00 000000000000
Q ss_pred EEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCc
Q 047837 315 ACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGT 394 (882)
Q Consensus 315 ~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~ 394 (882)
-..| ..+|+ .++..+.+|. ..|.+..|. ..++.+++++.|.+
T Consensus 254 ---~~sD--------~~tiR----------vPl~~ltgH~----------------~vV~a~dWL-~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 254 ---EKSD--------GHTIR----------VPLMRLTGHR----------------AVVSACDWL-AGGQQMVTASWDRT 295 (481)
T ss_pred ---cccC--------Cceee----------eeeeeeeccc----------------cceEehhhh-cCcceeeeeecccc
Confidence 0000 01121 1222344444 445555555 78999999999999
Q ss_pred EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEec
Q 047837 395 IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSL 474 (882)
Q Consensus 395 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~ 474 (882)
..+||++++..+. .+.+|+...+.++-+|
T Consensus 296 AnlwDVEtge~v~---------------------------------------------------~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 296 ANLWDVETGEVVN---------------------------------------------------ILTGHDSELTHCSTHP 324 (481)
T ss_pred ceeeeeccCceec---------------------------------------------------cccCcchhccccccCC
Confidence 9999999987653 3668999999999999
Q ss_pred CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcc
Q 047837 475 SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNS 554 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 554 (882)
..+ ++++.+.|.+.++||++.....+..|++|...|+++.|..+. .+++++.|.+|++||++....
T Consensus 325 tQr-------------LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 325 TQR-------------LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred cce-------------EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccC
Confidence 988 999999999999999998777889999999999999998654 689999999999999987665
Q ss_pred ceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE---EeccCCCCcEEEEECCCC--CEEEE
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF---KQAKDFGDPMKVTVDPSG--SYLVC 629 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~spdg--~~l~~ 629 (882)
.....+.. .+++.++++..+..++.--.+..|++||+...+ +..+ ...+|..-|++++|..+- .-|++
T Consensus 391 plATIRtd------S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLft 463 (481)
T KOG0300|consen 391 PLATIRTD------SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFT 463 (481)
T ss_pred cceeeecC------CccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCccccccc
Confidence 55444433 589999999988999999999999999998443 3333 234889999999998653 34778
Q ss_pred EeCCCcEEEEEccCC
Q 047837 630 SYSNKSICLYDFISG 644 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~ 644 (882)
++.|..+.=|.+...
T Consensus 464 cGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 464 CGFDRMVAGWKINTP 478 (481)
T ss_pred ccccceeeeeEeccc
Confidence 889999999998654
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7.9e-24 Score=196.33 Aligned_cols=231 Identities=15% Similarity=0.239 Sum_probs=180.8
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|..++.+++|. +...+++|+.||.|+.+|+.++...
T Consensus 53 ~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~------------------------------------------ 88 (323)
T KOG1036|consen 53 HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNED------------------------------------------ 88 (323)
T ss_pred cCCceeeeecc--CCceEEEeccCceEEEEEecCCcce------------------------------------------
Confidence 44555566664 5677899999999999999876543
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
.+..|...|.++.+.+... .+++|+.|++|++||.+.. .....+. ....|.++..
T Consensus 89 ----------~igth~~~i~ci~~~~~~~-------------~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 89 ----------QIGTHDEGIRCIEYSYEVG-------------CVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred ----------eeccCCCceEEEEeeccCC-------------eEEEcccCccEEEEecccc-ccccccc-cCceEEEEec
Confidence 3568999999999998766 7999999999999999863 3333333 3447888776
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC----ceEE
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG----KLIR 604 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~----~~~~ 604 (882)
.|..|++|+.|..+.+||+++.....+.... .-.-.++++++-|++.-.++++-||.|.+=.+... +...
T Consensus 144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS----~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQRRES----SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred --cCCEEEEeecCceEEEEEcccccchhhhccc----cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence 6789999999999999999976544422111 11247899999999999999999998877665544 3334
Q ss_pred EEEeccC-------CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 605 SFKQAKD-------FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 605 ~~~~~~~-------~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
.|++|.. .-+|++|+|+|--..||+|+.||.|.+||+.+.+.+..+......|.+++|+.||..||+++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 4542211 136899999999999999999999999999999999999888788999999999999999874
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-25 Score=223.33 Aligned_cols=355 Identities=17% Similarity=0.284 Sum_probs=246.9
Q ss_pred CCCCEEEEeecCCCCeEEEEECCCce------eeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcc--eeeee
Q 047837 54 RDGRYVAAGESGPQPAVLVWDCANLA------FISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSA--MLVMK 123 (882)
Q Consensus 54 pdg~~la~g~~~~d~~I~vwd~~t~~------~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g--~~~~~ 123 (882)
|.++||.+| |.||.|++|+..... .+.++..|.+.|..++...+|+.|++++ -+|++|+...+ -++.+
T Consensus 35 ~~~ryLfTg--GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTG--GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEec--CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence 577899999 559999999987432 3677889999999999999999999999 99999999988 57777
Q ss_pred eecCCcccceeEEEE-ccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccc
Q 047837 124 LKANSSCSAITSACF-SSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWT 201 (882)
Q Consensus 124 ~~~~~~~~~v~~l~f-s~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 201 (882)
+..|. .-|.+++. .++..++|++|- +.|.+||++++.......... .++.
T Consensus 113 ir~H~--DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~--------~t~~------------------ 164 (735)
T KOG0308|consen 113 IRTHK--DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN--------VTVN------------------ 164 (735)
T ss_pred hhccc--chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc--------cccc------------------
Confidence 88777 99999999 778888888874 789999998763200000000 0000
Q ss_pred cCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccc
Q 047837 202 DNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHY 281 (882)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 281 (882)
.. .......+.+++.++.|..++.|+..+.+++||..+.+.+
T Consensus 165 ------sl---------------------------~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----- 206 (735)
T KOG0308|consen 165 ------SL---------------------------GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----- 206 (735)
T ss_pred ------cC---------------------------CCCCccceeeeecCCcceEEEecCcccceEEeccccccce-----
Confidence 00 0001122256666666666666666666666666554322
Q ss_pred cCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeec
Q 047837 282 SEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIK 361 (882)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~ 361 (882)
..++||
T Consensus 207 ------------------------------------------------------------------mkLrGH-------- 212 (735)
T KOG0308|consen 207 ------------------------------------------------------------------MKLRGH-------- 212 (735)
T ss_pred ------------------------------------------------------------------eeeecc--------
Confidence 124454
Q ss_pred ccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeec
Q 047837 362 NLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSV 441 (882)
Q Consensus 362 ~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (882)
...|.++..+ .||..+++++.||+|++||+..++++..
T Consensus 213 --------TdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl~T--------------------------------- 250 (735)
T KOG0308|consen 213 --------TDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCLAT--------------------------------- 250 (735)
T ss_pred --------ccceEEEEEc-CCCCeEeecCCCceEEeeeccccceeee---------------------------------
Confidence 4455555565 8999999999999999999987766432
Q ss_pred cccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCC
Q 047837 442 STQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSA 521 (882)
Q Consensus 442 ~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~ 521 (882)
+..|...|.++..+|+-. .+++|+.||.|..-|+++..+....++ ...
T Consensus 251 ------------------~~vH~e~VWaL~~~~sf~-------------~vYsG~rd~~i~~Tdl~n~~~~tlick-~da 298 (735)
T KOG0308|consen 251 ------------------YIVHKEGVWALQSSPSFT-------------HVYSGGRDGNIYRTDLRNPAKSTLICK-EDA 298 (735)
T ss_pred ------------------EEeccCceEEEeeCCCcc-------------eEEecCCCCcEEecccCCchhheEeec-CCC
Confidence 557888899999998877 899999999999999988534444443 556
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc
Q 047837 522 AVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~ 601 (882)
+|..+..+.+.+-+-+++.|+.|+-|..... ..+++.+++.. -+.|....+.+... .
T Consensus 299 Pv~~l~~~~~~~~~WvtTtds~I~rW~~~~~---------------------~~l~~s~~~~~-~~T~~~~~~~~~~~-t 355 (735)
T KOG0308|consen 299 PVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD---------------------IALSVSGDLDF-FSTDSNNHSCDLTN-T 355 (735)
T ss_pred chhhhhhccccCCceeeeccccceecCCccc---------------------cccccCCCCCc-ccccCCCccccccC-C
Confidence 7888888765556677788999999976521 13334444433 23344444444321 1
Q ss_pred eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE
Q 047837 602 LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~ 650 (882)
.-..+ .....+...++-.|.+++++-...|.+.+||+-.++.+..+
T Consensus 356 p~~vi---~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 356 PDSVI---PGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred Cceec---cCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 11222 23345667777788999999999999999999776665554
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.3e-24 Score=208.32 Aligned_cols=287 Identities=22% Similarity=0.357 Sum_probs=218.0
Q ss_pred eEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeee-eee-------------cC--CcccceeEEEEccCC
Q 047837 81 ISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVM-KLK-------------AN--SSCSAITSACFSSDA 142 (882)
Q Consensus 81 ~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~-~~~-------------~~--~~~~~v~~l~fs~d~ 142 (882)
...+..|.-+|.+|+++||++++.+++ ++|.-|++.+|+... .++ .+ .|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 455677999999999999999999999 999999999887441 111 11 244789999999999
Q ss_pred CEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEc
Q 047837 143 KFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALT 221 (882)
Q Consensus 143 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 221 (882)
++|++++. ..|.||+.++.+. .+.+.+|...|
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh--------v~~~~ghr~~V--------------------------------------- 247 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH--------VKVFKGHRGAV--------------------------------------- 247 (479)
T ss_pred cEEEecCCCceEEEecCcccch--------hhcccccccce---------------------------------------
Confidence 99999997 5789999988776 33355565555
Q ss_pred cCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhc
Q 047837 222 DAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATE 301 (882)
Q Consensus 222 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (882)
.+++|-.....|++++.|+.|++|+++....+.++.
T Consensus 248 -----------------------~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly--------------------- 283 (479)
T KOG0299|consen 248 -----------------------SSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY--------------------- 283 (479)
T ss_pred -----------------------eeeeeecCccceeeeecCCceEEEehhHhHHHHHHh---------------------
Confidence 788998888899999999999999999877766553
Q ss_pred cccccCCCCCCcEEEeecCCCeEEEEe-CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeecc
Q 047837 302 LYFKLTPTIPNAIACQFSTSEKLVVVY-GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC 380 (882)
Q Consensus 302 ~~~~~~~~~~~~~~~~~s~~~~ll~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~ 380 (882)
+|+..+.++....-++.++++ .|+++++|++..... .++.+| ...+.|++|-
T Consensus 284 ------GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq----lifrg~----------------~~sidcv~~I- 336 (479)
T KOG0299|consen 284 ------GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ----LIFRGG----------------EGSIDCVAFI- 336 (479)
T ss_pred ------CCccceeeechhcccceEEeccccceeEEEeccccce----eeeeCC----------------CCCeeeEEEe-
Confidence 344555677777778888877 599999999954321 244444 4566667765
Q ss_pred CCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEe
Q 047837 381 TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLL 460 (882)
Q Consensus 381 ~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 460 (882)
+...+++|+.||.|.+|++...+.+......|..... .. .
T Consensus 337 -n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~------------------------------------~~---~ 376 (479)
T KOG0299|consen 337 -NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE------------------------------------LD---P 376 (479)
T ss_pred -cccceeeccCCceEEEeeecccCceeEeeccccccCC------------------------------------cc---c
Confidence 6778999999999999999988877655444422110 00 0
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeE---EEeecCCCCEEEEEEccCCCEEEE
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLI---ESIDDHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s 537 (882)
-.+...|++++..|... ++++|+.+|.|++|.+..+...+ ..+. -.+-|++++|+++|+++++
T Consensus 377 ~~~~~Witsla~i~~sd-------------L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPGSD-------------LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred cccccceeeeEecccCc-------------eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEE
Confidence 12335788999988887 99999999999999999874443 3333 5678999999999997766
Q ss_pred Ee
Q 047837 538 CS 539 (882)
Q Consensus 538 ~~ 539 (882)
+.
T Consensus 443 gi 444 (479)
T KOG0299|consen 443 GI 444 (479)
T ss_pred ec
Confidence 53
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.1e-25 Score=210.43 Aligned_cols=283 Identities=18% Similarity=0.254 Sum_probs=213.1
Q ss_pred cCCCCCCcEEEeecCCC--eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 306 LTPTIPNAIACQFSTSE--KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~~--~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
+.+|...+.+++=.|.. .+++|+.||.|++||+....... .+..|.+.|..| ++. .
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi----------------~v~---~ 119 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGI----------------CVT---Q 119 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeE----------------Eec---c
Confidence 34556666688888875 47778889999999998754432 455555555554 443 2
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
..+++++.|.+|+.|-+... .+... ..
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~-p~~ti----------------------------------------------------lg 146 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGP-PLHTI----------------------------------------------------LG 146 (433)
T ss_pred cceEEecCCcceeeeeccCC-cceee----------------------------------------------------ec
Confidence 67899999999999998752 11110 01
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCC-CEEEEEeCCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNG-RKILSCSADR 542 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg 542 (882)
+..+..+.-+.... .++|+|. .|.|||.+.. .++..+.-....|.++.|+|-. ..|+++..|+
T Consensus 147 ~s~~~gIdh~~~~~-------------~FaTcGe--~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 147 KSVYLGIDHHRKNS-------------VFATCGE--QIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred cccccccccccccc-------------cccccCc--eeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 11222222222222 6888876 5999999876 6788888788899999999954 5677788999
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEEC
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s 621 (882)
.|.+||++......++...- .-+.++|+|.+-.++++.+|..++.||++.- ..+.... +|...|.++.||
T Consensus 211 sIvLyD~R~~~Pl~KVi~~m-------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfs 281 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTM-------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFS 281 (433)
T ss_pred ceEEEecccCCccceeeeec-------cccceecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccC
Confidence 99999999877766654433 5678999998888999999999999999864 3555565 899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 622 PSGSYLVCSYSNKSICLYDFISGEMVAKAMG-HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 622 pdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
|.|+-+++|+.|.+|+||.+..+.-.-.+.. --..|.++.||.|.+|+++||.|+.|++|.-.-...
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999999999987754333311 235799999999999999999999999998764433
No 109
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=1.4e-23 Score=211.57 Aligned_cols=214 Identities=18% Similarity=0.243 Sum_probs=159.5
Q ss_pred CCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
...|+.+.|.|-|.+.|++++.||.|++|.+..+........
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t-------------------------------------- 668 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT-------------------------------------- 668 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC--------------------------------------
Confidence 456788889888999999999999999999987654322111
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
| ..++..|...|+.+.|+|-.. +.|++++.|-+|++||+.+. .....+.+|++.|.+++||
T Consensus 669 ---P---e~~lt~h~eKI~slRfHPLAa------------dvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWS 729 (1012)
T KOG1445|consen 669 ---P---EKILTIHGEKITSLRFHPLAA------------DVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWS 729 (1012)
T ss_pred ---c---ceeeecccceEEEEEecchhh------------hHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEEC
Confidence 1 124678999999999999654 38999999999999999987 6777899999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC----cEEEEEccCCc--eE
Q 047837 530 CNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK----KINSFSIAAGK--LI 603 (882)
Q Consensus 530 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~--~~ 603 (882)
|||+.+|+.+.||+|++|+.+..+....-..... ..+--.+.|.-||+++++.+.|. .|.+||..+-. .+
T Consensus 730 pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv----gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 730 PDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV----GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred CCCcceeeeecCceEEEeCCCCCCCccccCCCCc----cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 9999999999999999999987655433221111 13455688999999999888765 68999987533 33
Q ss_pred EEEEeccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEEccCCe
Q 047837 604 RSFKQAKDFGDPMKVTVDPSGS-YLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 604 ~~~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~i~iwd~~~~~ 645 (882)
.+... .-.-.+.--.+.+|.. ++++|-.|..|++|.+-...
T Consensus 806 ~t~~l-Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 806 YTQVL-DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred eeeee-cccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 33321 1111222234556654 56788889999999986544
No 110
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-21 Score=205.49 Aligned_cols=472 Identities=15% Similarity=0.153 Sum_probs=305.0
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCC---EEEEEc--CEEEEEEcCccee
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGE---HLVTVG--GYIYLWNWRSAML 120 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~---~Las~~--~~i~iWd~~~g~~ 120 (882)
.-..-.||+|++++.... +..|.||...||+++..|.+|..+++.+.+.|... ++.+++ |+|++||+..+.+
T Consensus 18 ~~~~avfSnD~k~l~~~~---~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCT---GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred eecccccccCCcEEEEee---CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 344457999999998875 44899999999999999999999999999988544 566666 9999999999999
Q ss_pred eeeeecCCcccceeEEEEcc---CCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeee
Q 047837 121 VMKLKANSSCSAITSACFSS---DAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVIS 197 (882)
Q Consensus 121 ~~~~~~~~~~~~v~~l~fs~---d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 197 (882)
+.++..+ .++..+.+.| +-..++..+.+..++........ ..+...
T Consensus 95 lkt~~~~---~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~------------~~q~~~---------------- 143 (792)
T KOG1963|consen 95 LKTFDNN---LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKL------------SKQSSR---------------- 143 (792)
T ss_pred EEEEecC---CceeEEEechhHhCccceeEeecccceeeeeccccc------------ccceee----------------
Confidence 9999877 5666666643 21222322222222221111100 000000
Q ss_pred cccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecc
Q 047837 198 ATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAG 277 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~ 277 (882)
.+..+..+....+... ......+.+++.|.+.+... +..+.+|...+... .
T Consensus 144 -------------------~~~~t~~~~~~d~~~~--------~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~-~ 194 (792)
T KOG1963|consen 144 -------------------FVLATFDSAKGDFLKE--------HQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTK-H 194 (792)
T ss_pred -------------------eEeeeccccchhhhhh--------hcCCccEEEcCCceEEEEEE-eeeEEEEEecccce-e
Confidence 0000000000000000 00126788888887665554 55677887765431 1
Q ss_pred cccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeC-CceEEEEEcccccccceeeeeecCcce
Q 047837 278 TLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSAC 356 (882)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~ 356 (882)
.. .+... ..|...+.+.+++|.+++++++. ||.|.+|.--..+ .....
T Consensus 195 ~~---------~~~~~-------------~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~---------~~~~t 243 (792)
T KOG1963|consen 195 TS---------SRDIT-------------VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS---------DDSET 243 (792)
T ss_pred ec---------cchhh-------------hhhcccceeEEeccccceEEEeccCCcEEEEeccccc---------ccccc
Confidence 11 11100 01222356889999999777665 9999999754311 11111
Q ss_pred eeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeee
Q 047837 357 IWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNT 436 (882)
Q Consensus 357 v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (882)
...+ .-|...|.+++|+ .+|.+|++|+..|.+.+|.+.+++...
T Consensus 244 ~t~l------HWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~kqf----------------------------- 287 (792)
T KOG1963|consen 244 CTLL------HWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGKKQF----------------------------- 287 (792)
T ss_pred ceEE------EecccccceeEEe-cCCceEeecccceEEEEEeecCCCccc-----------------------------
Confidence 2222 3378899999999 899999999999999999999876321
Q ss_pred eeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe
Q 047837 437 METSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI 516 (882)
Q Consensus 437 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~ 516 (882)
+..-.+.|..+.++|++. +.+....|..|.+....+. .....+
T Consensus 288 -----------------------LPRLgs~I~~i~vS~ds~-------------~~sl~~~DNqI~li~~~dl-~~k~tI 330 (792)
T KOG1963|consen 288 -----------------------LPRLGSPILHIVVSPDSD-------------LYSLVLEDNQIHLIKASDL-EIKSTI 330 (792)
T ss_pred -----------------------ccccCCeeEEEEEcCCCC-------------eEEEEecCceEEEEeccch-hhhhhc
Confidence 223345666777777766 6777777888988887542 111111
Q ss_pred e-----------cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecc-----cCCceEEEEEecCC
Q 047837 517 D-----------DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLA-----SQGTVYDMDIDPTM 580 (882)
Q Consensus 517 ~-----------~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~ 580 (882)
. ...+-.+.++++|.-+.++..+..|.|.+||+.+....+++........ +...++.++.+..|
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 1 1244567889999888899999999999999998777666543222111 12357788888889
Q ss_pred CEEEEEe--------CCC--cEEEEEccCCce---EEEEEeccCCCCcEEEEECC-CCC-EEEEEeCCCcEEEEEccCC-
Q 047837 581 EVVITVG--------QDK--KINSFSIAAGKL---IRSFKQAKDFGDPMKVTVDP-SGS-YLVCSYSNKSICLYDFISG- 644 (882)
Q Consensus 581 ~~l~~~~--------~d~--~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~sp-dg~-~l~~~~~dg~i~iwd~~~~- 644 (882)
.++++.- .|| .+++|-...... +.+.-...|...+...++.+ ... ..++++.||.++||-+...
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDS 490 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccc
Confidence 9998874 233 578897654332 22222246777777666654 333 7899999999999998321
Q ss_pred ---------eEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 645 ---------EMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 645 ---------~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.+...-.-|..++++++|+.||. |++.+.|++|.+||..+
T Consensus 491 n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 491 NIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 22222222789999999999995 55578899999999987
No 111
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.2e-23 Score=220.51 Aligned_cols=236 Identities=14% Similarity=0.235 Sum_probs=173.3
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|.+++|+|.++.+|++|+.||+|++||+.++...... +
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~------------------------------------i 114 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE------------------------------------I 114 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc------------------------------------c
Confidence 3566777777887445889999999999999999764321000 0
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
......+.+|...|.+++|+|++. .++++++.|+.|+|||+.++ .....+. |...|.++
T Consensus 115 -------~~p~~~L~gH~~~V~sVaf~P~g~------------~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~Sl 173 (568)
T PTZ00420 115 -------KDPQCILKGHKKKISIIDWNPMNY------------YIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSL 173 (568)
T ss_pred -------ccceEEeecCCCcEEEEEECCCCC------------eEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEE
Confidence 011223568999999999999876 25689999999999999887 4444554 66789999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCce-----EEEEEecCCCEEEEEeCCC----cEEEEEc
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTV-----YDMDIDPTMEVVITVGQDK----KINSFSI 597 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~l~~~~~d~----~v~iwd~ 597 (882)
+|+|+|.+|++++.|+.|++||++++.....+ .. |.+.+ ....|++++.+|++++.|+ .|++||+
T Consensus 174 swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl-~g-----H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 174 KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF-HI-----HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred EECCCCCEEEEEecCCEEEEEECCCCcEEEEE-ec-----ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 99999999999999999999999976554332 22 22332 3334568999999988774 7999999
Q ss_pred cC-CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE--EEEEccCCCCeEEEEECCCC
Q 047837 598 AA-GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM--VAKAMGHGEVITGVTFLPDC 666 (882)
Q Consensus 598 ~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~d~ 666 (882)
+. ++.+..+....+.+.+......++|.++++|+.|+.|++|++..+.. +..+. +..++.+++|.|+.
T Consensus 248 r~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 248 KNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 95 56666665333334444444566799999999999999999987743 22233 66788999999975
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.8e-24 Score=206.57 Aligned_cols=292 Identities=22% Similarity=0.265 Sum_probs=228.2
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
..|..+|.+++++ ++..+.++++.||+|.-|++.+++...........+..
T Consensus 139 ~~H~~s~~~vals-~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~---------------------------- 189 (479)
T KOG0299|consen 139 GKHQLSVTSVALS-PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS---------------------------- 189 (479)
T ss_pred ccccCcceEEEee-ccccceeecCCCcceeeeehhcCcccccccccchhhhh----------------------------
Confidence 4588889999998 89999999999999999999988754221110000000
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
....+.+. ...|...+.+++.+++++ +||+|+.|..|.||+.++. +.++.+.+|.+.|.++
T Consensus 190 ~~~~~k~~-----r~~h~keil~~avS~Dgk-------------ylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L 250 (479)
T KOG0299|consen 190 HGNPLKES-----RKGHVKEILTLAVSSDGK-------------YLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSL 250 (479)
T ss_pred ccCCCCcc-----cccccceeEEEEEcCCCc-------------EEEecCCCceEEEecCccc-chhhcccccccceeee
Confidence 00000000 037899999999999998 9999999999999999987 7888899999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
+|-.....|++++.|++|++|+++..... ....+|.+.|.++....-++.+-+|+.|+++++|++.... ...+
T Consensus 251 ~fr~gt~~lys~s~Drsvkvw~~~~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlif 323 (479)
T KOG0299|consen 251 AFRKGTSELYSASADRSVKVWSIDQLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIF 323 (479)
T ss_pred eeecCccceeeeecCCceEEEehhHhHHH------HHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeee
Confidence 99988889999999999999999844332 2334566899999988888888888899999999995433 2334
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-C-----------CCCeEEEEECCCCCEEEEEeC
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG-H-----------GEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h-----------~~~v~~l~~s~d~~~l~s~~~ 674 (882)
. ++.+.+-+++|-.+ ..+++|+++|.|.+|++.+.+++..... | ...|++|+..|...++++|+.
T Consensus 324 r--g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 324 R--GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred e--CCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC
Confidence 4 78889999999754 5788999999999999999888876532 2 237899999999999999999
Q ss_pred CCeEEEEeCCCCCC----CcccCCCCCcccEEEecCCCeEEEeccc
Q 047837 675 DGLQRVKEKYGILP----PRNFAQPAALSPIIFCEEEDQKCRMDSV 716 (882)
Q Consensus 675 dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 716 (882)
+|.||+|.+.++.. +..+....-++.+.|+.++.+++..-..
T Consensus 401 ~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 401 SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 99999999987733 3334555667889999999866554333
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=8.2e-24 Score=216.48 Aligned_cols=280 Identities=18% Similarity=0.194 Sum_probs=225.5
Q ss_pred ccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc
Q 047837 305 KLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV 384 (882)
Q Consensus 305 ~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~ 384 (882)
.+.+|..++..+++.+...++.++.||++++|+-..++... ...+.+|.+.|.. .+++.+.++-
T Consensus 9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~---------------~i~y~e~~~~ 72 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIAN---------------SICYAESDKG 72 (745)
T ss_pred EeccCccchheeEecCCeEEeecCCCCceeeeeccCccccc-ceecccCcceeec---------------cceeccccCc
Confidence 34456666778888888889999999999999986654322 1234445444433 0333334566
Q ss_pred EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc
Q 047837 385 SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD 464 (882)
Q Consensus 385 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 464 (882)
.+++|+.|++|.+|......++. .+.+|.
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~---------------------------------------------------~LkgH~ 101 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLY---------------------------------------------------TLKGHK 101 (745)
T ss_pred ceEeecccceEEEEecCCCCchh---------------------------------------------------hhhccc
Confidence 79999999999999988765432 467999
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
..|.++....++ .+++|+.|.++++|... ++...+++|+..|.++++-|++ .+++|+.|.+|
T Consensus 102 snVC~ls~~~~~--------------~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 102 SNVCSLSIGEDG--------------TLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred cceeeeecCCcC--------------ceEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 999999887776 48999999999999875 5666799999999999999987 89999999999
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG 624 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg 624 (882)
++|.-. ...+.+. +|.+.|+.+++-+++ .+++++.||.|++|++ +|+++.++. +|..-++++...+++
T Consensus 164 klWk~~---~~l~tf~-----gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~--ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 164 KLWKGG---TLLKTFS-----GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH--GHTNFVYSISMALSD 231 (745)
T ss_pred eeccCC---chhhhhc-----cchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee--ccceEEEEEEecCCC
Confidence 999864 3333333 345899999999875 5788899999999999 688888887 999999999988999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 625 SYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 625 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
..++++++|++++||+.. ++.+.+.-....|+++.+-++|. +++|+.||.||||...
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 999999999999999976 77777775566999999988886 5668899999999886
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=198.55 Aligned_cols=329 Identities=17% Similarity=0.223 Sum_probs=230.8
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEE
Q 047837 34 QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIY 111 (882)
Q Consensus 34 ~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~ 111 (882)
.++.+.||+ .+|..++.......+++++. |.+.+||.+++|+++.+..||.+.|.++.|++.+.++++++ ++..
T Consensus 140 lvre~~GHk--DGiW~Vaa~~tqpi~gtASA--DhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 140 LVRELEGHK--DGIWHVAADSTQPICGTASA--DHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred ehhhhcccc--cceeeehhhcCCcceeeccc--ccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 456788999 89999999877778888876 88999999999999999999999999999999999999988 8999
Q ss_pred EEEcCcceeeeee---ecCCcccceeEEEEccCCCEEEE--ECCC-cEEEEEcccCccceeccccCccceeecCcccccc
Q 047837 112 LWNWRSAMLVMKL---KANSSCSAITSACFSSDAKFIVT--AGKK-HLKFWTIGSSATARTRLNKGTESLTLHAKPVNLG 185 (882)
Q Consensus 112 iWd~~~g~~~~~~---~~~~~~~~v~~l~fs~d~~~l~~--~~~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 185 (882)
||...-.-.+..- ..|.....+.+- ..+....-+ .+|+ +|++= ...+.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~s--De~~~d~d~~~~sD~~tiRvP---------------l~~ltg-------- 270 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHS--DEHNRDTDSSEKSDGHTIRVP---------------LMRLTG-------- 270 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcc--cccccccccccccCCceeeee---------------eeeeec--------
Confidence 9973211111100 011000011000 000000000 0000 11100 011111
Q ss_pred ccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeE
Q 047837 186 IQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAV 265 (882)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I 265 (882)
|..++.++.|-..|+.+++++.|.+.
T Consensus 271 ------------------------------------------------------H~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 271 ------------------------------------------------------HRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred ------------------------------------------------------cccceEehhhhcCcceeeeeeccccc
Confidence 23334666777778888888888888
Q ss_pred EeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccc
Q 047837 266 HLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~ 345 (882)
.+||+++|+.+..+
T Consensus 297 nlwDVEtge~v~~L------------------------------------------------------------------ 310 (481)
T KOG0300|consen 297 NLWDVETGEVVNIL------------------------------------------------------------------ 310 (481)
T ss_pred eeeeeccCceeccc------------------------------------------------------------------
Confidence 88888887655333
Q ss_pred eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcc
Q 047837 346 RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH 425 (882)
Q Consensus 346 ~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (882)
.||...+ +.++-+ |..+++++.+.|.+.++||++.. +
T Consensus 311 -----tGHd~EL----------------tHcstH-ptQrLVvTsSrDtTFRLWDFRea--I------------------- 347 (481)
T KOG0300|consen 311 -----TGHDSEL----------------THCSTH-PTQRLVVTSSRDTTFRLWDFREA--I------------------- 347 (481)
T ss_pred -----cCcchhc----------------cccccC-CcceEEEEeccCceeEeccchhh--c-------------------
Confidence 3333322 223333 67889999999999999999732 1
Q ss_pred eEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEE
Q 047837 426 LVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYD 505 (882)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd 505 (882)
. ..-++.+|...|+++.|..+.+ +++|+.|.+|++||
T Consensus 348 ---------------------~--------sV~VFQGHtdtVTS~vF~~dd~--------------vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 348 ---------------------Q--------SVAVFQGHTDTVTSVVFNTDDR--------------VVSGSDDRTVKVWD 384 (481)
T ss_pred ---------------------c--------eeeeecccccceeEEEEecCCc--------------eeecCCCceEEEee
Confidence 1 1235789999999999999875 99999999999999
Q ss_pred cCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC--EE
Q 047837 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME--VV 583 (882)
Q Consensus 506 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l 583 (882)
+++...++.++. -..++..++.+..++.|+.--.+..|++||++. ....++.+ ....+|...|.|++|..+.. -|
T Consensus 385 LrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPr-tsRqgHrRMV~c~AW~eehp~cnL 461 (481)
T KOG0300|consen 385 LRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPR-TSRQGHRRMVTCCAWLEEHPACNL 461 (481)
T ss_pred eccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCc-ccccccceeeeeeeccccCccccc
Confidence 998767777776 467889999998888999999999999999983 33444432 23346778999999987543 58
Q ss_pred EEEeCCCcEEEEEccCC
Q 047837 584 ITVGQDKKINSFSIAAG 600 (882)
Q Consensus 584 ~~~~~d~~v~iwd~~~~ 600 (882)
++++.|..+.-|.+...
T Consensus 462 ftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 462 FTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccceeeeeEeccc
Confidence 89999999999998643
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.4e-24 Score=206.24 Aligned_cols=229 Identities=18% Similarity=0.256 Sum_probs=199.5
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
..++++...+... .+++|+.|..+.++|...+ +.+..++||...|+.+.|+|+...+++++.|..|
T Consensus 220 pgi~ald~~~s~~-------------~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDIIPSSS-------------KILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred CCeeEEeecCCCC-------------cceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceE
Confidence 4566676666644 7999999999999999887 8899999999999999999999999999999999
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG 624 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg 624 (882)
++|...... ..... ..|..+|+.+..+|.|+||++++.|++..+.|++++..+.........-.+++.+|+|||
T Consensus 286 ~vws~~~~s-~~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 286 RVWSVPLSS-EPTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred Eeecccccc-Ccccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 999987544 22222 344589999999999999999999999999999999998887633344568999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCC--CcccEE
Q 047837 625 SYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPA--ALSPII 702 (882)
Q Consensus 625 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~ 702 (882)
.++.+|..|+.|+|||+.++..+..|.+|+++|..++|+.+|-+|+++..|+.|++||++..+...++..+. ++..+.
T Consensus 360 Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999888777775544 477888
Q ss_pred EecCCCeEEEe
Q 047837 703 FCEEEDQKCRM 713 (882)
Q Consensus 703 ~s~~~~~~~~~ 713 (882)
|..++..+...
T Consensus 440 fD~SGt~L~~~ 450 (506)
T KOG0289|consen 440 FDQSGTYLGIA 450 (506)
T ss_pred EcCCCCeEEee
Confidence 88888766554
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=6.8e-24 Score=229.33 Aligned_cols=304 Identities=17% Similarity=0.232 Sum_probs=233.0
Q ss_pred CCCcceeeeccCCCcEEEEee--CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 370 DPSVSCVARGCTGGVSFSTCS--ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
...|.++..+ +++..++||+ .||.+++|+...--...+ ....
T Consensus 13 ~~~IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~--~~~~--------------------------------- 56 (942)
T KOG0973|consen 13 EKSIFSIDVH-PDGVKFATGGQVLDGGIVIWSQDPVLDEKE--EKNE--------------------------------- 56 (942)
T ss_pred CeeEEEEEec-CCceeEecCCccccccceeeccccccchhh--hhhc---------------------------------
Confidence 3456777777 8999999999 999999999763210000 0000
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC-----------------Cc
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR-----------------NF 510 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~-----------------~~ 510 (882)
.-......+..|.+.|.|+.|+++++ +||+|++|+.|.||+... .+
T Consensus 57 ----~l~k~l~~m~~h~~sv~CVR~S~dG~-------------~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~w 119 (942)
T KOG0973|consen 57 ----NLPKHLCTMDDHDGSVNCVRFSPDGS-------------YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESW 119 (942)
T ss_pred ----ccchhheeeccccCceeEEEECCCCC-------------eEeeccCcceEEEeeecccCCccccccccccccccee
Confidence 01122345678999999999999999 999999999999999772 23
Q ss_pred eeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC
Q 047837 511 DLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK 590 (882)
Q Consensus 511 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 590 (882)
+....+.+|...|.+++|+|++.+|++++.|++|.+|+..+. ...+....| .+.|-.+.|.|-|++||+-+.|+
T Consensus 120 k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 120 KVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGH-----QSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred eEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecc-----cccccceEECCccCeeeeecCCc
Confidence 467788999999999999999999999999999999999987 444444444 47999999999999999999999
Q ss_pred cEEEEEccCCceEEEEEec----cCCCCcEEEEECCCCCEEEEEeC----CCcEEEEEccCCeEEEEEccCCCCeEEEEE
Q 047837 591 KINSFSIAAGKLIRSFKQA----KDFGDPMKVTVDPSGSYLVCSYS----NKSICLYDFISGEMVAKAMGHGEVITGVTF 662 (882)
Q Consensus 591 ~v~iwd~~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l~~~~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 662 (882)
+|++|++.+....+.+..+ ........+.|||||++|++... -.++.|.+..+.+.-..+-||..++..+.|
T Consensus 194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 9999998887777766521 22345788999999999998643 337899998888888899999999999999
Q ss_pred CCC-----CC------------EEEEEeCCCeEEEEeCCCCCCCccc--CCCCCcccEEEecCCCeEEEeccccc--ccc
Q 047837 663 LPD-----CK------------HIVSVGGDGLQRVKEKYGILPPRNF--AQPAALSPIIFCEEEDQKCRMDSVNM--SFK 721 (882)
Q Consensus 663 s~d-----~~------------~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~ 721 (882)
+|- .+ .+|+|+.|++|.||.....+++... .....+..+.+++++..+.....+.. .+.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 871 11 6788999999999999777666443 33466778999998885544443333 344
Q ss_pred cCcCcCCCccc
Q 047837 722 KDLDQIGPHLH 732 (882)
Q Consensus 722 ~~~~~~~~~~~ 732 (882)
-...++|..+.
T Consensus 354 Fee~ElG~~ls 364 (942)
T KOG0973|consen 354 FEEKELGVALS 364 (942)
T ss_pred cchHHhCcccC
Confidence 44445555443
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=3e-24 Score=210.73 Aligned_cols=287 Identities=16% Similarity=0.210 Sum_probs=229.2
Q ss_pred CCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 308 PTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
.|..-|.++..+...+.+..++.|.|+|||+..... ..+|..+..+ ...+-|..+... +||+.|+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~----------k~PvsqLdcl----~rdnyiRSckL~-pdgrtLi 481 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGN----------KSPVSQLDCL----NRDNYIRSCKLL-PDGRTLI 481 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCC----------CCcccccccc----CcccceeeeEec-CCCceEE
Confidence 455556678888888999999999999999965422 2222222211 124556777777 8999999
Q ss_pred EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 388 TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 388 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
+|+.-.++.|||+.......+... ....-.+
T Consensus 482 vGGeastlsiWDLAapTprikael-------------------------------------------------tssapaC 512 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAEL-------------------------------------------------TSSAPAC 512 (705)
T ss_pred eccccceeeeeeccCCCcchhhhc-------------------------------------------------CCcchhh
Confidence 999999999999987654322111 1111233
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVR 547 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vw 547 (882)
.+++.+|+.+ +.+++..||.|.|||+.+. .+++.+++|++.+.||.+++||..|-+|+-|.+|+.|
T Consensus 513 yALa~spDak-------------vcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 513 YALAISPDAK-------------VCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW 578 (705)
T ss_pred hhhhcCCccc-------------eeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence 4455566655 7889999999999999876 8999999999999999999999999999999999999
Q ss_pred eCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEE
Q 047837 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 548 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 627 (882)
|++++....+... ...|.++-.+|++.+|++|-+++.+.+..... .....+. -|...|.++.|++-|+++
T Consensus 579 DlregrqlqqhdF-------~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlh--lheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 579 DLREGRQLQQHDF-------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLH--LHESCVLSLKFAYCGKWF 648 (705)
T ss_pred hhhhhhhhhhhhh-------hhhheecccCCCccceeeecccCcEEEEecCC-ccceeec--ccccEEEEEEecccCcee
Confidence 9997765544322 24799999999999999999999999988763 3333443 789999999999999999
Q ss_pred EEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 628 VCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
++.+.|+.+..|.+.-|..+...+ ..+.|+++..|.|.++++||+.|....||.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999998887776 6789999999999999999999998888875
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.8e-23 Score=191.84 Aligned_cols=308 Identities=19% Similarity=0.290 Sum_probs=226.2
Q ss_pred CCCCCcEEEeecCC-Ce-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 308 PTIPNAIACQFSTS-EK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 308 ~~~~~~~~~~~s~~-~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
+|.+.+.++...+- |+ +++|+.||.|.+||++....-... .+.....++ .-.+...+|.-.|..+.|-|-|...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-~li~k~~c~---v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-GLIAKHKCI---VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-cceeheeee---ccccCCccceeeeeeeEEeeecCce
Confidence 45555666766654 45 666777999999999764321111 111111111 1123356799999999999889999
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
+.+++.|.++++||..+-+....+. ..+
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~----------------------------------------------------me~ 144 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK----------------------------------------------------MEG 144 (397)
T ss_pred eecccccceEEEeecccceeeEEee----------------------------------------------------cCc
Confidence 9999999999999999876543322 233
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCE-EEEEeCCCeE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRK-ILSCSADRSL 544 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i 544 (882)
.|..-+++|-.. .+.++|+|..+-.|++-|+.++ ...+++.+|...|.++.|+|...+ |++|+.||.|
T Consensus 145 ~VYshamSp~a~----------sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 145 KVYSHAMSPMAM----------SHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred eeehhhcChhhh----------cceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 444445555332 1237999999999999999998 889999999999999999997665 6799999999
Q ss_pred EEEeCccCccceeeeccce---------ecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEE-EEEeccCCCC
Q 047837 545 VVRDVVETNSAYKISRRHQ---------QLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIR-SFKQAKDFGD 614 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~ 614 (882)
++||++....+......|. ..+|.+.+..++|+.++.++++++.|..+++|+..+|+... .+-...|...
T Consensus 214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~ 293 (397)
T KOG4283|consen 214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT 293 (397)
T ss_pred EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc
Confidence 9999997644444443333 45678899999999999999999999999999999876422 1111111111
Q ss_pred ---cEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 615 ---PMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 615 ---v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
-.-+. +.+...++---.++.+.++.+-+|+.+..+..|...|.+.+|-|+-+.+.++..|+.|..|-.
T Consensus 294 ~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 294 TSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 11122 333334444445689999999999999999999999999999999999999999999999976
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=192.57 Aligned_cols=268 Identities=16% Similarity=0.194 Sum_probs=212.0
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCC-ceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQ-SELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
.+..|.+++|+|....+++.++.||+||+|+++.. ....
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~---------------------------------------- 65 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP---------------------------------------- 65 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc----------------------------------------
Confidence 46789999999767778889999999999999863 2211
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
.....|.++|.+++|+.++. .+++|+.|+.+++||+.++ .+..+..|..+|..+.
T Consensus 66 ----------ka~~~~~~PvL~v~Wsddgs-------------kVf~g~~Dk~~k~wDL~S~--Q~~~v~~Hd~pvkt~~ 120 (347)
T KOG0647|consen 66 ----------KAQQSHDGPVLDVCWSDDGS-------------KVFSGGCDKQAKLWDLASG--QVSQVAAHDAPVKTCH 120 (347)
T ss_pred ----------hhhhccCCCeEEEEEccCCc-------------eEEeeccCCceEEEEccCC--CeeeeeecccceeEEE
Confidence 12457899999999999998 8999999999999999987 4556778999999999
Q ss_pred EccCCC--EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEE
Q 047837 528 FTCNGR--KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRS 605 (882)
Q Consensus 528 ~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 605 (882)
|-+... .|++|+.|++|++||.+.......+... .+++++..- ..+++++..++.|.+|+++.+.....
T Consensus 121 wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-------eRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k 191 (347)
T KOG0647|consen 121 WVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-------ERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFK 191 (347)
T ss_pred EecCCCcceeEecccccceeecccCCCCeeeeeecc-------ceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhh
Confidence 987555 8999999999999999976665554332 356665543 45788888999999999987654333
Q ss_pred EEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC--eEEEEEccCCC---------CeEEEEECCCCCEEEEEeC
Q 047837 606 FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG--EMVAKAMGHGE---------VITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 606 ~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~l~~s~d~~~l~s~~~ 674 (882)
.....-.-.+.+++..+|....|.|+-+|.+.|..+..+ +.-..++.|.. .|.+++|+|.-..|+|+|.
T Consensus 192 ~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs 271 (347)
T KOG0647|consen 192 RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS 271 (347)
T ss_pred hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC
Confidence 222234556889999998888899999999999999876 33445666652 5788999999999999999
Q ss_pred CCeEEEEeCCCCCCCcc-cCCCCCcccEEEecCCCeE
Q 047837 675 DGLQRVKEKYGILPPRN-FAQPAALSPIIFCEEEDQK 710 (882)
Q Consensus 675 dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~s~~~~~~ 710 (882)
||+..+||-.....+.+ ..++.++..-.|..++...
T Consensus 272 DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 272 DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred CceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence 99999999987766666 4566777777787777643
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.3e-25 Score=206.11 Aligned_cols=284 Identities=14% Similarity=0.236 Sum_probs=228.1
Q ss_pred eeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeee
Q 047837 356 CIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERN 435 (882)
Q Consensus 356 ~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (882)
.++.-.|...+.+|..+|.|++-+|..-..+++|+.||.|++||+....+..
T Consensus 52 R~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---------------------------- 103 (433)
T KOG0268|consen 52 RVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---------------------------- 103 (433)
T ss_pred HHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh----------------------------
Confidence 3445556666788999999999985555789999999999999998766543
Q ss_pred eeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE
Q 047837 436 TMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES 515 (882)
Q Consensus 436 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~ 515 (882)
.+.+|.+.|..+++... .+++++.|.+|+.|.+.. .+.++
T Consensus 104 -----------------------~f~AH~G~V~Gi~v~~~---------------~~~tvgdDKtvK~wk~~~--~p~~t 143 (433)
T KOG0268|consen 104 -----------------------TFKAHEGLVRGICVTQT---------------SFFTVGDDKTVKQWKIDG--PPLHT 143 (433)
T ss_pred -----------------------eeecccCceeeEEeccc---------------ceEEecCCcceeeeeccC--Cccee
Confidence 36689999999999872 589999999999999875 35555
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEE
Q 047837 516 IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINS 594 (882)
Q Consensus 516 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i 594 (882)
+.+ ...+..|.-+..+..++++++ .|.|||.+.......+.... +.|.++.|+|-.. .|+++..|+.|.+
T Consensus 144 ilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~------Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 144 ILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA------DSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred eec-cccccccccccccccccccCc--eeeecccccCCccceeecCC------CceeEEecCCCcchheeeeccCCceEE
Confidence 543 455677777777788888886 49999998777666665555 4899999999765 6777779999999
Q ss_pred EEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC-eEEEEEccCCCCeEEEEECCCCCEEEEEe
Q 047837 595 FSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG-EMVAKAMGHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 595 wd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
||++++.+++.+. -...-+.|+|+|.+--+++|++|..++.||++.- .++....+|.+.|.++.|||.|+-+++||
T Consensus 215 yD~R~~~Pl~KVi---~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 215 YDLRQASPLKKVI---LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EecccCCccceee---eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 9999999988875 3456678999998888899999999999999864 67888899999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcccCCC----------CCcccEEEecCCCeEEEecccccc
Q 047837 674 GDGLQRVKEKYGILPPRNFAQP----------AALSPIIFCEEEDQKCRMDSVNMS 719 (882)
Q Consensus 674 ~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~~~~~~~~~~ 719 (882)
.|.+|+||.+..+.....+-.. ..-...+||++++..+++|....+
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 9999999999887665554322 223467788888888888766544
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-22 Score=175.68 Aligned_cols=310 Identities=18% Similarity=0.257 Sum_probs=216.5
Q ss_pred cceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCccccc
Q 047837 131 SAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQE 209 (882)
Q Consensus 131 ~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (882)
..|.+++|.|.|.+.++++. ++++|.-...-.. ....|+.+....
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~----------~r~~hea~~~pp------------------------ 78 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID----------LRHAHEAAKQPP------------------------ 78 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccC----------cccccccccCCC------------------------
Confidence 78999999999999999987 7788765432111 111232222100
Q ss_pred ccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCC
Q 047837 210 QAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNG 289 (882)
Q Consensus 210 ~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 289 (882)
..... ....|...+.|.+|+|+|++|++|+.|.+|++...+...+.. .|
T Consensus 79 -------~v~~k--------------r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~----------~g 127 (350)
T KOG0641|consen 79 -------SVLCK--------------RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA----------TG 127 (350)
T ss_pred -------eEEee--------------eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc----------cC
Confidence 00000 112234556899999999999999999999987665432211 12
Q ss_pred CCccccchhhhccccccCCCCCCcEEEeecCC----CeEEEEeC--CceEEEEEcccccccceeeeeecCcceeeeeccc
Q 047837 290 ENDTVSTAKATELYFKLTPTIPNAIACQFSTS----EKLVVVYG--DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNL 363 (882)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~ll~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 363 (882)
|. ..+.-+.+.+..++|..+ +.+++.++ |..|++=|-..++ ....+.||++-|..+-.
T Consensus 128 ~d------------le~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---~~~a~sghtghilalys- 191 (350)
T KOG0641|consen 128 HD------------LEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---GFHALSGHTGHILALYS- 191 (350)
T ss_pred cc------------eeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC---cceeecCCcccEEEEEE-
Confidence 21 223345566678888755 35666544 6677777766653 34467788877766642
Q ss_pred CCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccc
Q 047837 364 GCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVST 443 (882)
Q Consensus 364 ~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (882)
-++-.+++|+.|.+|++||++-...+.......
T Consensus 192 -----------------wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~------------------------------ 224 (350)
T KOG0641|consen 192 -----------------WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF------------------------------ 224 (350)
T ss_pred -----------------ecCcEEEccCCCceEEEEeeeccceeeeccCcc------------------------------
Confidence 368899999999999999998655443211000
Q ss_pred cCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCE
Q 047837 444 QGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAV 523 (882)
Q Consensus 444 ~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v 523 (882)
. ++ ......|.+++..|.++ +|++|-.|....+||++.+ ..++.+..|...|
T Consensus 225 --------~-~~-----glessavaav~vdpsgr-------------ll~sg~~dssc~lydirg~-r~iq~f~phsadi 276 (350)
T KOG0641|consen 225 --------H-DG-----GLESSAVAAVAVDPSGR-------------LLASGHADSSCMLYDIRGG-RMIQRFHPHSADI 276 (350)
T ss_pred --------c-CC-----CcccceeEEEEECCCcc-------------eeeeccCCCceEEEEeeCC-ceeeeeCCCccce
Confidence 0 00 12345688888889888 9999999999999999877 8899999999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc
Q 047837 524 TAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 524 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 598 (882)
.++.|+|...++++++.|..|++-|++.. ...++ .......|.+.+..+.|+|..--+++.+.|+++.+|-+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgd-la~el-~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHEL-PIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccc-hhhcC-ceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999999732 11111 111122345788889999999999999999999999764
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=205.27 Aligned_cols=291 Identities=17% Similarity=0.254 Sum_probs=223.8
Q ss_pred CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--CcEEEEEcccCccceeccccCccceeecCcccccc
Q 047837 108 GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLG 185 (882)
Q Consensus 108 ~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 185 (882)
..+.+||+.+|....++++... ..-.++..- .+.+++++.. ..+.+|.+...... +...+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~-a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~-------------~q~~v--- 79 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYL-AQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQV-------------VQYIV--- 79 (476)
T ss_pred cceeEEecCCCceeEEecCccc-ccchhhhhh-chhheeeecccCccccccccCchhhh-------------hhhcc---
Confidence 7899999999999988886621 111122111 2356666654 47999988644330 11111
Q ss_pred ccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeE
Q 047837 186 IQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAV 265 (882)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I 265 (882)
-...+.+++-+|+|.+|+.|+..|.|
T Consensus 80 ------------------------------------------------------~Pg~v~al~s~n~G~~l~ag~i~g~l 105 (476)
T KOG0646|consen 80 ------------------------------------------------------LPGPVHALASSNLGYFLLAGTISGNL 105 (476)
T ss_pred ------------------------------------------------------cccceeeeecCCCceEEEeecccCcE
Confidence 12334788889999999888888999
Q ss_pred EeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccc
Q 047837 266 HLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~ 345 (882)
.+|.+.+|..+..+
T Consensus 106 YlWelssG~LL~v~------------------------------------------------------------------ 119 (476)
T KOG0646|consen 106 YLWELSSGILLNVL------------------------------------------------------------------ 119 (476)
T ss_pred EEEEeccccHHHHH------------------------------------------------------------------
Confidence 99998887665332
Q ss_pred eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcc
Q 047837 346 RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH 425 (882)
Q Consensus 346 ~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (882)
.+|-..|+|+.|+ .|+.+|+||+.||.|.+|.+.
T Consensus 120 ---------------------~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~------------------------ 153 (476)
T KOG0646|consen 120 ---------------------SAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLT------------------------ 153 (476)
T ss_pred ---------------------HhhccceeEEEEe-CCCcEEEecCCCccEEEEEEE------------------------
Confidence 2367788888888 899999999999999999975
Q ss_pred eEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEE
Q 047837 426 LVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYD 505 (882)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd 505 (882)
.++.+..++
T Consensus 154 -----------------------------------------------------------------~lv~a~~~~------ 162 (476)
T KOG0646|consen 154 -----------------------------------------------------------------DLVSADNDH------ 162 (476)
T ss_pred -----------------------------------------------------------------eecccccCC------
Confidence 355555554
Q ss_pred cCCCceeEEEeecCCCCEEEEEEccC--CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEE
Q 047837 506 VKRNFDLIESIDDHSAAVTAVKFTCN--GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVV 583 (882)
Q Consensus 506 ~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 583 (882)
+ ..+.+.+..|+-+|+++...+. ..+|++++.|.++++||+..+.....+... ..+.+++.+|.++.+
T Consensus 163 --~-~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-------~si~av~lDpae~~~ 232 (476)
T KOG0646|consen 163 --S-VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-------SSIKAVALDPAERVV 232 (476)
T ss_pred --C-ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-------CcceeEEEcccccEE
Confidence 2 2677888899999999988764 468999999999999999987666555443 379999999999999
Q ss_pred EEEeCCCcEEEEEccCC----------------ceEEEEEeccCCC--CcEEEEECCCCCEEEEEeCCCcEEEEEccCCe
Q 047837 584 ITVGQDKKINSFSIAAG----------------KLIRSFKQAKDFG--DPMKVTVDPSGSYLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 584 ~~~~~d~~v~iwd~~~~----------------~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~ 645 (882)
++|+.+|.|.+.++... ..+..+. +|.+ .|++++++-||.+|++|+.||.++|||+.+.+
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 99999999998887532 2344455 6666 99999999999999999999999999999999
Q ss_pred EEEEEccCCCCeEEEEECCC
Q 047837 646 MVAKAMGHGEVITGVTFLPD 665 (882)
Q Consensus 646 ~~~~~~~h~~~v~~l~~s~d 665 (882)
+++++....++|+.+.+.|=
T Consensus 311 ~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhhccccceeEeecc
Confidence 99988767789999999664
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.5e-23 Score=203.41 Aligned_cols=260 Identities=20% Similarity=0.255 Sum_probs=205.9
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|.+.|+.+...|.+..++++.+..+.+.|||............
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~------------------------------------- 165 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG------------------------------------- 165 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-------------------------------------
Confidence 6667777777778899999999999999999986543321100
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc------eeEEEeecCCCC
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF------DLIESIDDHSAA 522 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~------~~~~~~~~h~~~ 522 (882)
.+.|+ +.+.+|.+.-..++|++... -.+++++.|+.|++||+.... .+...+.+|...
T Consensus 166 -~~~Pd---l~L~gH~~eg~glsWn~~~~------------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~ 229 (422)
T KOG0264|consen 166 -ECRPD---LRLKGHEKEGYGLSWNRQQE------------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV 229 (422)
T ss_pred -cCCCc---eEEEeecccccccccccccc------------eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc
Confidence 11121 34668888777889988765 279999999999999997632 245678899999
Q ss_pred EEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC-CCEEEEEeCCCcEEEEEccCC
Q 047837 523 VTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT-MEVVITVGQDKKINSFSIAAG 600 (882)
Q Consensus 523 v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~ 600 (882)
|..++|++ +...+++++.|+.+.|||+++. .....+...+|.+.+.|++|+|- +..||+|+.|++|++||+++-
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL 305 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCC----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence 99999999 6678889999999999999962 12223344567789999999995 457889999999999999974
Q ss_pred -ceEEEEEeccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEEccC-C-------------eEEEEEccCCCCeEEEEECC
Q 047837 601 -KLIRSFKQAKDFGDPMKVTVDPS-GSYLVCSYSNKSICLYDFIS-G-------------EMVAKAMGHGEVITGVTFLP 664 (882)
Q Consensus 601 -~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~dg~i~iwd~~~-~-------------~~~~~~~~h~~~v~~l~~s~ 664 (882)
+.+.++. +|...|.++.|||. ...||+++.|+.+.|||+.. | +++..-.||...|..+.|+|
T Consensus 306 ~~~lh~~e--~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 306 NKPLHTFE--GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred ccCceecc--CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC
Confidence 4667777 99999999999995 56789999999999999953 1 34566678999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCC
Q 047837 665 DCK-HIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 665 d~~-~l~s~~~dg~i~vwd~~~~~ 687 (882)
... .|+|++.|+.+.||+.....
T Consensus 384 ~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 384 NEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred CCCeEEEEecCCceEEEeeccccc
Confidence 876 56788899999999987543
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.1e-22 Score=188.83 Aligned_cols=269 Identities=17% Similarity=0.220 Sum_probs=214.0
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
....|+.+.|+ +.+..|+.++.||++++|++.......
T Consensus 12 P~d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~----------------------------------------- 49 (323)
T KOG1036|consen 12 PEDGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKL----------------------------------------- 49 (323)
T ss_pred ChhceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhh-----------------------------------------
Confidence 35678888888 677777778899999999998764322
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
.-.|..++++.+|.++.. +++|+.||.|+.+|+.++ ....+..|..+|.+|.+
T Consensus 50 -----------~~~~~~plL~c~F~d~~~--------------~~~G~~dg~vr~~Dln~~--~~~~igth~~~i~ci~~ 102 (323)
T KOG1036|consen 50 -----------KFKHGAPLLDCAFADEST--------------IVTGGLDGQVRRYDLNTG--NEDQIGTHDEGIRCIEY 102 (323)
T ss_pred -----------heecCCceeeeeccCCce--------------EEEeccCceEEEEEecCC--cceeeccCCCceEEEEe
Confidence 225788999999998764 999999999999999875 34556779999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ 608 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 608 (882)
++-...+++|+.|++|++||.+........ .....|.++... +..|++|+.|..|.+||+++.....+...
T Consensus 103 ~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-------d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 103 SYEVGCVISGSWDKTIKFWDPRNKVVVGTF-------DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred eccCCeEEEcccCccEEEEecccccccccc-------ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhcc
Confidence 998889999999999999999852222111 112478877765 67899999999999999998766554443
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC----eEEEEEccCCC---------CeEEEEECCCCCEEEEEeCC
Q 047837 609 AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG----EMVAKAMGHGE---------VITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 609 ~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~---------~v~~l~~s~d~~~l~s~~~d 675 (882)
..-.-.+.++++-|++.=.|+++-||.|.+=.++.. +.-..|+.|.. +|.+|+|+|--+.|+||+.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 345567899999998888999999999988666654 34455666643 79999999999999999999
Q ss_pred CeEEEEeCCCCCCCcccCCC-CCcccEEEecCCCeEEEecc
Q 047837 676 GLQRVKEKYGILPPRNFAQP-AALSPIIFCEEEDQKCRMDS 715 (882)
Q Consensus 676 g~i~vwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~ 715 (882)
|.|.+||+...+.+..+... ..+..+.|+.++..+.....
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999998888887655 55888999988876665543
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.5e-23 Score=205.89 Aligned_cols=281 Identities=21% Similarity=0.355 Sum_probs=219.9
Q ss_pred cccceeEEEECCCCCEEEEEc-CEEEEEEcCcc---eeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccC
Q 047837 87 HLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSA---MLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSS 161 (882)
Q Consensus 87 h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g---~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~ 161 (882)
|..-|.++++|...+++.+|+ |.|+|||+... ..+..+..-....-|.++...|||+.|+++|. -++.|||+...
T Consensus 418 HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred cCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 888899999999999999999 99999998643 34555554433478999999999999999998 68999999866
Q ss_pred ccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeec
Q 047837 162 ATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDL 241 (882)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~ 241 (882)
...... .+. .. .
T Consensus 498 Tprika------elt---------------------------------------------ss-----------------a 509 (705)
T KOG0639|consen 498 TPRIKA------ELT---------------------------------------------SS-----------------A 509 (705)
T ss_pred Ccchhh------hcC---------------------------------------------Cc-----------------c
Confidence 541000 000 00 0
Q ss_pred eeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 242 KVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 242 ~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
..+.+++.+||.+..++++.||.|+|||+.+...++.
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq------------------------------------------- 546 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ------------------------------------------- 546 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec-------------------------------------------
Confidence 1126788899999999999999999999875332222
Q ss_pred CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC
Q 047837 322 EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 322 ~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~ 401 (882)
+ .+|...+.|+.++ .+|..|-||+.|.+||-||++
T Consensus 547 ----------------------------f----------------qGhtDGascIdis-~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 547 ----------------------------F----------------QGHTDGASCIDIS-KDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred ----------------------------c----------------cCCCCCceeEEec-CCCceeecCCCccceeehhhh
Confidence 2 3456677777777 899999999999999999999
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcc
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDV 481 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 481 (882)
+++.+.+. .....|.++.++|.+.
T Consensus 582 egrqlqqh----------------------------------------------------dF~SQIfSLg~cP~~d---- 605 (705)
T KOG0639|consen 582 EGRQLQQH----------------------------------------------------DFSSQIFSLGYCPTGD---- 605 (705)
T ss_pred hhhhhhhh----------------------------------------------------hhhhhheecccCCCcc----
Confidence 88765432 2345677888888887
Q ss_pred ceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeecc
Q 047837 482 LEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRR 561 (882)
Q Consensus 482 ~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 561 (882)
+++.|-.++.+.|...... ....+.-|..-|.++.|.+.|+++++.+.|..+-.|...-+..+.+...
T Consensus 606 ---------WlavGMens~vevlh~skp--~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE- 673 (705)
T KOG0639|consen 606 ---------WLAVGMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE- 673 (705)
T ss_pred ---------ceeeecccCcEEEEecCCc--cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-
Confidence 9999999999999887643 3445666899999999999999999999999999999876655444322
Q ss_pred ceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 047837 562 HQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSI 597 (882)
Q Consensus 562 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~ 597 (882)
...|.++.++.|.+++++|+.|+...+|.+
T Consensus 674 ------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 ------SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 358999999999999999999999888875
No 126
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=204.73 Aligned_cols=271 Identities=20% Similarity=0.338 Sum_probs=200.7
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS 82 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~ 82 (882)
++.++|.|||+ .++..+|+.+.|||...|.++..+.+|+ ..|.|+|+|.||+.+|+|+. |..|.||+.+ .-.
T Consensus 15 i~d~afkPDGs-qL~lAAg~rlliyD~ndG~llqtLKgHK--DtVycVAys~dGkrFASG~a--DK~VI~W~~k---lEG 86 (1081)
T KOG1538|consen 15 INDIAFKPDGT-QLILAAGSRLLVYDTSDGTLLQPLKGHK--DTVYCVAYAKDGKRFASGSA--DKSVIIWTSK---LEG 86 (1081)
T ss_pred hheeEECCCCc-eEEEecCCEEEEEeCCCccccccccccc--ceEEEEEEccCCceeccCCC--ceeEEEeccc---ccc
Confidence 35689999998 8888999999999999999999999999 89999999999999999965 8899999864 223
Q ss_pred Eee-ccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC-CCcEEEEEcc
Q 047837 83 ELK-GHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIG 159 (882)
Q Consensus 83 ~l~-~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-~~~i~iwd~~ 159 (882)
.|+ .|.+.|.||.|+|-.+.|++++ ...-+|..+...... .+ ...++.+++|..||++|+.+- +|+|.+-+-.
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~k---ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HK---SSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hh---hheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 344 3999999999999999999999 999999876544332 22 227899999999999999986 4888877544
Q ss_pred cCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
..+. .++.+. .+.
T Consensus 163 gEek--~~I~Rp----gg~------------------------------------------------------------- 175 (1081)
T KOG1538|consen 163 GEEK--VKIERP----GGS------------------------------------------------------------- 175 (1081)
T ss_pred CCcc--eEEeCC----CCC-------------------------------------------------------------
Confidence 3332 111000 000
Q ss_pred eceeeeeEEEecCC-----CEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcE
Q 047837 240 DLKVKNGFALSASS-----KLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAI 314 (882)
Q Consensus 240 ~~~~~~~~~~s~d~-----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (882)
...+.+++|+|.. ..+++.....++.+|.+. |+.+..-. ...-+..
T Consensus 176 -Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r---------------------------~L~FdP~ 226 (1081)
T KOG1538|consen 176 -NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR---------------------------ALNFDPC 226 (1081)
T ss_pred -CCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc---------------------------cCCCCch
Confidence 1223678888853 478888888999988876 33332110 0111234
Q ss_pred EEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCC
Q 047837 315 ACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADG 393 (882)
Q Consensus 315 ~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg 393 (882)
|+.|.++|. +++|+.|+.+.+|.-+.- ++-++......||.+.. . |+++.++.|+.||
T Consensus 227 CisYf~NGEy~LiGGsdk~L~~fTR~Gv----rLGTvg~~D~WIWtV~~----------------~-PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSDKQLSLFTRDGV----RLGTVGEQDSWIWTVQA----------------K-PNSQYVVVGCQDG 285 (1081)
T ss_pred hheeccCCcEEEEccCCCceEEEeecCe----EEeeccccceeEEEEEE----------------c-cCCceEEEEEccC
Confidence 788999987 567788999999976532 22233334556666665 2 8999999999999
Q ss_pred cEEEEecCC
Q 047837 394 TIRLWDLAL 402 (882)
Q Consensus 394 ~i~vwd~~~ 402 (882)
+|..|++..
T Consensus 286 TiACyNl~f 294 (1081)
T KOG1538|consen 286 TIACYNLIF 294 (1081)
T ss_pred eeehhhhHH
Confidence 999998764
No 127
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.5e-21 Score=201.24 Aligned_cols=514 Identities=13% Similarity=0.112 Sum_probs=321.1
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCC---EEEEeecCCCCeEEEEECCCceee
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGR---YVAAGESGPQPAVLVWDCANLAFI 81 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~---~la~g~~~~d~~I~vwd~~t~~~~ 81 (882)
.-+|++|+. .++.+.++.|.||...++.+++.+.+|. .+++.+.+.|... ++.+++. +|.|++||...+.++
T Consensus 21 ~avfSnD~k-~l~~~~~~~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl--~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 21 PAVFSNDAK-FLFLCTGNFVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSL--DGTIRVWDWSDGELL 95 (792)
T ss_pred ccccccCCc-EEEEeeCCEEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEec--CccEEEecCCCcEEE
Confidence 357889965 8888889999999999999999999999 8999999987554 5667765 899999999999999
Q ss_pred EEeeccccceeEEEECC---CCCEEEEEc-CEEEEEE---cCcceeeeee-----ecCC-----cccceeEEEEccCCCE
Q 047837 82 SELKGHLYGVECIAFSP---DGEHLVTVG-GYIYLWN---WRSAMLVMKL-----KANS-----SCSAITSACFSSDAKF 144 (882)
Q Consensus 82 ~~l~~h~~~V~~lafsp---dg~~Las~~-~~i~iWd---~~~g~~~~~~-----~~~~-----~~~~v~~l~fs~d~~~ 144 (882)
+++..+ .+|..+.+.| +-..++..+ ...++.. .+..+....+ .... ....-..+.+++.|.+
T Consensus 96 kt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 998743 3344444433 211233222 2222222 1111111111 1110 0012467888888888
Q ss_pred EEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCc
Q 047837 145 IVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAG 224 (882)
Q Consensus 145 l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 224 (882)
.+.+....+.+|....+.. ... ....
T Consensus 175 ~~i~~~~~~~~~~v~~~~~--~~~--~~~~-------------------------------------------------- 200 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTK--HTS--SRDI-------------------------------------------------- 200 (792)
T ss_pred EEEEEeeeEEEEEecccce--eec--cchh--------------------------------------------------
Confidence 8888888888998876431 000 0000
Q ss_pred eEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhcccc
Q 047837 225 ILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYF 304 (882)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (882)
...|...+++.+++|.++++|+|..||.|.+|.--..+.. .. ...
T Consensus 201 ------------~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~-~~----------------------t~t 245 (792)
T KOG1963|consen 201 ------------TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD-SE----------------------TCT 245 (792)
T ss_pred ------------hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc-cc----------------------cce
Confidence 0111122388999999999999999999999975431000 00 011
Q ss_pred ccCCCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 305 KLTPTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 305 ~~~~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
-+.-|...+.+++|+++|. +++|+.++.+.+|.+.+++... + +.-..+|..+.++ +|+
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf----L----------------PRLgs~I~~i~vS-~ds 304 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF----L----------------PRLGSPILHIVVS-PDS 304 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc----c----------------cccCCeeEEEEEc-CCC
Confidence 2345777888999999996 6778889999999998876321 1 1224567777787 899
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
.+.+....|..|.+....+-........-. +. .++- -...
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~------~~------------------------------~~~~----k~~~ 344 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIK------PP------------------------------TPST----KTRP 344 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCcc------CC------------------------------Cccc----cccc
Confidence 999999999999998875433221110000 00 0000 0112
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-----------cCCCCEEEEEEccCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-----------DHSAAVTAVKFTCNG 532 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~ 532 (882)
.+-.+.++++|..+ .++-.+..|.|++||+.+... +..+. .+...++.++.+..|
T Consensus 345 ~~l~t~~~idpr~~-------------~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 345 QSLTTGVSIDPRTN-------------SLVLNGHPGHVQFYDLYTDST-IYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cccceeEEEcCCCC-------------ceeecCCCceEEEEeccccce-eeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 23344455666333 577777888999999887522 22221 123457788888889
Q ss_pred CEEEEEeC--------C--CeEEEEeCccCccceeeeccceecccCCceEEEEEec-CCC-EEEEEeCCCcEEEEEccCC
Q 047837 533 RKILSCSA--------D--RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-TME-VVITVGQDKKINSFSIAAG 600 (882)
Q Consensus 533 ~~l~s~~~--------d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~-~l~~~~~d~~v~iwd~~~~ 600 (882)
.++++.-. | -.+++|-.........+... ...+|...+...++.+ ... .+++++.||.+++|-+...
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~-I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK-INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE-EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 99998643 2 34788987755544443322 2234445555555444 333 7999999999999998432
Q ss_pred ceE--------EEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC-eEEEEEccCCCCeEEEEECCCC--CEE
Q 047837 601 KLI--------RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG-EMVAKAMGHGEVITGVTFLPDC--KHI 669 (882)
Q Consensus 601 ~~~--------~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~d~--~~l 669 (882)
+.+ ......-|..++++++|+.||..|+++ .+++|.+||..+. +.......-..++..++|.... ...
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA 568 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc
Confidence 211 111112478899999999999888777 4669999999884 3333332233445555553321 122
Q ss_pred EEEeCCCeEEEEeCCCCCCCc
Q 047837 670 VSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 670 ~s~~~dg~i~vwd~~~~~~~~ 690 (882)
+.......+.+|++-......
T Consensus 569 ~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 569 LVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred eeeccCceEehHhhhhhheec
Confidence 334455788899987655544
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.8e-23 Score=199.74 Aligned_cols=297 Identities=16% Similarity=0.197 Sum_probs=220.7
Q ss_pred EeeCC-CcEEEEecCCCceeeecccCCcc--ceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc
Q 047837 388 TCSAD-GTIRLWDLALQSELSKDVLGHES--LNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD 464 (882)
Q Consensus 388 t~~~d-g~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 464 (882)
+++.| ..+.+||+.++....++.-.... ..........++++. .....+..+.+.+..+......-.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq----------~~rp~l~vw~i~k~~~~~q~~v~P 81 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQ----------LKRPLLHVWEILKKDQVVQYIVLP 81 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeec----------ccCccccccccCchhhhhhhcccc
Confidence 33444 45999999999877665433110 000111111122111 111123334443333322223345
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
+.|.+++-+|.+. +++.|+..|.+++|.+.++ .++..+.+|-..|+++.|+-||.+|++++.||.|
T Consensus 82 g~v~al~s~n~G~-------------~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 82 GPVHALASSNLGY-------------FLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cceeeeecCCCce-------------EEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 7788888888887 8888889999999999998 8888889999999999999999999999999999
Q ss_pred EEEeCccCc---cceeeeccceecccCCceEEEEEecCC--CEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEE
Q 047837 545 VVRDVVETN---SAYKISRRHQQLASQGTVYDMDIDPTM--EVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVT 619 (882)
Q Consensus 545 ~vwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 619 (882)
.+|.+-.-- ........+....|.-+|+++...+.| .+|++++.|.++++||+..|.++.++. ....+.+++
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~---fp~si~av~ 224 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT---FPSSIKAVA 224 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe---cCCcceeEE
Confidence 999875311 111222233344566789999888764 589999999999999999999999885 567899999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccC----------------CeEEEEEccCCC--CeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 620 VDPSGSYLVCSYSNKSICLYDFIS----------------GEMVAKAMGHGE--VITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 620 ~spdg~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~h~~--~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
.+|-++.+.+|+.+|.|.+.++.. +..+..+.||.+ .|++|+.+-||..|++|+.||.|+||
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 999999999999999999988743 234667888988 99999999999999999999999999
Q ss_pred eCCCCCCCcccC-CCCCcccEEEecCCCeEE
Q 047837 682 EKYGILPPRNFA-QPAALSPIIFCEEEDQKC 711 (882)
Q Consensus 682 d~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~ 711 (882)
|+...+.++++. ..++++.+.+-|-....+
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred ecchHHHHHHHhhhccccceeEeecccccee
Confidence 999999998887 677787777755544333
No 129
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8.7e-23 Score=205.12 Aligned_cols=317 Identities=14% Similarity=0.211 Sum_probs=241.8
Q ss_pred eeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCc
Q 047837 234 SVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNA 313 (882)
Q Consensus 234 ~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (882)
......|...+.+++..|.|.+|++|+.||+||||.+.+|.++.++.+ ...|
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----------------------------d~~I 444 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----------------------------DSEI 444 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----------------------------ccee
Confidence 344566778889999999999999999999999999999999988752 2346
Q ss_pred EEEeecCCCe--EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe--
Q 047837 314 IACQFSTSEK--LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC-- 389 (882)
Q Consensus 314 ~~~~~s~~~~--ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~-- 389 (882)
.+++|+|.+. +|++..+..+.|.+..-+.... .+ +....|+++
T Consensus 445 ~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e-----~~----------------------------~t~ell~~~~~ 491 (733)
T KOG0650|consen 445 RSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLE-----VG----------------------------PTKELLASAPN 491 (733)
T ss_pred EEEEecCCCCceeEEEEecCceEEeCccccchhh-----hc----------------------------chhhhhhcCCC
Confidence 7899999875 5555555557666653331110 00 112223332
Q ss_pred --eCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 390 --SADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 390 --~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
..|+.+..|.-........ ..++.-.|...|
T Consensus 492 ~~~p~~~~~~W~~~~~~e~~~-----------------------------------------------~v~~~I~~~k~i 524 (733)
T KOG0650|consen 492 ESEPDAAVVTWSRASLDELEK-----------------------------------------------GVCIVIKHPKSI 524 (733)
T ss_pred ccCCcccceeechhhhhhhcc-----------------------------------------------ceEEEEecCCcc
Confidence 2355777787654333211 123455788999
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcC---CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGR---DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
..+.|+..|. +|++... ...|.|+++... .....|....+.|.++.|+|...+|++++.. .|
T Consensus 525 ~~vtWHrkGD-------------YlatV~~~~~~~~VliHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~v 589 (733)
T KOG0650|consen 525 RQVTWHRKGD-------------YLATVMPDSGNKSVLIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SV 589 (733)
T ss_pred ceeeeecCCc-------------eEEEeccCCCcceEEEEecccc-cccCchhhcCCceeEEEecCCCceEEEEecc-ce
Confidence 9999999998 8887754 457889998765 3445566667889999999999999998875 59
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECCC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDPS 623 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~spd 623 (882)
++||+.......++.... ..|..++++|.|.-|+.++.|+.+.+||+.-. +..+++. -|...+++++|++.
T Consensus 590 RiYdL~kqelvKkL~tg~------kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~r 661 (733)
T KOG0650|consen 590 RIYDLSKQELVKKLLTGS------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKR 661 (733)
T ss_pred EEEehhHHHHHHHHhcCC------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccc
Confidence 999998765555554444 48999999999999999999999999999854 5666776 78999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccC-------C--eEEEEEccCCCC----eEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 624 GSYLVCSYSNKSICLYDFIS-------G--EMVAKAMGHGEV----ITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 624 g~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~~h~~~----v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
-.++|+|+.||++.|+.-.- . -++..+.+|... |....|+|...+|++++.||+|++|
T Consensus 662 yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 662 YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999999999999986421 1 346778888765 9999999999999999999999998
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.3e-23 Score=215.78 Aligned_cols=301 Identities=21% Similarity=0.279 Sum_probs=227.8
Q ss_pred EEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCC
Q 047837 314 IACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADG 393 (882)
Q Consensus 314 ~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg 393 (882)
.++...++-.-++..+...+.++.+........+....+.... -.-.+..+.|+.-..++|+|++..|
T Consensus 43 nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn------------~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQN------------KFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccc------------eeeehhhcccccchhhhheeecCCC
Confidence 3566667766666666777788877665544443333221111 1123445667656788999999999
Q ss_pred cEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEe
Q 047837 394 TIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFS 473 (882)
Q Consensus 394 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~ 473 (882)
.|.+||+..... +.....+..|...+.++.|+
T Consensus 111 ~i~vWdlnk~~r------------------------------------------------nk~l~~f~EH~Rs~~~ldfh 142 (839)
T KOG0269|consen 111 VISVWDLNKSIR------------------------------------------------NKLLTVFNEHERSANKLDFH 142 (839)
T ss_pred cEEEEecCcccc------------------------------------------------chhhhHhhhhccceeeeeec
Confidence 999999975210 11123467899999999999
Q ss_pred cCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccC
Q 047837 474 LSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVET 552 (882)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~ 552 (882)
+... ++|++|+.||+|++||++.. .-..++.+....|++|+|+| .+.+++++...|.+++||++..
T Consensus 143 ~tep------------~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 143 STEP------------NILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred cCCc------------cEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 9876 48999999999999999987 66677778899999999999 6889999999999999999976
Q ss_pred ccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCE-EEEEe
Q 047837 553 NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSY-LVCSY 631 (882)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~ 631 (882)
....... .+|.++|.++.|+|++.+||+|++|++|+|||+.+.+.-..... ....++.++.|-|+.++ ||+++
T Consensus 210 ~r~~~k~-----~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 210 DRCEKKL-----TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred hhHHHHh-----hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhh
Confidence 6554433 45669999999999999999999999999999987654332221 34578999999998765 55554
Q ss_pred --CCCcEEEEEccCC-eEEEEEccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCCCcccC
Q 047837 632 --SNKSICLYDFISG-EMVAKAMGHGEVITGVTFLP-DCKHIVSVGGDGLQRVKEKYGILPPRNFA 693 (882)
Q Consensus 632 --~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 693 (882)
.|-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||+|..-.+++...+..+.
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pid~a 349 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPIDLA 349 (839)
T ss_pred ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccChhhhc
Confidence 4779999999764 56778888999999999965 56689999999998876666655554443
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3e-21 Score=202.13 Aligned_cols=256 Identities=11% Similarity=0.118 Sum_probs=180.9
Q ss_pred cceeeeccCCCcEE-EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEE
Q 047837 373 VSCVARGCTGGVSF-STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAV 451 (882)
Q Consensus 373 v~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (882)
+.+++|+ +++..+ ++++.++.|++||..+++......
T Consensus 33 ~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------- 70 (300)
T TIGR03866 33 PRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLP----------------------------------------- 70 (300)
T ss_pred CCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEecc-----------------------------------------
Confidence 4456776 666655 566778899999988765432110
Q ss_pred cCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEE-EEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc
Q 047837 452 SSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFL-ASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC 530 (882)
Q Consensus 452 s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~ 530 (882)
.+ ..+..++|+|+++ .+ +++..++.+++||+.+. ..+..+.. ...+.+++|+|
T Consensus 71 ----------~~-~~~~~~~~~~~g~-------------~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~~~~~~~~~ 124 (300)
T TIGR03866 71 ----------SG-PDPELFALHPNGK-------------ILYIANEDDNLVTVIDIETR-KVLAEIPV-GVEPEGMAVSP 124 (300)
T ss_pred ----------CC-CCccEEEECCCCC-------------EEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCCcceEEECC
Confidence 11 1123456666665 45 45567899999999875 55555542 34468899999
Q ss_pred CCCEEEEEeCCC-eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE-eCCCcEEEEEccCCceEEEEEe
Q 047837 531 NGRKILSCSADR-SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV-GQDKKINSFSIAAGKLIRSFKQ 608 (882)
Q Consensus 531 ~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~ 608 (882)
++++++++..++ .+.+||..+......... ......++|+|++++|+++ ..++.|++||+++++.+..+..
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence 999999888765 567789875543322211 1245779999999988655 4689999999999988777652
Q ss_pred ccC-----CCCcEEEEECCCCCEEEE-EeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEE-eCCCeEEEE
Q 047837 609 AKD-----FGDPMKVTVDPSGSYLVC-SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSV-GGDGLQRVK 681 (882)
Q Consensus 609 ~~~-----~~~v~~~~~spdg~~l~~-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~-~~dg~i~vw 681 (882)
... ......++|+|+++++++ ...++.+.+||.++++.+..+. +...+.+++|+|+|++|+++ +.++.|++|
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 211 123457899999998654 3456789999999998876654 45679999999999999886 468999999
Q ss_pred eCCCCCCCcccCCCCCcccEEEe
Q 047837 682 EKYGILPPRNFAQPAALSPIIFC 704 (882)
Q Consensus 682 d~~~~~~~~~~~~~~~~~~~~~s 704 (882)
|+.++.....+........++|+
T Consensus 277 d~~~~~~~~~~~~~~~~~~~~~~ 299 (300)
T TIGR03866 277 DVAALKVIKSIKVGRLPWGVVVR 299 (300)
T ss_pred ECCCCcEEEEEEcccccceeEeC
Confidence 99998887777665555556554
No 132
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=5.8e-21 Score=193.98 Aligned_cols=278 Identities=15% Similarity=0.273 Sum_probs=199.7
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeee
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMK 123 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~ 123 (882)
.|..+||-|||..|..+. +..+.|||...|.++.+|++|++.|.|+||+.||+++|+|+ ..|.||+-+-.-.+
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-- 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--
Confidence 488999999998877763 34799999999999999999999999999999999999999 99999985433222
Q ss_pred eecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccC
Q 047837 124 LKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDN 203 (882)
Q Consensus 124 ~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 203 (882)
+. .|.+.|.++.|+|=...|++++-...-+|..+.......+.
T Consensus 89 -kY-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~ks----------------------------------- 131 (1081)
T KOG1538|consen 89 -KY-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKS----------------------------------- 131 (1081)
T ss_pred -ee-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhh-----------------------------------
Confidence 21 24489999999999999999998888899876554311000
Q ss_pred CcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccC
Q 047837 204 GVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSE 283 (882)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 283 (882)
...+.+++|..||++++.|-.+|+|.+-+. +++....+.
T Consensus 132 -------------------------------------s~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~--- 170 (1081)
T KOG1538|consen 132 -------------------------------------SSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIE--- 170 (1081)
T ss_pred -------------------------------------heeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEe---
Confidence 112378999999999999999999988643 222221111
Q ss_pred cccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeeccc
Q 047837 284 AKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNL 363 (882)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 363 (882)
...|...+||++++.
T Consensus 171 -----------------------------------------------------------------Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 171 -----------------------------------------------------------------RPGGSNSPIWSICWN 185 (1081)
T ss_pred -----------------------------------------------------------------CCCCCCCCceEEEec
Confidence 112233344444432
Q ss_pred CCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccc
Q 047837 364 GCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVST 443 (882)
Q Consensus 364 ~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (882)
+... +.....+++.....++.++.+.... +.+.
T Consensus 186 p~sg------------~G~~di~aV~DW~qTLSFy~LsG~~-Igk~---------------------------------- 218 (1081)
T KOG1538|consen 186 PSSG------------EGRNDILAVADWGQTLSFYQLSGKQ-IGKD---------------------------------- 218 (1081)
T ss_pred CCCC------------CCccceEEEEeccceeEEEEeccee-eccc----------------------------------
Confidence 1100 0123467777777777777776432 2110
Q ss_pred cCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCE
Q 047837 444 QGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAV 523 (882)
Q Consensus 444 ~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v 523 (882)
+ .-.-.-.|+.+.++|. +++.|+.|+.+++|.-. + ..+.++......|
T Consensus 219 ---r--------------~L~FdP~CisYf~NGE-------------y~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WI 266 (1081)
T KOG1538|consen 219 ---R--------------ALNFDPCCISYFTNGE-------------YILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWI 266 (1081)
T ss_pred ---c--------------cCCCCchhheeccCCc-------------EEEEccCCCceEEEeec-C-eEEeeccccceeE
Confidence 0 0111224566777776 99999999999999854 3 5666777778899
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 524 TAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 524 ~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
..++..|++++++.|+.||+|-.|++.
T Consensus 267 WtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999999999999999999999874
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.4e-22 Score=182.07 Aligned_cols=256 Identities=18% Similarity=0.261 Sum_probs=195.9
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|..-|.++.|. .-|+.+|+|+.|++++|||.........
T Consensus 10 s~h~DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~-------------------------------------- 50 (361)
T KOG2445|consen 10 SGHKDLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWS-------------------------------------- 50 (361)
T ss_pred cCCcceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceE--------------------------------------
Confidence 4577778888887 8899999999999999999764432111
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC--------CceeEEEeec
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR--------NFDLIESIDD 518 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~--------~~~~~~~~~~ 518 (882)
. .-.+..|.+.|..+.|-+..- |+.+|+++.|+++.||.=.. .+....++..
T Consensus 51 ----~-----Ts~Wrah~~Si~rV~WAhPEf-----------GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D 110 (361)
T KOG2445|consen 51 ----C-----TSSWRAHDGSIWRVVWAHPEF-----------GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD 110 (361)
T ss_pred ----E-----eeeEEecCCcEEEEEecCccc-----------cceEEEEecCCceeeeeecccccccccceeEEEEEeec
Confidence 0 123778999999999977542 56999999999999997521 2234566777
Q ss_pred CCCCEEEEEEcc--CCCEEEEEeCCCeEEEEeCccCccceeeeccceec-------ccCCceEEEEEecC---CCEEEEE
Q 047837 519 HSAAVTAVKFTC--NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL-------ASQGTVYDMDIDPT---MEVVITV 586 (882)
Q Consensus 519 h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~---~~~l~~~ 586 (882)
....|+++.|.| -|-.||+++.||.++||+.............+... .+..+..|+.|+|. ..+||+|
T Consensus 111 srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 111 SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence 889999999999 58899999999999999986543333322222211 24457789999974 3578887
Q ss_pred eCC-----CcEEEEEccCC--c--eEEEEEeccCCCCcEEEEECCC----CCEEEEEeCCCcEEEEEccCC---------
Q 047837 587 GQD-----KKINSFSIAAG--K--LIRSFKQAKDFGDPMKVTVDPS----GSYLVCSYSNKSICLYDFISG--------- 644 (882)
Q Consensus 587 ~~d-----~~v~iwd~~~~--~--~~~~~~~~~~~~~v~~~~~spd----g~~l~~~~~dg~i~iwd~~~~--------- 644 (882)
+.+ +.+.||....+ + .+.++. +|..+|+.++|.|+ -.+||+++.|| |+||.+...
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~ 267 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV 267 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc
Confidence 765 47888887543 2 333444 89999999999995 34799999999 999998731
Q ss_pred -----------eEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 645 -----------EMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 645 -----------~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+.+..+.+|.+.|..+.|.-.|..|.+.|.||.||+|...
T Consensus 268 ~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 268 LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 3456678899999999999999999999999999999753
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.2e-23 Score=182.72 Aligned_cols=251 Identities=16% Similarity=0.206 Sum_probs=192.6
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|..+... --|++|+|++.|++|+|+..+......
T Consensus 10 H~D~IHda~lD-yygkrlATcsSD~tVkIf~v~~n~~s~----------------------------------------- 47 (299)
T KOG1332|consen 10 HEDMIHDAQLD-YYGKRLATCSSDGTVKIFEVRNNGQSK----------------------------------------- 47 (299)
T ss_pred hhhhhhHhhhh-hhcceeeeecCCccEEEEEEcCCCCce-----------------------------------------
Confidence 33333333333 568999999999999999998654311
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC-ceeEEEeecCCCCEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN-FDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~h~~~v~~~~ 527 (882)
....+.+|.++|..++|-...- |.+||+++.||.|.||.-..+ +........|...|++++
T Consensus 48 -------ll~~L~Gh~GPVwqv~wahPk~-----------G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~ 109 (299)
T KOG1332|consen 48 -------LLAELTGHSGPVWKVAWAHPKF-----------GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVA 109 (299)
T ss_pred -------eeeEecCCCCCeeEEeeccccc-----------CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeec
Confidence 1235789999999999976322 449999999999999997764 334556778999999999
Q ss_pred EccC--CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC---C-----------CEEEEEeCCCc
Q 047837 528 FTCN--GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT---M-----------EVVITVGQDKK 591 (882)
Q Consensus 528 ~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~-----------~~l~~~~~d~~ 591 (882)
|.|. |-.|++++.||.|.|.+.+.... . ........|.-.|++++|.|. | +.|++|+.|..
T Consensus 110 wapheygl~LacasSDG~vsvl~~~~~g~-w--~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~ 186 (299)
T KOG1332|consen 110 WAPHEYGLLLACASSDGKVSVLTYDSSGG-W--TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL 186 (299)
T ss_pred ccccccceEEEEeeCCCcEEEEEEcCCCC-c--cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence 9994 67899999999999999875511 1 111122345568999999985 4 56999999999
Q ss_pred EEEEEccCCc--eEEEEEeccCCCCcEEEEECCCC----CEEEEEeCCCcEEEEEccCC--eE-EEEEccCCCCeEEEEE
Q 047837 592 INSFSIAAGK--LIRSFKQAKDFGDPMKVTVDPSG----SYLVCSYSNKSICLYDFISG--EM-VAKAMGHGEVITGVTF 662 (882)
Q Consensus 592 v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~spdg----~~l~~~~~dg~i~iwd~~~~--~~-~~~~~~h~~~v~~l~~ 662 (882)
|+||+...++ .-++|. +|.+.|..++|.|.- .+||+++.||++.||-...- +. ...+......+..+.|
T Consensus 187 VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW 264 (299)
T KOG1332|consen 187 VKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW 264 (299)
T ss_pred eeeeecCCcchhhhhhhh--hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE
Confidence 9999998763 334455 899999999999953 57999999999999987521 11 1223335678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCC
Q 047837 663 LPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 663 s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
|..|.+|+.++.|+.|.+|.-.
T Consensus 265 S~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 265 SLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eccccEEEEecCCcEEEEEEeC
Confidence 9999999999999999999754
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=207.61 Aligned_cols=280 Identities=15% Similarity=0.196 Sum_probs=215.6
Q ss_pred CCcEEEeecCCCeEEE-EeCCceEEEEEcccc-cccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 311 PNAIACQFSTSEKLVV-VYGDHSLYVWDIHDV-NEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 311 ~~~~~~~~s~~~~ll~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
..-..++|.|+|.+|+ ++.||.|++|+.... +.+.. +..+. ..|.+++. .+..|++
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t---i~~~g----------------~~v~~ia~---~s~~f~~ 71 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET---IDISG----------------ELVSSIAC---YSNHFLT 71 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch---hhccC----------------ceeEEEee---cccceEE
Confidence 3345789999998554 566999999998655 22221 11133 34444443 4568999
Q ss_pred eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 389 CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
|+.+++|.+|....+..-. ++....-++.
T Consensus 72 ~s~~~tv~~y~fps~~~~~---------------------------------------------------iL~Rftlp~r 100 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDT---------------------------------------------------ILARFTLPIR 100 (933)
T ss_pred eeccceEEEeeCCCCCccc---------------------------------------------------eeeeeeccce
Confidence 9999999999998765311 1233455677
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
+++|+.++. ++|.|+.|-.|++.+.... .....+.+|..+|.++.|+|.+++||+.+.||.|++||
T Consensus 101 ~~~v~g~g~-------------~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 101 DLAVSGSGK-------------MIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred EEEEecCCc-------------EEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 778887777 8999999999999999876 67788999999999999999999999999999999999
Q ss_pred CccCccceeeeccceecc--cCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCE
Q 047837 549 VVETNSAYKISRRHQQLA--SQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
+.++.....+........ ....+..++|+|++..++..+.|+.|++|+...+.....+....+...+..++|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 997765544433222211 134677899999999999999999999999999999999986666666999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 627 LVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
||+++.||.|.|||+++-+. ......|.+++|.|+..-|-....-|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999998322 2245789999999998876555544544443
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-22 Score=180.93 Aligned_cols=240 Identities=16% Similarity=0.257 Sum_probs=190.8
Q ss_pred eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCC
Q 047837 323 KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLAL 402 (882)
Q Consensus 323 ~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~ 402 (882)
++++++.|++|+|+.+...........+.||.++||.+.|. | |.-|.+||+++.||.|.+|.-+.
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-----h----------Pk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-----H----------PKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-----c----------cccCcEeeEeecCceEEEEecCC
Confidence 57778889999999999887777778899999999998874 1 35789999999999999999887
Q ss_pred CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccc
Q 047837 403 QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVL 482 (882)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 482 (882)
++-.+ ......|...|++++|-|.+-
T Consensus 90 g~w~k-------------------------------------------------~~e~~~h~~SVNsV~waphey----- 115 (299)
T KOG1332|consen 90 GRWTK-------------------------------------------------AYEHAAHSASVNSVAWAPHEY----- 115 (299)
T ss_pred Cchhh-------------------------------------------------hhhhhhhcccceeeccccccc-----
Confidence 64221 123557999999999999865
Q ss_pred eeccCCceEEEEEcCCCcEEEEEcCCC--ceeEEEeecCCCCEEEEEEccC---C-----------CEEEEEeCCCeEEE
Q 047837 483 EEVTDSHYFLASGGRDRTIHLYDVKRN--FDLIESIDDHSAAVTAVKFTCN---G-----------RKILSCSADRSLVV 546 (882)
Q Consensus 483 ~~~~~~~~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~---~-----------~~l~s~~~dg~i~v 546 (882)
+-.|++++.||.|.|.+.+.. ....+....|.-.|+++.|.|. | +.|++++.|..|+|
T Consensus 116 ------gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 116 ------GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKI 189 (299)
T ss_pred ------ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceee
Confidence 458999999999999998764 3344566789999999999985 5 67999999999999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCC----CEEEEEeCCCcEEEEEccCC--ceEEEEEeccCCCCcEEEEE
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM----EVVITVGQDKKINSFSIAAG--KLIRSFKQAKDFGDPMKVTV 620 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~ 620 (882)
|+...+. .. ......+|.+.|+.++|.|.- .+||++++||++.||-.... .-..++. +.....+..+.|
T Consensus 190 W~~~~~~--w~--~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSW 264 (299)
T KOG1332|consen 190 WKFDSDS--WK--LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSW 264 (299)
T ss_pred eecCCcc--hh--hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEE
Confidence 9998652 11 122244667899999999964 47999999999999987632 1111221 134578999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcc
Q 047837 621 DPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 621 spdg~~l~~~~~dg~i~iwd~~ 642 (882)
|..|.+|++++.|+.|.+|.-.
T Consensus 265 S~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 265 SLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eccccEEEEecCCcEEEEEEeC
Confidence 9999999999999999999854
No 137
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.8e-22 Score=205.41 Aligned_cols=269 Identities=22% Similarity=0.317 Sum_probs=211.0
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|+..|..+++. ++..++++++||++++|+-..++-+..
T Consensus 11 ~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~-------------------------------------- 50 (745)
T KOG0301|consen 11 EGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLET-------------------------------------- 50 (745)
T ss_pred ccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccc--------------------------------------
Confidence 4466666666654 566899999999999999865543321
Q ss_pred EEEEEcCCCCEEEeeeccceEEE-EEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILS-LSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTA 525 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~ 525 (882)
..+.+|.+-|.. +++-+..+ ..+++|+.|..|.+|..... .+..++.+|...|.+
T Consensus 51 -----------~~~~~~~g~i~~~i~y~e~~~------------~~l~~g~~D~~i~v~~~~~~-~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 51 -----------HAFEGPKGFIANSICYAESDK------------GRLVVGGMDTTIIVFKLSQA-EPLYTLKGHKSNVCS 106 (745)
T ss_pred -----------eecccCcceeeccceeccccC------------cceEeecccceEEEEecCCC-Cchhhhhccccceee
Confidence 123345555555 66654222 26999999999999999876 889999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRS 605 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 605 (882)
+....++. +++++.|.++++|....- ... ..+|...|+++++-|++ .+++|+.|.+|++|.- ++.+++
T Consensus 107 ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~t 174 (745)
T KOG0301|consen 107 LSIGEDGT-LISGSWDSTAKVWRIGEL--VYS------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKT 174 (745)
T ss_pred eecCCcCc-eEecccccceEEecchhh--hcc------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhh
Confidence 99887777 999999999999987632 211 34556899999999988 8999999999999986 788999
Q ss_pred EEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 606 FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 606 ~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
|. +|...|..+++-+++. +++++.||.|++|++ +|+++.++.+|+.-|.++....++..++++++|++++||+..
T Consensus 175 f~--gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~- 249 (745)
T KOG0301|consen 175 FS--GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD- 249 (745)
T ss_pred hc--cchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-
Confidence 98 8999999999998764 557779999999998 899999999999999999988888999999999999999987
Q ss_pred CCCCcccCCCC-Cccc-------EEEecCCCeEEEecccc
Q 047837 686 ILPPRNFAQPA-ALSP-------IIFCEEEDQKCRMDSVN 717 (882)
Q Consensus 686 ~~~~~~~~~~~-~~~~-------~~~s~~~~~~~~~~~~~ 717 (882)
.....+.+|. .+.. -+..+..|+.++++..+
T Consensus 250 -e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 250 -ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred -ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 4444444554 2222 24445556666665554
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.5e-22 Score=191.91 Aligned_cols=289 Identities=14% Similarity=0.155 Sum_probs=218.9
Q ss_pred CCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc-E
Q 047837 308 PTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV-S 385 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~-~ 385 (882)
|....+.++.|.|... +++++.|++++||.++..... .|.++.+ ...+|.+.+|. ++|. .
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----------~lqS~~l------~~fPi~~a~f~-p~G~~~ 272 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----------KLQSIHL------EKFPIQKAEFA-PNGHSV 272 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----------hheeeee------ccCccceeeec-CCCceE
Confidence 5667788999999987 566777999999999754332 2222222 35678888998 6776 8
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
+++++....+..||+.+.+...-... .+. ...
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~---------------------------~g~---------------------e~~ 304 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPP---------------------------YGV---------------------EEK 304 (514)
T ss_pred EEecccceEEEEeeccccccccccCC---------------------------CCc---------------------ccc
Confidence 99999999999999987664321100 000 112
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLV 545 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 545 (882)
.+..+..+++++ +|+..+..|.|.+....++ +.+..++ -.+.|..++|+.|++.|++++.+|.|.
T Consensus 305 ~~e~FeVShd~~-------------fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 305 SMERFEVSHDSN-------------FIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred hhheeEecCCCC-------------eEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 233344444444 8999999999999998876 6666666 567899999999999999999999999
Q ss_pred EEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC------CceEEEEEeccCCCCcEEEE
Q 047837 546 VRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA------GKLIRSFKQAKDFGDPMKVT 619 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~ 619 (882)
+||++......+...... -.-+.++.++++.+||+|+..|.|.|||..+ .+++..+. .-...|++++
T Consensus 370 v~nl~~~~~~~rf~D~G~-----v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--NLtt~Itsl~ 442 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGS-----VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--NLTTAITSLQ 442 (514)
T ss_pred EEecCCcceEEEEeecCc-----cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh--hhheeeeeee
Confidence 999997644444322211 1345678889999999999999999999654 34555554 5567899999
Q ss_pred ECCCCCEEEEEeC--CCcEEEEEccCCeEEEEEccC---CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 620 VDPSGSYLVCSYS--NKSICLYDFISGEMVAKAMGH---GEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 620 ~spdg~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
|+||+++||.++. +..+++-.+.+......+... -+.|++|+|||.+.+|+.|-.+|.+.+|.+.
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999998764 568999999988877776543 3578999999999999999999999999874
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.2e-23 Score=212.97 Aligned_cols=213 Identities=15% Similarity=0.240 Sum_probs=186.1
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
.+++|+.|-.+-+|.+... ..+..+.+|..+|.++.|+++..+|+.|+.+|+|++||++....... ..+|...
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt------Ltgh~~~ 114 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT------LTGHLLN 114 (825)
T ss_pred eeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh------hhccccC
Confidence 8999999999999998765 45556899999999999999999999999999999999996654443 3445578
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~ 650 (882)
+..+.|+|-+.+.+.++.|..+.+||++...+.+.+. +|...+..+.|+|+|++++.+++|..++|||...|+.+..|
T Consensus 115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~--s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK--SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred cceeeeccceEEeccccccccceehhhhccCceeeec--CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence 9999999999999999999999999999888999998 79999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc-CCCCCcccEEEecCCCeEEE
Q 047837 651 MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF-AQPAALSPIIFCEEEDQKCR 712 (882)
Q Consensus 651 ~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~ 712 (882)
..|.+.|.++.|+|..-.|++|+.|+++++||+++....... .....+....|.+++.....
T Consensus 193 ~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 193 KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred ccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence 999999999999999999999999999999999976554433 23455667778777654433
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=9.4e-22 Score=192.47 Aligned_cols=259 Identities=16% Similarity=0.253 Sum_probs=199.2
Q ss_pred CCCCCCcEEEeecCCCeEEEE--eCCceEEEEEcccccccce-------eeeeecCcceeeeecccCCCCCCCCCcceee
Q 047837 307 TPTIPNAIACQFSTSEKLVVV--YGDHSLYVWDIHDVNEATR-------CCVLVSHSACIWDIKNLGCENMHDPSVSCVA 377 (882)
Q Consensus 307 ~~~~~~~~~~~~s~~~~ll~~--~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~ 377 (882)
..+.+.|..+.+-|+...+++ +..+.++|||......... -..+.| |...-++++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g----------------H~~eg~gls 184 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG----------------HEKEGYGLS 184 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe----------------ecccccccc
Confidence 346677778889999865544 3489999999865432211 113444 444455678
Q ss_pred eccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCE
Q 047837 378 RGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGST 457 (882)
Q Consensus 378 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 457 (882)
|++...-.|++++.|++|++||+.......+. ....
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~--------------------------------------------~~p~ 220 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKV--------------------------------------------VDPK 220 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCcc--------------------------------------------ccce
Confidence 88777788999999999999999865432100 1223
Q ss_pred EEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC-CceeEEEeecCCCCEEEEEEcc-CCCEE
Q 047837 458 LLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR-NFDLIESIDDHSAAVTAVKFTC-NGRKI 535 (882)
Q Consensus 458 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~-~~~~l 535 (882)
..+.+|...|..++|++... .++++.+.|+.+.|||+++ ..++.....+|...|.+++|+| ++..|
T Consensus 221 ~~~~~h~~~VeDV~~h~~h~------------~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 221 TIFSGHEDVVEDVAWHPLHE------------DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred EEeecCCcceehhhccccch------------hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence 46789999999999999765 3899999999999999995 3366778889999999999999 67788
Q ss_pred EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceE-----------
Q 047837 536 LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLI----------- 603 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~----------- 603 (882)
|+++.|++|.+||++..... .+....|...|..+.|+|.. ..||+++.|+.+.+||+..-...
T Consensus 289 AT~S~D~tV~LwDlRnL~~~-----lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp 363 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKP-----LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP 363 (422)
T ss_pred EeccCCCcEEEeechhcccC-----ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc
Confidence 99999999999999966553 34455667899999999975 47899999999999999642211
Q ss_pred -EEEEeccCCCCcEEEEECCCCCE-EEEEeCCCcEEEEEcc
Q 047837 604 -RSFKQAKDFGDPMKVTVDPSGSY-LVCSYSNKSICLYDFI 642 (882)
Q Consensus 604 -~~~~~~~~~~~v~~~~~spdg~~-l~~~~~dg~i~iwd~~ 642 (882)
..|...+|...|..+.|+|+..+ +++...|+.+.||.+.
T Consensus 364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 12444589999999999998765 6788999999999975
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.6e-23 Score=215.16 Aligned_cols=234 Identities=23% Similarity=0.391 Sum_probs=204.5
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.++..- ..++.+++|+.|-.+.+|.......+
T Consensus 27 hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i------------------------------------------ 63 (825)
T KOG0267|consen 27 HSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAI------------------------------------------ 63 (825)
T ss_pred hhhhhceeeee-ccceeeccCCCceeeccccccCCchh------------------------------------------
Confidence 45555555552 67888999999999999988643321
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
..+.+|..+|.++.|++... +|++|..+|+|++||+... +.++++.+|...+.++.|
T Consensus 64 ---------~S~~~hespIeSl~f~~~E~-------------LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 64 ---------TSLTGHESPIESLTFDTSER-------------LLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDF 120 (825)
T ss_pred ---------heeeccCCcceeeecCcchh-------------hhcccccCCceeeeehhhh-hhhhhhhccccCcceeee
Confidence 12678999999999999988 8999999999999999987 788899999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ 608 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 608 (882)
+|-+.+.+.++.|..+++||++..++..... +|...+..+.|+|+|++++.+++|..+++||+..|+.+..|.
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~- 193 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK- 193 (825)
T ss_pred ccceEEeccccccccceehhhhccCceeeec------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc-
Confidence 9999999999999999999998655444332 234688999999999999999999999999999999999998
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCC
Q 047837 609 AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 609 ~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg 676 (882)
.|.+.+..+.|+|..-+++.|+.|+++++||+++.+.+.........|.+++|+|+++.+++|..+.
T Consensus 194 -~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 194 -SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 8999999999999999999999999999999999999999888899999999999999988876544
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=189.14 Aligned_cols=287 Identities=20% Similarity=0.312 Sum_probs=205.9
Q ss_pred ccceeEEEECCCCCEEEEEc--CEEEEEEcCc--ceeeeeeecCCcccceeEEEEccCCC-EEEEECC-CcEEEEEcccC
Q 047837 88 LYGVECIAFSPDGEHLVTVG--GYIYLWNWRS--AMLVMKLKANSSCSAITSACFSSDAK-FIVTAGK-KHLKFWTIGSS 161 (882)
Q Consensus 88 ~~~V~~lafspdg~~Las~~--~~i~iWd~~~--g~~~~~~~~~~~~~~v~~l~fs~d~~-~l~~~~~-~~i~iwd~~~~ 161 (882)
.++|++|.|+|....|++++ ++++||.+.. ...++.+.... .+|.+++|.|+|. .+++++. ..+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeecccc
Confidence 46899999999999999999 9999998753 45666666665 8999999999999 7777777 67999999877
Q ss_pred ccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeec
Q 047837 162 ATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDL 241 (882)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~ 241 (882)
+........ ++. .
T Consensus 291 k~~k~~~~~------g~e-------------------------------------------------------------~ 303 (514)
T KOG2055|consen 291 KVTKLKPPY------GVE-------------------------------------------------------------E 303 (514)
T ss_pred ccccccCCC------Ccc-------------------------------------------------------------c
Confidence 662211111 111 1
Q ss_pred eeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 242 KVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 242 ~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
+.+....+++++++|+..+..|.|.+....+++.+..++.
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki---------------------------------------- 343 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI---------------------------------------- 343 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee----------------------------------------
Confidence 1125678899999999999999999999988877766541
Q ss_pred CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC
Q 047837 322 EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 322 ~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~ 401 (882)
.+.|..++|+ .+++.|+.++.+|.|.+||++
T Consensus 344 ------------------------------------------------eG~v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 344 ------------------------------------------------EGVVSDFTFS-SDSKELLASGGTGEVYVWNLR 374 (514)
T ss_pred ------------------------------------------------ccEEeeEEEe-cCCcEEEEEcCCceEEEEecC
Confidence 2233344444 556666666667777777776
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcc
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDV 481 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 481 (882)
....+.++.- +|. -.-+.++.++++.
T Consensus 375 ~~~~~~rf~D------------------------------------------~G~--------v~gts~~~S~ng~---- 400 (514)
T KOG2055|consen 375 QNSCLHRFVD------------------------------------------DGS--------VHGTSLCISLNGS---- 400 (514)
T ss_pred CcceEEEEee------------------------------------------cCc--------cceeeeeecCCCc----
Confidence 6544432210 010 0113344555555
Q ss_pred ceeccCCceEEEEEcCCCcEEEEEcCC-----CceeEEEeecCCCCEEEEEEccCCCEEEEEeC--CCeEEEEeCccCcc
Q 047837 482 LEEVTDSHYFLASGGRDRTIHLYDVKR-----NFDLIESIDDHSAAVTAVKFTCNGRKILSCSA--DRSLVVRDVVETNS 554 (882)
Q Consensus 482 ~~~~~~~~~~l~~g~~dg~v~iwd~~~-----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~ 554 (882)
++|+|+..|.|-|||..+ ..+++..+..-...|+++.|++|.+.||.++. +..+++-.+.+...
T Consensus 401 ---------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 401 ---------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred ---------eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 999999999999999664 34566677777889999999999999998774 56788887764332
Q ss_pred ceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 598 (882)
...+... ...-+.++|++|+|.+.+||.|..+|.+.+|.+.
T Consensus 472 FsNfP~~---n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 472 FSNFPTS---NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccCCCC---CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2222222 2233689999999999999999999999999864
No 143
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.6e-21 Score=177.84 Aligned_cols=252 Identities=15% Similarity=0.225 Sum_probs=177.3
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcc-eEeeeeeeeeeeeeeccccCe
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH-LVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 446 (882)
+|..+|++++|+ ++|+.|+|++.|..|.+||+..+..+.+.............+... ...+..++.......++....
T Consensus 63 aH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h 141 (405)
T KOG1273|consen 63 AHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH 141 (405)
T ss_pred ccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence 467778888888 889999999999999999999888887776665544444333322 222223333334444444444
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCC-CCEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHS-AAVTA 525 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~-~~v~~ 525 (882)
..+..++++..-....|. .|.+.++ ++++|...|.+.++|..+- +++..++-.. ..|..
T Consensus 142 ~~Lp~d~d~dln~sas~~------~fdr~g~-------------yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~ 201 (405)
T KOG1273|consen 142 SVLPKDDDGDLNSSASHG------VFDRRGK-------------YIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQ 201 (405)
T ss_pred eeccCCCccccccccccc------cccCCCC-------------EEEEecCcceEEEEecchh-eeeeeeeechheeeeE
Confidence 455555554432222222 4555555 9999999999999999886 7777776555 78999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccc---eeee--ccceecccCCceEEEEEecCCCEEEEEeC-CCcEEEEEccC
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSA---YKIS--RRHQQLASQGTVYDMDIDPTMEVVITVGQ-DKKINSFSIAA 599 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~ 599 (882)
+.|+..|+.|+.-+.|..|+.|+++.-... .... ...+.......-.+++|+.+|.+++.++. ...++||.-..
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 999999999999999999999998721111 1111 11111112234568899999999988774 45899999999
Q ss_pred CceEEEEEeccCC-CCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 600 GKLIRSFKQAKDF-GDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 600 ~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
|.+++.+. +.. .....+.|+|-...+++- ..|.++||....
T Consensus 282 GsLVKILh--G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 282 GSLVKILH--GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cceeeeec--CCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 99999997 555 567889999998888887 678999998643
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=179.39 Aligned_cols=164 Identities=20% Similarity=0.318 Sum_probs=126.3
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeee
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMK 123 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~ 123 (882)
.-.|+.|++.|.+||+|.. ||.|.|||+.|...-+.|.+|-.+|++++||+||+.|++++ ..|.+||+..|.++++
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~--nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCA--NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred ccceEEeccCcceeeeecc--CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 3789999999999999987 89999999999999899999999999999999999999999 9999999999999999
Q ss_pred eecCCcccceeEEEEccCC--CEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccc
Q 047837 124 LKANSSCSAITSACFSSDA--KFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWT 201 (882)
Q Consensus 124 ~~~~~~~~~v~~l~fs~d~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 201 (882)
+... .+|+.+.|+|.. +.+|+--+..-.+-++.....
T Consensus 103 irf~---spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-------------------------------------- 141 (405)
T KOG1273|consen 103 IRFD---SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-------------------------------------- 141 (405)
T ss_pred EEcc---CccceeeeccccCCeEEEEEecCCcEEEEecCCce--------------------------------------
Confidence 9987 799999999943 344443343333333332111
Q ss_pred cCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceeccccc
Q 047837 202 DNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLH 280 (882)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 280 (882)
.+....+++.+... ..+..|.+.|+++++|...|.+.+++..+.+++..+.
T Consensus 142 --------------~~Lp~d~d~dln~s--------------as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r 192 (405)
T KOG1273|consen 142 --------------SVLPKDDDGDLNSS--------------ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR 192 (405)
T ss_pred --------------eeccCCCccccccc--------------cccccccCCCCEEEEecCcceEEEEecchheeeeeee
Confidence 01111111111110 0344689999999999999999999999987775553
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=7e-20 Score=191.69 Aligned_cols=271 Identities=14% Similarity=0.139 Sum_probs=192.5
Q ss_pred ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCC
Q 047837 21 GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDG 100 (882)
Q Consensus 21 ~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg 100 (882)
++.|.+||+.+++.+..+.+|. .+.+++|+|||+.++++. ..++.|++||..+++.+..+..+.. +..++|+|++
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~-~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g 84 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCA-SDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNG 84 (300)
T ss_pred CCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEE-CCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCC
Confidence 5799999999999888887654 467899999999874432 3478999999999998887776544 5789999999
Q ss_pred CEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-C-cEEEEEcccCccceeccccCccce
Q 047837 101 EHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-K-HLKFWTIGSSATARTRLNKGTESL 175 (882)
Q Consensus 101 ~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~ 175 (882)
++|++++ +.|++||+.+++.+..+..+ ..+.+++|+||+++++++.. + .+.+||..++..... .
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~--------~ 153 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN--------V 153 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCeEEeEeeCC---CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE--------E
Confidence 9886654 89999999998888777643 45788999999999998876 3 467778765433000 0
Q ss_pred eecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCE
Q 047837 176 TLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKL 255 (882)
Q Consensus 176 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 255 (882)
.. ...+..++|+|++++
T Consensus 154 ~~---------------------------------------------------------------~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 154 LV---------------------------------------------------------------DQRPRFAEFTADGKE 170 (300)
T ss_pred Ec---------------------------------------------------------------CCCccEEEECCCCCE
Confidence 00 000156889999998
Q ss_pred EEEE-ecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEE-E-EeCCce
Q 047837 256 IACA-CSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLV-V-VYGDHS 332 (882)
Q Consensus 256 l~~~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll-~-~~~d~~ 332 (882)
|+++ ..++.|++||+++++.+..+....... + +.......++|+|+++.+ + .+.++.
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGV---H-----------------PEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeeccccc---c-----------------cccCCccceEECCCCCEEEEEcCCCCe
Confidence 8655 468999999999987765543211000 0 001112357899999853 3 345778
Q ss_pred EEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe-eCCCcEEEEecCCCceeeeccc
Q 047837 333 LYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC-SADGTIRLWDLALQSELSKDVL 411 (882)
Q Consensus 333 i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~ 411 (882)
+.+||..+.+.... + . +...+.+++|+ +++++|+++ +.+|.|++||+.+++.+.+...
T Consensus 231 i~v~d~~~~~~~~~---~-~----------------~~~~~~~~~~~-~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 231 VAVVDAKTYEVLDY---L-L----------------VGQRVWQLAFT-PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEEEECCCCcEEEE---E-E----------------eCCCcceEEEC-CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 99999976543211 1 0 12356678888 788888776 5689999999999887665443
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=200.21 Aligned_cols=268 Identities=15% Similarity=0.215 Sum_probs=208.6
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
.|..+.+.++|. ++|..|++++.||.|++|+........+.
T Consensus 11 aht~G~t~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~t-------------------------------------- 51 (933)
T KOG1274|consen 11 AHTGGLTLICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPET-------------------------------------- 51 (933)
T ss_pred hccCceEEEEEc-CCCCEEEEecCCCceEEeecCCcccCCch--------------------------------------
Confidence 577788888888 89999999999999999998764211110
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
+..+...|.+++.... .+++|+.+++|.+|.+.++ ..-..+...+-++++++
T Consensus 52 ------------i~~~g~~v~~ia~~s~---------------~f~~~s~~~tv~~y~fps~-~~~~iL~Rftlp~r~~~ 103 (933)
T KOG1274|consen 52 ------------IDISGELVSSIACYSN---------------HFLTGSEQNTVLRYKFPSG-EEDTILARFTLPIRDLA 103 (933)
T ss_pred ------------hhccCceeEEEeeccc---------------ceEEeeccceEEEeeCCCC-CccceeeeeeccceEEE
Confidence 1113334444443322 6999999999999999886 44334555677899999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
|+-+|+++|.|+.|-.|++-+.........+ + +|.++|.++.|+|++++||+.+-||.|++||+.++.+..++.
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-r-----gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-R-----GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheee-c-----ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 9999999999999999999998865544333 3 345899999999999999999999999999999998877764
Q ss_pred ecc------CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc--CCCCeEEEEECCCCCEEEEEeCCCeEE
Q 047837 608 QAK------DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG--HGEVITGVTFLPDCKHIVSVGGDGLQR 679 (882)
Q Consensus 608 ~~~------~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~d~~~l~s~~~dg~i~ 679 (882)
.-. ....+..++|+|+|..++..+.|+.|++|+..+++....+.. +...+..+.|+|+|+|||+++.||.|.
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 211 134567899999988888888999999999999988877765 455599999999999999999999999
Q ss_pred EEeCCCCCCCcccCCCCCcccEEEecCCCeEE
Q 047837 680 VKEKYGILPPRNFAQPAALSPIIFCEEEDQKC 711 (882)
Q Consensus 680 vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 711 (882)
|||+.+-. .......+..++|-+..+.+.
T Consensus 258 vWnv~t~~---~~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 258 VWNVDTHE---RHEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred EEecccch---hccccceeEEEecCCCCCeeE
Confidence 99998722 134445566677777766443
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.7e-21 Score=195.17 Aligned_cols=301 Identities=20% Similarity=0.232 Sum_probs=210.0
Q ss_pred EEEeecCCC---e-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe
Q 047837 314 IACQFSTSE---K-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC 389 (882)
Q Consensus 314 ~~~~~s~~~---~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~ 389 (882)
+++.|++.- . |+++..||.|.++|..........+. +.....|.+.|..+.|- +....|+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~-------------lk~~~aH~nAifDl~wa-pge~~lVsa 118 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQ-------------LKKPLAHKNAIFDLKWA-PGESLLVSA 118 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhh-------------hcccccccceeEeeccC-CCceeEEEc
Confidence 456666542 3 55566699999999865432211000 11123466666666666 577789999
Q ss_pred eCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEE
Q 047837 390 SADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILS 469 (882)
Q Consensus 390 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~ 469 (882)
+.|.++++||+.+...... . ..-+|.+.|.+
T Consensus 119 sGDsT~r~Wdvk~s~l~G~------------------------------------------------~-~~~GH~~SvkS 149 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGG------------------------------------------------R-LNLGHTGSVKS 149 (720)
T ss_pred cCCceeeeeeeccceeecc------------------------------------------------e-eecccccccch
Confidence 9999999999998765421 1 35589999999
Q ss_pred EEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--------------------------eeEEEeecCCCCE
Q 047837 470 LSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--------------------------DLIESIDDHSAAV 523 (882)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--------------------------~~~~~~~~h~~~v 523 (882)
++|.+..+ ..+++|+.||.|.|||++-.. +.......+...|
T Consensus 150 ~cf~~~n~------------~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 150 ECFMPTNP------------AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred hhhccCCC------------cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 99999877 389999999999999987321 0011122344455
Q ss_pred EE---EEEccCCCEEEEEeC-CCeEEEEeCccCccceeeeccce--eccc---CCceEEEEEecCCCEEEEEeCCCcEEE
Q 047837 524 TA---VKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKISRRHQ--QLAS---QGTVYDMDIDPTMEVVITVGQDKKINS 594 (882)
Q Consensus 524 ~~---~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~--~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~i 594 (882)
.+ +.+..|...||+++. |+.|+|||+++.....+...... ...+ .-.+.++.....|.+|++.+.|+.|++
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 55 556678899999887 99999999997654443322111 1111 235677888888899988888999999
Q ss_pred EEccCCc--eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-EEEEEccCCCCeEEEEECCCC-CEEE
Q 047837 595 FSIAAGK--LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE-MVAKAMGHGEVITGVTFLPDC-KHIV 670 (882)
Q Consensus 595 wd~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~d~-~~l~ 670 (882)
|++.+-. .+..+..+....--..-..+||+.+|++|+.|...++|.+.+.+ ....+.||.-.|++++|.|.. .-++
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~ 377 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA 377 (720)
T ss_pred EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence 9998643 23333311111112234579999999999999999999998764 456678999999999998742 3577
Q ss_pred EEeCCCeEEEEeCCCCCCC
Q 047837 671 SVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 671 s~~~dg~i~vwd~~~~~~~ 689 (882)
+++.|..+++|++......
T Consensus 378 TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 378 TCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred eeccCcceEEEeccCchhh
Confidence 7899999999999665443
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=2e-20 Score=183.91 Aligned_cols=294 Identities=19% Similarity=0.298 Sum_probs=216.6
Q ss_pred EEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEe--CCceE
Q 047837 256 IACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVY--GDHSL 333 (882)
Q Consensus 256 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~--~d~~i 333 (882)
|.+++....+++||.........+. . ....+.+..+.|.....+++++ +|..+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~--------~-----------------~t~~pg~~s~~w~~~n~lvvas~~gdk~~ 59 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYV--------H-----------------QTAEPGDFSFNWQRRNFLVVASMAGDKVM 59 (673)
T ss_pred eeeeccCCceEEeecccccCccccc--------c-----------------CCCCCcceeeeccccceEEEeecCCceeE
Confidence 4445556679999987654332221 0 0122236678888887766654 48899
Q ss_pred EEEEccccccc-ceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccC
Q 047837 334 YVWDIHDVNEA-TRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLG 412 (882)
Q Consensus 334 ~iwd~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 412 (882)
++|.-...... .....+.+ ..-.|++.. ....++++|+..+.|++||++..... +
T Consensus 60 ~~~~K~g~~~~Vp~~~k~~g------------------d~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~kl~h-r---- 115 (673)
T KOG4378|consen 60 RIKEKDGKTPEVPRVRKLTG------------------DNAFCVACA-SQSLYEISGGQSGCVKIWDLRAKLIH-R---- 115 (673)
T ss_pred EEecccCCCCccceeecccc------------------chHHHHhhh-hcceeeeccCcCceeeehhhHHHHHh-h----
Confidence 99976543111 11111111 123344433 34578999999999999999843322 1
Q ss_pred CccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEE
Q 047837 413 HESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFL 492 (882)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l 492 (882)
.+..|...|+++.++-... +|
T Consensus 116 ----------------------------------------------~lkdh~stvt~v~YN~~De-------------yi 136 (673)
T KOG4378|consen 116 ----------------------------------------------FLKDHQSTVTYVDYNNTDE-------------YI 136 (673)
T ss_pred ----------------------------------------------hccCCcceeEEEEecCCcc-------------ee
Confidence 2568899999999998887 99
Q ss_pred EEEcCCCcEEEEEcCCCceeEEEeecC-CCCEEEEEEccCCCE-EEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 493 ASGGRDRTIHLYDVKRNFDLIESIDDH-SAAVTAVKFTCNGRK-ILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 493 ~~g~~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
|+++..|.|.|..+.++ .....+... ...|.-+.|+|..+. |.+++.+|.|.+||+........... .|..+
T Consensus 137 Asvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~-----~HsAP 210 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE-----AHSAP 210 (673)
T ss_pred EEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh-----hccCC
Confidence 99999999999999887 444455433 455679999997665 55889999999999986555444443 34578
Q ss_pred eEEEEEecCCC-EEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC-CeEEE
Q 047837 571 VYDMDIDPTME-VVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS-GEMVA 648 (882)
Q Consensus 571 v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~-~~~~~ 648 (882)
...++|+|... +|++.+.|.+|.+||+...+....+. ...+.+.++|+++|.+|++|...|.|..||++. ..++.
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 99999999654 78899999999999999887777774 567899999999999999999999999999985 57788
Q ss_pred EEccCCCCeEEEEECCCC
Q 047837 649 KAMGHGEVITGVTFLPDC 666 (882)
Q Consensus 649 ~~~~h~~~v~~l~~s~d~ 666 (882)
.+..|...|++++|-+..
T Consensus 288 v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeeecccceeEEEeeecc
Confidence 899999999999997764
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-20 Score=188.53 Aligned_cols=197 Identities=16% Similarity=0.260 Sum_probs=154.6
Q ss_pred CCCCcceeeeccCCCcEEEEeeCC---CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSAD---GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
|...|..+.|+ ..|.+|++...+ ..|.|.++......
T Consensus 520 ~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK~~sQ--------------------------------------- 559 (733)
T KOG0650|consen 520 HPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSKRKSQ--------------------------------------- 559 (733)
T ss_pred cCCccceeeee-cCCceEEEeccCCCcceEEEEeccccccc---------------------------------------
Confidence 56677778887 899999988664 45667776643321
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEE
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTA 525 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~ 525 (882)
..+....+.|.++.|+|... +|++++. ..|+|||+... .+++.+......|..
T Consensus 560 ------------~PF~kskG~vq~v~FHPs~p-------------~lfVaTq-~~vRiYdL~kq-elvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 560 ------------SPFRKSKGLVQRVKFHPSKP-------------YLFVATQ-RSVRIYDLSKQ-ELVKKLLTGSKWISS 612 (733)
T ss_pred ------------CchhhcCCceeEEEecCCCc-------------eEEEEec-cceEEEehhHH-HHHHHHhcCCeeeee
Confidence 11233456788999999988 7777765 47999999874 677777777788999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc------C
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA------A 599 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~------~ 599 (882)
++.+|.|..|+.++.|+.+..+|+.-....++..+.|. ..+++++|++.-.++++|+.||++.||.-. .
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~-----~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE-----KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh-----hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 99999999999999999999999997776766666554 789999999999999999999999988532 1
Q ss_pred Cc---eEEEEEeccCCC----CcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 600 GK---LIRSFKQAKDFG----DPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 600 ~~---~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
.. .+..+. +|.. .|..+.|+|...+|++++.||+|++|
T Consensus 688 npliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeecc--CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 22 234444 5543 48899999999999999999999998
No 150
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=5.1e-20 Score=169.29 Aligned_cols=308 Identities=17% Similarity=0.216 Sum_probs=213.4
Q ss_pred eEeeceeeeeEEEecC-CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEE
Q 047837 237 KSVDLKVKNGFALSAS-SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIA 315 (882)
Q Consensus 237 ~~~~~~~~~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (882)
...|...|+++.+.+. |+++++|+.||.|.+||++.......-.+. ..|...+. ......|.-.+..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-----~k~~c~v~-------~~h~~~Hky~iss 106 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-----AKHKCIVA-------KQHENGHKYAISS 106 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-----eheeeecc-------ccCCccceeeeee
Confidence 3445566788888874 899999999999999999865421110000 00000000 1112233444556
Q ss_pred EeecCCC--eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccC--CCcEEEEeeC
Q 047837 316 CQFSTSE--KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCT--GGVSFSTCSA 391 (882)
Q Consensus 316 ~~~s~~~--~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~--~~~~l~t~~~ 391 (882)
+.|-|-+ -+.+++.|.++++||..+.+.... .. ..+.|..-+++|- ...++|+|..
T Consensus 107 ~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~----F~----------------me~~VYshamSp~a~sHcLiA~gtr 166 (397)
T KOG4283|consen 107 AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD----FK----------------MEGKVYSHAMSPMAMSHCLIAAGTR 166 (397)
T ss_pred eEEeeecCceeecccccceEEEeecccceeeEE----ee----------------cCceeehhhcChhhhcceEEEEecC
Confidence 7777654 466677799999999987654321 11 1334444444421 2457888889
Q ss_pred CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEE
Q 047837 392 DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLS 471 (882)
Q Consensus 392 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~ 471 (882)
|-.|++-|+.++... ..+.+|.+.|.++.
T Consensus 167 ~~~VrLCDi~SGs~s---------------------------------------------------H~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 167 DVQVRLCDIASGSFS---------------------------------------------------HTLSGHRDGVLAVE 195 (397)
T ss_pred CCcEEEEeccCCcce---------------------------------------------------eeeccccCceEEEE
Confidence 999999999987643 24779999999999
Q ss_pred EecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE--------------eecCCCCEEEEEEccCCCEEEE
Q 047837 472 FSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES--------------IDDHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~--------------~~~h~~~v~~~~~s~~~~~l~s 537 (882)
|+|..+ ..|++|+.||.|++||++....+... -..|.+.|..++|+.++.++++
T Consensus 196 Wsp~~e------------~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 196 WSPSSE------------WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred eccCce------------eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 999987 47899999999999999863222222 3457788999999999999999
Q ss_pred EeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEE
Q 047837 538 CSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMK 617 (882)
Q Consensus 538 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 617 (882)
++.|..+++|+...++...+-..........+.-..+. +.+...++.--.++.+.++++-+|..++.+. .|...+.+
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c 340 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--THLKRINC 340 (397)
T ss_pred ccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--cccceeeE
Confidence 99999999999987765433221111000001111122 3344555555567999999999999999998 77889999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 618 VTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 618 ~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
.++-|+-+...+|..|+.|..|-..
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EeecCchhhhhccccCCcccccccc
Confidence 9999999999999999999999863
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.1e-21 Score=198.03 Aligned_cols=208 Identities=16% Similarity=0.194 Sum_probs=163.3
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
..|...+.++.|++....+|++|+.||+|++||++..+....
T Consensus 130 ~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t-------------------------------------- 171 (839)
T KOG0269|consen 130 NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST-------------------------------------- 171 (839)
T ss_pred hhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc--------------------------------------
Confidence 346777788888878899999999999999999987654332
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
+.+....|..+.|+|... +.++++.+.|.+++||++...++...+..|.++|.++
T Consensus 172 -------------~~~nSESiRDV~fsp~~~------------~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 172 -------------FRSNSESIRDVKFSPGYG------------NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred -------------ccccchhhhceeeccCCC------------ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 223455677777777654 4899999999999999998778888899999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEe--CCCcEEEEEccCCc-e
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVG--QDKKINSFSIAAGK-L 602 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~--~d~~v~iwd~~~~~-~ 602 (882)
.|+|++.+||+|+.|++|+|||+...+......-. ...++.++.|-|+.. .|++++ .|-.|+|||++..- +
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEe-----ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999999999999999999865433322211 125899999999876 456655 47799999998543 3
Q ss_pred EEEEEeccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEEccCC
Q 047837 603 IRSFKQAKDFGDPMKVTVDP-SGSYLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 603 ~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~ 644 (882)
..++. .|...++.++|.. |...|.+++.||+|..-.++++
T Consensus 302 ~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeee--ccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 44555 7999999999966 5667889999998876555543
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.3e-20 Score=182.20 Aligned_cols=295 Identities=20% Similarity=0.220 Sum_probs=212.4
Q ss_pred CCCCCcEEEeecCCCe--EEEE-eCCceEEEEEcccccccc-eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 308 PTIPNAIACQFSTSEK--LVVV-YGDHSLYVWDIHDVNEAT-RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~--ll~~-~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
.+...+.+++|.|... ++++ ..-|+|-+||+.+.+... .... +..|..+|.++.|+|.+.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~----------------f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL----------------FTPHSGPVSGLKFSPANT 247 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE----------------eccCCccccceEecCCCh
Confidence 4567788999999863 5544 448999999996332211 1111 245778888899998899
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
..+++.+.||+|+.-|++......-.. ....
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s-------------------------------------------------~~~d 278 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLS-------------------------------------------------LDTD 278 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhh-------------------------------------------------cCcc
Confidence 999999999999999998654211000 0011
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADR 542 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg 542 (882)
......+.|+.+.. .++.+..=|...+||++++......+.-|...|.+++++| ...+||+++.|+
T Consensus 279 ~~~fs~~d~~~e~~-------------~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 279 NIWFSSLDFSAESR-------------SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred ceeeeeccccCCCc-------------cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 12233344444443 5666666679999999987666777778999999999999 556789999999
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc----CCceEEEEEeccCC----CC
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA----AGKLIRSFKQAKDF----GD 614 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~----~~~~~~~~~~~~~~----~~ 614 (882)
+.+|||++.-..... .......|...|.+..|||.+-.|++.+.|..|+|||.. .-....++. |.+. -.
T Consensus 346 T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT 422 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLT 422 (498)
T ss_pred ceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccccccc
Confidence 999999985433322 123345677899999999998889999999999999983 334444443 2221 23
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCC-CeEEE-EECCCCCEEEEEe-CCCeEEEEeC
Q 047837 615 PMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGE-VITGV-TFLPDCKHIVSVG-GDGLQRVKEK 683 (882)
Q Consensus 615 v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l-~~s~d~~~l~s~~-~dg~i~vwd~ 683 (882)
+...+|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++|+ ..|.|.||--
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 45678999999999999989999999998888888754333 55554 7999988666665 6778888754
No 153
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.1e-19 Score=184.94 Aligned_cols=575 Identities=12% Similarity=0.085 Sum_probs=334.8
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCC------------CEEEEeecCCCCeEEE
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDG------------RYVAAGESGPQPAVLV 72 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg------------~~la~g~~~~d~~I~v 72 (882)
.+-++|. |.++|.+++.|.|.|..+.+.+..++.|. ..|+.+.|.|-. -+||++ +..|.|.+
T Consensus 20 A~Dw~~~--GLiAygshslV~VVDs~s~q~iqsie~h~--s~V~~VrWap~~~p~~llS~~~~~lliAsa--D~~GrIil 93 (1062)
T KOG1912|consen 20 AADWSPS--GLIAYGSHSLVSVVDSRSLQLIQSIELHQ--SAVTSVRWAPAPSPRDLLSPSSSQLLIASA--DISGRIIL 93 (1062)
T ss_pred ccccCcc--ceEEEecCceEEEEehhhhhhhhccccCc--cceeEEEeccCCCchhccCccccceeEEec--cccCcEEE
Confidence 3455565 57999999999999999999999998888 899999998631 256777 66899999
Q ss_pred EECCCceeeEEeeccccceeEEEECC---CC-CEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEcc-CCCEE
Q 047837 73 WDCANLAFISELKGHLYGVECIAFSP---DG-EHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS-DAKFI 145 (882)
Q Consensus 73 wd~~t~~~~~~l~~h~~~V~~lafsp---dg-~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~-d~~~l 145 (882)
||...+..+..|..|..+|..++|-+ +. ..|++.. .++.+|+..+|++..+..... ....++.|.| |.+.+
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--EILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--cceeeeeeCCCCcceE
Confidence 99999999999999999999999976 44 3455544 999999999999999888764 6677799999 76666
Q ss_pred EEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCc
Q 047837 146 VTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAG 224 (882)
Q Consensus 146 ~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 224 (882)
...+. |.+-+-+.-.... . ...++.-.+......-.... . ........... ..
T Consensus 172 ~~l~s~g~vl~~~~l~~se--p-------~~pgk~~qI~sd~Sdl~~le-------r-e~at~ns~ts~---------~~ 225 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSE--P-------DVPGKEFQITSDHSDLAHLE-------R-ETATGNSTTST---------PA 225 (1062)
T ss_pred EEEccCceEEEEeccCCCC--C-------CCCceeEEEecCccchhhhh-------h-hhhccccccCC---------Cc
Confidence 66554 6666555432221 0 00001000000000000000 0 00000000000 00
Q ss_pred eEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhcccc
Q 047837 225 ILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYF 304 (882)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (882)
..+ ...-...++|+|.-+.++-......+.++|++-..++..+..+.
T Consensus 226 sa~------------fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier--------------------- 272 (1062)
T KOG1912|consen 226 SAY------------FITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER--------------------- 272 (1062)
T ss_pred chh------------HHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc---------------------
Confidence 000 00001346889987777777778899999999877776654221
Q ss_pred ccCCCCCCcEEEeecCCCe---EEEEeCCceEEEEEccccccccee------eeeecCcceeeeecccCCCCCCCCCcce
Q 047837 305 KLTPTIPNAIACQFSTSEK---LVVVYGDHSLYVWDIHDVNEATRC------CVLVSHSACIWDIKNLGCENMHDPSVSC 375 (882)
Q Consensus 305 ~~~~~~~~~~~~~~s~~~~---ll~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~v~~i~~~~~~~~h~~~v~~ 375 (882)
+.+--+.+-|+.+ +.+.-.||.+.+|-.......... ..+......+..++ +..+..
T Consensus 273 ------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--------~~rp~~ 338 (1062)
T KOG1912|consen 273 ------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--------EFRPVI 338 (1062)
T ss_pred ------CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--------hcccce
Confidence 1111355666653 666677999999976542211110 01111111222111 111222
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCC
Q 047837 376 VARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRG 455 (882)
Q Consensus 376 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 455 (882)
.+..|.....++.--.+|.+.+|.+.+++.......+...+.....-... ...-.....+.+|.||
T Consensus 339 ~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~--------------~~~v~k~~l~~LS~dg 404 (1062)
T KOG1912|consen 339 GASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLS--------------TKLVGKTSLISLSDDG 404 (1062)
T ss_pred eecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCc--------------eeehhhccccchhhcC
Confidence 22222335555555668889999998765433222111111000000000 0001112334445555
Q ss_pred CEEEeeeccceEEEEEEecCCCCCc-----cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc
Q 047837 456 STLLLDAHDAEILSLSFSLSSKKDD-----VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC 530 (882)
Q Consensus 456 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~ 530 (882)
+|.....+....|-.+... .......--.++|.|...|+|.++|+.++ ...+.+..|+..|.++.|-.
T Consensus 405 ------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~VkgleW~g 477 (1062)
T KOG1912|consen 405 ------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGLEWLG 477 (1062)
T ss_pred ------CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeeeeecc
Confidence 4555555555444322100 00001111237899999999999999987 67778888999999999976
Q ss_pred CCCEEEEEe---------CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc
Q 047837 531 NGRKILSCS---------ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 531 ~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~ 601 (882)
..+++-.+. --+.+.+-|++++.... ++. .......+|..+..+..++||+..-.|.-+.+||+++..
T Consensus 478 ~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~--fR~-l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 478 NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR--FRG-LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred ceeEEEeeeccccccccceeeeEEEEEcccccccc--ccc-CCCCCcCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 554443221 12457788888664321 111 122334699999999999999999999999999998877
Q ss_pred eEEEEEeccCCCCcEEEEEC-CCCC----------------EEEEEeCCCcEEEEEcc-------CCeEE-EEEccCCCC
Q 047837 602 LIRSFKQAKDFGDPMKVTVD-PSGS----------------YLVCSYSNKSICLYDFI-------SGEMV-AKAMGHGEV 656 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~s-pdg~----------------~l~~~~~dg~i~iwd~~-------~~~~~-~~~~~h~~~ 656 (882)
+++... ..---++.+.|+ |.-. ..+..+. ..+++.+. .|... ...+.....
T Consensus 555 ~lr~mS--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~--es~~~~~~~~a~~~sdgsq~~~a~esfafa 630 (1062)
T KOG1912|consen 555 MLRLMS--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSV--ESRIYHITLSALVVSDGSQVNTAWESFAFA 630 (1062)
T ss_pred HHHHHh--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccc--cchheehhhhhhhhccccchhhHHHHHHHH
Confidence 766554 222337888887 3322 2222221 22333321 11111 111111223
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 657 ITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 657 v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
+..|+| .+..|+.|..+|.+.+||+...+...
T Consensus 631 l~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg 662 (1062)
T KOG1912|consen 631 LCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG 662 (1062)
T ss_pred HHhhhc--cCCeeEeecccCceeEEecccccccC
Confidence 344667 46689999999999999987655444
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=3.3e-20 Score=176.57 Aligned_cols=212 Identities=16% Similarity=0.211 Sum_probs=169.4
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC---------------CceeEEEeecCCCCEEEE
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR---------------NFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~---------------~~~~~~~~~~h~~~v~~~ 526 (882)
.|.+.++.+...+-++ ..+.++-+..|.|+||++.. ..+++.++.+|...=..+
T Consensus 149 ~h~g~~NRvr~~~~~~-----------~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L 217 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGN-----------EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGL 217 (440)
T ss_pred ccccccceeeecccCC-----------cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceee
Confidence 5677777776666543 12677778899999999863 235677888999999999
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEE
Q 047837 527 KFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIR 604 (882)
Q Consensus 527 ~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~ 604 (882)
+||| ..-.|++|.--+.|++|...++ ..... .....+|...|..++|||.. ..|++|+-||+|+|||++.+....
T Consensus 218 dWSp~~~g~LlsGDc~~~I~lw~~~~g--~W~vd-~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 218 DWSPIKTGRLLSGDCVKGIHLWEPSTG--SWKVD-QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred ecccccccccccCccccceEeeeeccC--ceeec-CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence 9999 2235778877788999998863 22222 23345577899999999965 488999999999999999984433
Q ss_pred EEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC---CeEEEEEccCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 047837 605 SFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS---GEMVAKAMGHGEVITGVTFLPD-CKHIVSVGGDGLQRV 680 (882)
Q Consensus 605 ~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~i~v 680 (882)
.+....|.+.|+.|.|+.+-.+||+|++||+++|||++. ++++..++-|..+|+++.|+|. ...|+++|.|..|.+
T Consensus 295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 333358999999999999888999999999999999975 6889999999999999999985 457888889999999
Q ss_pred EeCCCCC
Q 047837 681 KEKYGIL 687 (882)
Q Consensus 681 wd~~~~~ 687 (882)
||+.-..
T Consensus 375 WDlsvE~ 381 (440)
T KOG0302|consen 375 WDLSVEA 381 (440)
T ss_pred EEeeccC
Confidence 9997443
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1e-18 Score=177.72 Aligned_cols=450 Identities=13% Similarity=0.174 Sum_probs=255.3
Q ss_pred EEEcC---CCCEEEEeecCCCCeEEEEECCCcee------eEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcc
Q 047837 50 VAMSR---DGRYVAAGESGPQPAVLVWDCANLAF------ISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSA 118 (882)
Q Consensus 50 va~sp---dg~~la~g~~~~d~~I~vwd~~t~~~------~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g 118 (882)
..|++ ....||++ +++|.|.++|...... ++....|.+.|..+.|-|-...|++++ .++++||+++.
T Consensus 55 ~sFs~~~n~eHiLava--dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVA--DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEe--cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 44553 35678998 5699999999875432 244557999999999999555677766 89999999999
Q ss_pred eeeee--eecCCcccceeEEEEccC-CCEEEEECC-CcEEEEEcccCccceeccccCccceeecCc---cccccccccce
Q 047837 119 MLVMK--LKANSSCSAITSACFSSD-AKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAK---PVNLGIQKESY 191 (882)
Q Consensus 119 ~~~~~--~~~~~~~~~v~~l~fs~d-~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~ 191 (882)
+++.. +.+|. +.|.+++|.|+ ...|++++. |.|.|||+.-........+. ......|.. +..........
T Consensus 133 ~l~G~~~~~GH~--~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~-~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 133 RLVGGRLNLGHT--GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD-NRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred eeecceeecccc--cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh-hhhhccccCCCCCCchhhccccc
Confidence 99887 66666 99999999995 557777775 89999999754420000000 000001111 11000000000
Q ss_pred EEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeee---eEEEecCCCEEEEEec-CCeEEe
Q 047837 192 FVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKN---GFALSASSKLIACACS-NGAVHL 267 (882)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~---~~~~s~d~~~l~~~~~-dg~I~v 267 (882)
...+...+. .+.+..|...||+++. |+.|+|
T Consensus 210 ---------------------------------------------~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 210 ---------------------------------------------WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV 244 (720)
T ss_pred ---------------------------------------------cccccCceeeeeEEEEEeccceeeeccCCCcceEE
Confidence 000011112 2566778888999887 999999
Q ss_pred eecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEccccccccee
Q 047837 268 FDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRC 347 (882)
Q Consensus 268 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~ 347 (882)
||+..........-.....+..+
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~--------------------------------------------------------- 267 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTH--------------------------------------------------------- 267 (720)
T ss_pred EeecccccccccCCCcccCccCc---------------------------------------------------------
Confidence 99987654433221000000000
Q ss_pred eeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceE
Q 047837 348 CVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLV 427 (882)
Q Consensus 348 ~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (882)
......+.++... ..|.+|...+.|+.|..|++.+..........
T Consensus 268 -------------------skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--------------- 312 (720)
T KOG0321|consen 268 -------------------SKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--------------- 312 (720)
T ss_pred -------------------ccceeeeEEEEec-CCCCeEEEEecCCcEEEEeccccCcCchhhcc---------------
Confidence 0001223333333 34555555555888888887754321110000
Q ss_pred eeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc-ceE-EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEE
Q 047837 428 SAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD-AEI-LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYD 505 (882)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~v-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd 505 (882)
++. ... ..-..+|++. ++++|+.|...++|.
T Consensus 313 ----------------------------------g~~~~sf~vks~lSpd~~-------------~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 313 ----------------------------------GKLNSSFYVKSELSPDDC-------------SLLSGSSDEQAYIWV 345 (720)
T ss_pred ----------------------------------CcccceeeeeeecCCCCc-------------eEeccCCCcceeeee
Confidence 000 000 0112344444 899999999999999
Q ss_pred cCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccce--------ecccCCceEEEEE
Q 047837 506 VKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQ--------QLASQGTVYDMDI 576 (882)
Q Consensus 506 ~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~ 576 (882)
+.+.......+.+|.-.|++++|.| .-.-+++++.|..+++|++..+-.......... ..+|...+..+.+
T Consensus 346 vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~s 425 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNS 425 (720)
T ss_pred ecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccc
Confidence 9987777888999999999999998 345677889999999999964422211111000 0000011111111
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC----CCcEEEEEccCCeEEEE--E
Q 047837 577 DPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS----NKSICLYDFISGEMVAK--A 650 (882)
Q Consensus 577 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----dg~i~iwd~~~~~~~~~--~ 650 (882)
+-.+.+..- ..+.. ........++..|++.-...+.. .-.|...+....+.... -
T Consensus 426 s~~~t~~~p--R~~~~-----------------r~~ssP~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s 486 (720)
T KOG0321|consen 426 SLRKTYKDP--REGMN-----------------RISSSPVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGS 486 (720)
T ss_pred cccccccch--hhhcc-----------------ccccCccchhcCcCCcccccCCCcccccccceecchhccCccccccc
Confidence 110000000 00111 12233445566666655444322 11344455443333322 2
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCCCCcccCCCCCcccEEEecCC
Q 047837 651 MGHGEVITGVTFLPDCKHIVSVGG-----------DGLQRVKEKYGILPPRNFAQPAALSPIIFCEEE 707 (882)
Q Consensus 651 ~~h~~~v~~l~~s~d~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~ 707 (882)
.+|...|....+++.+..+++.+- ++.++.|......+...........+++|++..
T Consensus 487 ~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar~~~r~ifs~~~ 554 (720)
T KOG0321|consen 487 GGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREARKKSRLIFSPGS 554 (720)
T ss_pred cccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhcccccccceeccCcc
Confidence 247778888888888888888887 889999987765555444443355566666653
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-19 Score=177.64 Aligned_cols=293 Identities=16% Similarity=0.250 Sum_probs=211.5
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc--e--eeEEeeccccc
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL--A--FISELKGHLYG 90 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~--~--~~~~l~~h~~~ 90 (882)
..+...|..+++||....+..-.+..|..+-.+..+.|+.... |++++.++|..|++|.-... + .+..+.|. .
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~ 81 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--N 81 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--h
Confidence 3445557799999998877776666776656799999987764 77777788999999975422 2 22333443 3
Q ss_pred eeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceec
Q 047837 91 VECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTR 167 (882)
Q Consensus 91 V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~ 167 (882)
-.|++......|+++++ +.|+|||++...+.+.++.|. ..|+++.++-...+||++++ |.|.|..+.++.. .
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--t- 156 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--T- 156 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEeccCCcEEEEecccCcc--c-
Confidence 34555555559999999 999999999888888888887 89999999999999999998 6798888877654 0
Q ss_pred cccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeE
Q 047837 168 LNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGF 247 (882)
Q Consensus 168 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 247 (882)
..+... +| ..++-+
T Consensus 157 -----t~f~~~--------------------------------------------sg-----------------qsvRll 170 (673)
T KOG4378|consen 157 -----TTFTID--------------------------------------------SG-----------------QSVRLL 170 (673)
T ss_pred -----cceecC--------------------------------------------CC-----------------CeEEEe
Confidence 000000 00 011345
Q ss_pred EEecCCC-EEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEE
Q 047837 248 ALSASSK-LIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVV 326 (882)
Q Consensus 248 ~~s~d~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~ 326 (882)
.|+|..+ +|.+++.+|.|.+||+.....+..
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~------------------------------------------------ 202 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH------------------------------------------------ 202 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccc------------------------------------------------
Confidence 5566544 344555666666666553211100
Q ss_pred EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCcee
Q 047837 327 VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSEL 406 (882)
Q Consensus 327 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~ 406 (882)
....|..+...++|+|.+..+|++.+.|..|.+||....+..
T Consensus 203 --------------------------------------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 203 --------------------------------------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred --------------------------------------hhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 013478888889999888999999999999999999865543
Q ss_pred eecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceecc
Q 047837 407 SKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVT 486 (882)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 486 (882)
... ....+...++|.++|.
T Consensus 245 ~~l----------------------------------------------------~y~~Plstvaf~~~G~--------- 263 (673)
T KOG4378|consen 245 DRL----------------------------------------------------TYSHPLSTVAFSECGT--------- 263 (673)
T ss_pred cee----------------------------------------------------eecCCcceeeecCCce---------
Confidence 211 2234556677777776
Q ss_pred CCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCC
Q 047837 487 DSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNG 532 (882)
Q Consensus 487 ~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 532 (882)
+|+.|...|.|..||++....++..+..|...|++++|-|..
T Consensus 264 ----~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 ----YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ----EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 899999999999999999888999999999999999998764
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.6e-19 Score=164.39 Aligned_cols=279 Identities=14% Similarity=0.219 Sum_probs=192.4
Q ss_pred CCcEEEeecCCCe-EEEEeCCceEEEEEcccccccce-eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 311 PNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATR-CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 311 ~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
.-+.++.|.+-|+ +++++.|++++|||.......-. ....+.|.+.|+.+.|.. |.-|+.+|+
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh---------------PEfGqvvA~ 78 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH---------------PEFGQVVAT 78 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC---------------ccccceEEE
Confidence 3456899999986 56677799999999754433222 235667777777777642 356899999
Q ss_pred eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 389 CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
++.|+++.+|.-......... . .-+ +...+......|+
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~---~------------------------------~Wv---------~~ttl~DsrssV~ 116 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHG---R------------------------------RWV---------RRTTLVDSRSSVT 116 (361)
T ss_pred EecCCceeeeeeccccccccc---c------------------------------eeE---------EEEEeecCCccee
Confidence 999999999986422211000 0 000 1123445667899
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC-----ceeEEEee-------cCCCCEEEEEEcc---CCC
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN-----FDLIESID-------DHSAAVTAVKFTC---NGR 533 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~-----~~~~~~~~-------~h~~~v~~~~~s~---~~~ 533 (882)
.+.|.|... |-.||+++.||.++||+.... +.+...++ .+..+..|+.|+| ...
T Consensus 117 DV~FaP~hl-----------GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 117 DVKFAPKHL-----------GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEP 185 (361)
T ss_pred EEEecchhc-----------ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCc
Confidence 999998754 448999999999999997652 22233333 4667788999987 356
Q ss_pred EEEEEeCC-----CeEEEEeCccCccceeeeccceecccCCceEEEEEecC----CCEEEEEeCCCcEEEEEccCC----
Q 047837 534 KILSCSAD-----RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT----MEVVITVGQDKKINSFSIAAG---- 600 (882)
Q Consensus 534 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~~d~~v~iwd~~~~---- 600 (882)
+||.|+.+ +.++||....... +.........+..+|++++|.|+ ..+||+++.|| |+||.++..
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~r--Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i 262 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGR--KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI 262 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcc--eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence 78888766 4799998775442 23333344477899999999995 35799999999 999998731
Q ss_pred ----------------ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC---CeEEEEEccCCCCeEEEE
Q 047837 601 ----------------KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS---GEMVAKAMGHGEVITGVT 661 (882)
Q Consensus 601 ----------------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~ 661 (882)
+.+..+. .|.+.|..+.|+-.|..|++.+.||.||+|...- .++...+.. .+.+....
T Consensus 263 ~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~-e~~~~~~~ 339 (361)
T KOG2445|consen 263 EEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA-EGSVTKPD 339 (361)
T ss_pred hhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec-cCCCCCcc
Confidence 1223333 8999999999999999999999999999998642 344444442 23344444
Q ss_pred EC
Q 047837 662 FL 663 (882)
Q Consensus 662 ~s 663 (882)
|+
T Consensus 340 ~~ 341 (361)
T KOG2445|consen 340 FS 341 (361)
T ss_pred cc
Confidence 43
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.4e-19 Score=172.30 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=164.2
Q ss_pred eeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEE
Q 047837 460 LDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSC 538 (882)
Q Consensus 460 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~ 538 (882)
..+|...|..+.|+...+ +.||+|+.|.+|++||+.++ ++..++..|...|.++.|+| ...+|++|
T Consensus 239 ~~gHTdavl~Ls~n~~~~------------nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG 305 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFR------------NVLASGSADKTVKLWDVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSG 305 (463)
T ss_pred cccchHHHHHHHhccccc------------eeEEecCCCceEEEEEcCCC-CcceehhhcCCceeEEEecCCCceEEEec
Confidence 347888899999988765 48999999999999999998 78888889999999999999 57789999
Q ss_pred eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcE
Q 047837 539 SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPM 616 (882)
Q Consensus 539 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~ 616 (882)
+.|+++.+.|.+...... ..+.-.+.|-.++|.|... .++++..||+|+-+|++.. +++.+++ .|.++|.
T Consensus 306 s~D~~V~l~D~R~~~~s~------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~--AHd~~IS 377 (463)
T KOG0270|consen 306 SYDGTVALKDCRDPSNSG------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK--AHDDEIS 377 (463)
T ss_pred cccceEEeeeccCccccC------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE--eccCCcc
Confidence 999999999998422221 1222336899999999765 5677778999999999974 8999998 9999999
Q ss_pred EEEECCCC-CEEEEEeCCCcEEEEEccCCeE--EEEEccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCCCC
Q 047837 617 KVTVDPSG-SYLVCSYSNKSICLYDFISGEM--VAKAMGHGEVITGVTFLPDCK-HIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 617 ~~~~spdg-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
++++++.- .+|++++.|+.|++|++..-.. +..-.-.-+...|+++.|+-. +|+.|+..+.++|||+.+....
T Consensus 378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999854 5788999999999999875432 221111123455667777654 5666777778999999775544
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.3e-16 Score=175.31 Aligned_cols=372 Identities=27% Similarity=0.474 Sum_probs=265.2
Q ss_pred EeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcce-eeeeeecCCcccceeEEEE-ccCCC-EEEEEC--CCcEEE
Q 047837 83 ELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAM-LVMKLKANSSCSAITSACF-SSDAK-FIVTAG--KKHLKF 155 (882)
Q Consensus 83 ~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~-~~~~~~~~~~~~~v~~l~f-s~d~~-~l~~~~--~~~i~i 155 (882)
.+..|...+..+.|.+++..++.++ +.+.+|+...+. .+..+..... ..+..+.+ ++++. .++..+ ++.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECCCcceEEeccCCCCccEEE
Confidence 4567999999999999999999887 999999999887 6666665431 36777777 88887 444433 468999
Q ss_pred EEccc-CccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCce
Q 047837 156 WTIGS-SATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLS 234 (882)
Q Consensus 156 wd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~ 234 (882)
|+... ... ...+..|
T Consensus 139 ~~~~~~~~~--------~~~~~~~-------------------------------------------------------- 154 (466)
T COG2319 139 WDLSTPGKL--------IRTLEGH-------------------------------------------------------- 154 (466)
T ss_pred EEecCCCeE--------EEEEecC--------------------------------------------------------
Confidence 99875 221 1111112
Q ss_pred eeeEeeceeeeeEEEecCCCEEEEEec-CCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCc
Q 047837 235 VTKSVDLKVKNGFALSASSKLIACACS-NGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNA 313 (882)
Q Consensus 235 ~~~~~~~~~~~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (882)
...+..++|+|++..++.++. ++.+++|+...+..+..
T Consensus 155 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 193 (466)
T COG2319 155 ------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----------------------------------- 193 (466)
T ss_pred ------cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe-----------------------------------
Confidence 222367889999988888875 88888888775222111
Q ss_pred EEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc-EEEEeeCC
Q 047837 314 IACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV-SFSTCSAD 392 (882)
Q Consensus 314 ~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~-~l~t~~~d 392 (882)
+. .|...|.+++|+ +++. .+++++.|
T Consensus 194 ------------------------------------~~----------------~~~~~v~~~~~~-~~~~~~~~~~~~d 220 (466)
T COG2319 194 ------------------------------------LA----------------GHTDPVSSLAFS-PDGGLLIASGSSD 220 (466)
T ss_pred ------------------------------------ec----------------cCCCceEEEEEc-CCcceEEEEecCC
Confidence 11 145556666666 6665 55555889
Q ss_pred CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE
Q 047837 393 GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF 472 (882)
Q Consensus 393 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~ 472 (882)
+.|++||...+..... .+..|.... ...|
T Consensus 221 ~~i~~wd~~~~~~~~~--------------------------------------------------~~~~~~~~~-~~~~ 249 (466)
T COG2319 221 GTIRLWDLSTGKLLRS--------------------------------------------------TLSGHSDSV-VSSF 249 (466)
T ss_pred CcEEEEECCCCcEEee--------------------------------------------------ecCCCCcce-eEeE
Confidence 9999997764333210 123344443 2266
Q ss_pred ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccC
Q 047837 473 SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVET 552 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~ 552 (882)
++++. ++++++.|+.+++|+..........+..|...|.++.|+|++..+++++.|+.+.+|+....
T Consensus 250 ~~~~~-------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 250 SPDGS-------------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred CCCCC-------------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 77665 78899999999999998764434444778999999999998889998998988999988765
Q ss_pred ccceeeeccceecccCCceEEEEEecCCCEEEEE-eCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEE-E
Q 047837 553 NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV-GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVC-S 630 (882)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~ 630 (882)
....... ...|...+..+.|.+++..++.+ ..|+.+.+|++.......... ....+..+.+++ ...+.. +
T Consensus 317 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~ 388 (466)
T COG2319 317 KLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE---GHSNVLSVSFSP-DGRVVSSG 388 (466)
T ss_pred ceEEEee----ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEec---CCceEEEEEECC-CCCEEEEe
Confidence 5444433 22334568899994332556555 688899999999877322222 222288999998 544444 6
Q ss_pred eCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 631 YSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 631 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
..++.+.+|+............+...+....+++++..+++++.++.+++|++..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 8899999999999888777765447899999999999999999999999999988
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=8.1e-16 Score=170.84 Aligned_cols=369 Identities=28% Similarity=0.508 Sum_probs=265.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-eeEEeecccc-ceeEEEE-CCCCC-EEEEEc---CE
Q 047837 37 LMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA-FISELKGHLY-GVECIAF-SPDGE-HLVTVG---GY 109 (882)
Q Consensus 37 ~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~-~~~~l~~h~~-~V~~laf-spdg~-~Las~~---~~ 109 (882)
.+..|. ..|.++.+.+++..++.+. .++.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+ +.
T Consensus 60 ~~~~~~--~~i~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 60 LLRGHE--DSITSIAFSPDGELLLSGS--SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eeeecc--ceEEEEEECCCCcEEEEec--CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 445677 8999999999999999985 48899999999887 7777777443 7888888 88888 444433 89
Q ss_pred EEEEEcCc-ceeeeeeecCCcccceeEEEEccCCCEEEEEC--CCcEEEEEcccCccceeccccCccceeecCccccccc
Q 047837 110 IYLWNWRS-AMLVMKLKANSSCSAITSACFSSDAKFIVTAG--KKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGI 186 (882)
Q Consensus 110 i~iWd~~~-g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 186 (882)
+.+||... ......+..|. ..|..++|+|+++.++.++ ++.+++|++..+.. ...+..|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~------- 198 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--------LSTLAGHT------- 198 (466)
T ss_pred EEEEEecCCCeEEEEEecCc--ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--------EEeeccCC-------
Confidence 99999998 78888888887 8999999999999888886 58899999876332 11111122
Q ss_pred cccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCC-EEEEEecCCeE
Q 047837 187 QKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSK-LIACACSNGAV 265 (882)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~dg~I 265 (882)
..+.+++|+|++. .+++++.|+.|
T Consensus 199 -------------------------------------------------------~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 199 -------------------------------------------------------DPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred -------------------------------------------------------CceEEEEEcCCcceEEEEecCCCcE
Confidence 2237788888887 44444888888
Q ss_pred EeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccc
Q 047837 266 HLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~ 345 (882)
++||...+.....
T Consensus 224 ~~wd~~~~~~~~~------------------------------------------------------------------- 236 (466)
T COG2319 224 RLWDLSTGKLLRS------------------------------------------------------------------- 236 (466)
T ss_pred EEEECCCCcEEee-------------------------------------------------------------------
Confidence 8886553322210
Q ss_pred eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcc
Q 047837 346 RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH 425 (882)
Q Consensus 346 ~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (882)
.+.+|. ..+ ...|+ +++..+++++.|+.+++|+.......
T Consensus 237 ---~~~~~~----------------~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~------------------- 276 (466)
T COG2319 237 ---TLSGHS----------------DSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSL------------------- 276 (466)
T ss_pred ---ecCCCC----------------cce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcE-------------------
Confidence 011111 111 11333 55677888999999999998765420
Q ss_pred eEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEE
Q 047837 426 LVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYD 505 (882)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd 505 (882)
......|...+.++.|.|++. .+++++.|+.+.+|+
T Consensus 277 -------------------------------~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~d~~~~~~~ 312 (466)
T COG2319 277 -------------------------------LRTLSGHSSSVLSVAFSPDGK-------------LLASGSSDGTVRLWD 312 (466)
T ss_pred -------------------------------EEEEecCCccEEEEEECCCCC-------------EEEEeeCCCcEEEEE
Confidence 001135678888889998665 677788888899998
Q ss_pred cCCCceeEEEe--ecCCCCEEEEEEccCCCEEEEE-eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCE
Q 047837 506 VKRNFDLIESI--DDHSAAVTAVKFTCNGRKILSC-SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEV 582 (882)
Q Consensus 506 ~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 582 (882)
.... ...... ..|...+..+.|.+++..++.+ ..|+.+.+|++.... ........ ..+..+.+.+ ...
T Consensus 313 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~-~~~ 383 (466)
T COG2319 313 LETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGH------SNVLSVSFSP-DGR 383 (466)
T ss_pred cCCC-ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCC------ceEEEEEECC-CCC
Confidence 8775 333333 3788889999994333566655 678899999998665 11111111 1278889988 544
Q ss_pred EEE-EeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 583 VIT-VGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 583 l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
+.. +..++.+.+|+........... .+...+....+++++.+++.++.++.+++|+..+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 384 VVSSGSTDGTVRLWDLSTGSLLRNLD--GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEecCCCceEEEecccCeeeeecc--CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 444 6888999999999888877765 2227899999999999999999999999999988
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=4e-19 Score=170.18 Aligned_cols=292 Identities=16% Similarity=0.231 Sum_probs=220.6
Q ss_pred EEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC------ceeEEEeecCCCCEEEEEEcc-
Q 047837 458 LLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN------FDLIESIDDHSAAVTAVKFTC- 530 (882)
Q Consensus 458 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~------~~~~~~~~~h~~~v~~~~~s~- 530 (882)
-.+.+|.++|..++|+|... +.||+|++|.+|.||++..+ .+++..+.+|...|.-++|+|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD------------~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFND------------CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred CCccCccccccccccCccCC------------ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc
Confidence 35679999999999999876 38999999999999998763 245778999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc
Q 047837 531 NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610 (882)
Q Consensus 531 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 610 (882)
..+.|++++.|.+|.+|++.+++....+. |.+.|+++.|+.||.+|++.+.|++|||||.++++.+..-. +
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali~l~-------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~--~ 213 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALITLD-------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV--A 213 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceeeecC-------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc--c
Confidence 56788999999999999999988776643 55899999999999999999999999999999999998875 4
Q ss_pred CCC-CcEEEEECCCCCEEEEEe---CCCcEEEEEccCCe---EEEEEccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEe
Q 047837 611 DFG-DPMKVTVDPSGSYLVCSY---SNKSICLYDFISGE---MVAKAMGHGEVITGVTFLPDCKHIVSVG-GDGLQRVKE 682 (882)
Q Consensus 611 ~~~-~v~~~~~spdg~~l~~~~---~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd 682 (882)
|.+ ....+.|-.+|.++.+|. .+.++-+||..+-+ .+.++. .+..|.---|.+|..++..+| .|+.||.|+
T Consensus 214 heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 214 HEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 543 456777888898666653 47899999976532 344554 456677777899999887776 899999999
Q ss_pred CCCCCCC----cccCCCCCcccEEEecCCCeEEEecccccccccCcCcCCCccccceecCCceeeEEEecCCchhhhhcc
Q 047837 683 KYGILPP----RNFAQPAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQIGPHLHYHGVKPHLTSAFKFSISRLPKWAQKK 758 (882)
Q Consensus 683 ~~~~~~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 758 (882)
+....+. .+|....+...+.|-|-.. +.. ..-.=..+|+.+.. .+..++|.++|....|+.+
T Consensus 293 it~d~P~~hyln~f~S~epQRG~g~mPKRG---------l~V----s~cEI~rfyKl~~~-~~epIsm~VPRkSdlFQeD 358 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFSSKEPQRGMGFMPKRG---------LDV----SKCEIARFYKLHER-KCEPISMTVPRKSDLFQED 358 (472)
T ss_pred ecCCCceeEEecccccCCcccccccccccc---------ccc----hHHHHHHHHHhhcc-eeeeEEEeccccchhhhhc
Confidence 9876643 3333344444444444331 110 00000123444444 5667889999998888888
Q ss_pred ccccccccCCcccccccccccccCCCcc
Q 047837 759 VTDSEIVPGNLDFSLSQEVEKKSLSPFV 786 (882)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 786 (882)
-...+.. ..+.+.+.+..+.|...|+-
T Consensus 359 lYPdt~~-~~paLtAEEW~sGkda~Pil 385 (472)
T KOG0303|consen 359 LYPDTPG-PEPALTAEEWLSGKDADPIL 385 (472)
T ss_pred cCCCCCC-CCccccHHHhhcCCCCCCeE
Confidence 7765543 34788888888888888865
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=7.6e-19 Score=167.40 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=186.2
Q ss_pred CCCCcceeeeccC-CCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 369 HDPSVSCVARGCT-GGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 369 h~~~v~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
|.+.+..+...+- +..+.++-+..|.|+||++...-.... ..-.
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~-----------------------------------~~~~ 194 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS-----------------------------------EPGL 194 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc-----------------------------------Cccc
Confidence 4444444444322 455667778899999999874321100 0001
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee--EEEeecCCCCEEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL--IESIDDHSAAVTA 525 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~--~~~~~~h~~~v~~ 525 (882)
.+..+....+..+.+|.+.=..++|+|... ..|++|..-+.|++|...++.-. ...+.+|+..|-.
T Consensus 195 ~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~------------g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 195 EVKDSEFRPLFTFNGHKGEGYGLDWSPIKT------------GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVED 262 (440)
T ss_pred cccccccCceEEecccCccceeeecccccc------------cccccCccccceEeeeeccCceeecCccccccccchhh
Confidence 111233445567788999999999999543 15889988899999998875322 2456679999999
Q ss_pred EEEccC-CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC---Cc
Q 047837 526 VKFTCN-GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA---GK 601 (882)
Q Consensus 526 ~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~---~~ 601 (882)
++|||. ...|++|+-||+|+|||++.+.....+.. .+|.+.|+-+.|+.+..+||+|+.||+++|||++. ++
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~----kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST----KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeEe----eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC
Confidence 999994 56889999999999999998754444432 35568999999999988999999999999999975 56
Q ss_pred eEEEEEeccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEEccCCe-----------EEE-----EEccC--CCCeEEEEE
Q 047837 602 LIRSFKQAKDFGDPMKVTVDP-SGSYLVCSYSNKSICLYDFISGE-----------MVA-----KAMGH--GEVITGVTF 662 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~~-----------~~~-----~~~~h--~~~v~~l~~ 662 (882)
.+..|+ .|..+|+++.|+| +...|++++.|.+|.|||+..-. -+. -+.-| ...|..|.|
T Consensus 339 pVA~fk--~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhW 416 (440)
T KOG0302|consen 339 PVATFK--YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHW 416 (440)
T ss_pred cceeEE--eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhhee
Confidence 788888 8999999999999 45678888899999999984210 000 11124 346888999
Q ss_pred CCC-CCEEEEEeCCCe
Q 047837 663 LPD-CKHIVSVGGDGL 677 (882)
Q Consensus 663 s~d-~~~l~s~~~dg~ 677 (882)
++. ..+|++.+.||.
T Consensus 417 H~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 417 HRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccCCCCeEEEecccce
Confidence 875 348888888884
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=5.9e-19 Score=172.50 Aligned_cols=264 Identities=18% Similarity=0.233 Sum_probs=201.1
Q ss_pred CCCCCcceeeeccCCC-cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 368 MHDPSVSCVARGCTGG-VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+...|++++|+|... +++++|..-|.|-+||+.+.+..
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------------------- 223 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------------------- 223 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------------------------------------
Confidence 3677888888886666 78889999999999999743321
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCCEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAAVTA 525 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~ 525 (882)
.........|.++|.++.|+|... ..+++.+.||+|++-|+.... +.+..+..-...+.+
T Consensus 224 -------~d~v~~f~~hs~~Vs~l~F~P~n~------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~ 284 (498)
T KOG4328|consen 224 -------KDGVYLFTPHSGPVSGLKFSPANT------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSS 284 (498)
T ss_pred -------cCceEEeccCCccccceEecCCCh------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeee
Confidence 122445678999999999999876 379999999999999998741 223333334556788
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEEccCCceEE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFSIAAGKLIR 604 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~ 604 (882)
+.|+.+...++.+..=|...+||.++.+......+.|. ..|..++++|-.. +||+++.|++++|||++.-....
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-----kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-----KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-----cccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 89998888888888778999999998877555544444 5899999999654 78999999999999998633222
Q ss_pred --EEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc----CCeEEEEEccCCC------CeEEEEECCCCCEEEEE
Q 047837 605 --SFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI----SGEMVAKAMGHGE------VITGVTFLPDCKHIVSV 672 (882)
Q Consensus 605 --~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~----~~~~~~~~~~h~~------~v~~l~~s~d~~~l~s~ 672 (882)
.+..-.|...|.++.|||++-.|++.+.|..|+|||.. .-+++..+. |.. ......|.||..+++++
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg 438 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVG 438 (498)
T ss_pred CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEe
Confidence 23333799999999999988779999999999999983 333444443 321 23345799999999999
Q ss_pred eCCCeEEEEeCCCCCCCcccCCCC
Q 047837 673 GGDGLQRVKEKYGILPPRNFAQPA 696 (882)
Q Consensus 673 ~~dg~i~vwd~~~~~~~~~~~~~~ 696 (882)
-.-..|-|+|-.+++....+..+.
T Consensus 439 ~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 439 RYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred ccCcceeEEcCCCCEEeeeccCcc
Confidence 988889999998888666654443
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7.1e-20 Score=199.34 Aligned_cols=255 Identities=16% Similarity=0.197 Sum_probs=196.5
Q ss_pred CCCcceeeeccCCCc---EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 370 DPSVSCVARGCTGGV---SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
+...+.++|.+.... +|+.|..||.|.+||...-..-..
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~-------------------------------------- 105 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANAS-------------------------------------- 105 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcc--------------------------------------
Confidence 345566777633222 489999999999999875200000
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE-eecCCCCEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES-IDDHSAAVTA 525 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~~h~~~v~~ 525 (882)
...+.....|.+.|..+.|++... ++||+|+.||.|.|||+......... -....+.|.+
T Consensus 106 -------~~~la~~~~h~G~V~gLDfN~~q~------------nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 106 -------EEVLATKSKHTGPVLGLDFNPFQG------------NLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred -------hHHHhhhcccCCceeeeeccccCC------------ceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 000112457999999999999876 48999999999999999874222221 1224678999
Q ss_pred EEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCC---cEEEEEccCC
Q 047837 526 VKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDK---KINSFSIAAG 600 (882)
Q Consensus 526 ~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~---~v~iwd~~~~ 600 (882)
++|+. ..+.|++++.+|.+.|||++..+....+..... ...+..++|+|+.. .|+++++|. .|.+||++.-
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~----~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG----RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCC----ccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 99987 466788999999999999997766655543221 13588999999874 666666554 7999998853
Q ss_pred -ceEEEEEeccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCC-EEEEEeCCCe
Q 047837 601 -KLIRSFKQAKDFGDPMKVTVDPSG-SYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCK-HIVSVGGDGL 677 (882)
Q Consensus 601 -~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~ 677 (882)
..++++. +|...|.++.|++.+ ++|++++.|+.|.+|+.++|+.+..+......+..+.|+|... .++.++-||.
T Consensus 243 ssP~k~~~--~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 243 SSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred CCchhhhc--ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 4667776 899999999999965 8999999999999999999999999988888999999999766 7788899999
Q ss_pred EEEEeCCCCC
Q 047837 678 QRVKEKYGIL 687 (882)
Q Consensus 678 i~vwd~~~~~ 687 (882)
|.|+.+.+..
T Consensus 321 I~I~sl~~~~ 330 (1049)
T KOG0307|consen 321 ISIYSLQGTD 330 (1049)
T ss_pred eeeeeeecCC
Confidence 9999997654
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=7.4e-18 Score=157.39 Aligned_cols=293 Identities=14% Similarity=0.161 Sum_probs=199.1
Q ss_pred cceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 373 v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
...+.|+ |||..|++-+.|..+++|++...-..... ...+.+.
T Consensus 52 ~kgckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~---~~~~~~~--------------------------------- 94 (406)
T KOG2919|consen 52 LKGCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKA---DGPLNFS--------------------------------- 94 (406)
T ss_pred hccceeC-CCCceEEeecccCeeeEEecChhhcccCC---CCccccc---------------------------------
Confidence 3456788 89999999999999999998642211100 0000000
Q ss_pred CCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee--cCCCC---EEEEE
Q 047837 453 SRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID--DHSAA---VTAVK 527 (882)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~h~~~---v~~~~ 527 (882)
. ...+.-.....|...+|-+..+. ..++-+++++.+.+.-|++||.-++ ++...+. .|... ..+++
T Consensus 95 ~--~~~~r~~eg~tvydy~wYs~M~s------~qP~t~l~a~ssr~~PIh~wdaftG-~lraSy~~ydh~de~taAhsL~ 165 (406)
T KOG2919|consen 95 K--HLSYRYQEGETVYDYCWYSRMKS------DQPSTNLFAVSSRDQPIHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQ 165 (406)
T ss_pred c--ceeEEeccCCEEEEEEeeecccc------CCCccceeeeccccCceeeeecccc-ccccchhhhhhHHhhhhheeEE
Confidence 0 00001123345566666533221 1122348999999999999999887 4544443 34433 46899
Q ss_pred EccCCCEEEEEeCCCeEEEEeCc-cCccceeeecc-ceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEE
Q 047837 528 FTCNGRKILSCSADRSLVVRDVV-ETNSAYKISRR-HQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIR 604 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~ 604 (882)
|+|||.+|+.|. ...|+++|+. .+..+...... +...+..+.+.+++|+|-. +.++.++....+-||.-..+.++.
T Consensus 166 Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ 244 (406)
T KOG2919|consen 166 FSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ 244 (406)
T ss_pred ecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee
Confidence 999999999776 4679999994 33333222221 2134446789999999955 589999999999999988889998
Q ss_pred EEEeccCCCCcEEEEECCCCCEEEEEeC-CCcEEEEEccC-CeEEEEEccCCC-CeEEEE--ECCCCCEEEEEeCCCeEE
Q 047837 605 SFKQAKDFGDPMKVTVDPSGSYLVCSYS-NKSICLYDFIS-GEMVAKAMGHGE-VITGVT--FLPDCKHIVSVGGDGLQR 679 (882)
Q Consensus 605 ~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~i~iwd~~~-~~~~~~~~~h~~-~v~~l~--~s~d~~~l~s~~~dg~i~ 679 (882)
.+- +|.+.|+.++|.+||+.|.+|.. |-.|-.||++. +.++..+..|.+ .=..|. ..|++++|++|+.||.|+
T Consensus 245 llg--gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 245 LLG--GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eec--ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 887 99999999999999999999875 66899999985 567777777765 333444 468999999999999999
Q ss_pred EEeCCCCCC-Cccc-CCCCCcccEEEecCCCeEEEec
Q 047837 680 VKEKYGILP-PRNF-AQPAALSPIIFCEEEDQKCRMD 714 (882)
Q Consensus 680 vwd~~~~~~-~~~~-~~~~~~~~~~~s~~~~~~~~~~ 714 (882)
+||+.+.-. ...+ .....++.+.+.|.-..++...
T Consensus 323 vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred EEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 999988433 3222 3334445555555544444333
No 166
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=162.74 Aligned_cols=399 Identities=14% Similarity=0.177 Sum_probs=249.3
Q ss_pred EEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeee
Q 047837 49 CVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLK 125 (882)
Q Consensus 49 ~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~ 125 (882)
-..|||+|+|||+... -.+.|-|.++.+.++.+.. -..|..+.|..|.-+++.+- +.|.+|++...+-..++.
T Consensus 13 ~c~fSp~g~yiAs~~~---yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR---YRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeee---eEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 3679999999999963 3799999999887665543 56788999999999988877 899999999988888888
Q ss_pred cCCcccceeEEEEccCCCEEEEECC--CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccC
Q 047837 126 ANSSCSAITSACFSSDAKFIVTAGK--KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDN 203 (882)
Q Consensus 126 ~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 203 (882)
... .++.++.|||||+.+...++ -.|.+|.+.+..... ..|.+
T Consensus 89 eg~--agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----------~~~pK----------------------- 133 (447)
T KOG4497|consen 89 EGQ--AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----------LPHPK----------------------- 133 (447)
T ss_pred cCC--CcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----------ecccc-----------------------
Confidence 766 89999999999998888876 479999998765511 11111
Q ss_pred CcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeec---ccceeccccc
Q 047837 204 GVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDI---QSLKHAGTLH 280 (882)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~---~~~~~~~~~~ 280 (882)
..+.+++|+|||++.+..+.....-.+++ ..-..++.+
T Consensus 134 --------------------------------------~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f- 174 (447)
T KOG4497|consen 134 --------------------------------------TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF- 174 (447)
T ss_pred --------------------------------------cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc-
Confidence 01167899999999888765421111111 111111111
Q ss_pred ccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeC---CceEEEEEcccccccceeeeeecCccee
Q 047837 281 YSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYG---DHSLYVWDIHDVNEATRCCVLVSHSACI 357 (882)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v 357 (882)
.-...+...+.|+|||..++.-. +-.|+.|.-
T Consensus 175 --------------------------~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------------- 209 (447)
T KOG4497|consen 175 --------------------------KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------------- 209 (447)
T ss_pred --------------------------CCCcccccCceECCCCcEEEEecchhhheeeeeee-------------------
Confidence 11223344688999998665432 333333322
Q ss_pred eeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeee
Q 047837 358 WDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTM 437 (882)
Q Consensus 358 ~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (882)
.-++..++|+ |.+++|+.|+.|+.+|+.+--+-+...++.
T Consensus 210 ------------~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~efl--------------------------- 249 (447)
T KOG4497|consen 210 ------------GLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFL--------------------------- 249 (447)
T ss_pred ------------ccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhc---------------------------
Confidence 1345556777 789999999999999988765544332211
Q ss_pred eeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee
Q 047837 438 ETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID 517 (882)
Q Consensus 438 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 517 (882)
-.+.-.|.+..+..-+.. +.+
T Consensus 250 ------------------------------------------------------hl~s~~dp~~~~~~ke~~-~~~---- 270 (447)
T KOG4497|consen 250 ------------------------------------------------------HLCSYHDPTLHLLEKETF-SIV---- 270 (447)
T ss_pred ------------------------------------------------------cchhccCchhhhhhhhhc-chh----
Confidence 001111111111110000 010
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc-eeeeccceecccCCceEEEEEecCCCEEEEEeCC--CcEEE
Q 047837 518 DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA-YKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD--KKINS 594 (882)
Q Consensus 518 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~i 594 (882)
.-...++.|.|..-- +.-.. ..=.+|........ ..+........+...+.-++|++|..++++-... ..+.+
T Consensus 271 --ql~~~cLsf~p~~~~-a~~~~-~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 271 --QLLHHCLSFTPTDLE-AHIWE-ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL 346 (447)
T ss_pred --hhcccccccCCCccc-cCccc-cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence 011123445442110 00000 00011222111111 1111111112223467789999999999886543 47999
Q ss_pred EEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 595 FSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 595 wd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
||++..++...+. ...+|....|+|....|+.+.....+++|.......+. ..+..-.|..+.|..+|..++..+.
T Consensus 347 Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 347 WDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred Eechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcC
Confidence 9999877766663 45689999999998888887777789999976544443 3445578999999999999999998
Q ss_pred CCe
Q 047837 675 DGL 677 (882)
Q Consensus 675 dg~ 677 (882)
|.-
T Consensus 423 Daf 425 (447)
T KOG4497|consen 423 DAF 425 (447)
T ss_pred Cce
Confidence 863
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=4.8e-18 Score=163.84 Aligned_cols=313 Identities=18% Similarity=0.226 Sum_probs=214.1
Q ss_pred CCcEEEeecCCC--eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 311 PNAIACQFSTSE--KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 311 ~~~~~~~~s~~~--~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
..+..+.|.++. ++.+++.|..|++|.+...+... ....+.++..+..|...|+++.|+ ++|++|++
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLAS 82 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFS-PDGELLAS 82 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEc-CCcCeeee
Confidence 345677777764 57778889999999986554322 114566667778899999999999 89999999
Q ss_pred eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 389 CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
|+.+|.+.+|-...-.... ..... .. .. .... ....+.+|...|.
T Consensus 83 g~D~g~v~lWk~~~~~~~~----~d~e~--~~---------------------~k-e~w~-------v~k~lr~h~~diy 127 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFD----ADTEA--DL---------------------NK-EKWV-------VKKVLRGHRDDIY 127 (434)
T ss_pred cCCCceEEEEEecCcCCcc----ccchh--hh---------------------Cc-cceE-------EEEEecccccchh
Confidence 9999999999876411100 00000 00 00 0000 0234667999999
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
.++|++++. ++++++.|..+++||+..+ .....+.+|...+..++|.|-++++++-+.|...+.+.
T Consensus 128 dL~Ws~d~~-------------~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 128 DLAWSPDSN-------------FLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred hhhccCCCc-------------eeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 999999998 9999999999999999987 88899999999999999999999999999888777776
Q ss_pred CccCccceeeeccc----e---------ecccC----CceEEEEEecCCCEEEEEeC----CC-----cEEEEEccCC-c
Q 047837 549 VVETNSAYKISRRH----Q---------QLASQ----GTVYDMDIDPTMEVVITVGQ----DK-----KINSFSIAAG-K 601 (882)
Q Consensus 549 ~~~~~~~~~~~~~~----~---------~~~~~----~~v~~~~~sp~~~~l~~~~~----d~-----~v~iwd~~~~-~ 601 (882)
+............. . .+-|. .-...++|+|+|.++++... ++ ..++|+-... +
T Consensus 194 ~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r 273 (434)
T KOG1009|consen 194 AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR 273 (434)
T ss_pred eeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC
Confidence 65433222211000 0 00111 13456889999999887542 22 2344443211 1
Q ss_pred eEEEEEeccCCCCcEEEEECC------------------CCCEEEEEeCCCcEEEEEccCCeEEEEEcc-CCCCeEEEEE
Q 047837 602 LIRSFKQAKDFGDPMKVTVDP------------------SGSYLVCSYSNKSICLYDFISGEMVAKAMG-HGEVITGVTF 662 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~sp------------------dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~ 662 (882)
+...+. ........+.|+| -+..+|.++. +.|++||.++.+++..... |-..|+.++|
T Consensus 274 P~~~lp--~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaw 350 (434)
T KOG1009|consen 274 PAARLP--SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAW 350 (434)
T ss_pred ceeecC--CCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceee
Confidence 222222 2223333344433 2334566654 4799999999888877654 8999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 663 LPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 663 s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
++||.+|+..+.||...+--++..
T Consensus 351 s~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 351 SDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred cCCCcEEEEeccCCceEEEEEcch
Confidence 999999999999997766555443
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=6.4e-18 Score=158.33 Aligned_cols=318 Identities=16% Similarity=0.221 Sum_probs=215.9
Q ss_pred eccccceeEEEECC-----CCCEEEEEc-CEEEEEEcCcc---eeeeeeecCCcccceeEEEEccC----CCEEEEECC-
Q 047837 85 KGHLYGVECIAFSP-----DGEHLVTVG-GYIYLWNWRSA---MLVMKLKANSSCSAITSACFSSD----AKFIVTAGK- 150 (882)
Q Consensus 85 ~~h~~~V~~lafsp-----dg~~Las~~-~~i~iWd~~~g---~~~~~~~~~~~~~~v~~l~fs~d----~~~l~~~~~- 150 (882)
..|..+|..++|.+ +-+.+|++| ..+.|+..... ++++......+......++|+=| ..+||++|.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 45889999999985 445778888 89999987643 45555554445577888888753 347777776
Q ss_pred CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEc
Q 047837 151 KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVH 230 (882)
Q Consensus 151 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~ 230 (882)
|.|+|.|+.++++ .+.+.+|+..+
T Consensus 115 GvIrVid~~~~~~--------~~~~~ghG~sI------------------------------------------------ 138 (385)
T KOG1034|consen 115 GVIRVIDVVSGQC--------SKNYRGHGGSI------------------------------------------------ 138 (385)
T ss_pred eEEEEEecchhhh--------ccceeccCccc------------------------------------------------
Confidence 8999999998877 55566677666
Q ss_pred cCceeeeEeeceeeeeEEEecCC-CEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCC
Q 047837 231 SGLSVTKSVDLKVKNGFALSASS-KLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPT 309 (882)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (882)
+.+.|.|+. ++|++++.|..||+|++++..++..+- ...+|
T Consensus 139 --------------Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG------------------------G~egH 180 (385)
T KOG1034|consen 139 --------------NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG------------------------GVEGH 180 (385)
T ss_pred --------------hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec------------------------ccccc
Confidence 678888874 689999999999999999999887663 23356
Q ss_pred CCCcEEEeecCCCeE-EEEeCCceEEEEEcccccccceeeee-----ecCcceeee--eccc--CCCCCCCCCcceeeec
Q 047837 310 IPNAIACQFSTSEKL-VVVYGDHSLYVWDIHDVNEATRCCVL-----VSHSACIWD--IKNL--GCENMHDPSVSCVARG 379 (882)
Q Consensus 310 ~~~~~~~~~s~~~~l-l~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~--i~~~--~~~~~h~~~v~~~~~~ 379 (882)
...++++.|+++|.. ++++.|.+|++|++...+....+... .+...+... ..|. .....|...|.|+.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 677889999999874 55666999999999854432211110 011111100 1111 1335699999999997
Q ss_pred cCCCcEEEEeeCCCcEEEEecC-CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEE
Q 047837 380 CTGGVSFSTCSADGTIRLWDLA-LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTL 458 (882)
Q Consensus 380 ~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 458 (882)
|+++++-+-++.|..|... -++.+.+...+... .. ...
T Consensus 261 ---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~------------------------------~T--------i~~ 299 (385)
T KOG1034|consen 261 ---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA------------------------------TT--------ILG 299 (385)
T ss_pred ---hhheeecccCceEEEEecchhhhhhhccCCCccc------------------------------ee--------eee
Confidence 6899999999999999983 22221111000000 00 000
Q ss_pred EeeeccceEEEE--EEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee-EEEee--cCCCCEEEEEEccCCC
Q 047837 459 LLDAHDAEILSL--SFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL-IESID--DHSAAVTAVKFTCNGR 533 (882)
Q Consensus 459 ~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~-~~~~~--~h~~~v~~~~~s~~~~ 533 (882)
.+.-....|.-+ +|.+-++ .||.|...|.|.+||++..... ..++. .....|...+|+.|+.
T Consensus 300 ~~~~~~c~iWfirf~~d~~~~-------------~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 300 EFDYPMCDIWFIRFAFDPWQK-------------MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred EeccCccceEEEEEeecHHHH-------------HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 112223334433 3444444 8999999999999999875332 22222 2346799999999999
Q ss_pred EEEEEeCCCeEEEEeCc
Q 047837 534 KILSCSADRSLVVRDVV 550 (882)
Q Consensus 534 ~l~s~~~dg~i~vwd~~ 550 (882)
.|+..+.|++|.-||..
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999864
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=5.3e-18 Score=158.83 Aligned_cols=297 Identities=18% Similarity=0.199 Sum_probs=197.4
Q ss_pred eeeeeEEEec----CCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEe
Q 047837 242 KVKNGFALSA----SSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQ 317 (882)
Q Consensus 242 ~~~~~~~~s~----d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (882)
..+.+++|++ +...+++......+.+|+....-.+..++. .. -..+....+.|+
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~---y~-------------------D~d~~Esfytcs 96 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQS---YA-------------------DEDHDESFYTCS 96 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeee---cc-------------------CCCCCcceEEEE
Confidence 3446777774 333444444466788888664322222110 00 001333445677
Q ss_pred ecCCC----e-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC
Q 047837 318 FSTSE----K-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD 392 (882)
Q Consensus 318 ~s~~~----~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d 392 (882)
|+-|- - +++++.-|.|+|.|+..++... .+.+|...|..+.+ .|.+.+++++++.|
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~----------------~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKF----------------HPDRPQLVLSASKD 157 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhc----------------CCCCCcEEEEecCC
Confidence 76552 2 4555668999999998775543 46666665555554 45678899999999
Q ss_pred CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE
Q 047837 393 GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF 472 (882)
Q Consensus 393 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~ 472 (882)
.+||+|++++..++.-+ . -+.+|.+.|.++.|
T Consensus 158 ~svRlwnI~~~~Cv~Vf--------------------------------------------G----G~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVF--------------------------------------------G----GVEGHRDEVLSVDF 189 (385)
T ss_pred ceEEEEeccCCeEEEEe--------------------------------------------c----ccccccCcEEEEEE
Confidence 99999999987654311 0 14589999999999
Q ss_pred ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-----eeE----------------------EEeecCCCCEEE
Q 047837 473 SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-----DLI----------------------ESIDDHSAAVTA 525 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-----~~~----------------------~~~~~h~~~v~~ 525 (882)
++++. ++++++.|.++++|++.... ++. .+...|...|.|
T Consensus 190 ~~~gd-------------~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 190 SLDGD-------------RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cCCCC-------------eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 99998 99999999999999998310 000 012246666777
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCcc-Cccceeeec-------cceecccCCceEE--EEEecCCCEEEEEeCCCcEEEE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVE-TNSAYKISR-------RHQQLASQGTVYD--MDIDPTMEVVITVGQDKKINSF 595 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~-------~~~~~~~~~~v~~--~~~sp~~~~l~~~~~d~~v~iw 595 (882)
+.| -|.++++-+-++.|..|.... .+......+ .....-....|.- .+|.|-++.||.|.+.|+|.+|
T Consensus 257 vrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 776 367899989899999998731 111111100 0011112234444 4566778899999999999999
Q ss_pred EccCCceE--EEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 596 SIAAGKLI--RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 596 d~~~~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
|++..+.. .++........|...+||.||.+|+..++|++|.-||..
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99976652 233323445678999999999999999999999999964
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.4e-19 Score=176.62 Aligned_cols=264 Identities=19% Similarity=0.271 Sum_probs=194.4
Q ss_pred CCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeecccc
Q 047837 365 CENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQ 444 (882)
Q Consensus 365 ~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (882)
....|...|+.++|. +....|++++.||+|++|+++.... +....+
T Consensus 289 tl~s~~d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~-------s~~~~~-------------------------- 334 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKK-------SAEKDV-------------------------- 334 (577)
T ss_pred eeecchhhhhhhhcC-CCCCeEEEeccccchhhhhhcccCC-------ccccce--------------------------
Confidence 344566777777776 6677899999999999999943111 000000
Q ss_pred CeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC------c---eeEEE
Q 047837 445 GYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN------F---DLIES 515 (882)
Q Consensus 445 ~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~------~---~~~~~ 515 (882)
.....+.+|.++|.|+++.+.++ .+++|+.||+|+.|++..+ . .....
T Consensus 335 ----------epi~tfraH~gPVl~v~v~~n~~-------------~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~ 391 (577)
T KOG0642|consen 335 ----------EPILTFRAHEGPVLCVVVPSNGE-------------HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT 391 (577)
T ss_pred ----------eeeEEEecccCceEEEEecCCce-------------EEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence 12356889999999999999998 9999999999999965421 1 34567
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEE
Q 047837 516 IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINS 594 (882)
Q Consensus 516 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i 594 (882)
+.||.+.|+.+++|+....|++++.||+++.|+...... ..+.... ..+.-..+.+-... ...++...-+.-.+
T Consensus 392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~----e~g~Plsvd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK----EHGYPLSVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc----ccCCcceEeeccchhHhhhhhcccccccc
Confidence 889999999999999988999999999999999875443 1111111 11334455554332 12222223334445
Q ss_pred EEccCCceEEEEEecc-----CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEE
Q 047837 595 FSIAAGKLIRSFKQAK-----DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHI 669 (882)
Q Consensus 595 wd~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 669 (882)
++...+..+..+.... ....+..+.+.|.+.+.+++..|+.|+++|..++++++....|...++++++.|+|-+|
T Consensus 467 ~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l 546 (577)
T KOG0642|consen 467 DDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYL 546 (577)
T ss_pred hhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceE
Confidence 5555555555554221 22457789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCCc
Q 047837 670 VSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 670 ~s~~~dg~i~vwd~~~~~~~~ 690 (882)
++++.|+.+++|.+.......
T Consensus 547 ~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 547 MSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred EeecCCceeehhhccchheee
Confidence 999999999999987655543
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=7.3e-18 Score=154.90 Aligned_cols=283 Identities=16% Similarity=0.209 Sum_probs=205.3
Q ss_pred EEEEeC----CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC-------
Q 047837 324 LVVVYG----DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD------- 392 (882)
Q Consensus 324 ll~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d------- 392 (882)
+++|.. |+.|.+.+++.+.......++..|.+.||.+... |.+..+|+|+..+
T Consensus 29 FlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~----------------P~d~~ilaT~yn~~s~s~vl 92 (370)
T KOG1007|consen 29 FLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS----------------PFDQRILATVYNDTSDSGVL 92 (370)
T ss_pred EEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcC----------------CCCCceEEEEEeccCCCcce
Confidence 566654 7899999988877666666788888888887653 4566677776543
Q ss_pred CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEee-eccceEEEEE
Q 047837 393 GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLD-AHDAEILSLS 471 (882)
Q Consensus 393 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~v~~~~ 471 (882)
-.+.+|.+.......... ...++ ..+. .+-+.|.|+.
T Consensus 93 ~~aaiw~ipe~~~~S~~~----------------------------------tlE~v--------~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSS----------------------------------TLECV--------ASLDTEAVGKINCVE 130 (370)
T ss_pred eeEEEEecccccCccccc----------------------------------hhhHh--------hcCCHHHhCceeeEE
Confidence 235688876433210000 00000 0111 4556899999
Q ss_pred EecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-----cCCCCEEEEEEcc--CCCEEEEEeCCCeE
Q 047837 472 FSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-----DHSAAVTAVKFTC--NGRKILSCSADRSL 544 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-----~h~~~v~~~~~s~--~~~~l~s~~~dg~i 544 (882)
|.|++. .+++-. |..|.+|++....+.+..+. +|....++-+|+| ||+.+++.+ |+++
T Consensus 131 w~Pns~-------------klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl 195 (370)
T KOG1007|consen 131 WEPNSD-------------KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTL 195 (370)
T ss_pred EcCCCC-------------eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcE
Confidence 999887 566654 78899999998655344332 3566788889999 788887665 7889
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~sp 622 (882)
..||+++......+...|. ..|..+.|.|+.+ +|++|+.||.|++||.+.- ..++++. +|...+.++.|+|
T Consensus 196 ~~~D~RT~~~~~sI~dAHg-----q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHG-----QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWVWAVRFNP 268 (370)
T ss_pred EEEEccchhhhcchhhhhc-----ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEEEEEEecC
Confidence 9999998777776665553 6899999999876 6889999999999999864 4677776 8999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEEccCC-----------------------------eEEEEEccCCCCeEEEEECCC-CCEEEE
Q 047837 623 S-GSYLVCSYSNKSICLYDFISG-----------------------------EMVAKAMGHGEVITGVTFLPD-CKHIVS 671 (882)
Q Consensus 623 d-g~~l~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~s~d-~~~l~s 671 (882)
. .+++.+|+.|..|.+|....- ..+.++..|...|.+++||.- .-.+++
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 4 567889999999999976210 123466779999999999874 456778
Q ss_pred EeCCCeEEEEeCCCC
Q 047837 672 VGGDGLQRVKEKYGI 686 (882)
Q Consensus 672 ~~~dg~i~vwd~~~~ 686 (882)
-+.||.+.|=.+...
T Consensus 349 LSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 349 LSYDGRVIISSVPRF 363 (370)
T ss_pred eccCceEEeecCChh
Confidence 899999988766543
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=3.3e-17 Score=153.08 Aligned_cols=237 Identities=17% Similarity=0.227 Sum_probs=174.9
Q ss_pred ecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeC
Q 047837 250 SASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYG 329 (882)
Q Consensus 250 s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~ 329 (882)
-|+..++|+.+.+.-|.+||.-+|+........ .|. .....+.+++|+|||..|.++.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~y------dh~----------------de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY------DHQ----------------DEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhh------hhH----------------HhhhhheeEEecCCCCeEeecc
Confidence 478889999999999999999999876554311 111 1223456899999999999999
Q ss_pred CceEEEEEccc-ccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeee
Q 047837 330 DHSLYVWDIHD-VNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSK 408 (882)
Q Consensus 330 d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~ 408 (882)
.+.|+++|+.. +.......++. + ...+..+-+.|++|+|.+...++.++....+-++.-.....+
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~-~-----------~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-- 243 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVT-K-----------GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-- 243 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhh-c-----------ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce--
Confidence 99999999943 22111111111 1 023446778899999888889999999888888887655443
Q ss_pred cccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCC
Q 047837 409 DVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDS 488 (882)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 488 (882)
.++.+|.+.|+.+.|.++++
T Consensus 244 -------------------------------------------------~llggh~gGvThL~~~edGn----------- 263 (406)
T KOG2919|consen 244 -------------------------------------------------QLLGGHGGGVTHLQWCEDGN----------- 263 (406)
T ss_pred -------------------------------------------------eeecccCCCeeeEEeccCcC-----------
Confidence 24668999999999999998
Q ss_pred ceEEEEEc-CCCcEEEEEcCCCceeEEEeecCCC-CEEEEE--EccCCCEEEEEeCCCeEEEEeCccCccceeeecccee
Q 047837 489 HYFLASGG-RDRTIHLYDVKRNFDLIESIDDHSA-AVTAVK--FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQ 564 (882)
Q Consensus 489 ~~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~h~~-~v~~~~--~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 564 (882)
.|.+|. .|-.|..||++....++..+..|.. .-..|- ..|++++|++|+.||.|++||++....... ..
T Consensus 264 --~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s-----v~ 336 (406)
T KOG2919|consen 264 --KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS-----VT 336 (406)
T ss_pred --eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc-----cc
Confidence 677776 4778999999987677777777765 333444 467899999999999999999987443222 22
Q ss_pred cccCCceEEEEEecCCCEEEEEeCC
Q 047837 565 LASQGTVYDMDIDPTMEVVITVGQD 589 (882)
Q Consensus 565 ~~~~~~v~~~~~sp~~~~l~~~~~d 589 (882)
..+...++.++++|--.++++++..
T Consensus 337 ~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccceecCcccceeeeccCc
Confidence 2334789999999998888887654
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=4.5e-18 Score=165.93 Aligned_cols=258 Identities=16% Similarity=0.207 Sum_probs=183.9
Q ss_pred CeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeeccc--CCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 322 EKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNL--GCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 322 ~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
|++++ |+.|..|.|||++-.....++..+..-.+......-. ....+|+..|.+++|+....+.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 34555 5559999999997665555554444222221111100 11245888888888886678899999999999999
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCC
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKK 478 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (882)
|+.++++.. .+..|.+.|.++.|+|...
T Consensus 272 D~~~g~p~~---------------------------------------------------s~~~~~k~Vq~l~wh~~~p- 299 (463)
T KOG0270|consen 272 DVDTGKPKS---------------------------------------------------SITHHGKKVQTLEWHPYEP- 299 (463)
T ss_pred EcCCCCcce---------------------------------------------------ehhhcCCceeEEEecCCCc-
Confidence 999987643 2446899999999999876
Q ss_pred CccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccC-CCEEEEEeCCCeEEEEeCccCcccee
Q 047837 479 DDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCN-GRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
.+|++|+.|++|.+.|.+.....-..++ ..+.|-.++|.|. ...+++++.||+++-+|++.......
T Consensus 300 -----------~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 300 -----------SVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred -----------eEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee
Confidence 4899999999999999985322222222 4578999999994 45677888999999999997764443
Q ss_pred eeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCC-EEEEEeCCCc
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS-YLVCSYSNKS 635 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~ 635 (882)
.. .+|.+.|.++++++.-. ++++++.|+.|++|++............-.-+...|.++.|+-. +||.|+..+.
T Consensus 368 t~-----~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 368 TL-----KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred EE-----EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce
Confidence 33 34558999999998654 78899999999999987543322211011223466777888654 5678888888
Q ss_pred EEEEEccCCeEEE
Q 047837 636 ICLYDFISGEMVA 648 (882)
Q Consensus 636 i~iwd~~~~~~~~ 648 (882)
++|||+.++..+.
T Consensus 443 ~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 443 LRVWDIFTNSPVR 455 (463)
T ss_pred EEEeecccChhHH
Confidence 9999998876543
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1e-17 Score=157.93 Aligned_cols=280 Identities=16% Similarity=0.210 Sum_probs=188.7
Q ss_pred CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccC-CCcEEEEeeCCCcEEEEec
Q 047837 322 EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCT-GGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 322 ~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~-~~~~l~t~~~dg~i~vwd~ 400 (882)
..++++.++|.|++||..+++... .+.++...+. .++|... ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---~fk~~~~~~N----------------~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---EFKGPPATTN----------------GVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---eecCCCCccc----------------ceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 357778889999999998865443 3445444443 4444322 5677999999999999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc-ceEEEEEEecCCCCC
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD-AEILSLSFSLSSKKD 479 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~v~~~~~~~~~~~~ 479 (882)
+......+.... .+. .+-.+++.+-..+
T Consensus 102 Rs~~e~a~~~~~-------------------------------------------------~~~~~~f~~ld~nck~~-- 130 (376)
T KOG1188|consen 102 RSQAESARISWT-------------------------------------------------QQSGTPFICLDLNCKKN-- 130 (376)
T ss_pred ecchhhhheecc-------------------------------------------------CCCCCcceEeeccCcCC--
Confidence 987654332111 111 1222333332222
Q ss_pred ccceeccCCceEEEEEc----CCCcEEEEEcCCCceeEEE-eecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCc
Q 047837 480 DVLEEVTDSHYFLASGG----RDRTIHLYDVKRNFDLIES-IDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~----~dg~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
++++|. .+-.|.+||++...+++.. ...|.+.|+++.|+| +.++|++|+.||.|.+||+....
T Consensus 131 -----------ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 131 -----------IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred -----------eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 566664 4677999999987664444 457999999999999 67899999999999999998553
Q ss_pred cceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEEEEEeccC----------CCCcEEEEECC
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIRSFKQAKD----------FGDPMKVTVDP 622 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~sp 622 (882)
....+ +....+...|.++.|..++ +.|.+-+...+..+|+++.+.....+....- ...+.......
T Consensus 200 EeDaL---~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDAL---LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhH---HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 22222 2233455679999999877 4688888999999999998886655542110 11122222222
Q ss_pred CCCEEEEEeC-CCcEEEEEcc---C---CeEEEEEcc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 623 SGSYLVCSYS-NKSICLYDFI---S---GEMVAKAMG-HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 623 dg~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
++..++.++. -+...++-+. + .+.+..+.+ |..-|+++.|...+.+|.|||.||.+.+|...+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 4555555544 5555555443 2 345566666 777889999999999999999999999999743
No 175
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=156.05 Aligned_cols=136 Identities=18% Similarity=0.317 Sum_probs=113.1
Q ss_pred cccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeec
Q 047837 7 IKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKG 86 (882)
Q Consensus 7 ~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~ 86 (882)
.|+|+|+ .++......++|-|.++-+..+.+..- ..|..+-|+.|.-++..+.. .++.|.+|++...+-...+..
T Consensus 15 ~fSp~g~-yiAs~~~yrlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~y-k~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 15 SFSPCGN-YIASLSRYRLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAY-KDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eECCCCC-eeeeeeeeEEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeee-ccceEEEEEeecceeEEEecc
Confidence 5899987 888888999999999988877665443 57999999999988777653 488999999999988888988
Q ss_pred cccceeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC
Q 047837 87 HLYGVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK 150 (882)
Q Consensus 87 h~~~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~ 150 (882)
..+++.++.|||||+.|+..+ -.|.||.+.+.+... ++-.. ..+..++|+|||++.+.+++
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK--~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPK--TNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccc--cCceeEEECCCCceeeeeec
Confidence 999999999999998877766 899999998876543 23232 56799999999999999886
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=6.6e-17 Score=156.06 Aligned_cols=156 Identities=22% Similarity=0.441 Sum_probs=122.8
Q ss_pred CCeEEEEEcCCCC-EEEEeecCCCCeEEEEECCCce---------eeEEeeccccceeEEEECCCCCEEEEEc--CEEEE
Q 047837 45 KPLCCVAMSRDGR-YVAAGESGPQPAVLVWDCANLA---------FISELKGHLYGVECIAFSPDGEHLVTVG--GYIYL 112 (882)
Q Consensus 45 ~~I~~va~spdg~-~la~g~~~~d~~I~vwd~~t~~---------~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~i 112 (882)
.+|..+.|.++.. .||+| |.|..|+||-+..+. -+..|..|...|+++.|+|+|..||+|+ |.|.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~--G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATA--GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcccceecc--cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 6899999999877 99999 558899999886432 2456788999999999999999999999 99999
Q ss_pred EEcC--------c--------ceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccce
Q 047837 113 WNWR--------S--------AMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESL 175 (882)
Q Consensus 113 Wd~~--------~--------g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (882)
|-.. + ......+.+|. ..|..++|+||+.++++++- +.+++||+..+.. ...+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~--~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--------~~~~ 161 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHR--DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--------LAIL 161 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccc--cchhhhhccCCCceeeeeeccceEEEEEecccee--------Eeec
Confidence 9765 2 12334455555 89999999999999999875 7899999998876 1122
Q ss_pred eecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCE
Q 047837 176 TLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKL 255 (882)
Q Consensus 176 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 255 (882)
..|... ++.++|.|-+++
T Consensus 162 ~dh~~y--------------------------------------------------------------vqgvawDpl~qy 179 (434)
T KOG1009|consen 162 DDHEHY--------------------------------------------------------------VQGVAWDPLNQY 179 (434)
T ss_pred cccccc--------------------------------------------------------------cceeecchhhhh
Confidence 222222 278899999999
Q ss_pred EEEEecCCeEEeeecccce
Q 047837 256 IACACSNGAVHLFDIQSLK 274 (882)
Q Consensus 256 l~~~~~dg~I~vwd~~~~~ 274 (882)
+++-+.|...+.+++...+
T Consensus 180 v~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred hhhhccCcccceeeeeeee
Confidence 9999988877777765433
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=8.6e-18 Score=152.58 Aligned_cols=298 Identities=14% Similarity=0.219 Sum_probs=193.3
Q ss_pred cccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeee-cCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 304 FKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLV-SHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 304 ~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
+.+.|+...+.++.|-.+++|+++..-|.|++|++++..... .++ -+...|..+.. - +
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~----------------~-p- 66 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQS----------------I-P- 66 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccch---hhhhhccceeeceee----------------c-C-
Confidence 345577888889999999999999999999999998875432 333 34444544443 2 3
Q ss_pred CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeec-----CCcc--eEeeeeeeeeeeeeeccccCeEEEEEcCCC
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPM-----STAH--LVSAGIFERNTMETSVSTQGYRSMAVSSRG 455 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 455 (882)
+..+.+-++|+.+.+|++.....+....+....+.+.+. +... .+.... +.....-.........+.+-++.
T Consensus 67 ~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~-rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 67 NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPS-RGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred CcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCC-cccchhhhhccCccceeEccCch
Confidence 367889999999999999875443322111111111111 0000 000000 00000000000001111111111
Q ss_pred CEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce---------eEEEeecCCCCEEEE
Q 047837 456 STLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD---------LIESIDDHSAAVTAV 526 (882)
Q Consensus 456 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~---------~~~~~~~h~~~v~~~ 526 (882)
. .+..+.+.+..+..+.. ..-+++.|.++|.|.+||+.++.+ .......|..+|.++
T Consensus 146 ~----~~Klgsvmc~~~~~~c~----------s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 146 E----RSKLGSVMCQDKDHACG----------STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred h----ccccCceeeeecccccc----------ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 1 13344455554332211 112678889999999999987522 222344689999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
.|.+.-..=++++.+..+..|.++.......+...+. -.+..|..+.+-||++.+|+++.|+.||+|..++...+..+
T Consensus 212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~--lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT--LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred eechhhcCCcCCCccccceeeeeccccCcccccceEE--ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 9998777778888888899999875433222221111 11246888999999999999999999999999999999999
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEc
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~ 641 (882)
+ -|...|.+++|+||..++|+++.|++|-+|++
T Consensus 290 k--yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 K--YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred h--hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8 78899999999999999999999999999986
No 178
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.77 E-value=4.4e-14 Score=139.12 Aligned_cols=438 Identities=17% Similarity=0.189 Sum_probs=247.4
Q ss_pred cccCC-CCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEE-----eecCCCCeEEEEECCCcee
Q 047837 7 IKKPD-SSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAA-----GESGPQPAVLVWDCANLAF 80 (882)
Q Consensus 7 ~~~pd-~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~-----g~~~~d~~I~vwd~~t~~~ 80 (882)
...|| -..+++|.+...+..+++.+++.++. +.|- +-|+.-.|+|||+.+|. ++......+++.+.++|+.
T Consensus 43 ~l~PDI~GD~IiFt~~DdlWe~slk~g~~~ri-tS~l--GVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~ 119 (668)
T COG4946 43 YLNPDIYGDRIIFTCCDDLWEYSLKDGKPLRI-TSGL--GVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEA 119 (668)
T ss_pred hcCCcccCcEEEEEechHHHHhhhccCCeeEE-eccc--ceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcE
Confidence 45677 23478888888899999999998655 5666 78999999999999998 3333345699999999986
Q ss_pred eEEeeccccceeE-EEECCCCCEEEEEc-C-----EEEEEEcC-cceeeeeeecCCcccceeEEEEccCCCEEEEECCCc
Q 047837 81 ISELKGHLYGVEC-IAFSPDGEHLVTVG-G-----YIYLWNWR-SAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKH 152 (882)
Q Consensus 81 ~~~l~~h~~~V~~-lafspdg~~Las~~-~-----~i~iWd~~-~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~ 152 (882)
.+. +-....-+. .-|+|||+.|++.+ . .-.++.+. +|-....+.. ++.+++.+- || .++ .+.++
T Consensus 120 kRi-TyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Lnl----Gpathiv~~-dg-~iv-igRnt 191 (668)
T COG4946 120 KRI-TYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNL----GPATHIVIK-DG-IIV-IGRNT 191 (668)
T ss_pred EEE-EEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccC----CceeeEEEe-CC-EEE-EccCc
Confidence 442 222233344 45999999999998 2 22233322 1221222222 455555543 33 222 22221
Q ss_pred --EEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEc
Q 047837 153 --LKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVH 230 (882)
Q Consensus 153 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~ 230 (882)
+--|.--.+ +....+|..++.|.-+
T Consensus 192 ydLP~WK~YkG--------------------------------------------------GtrGklWis~d~g~tF--- 218 (668)
T COG4946 192 YDLPHWKGYKG--------------------------------------------------GTRGKLWISSDGGKTF--- 218 (668)
T ss_pred ccCcccccccC--------------------------------------------------CccceEEEEecCCcce---
Confidence 222221100 1111123222222100
Q ss_pred cCceeeeEeece-eeeeEEEecCCCEEEEEecCCeEEeeeccc-ceecccccccCcccCCCCCccccchhhhccccccCC
Q 047837 231 SGLSVTKSVDLK-VKNGFALSASSKLIACACSNGAVHLFDIQS-LKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTP 308 (882)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (882)
.+.++.. .+.+-.+- .++..+....+|.=.+|..+- |+-+ ..|.+.
T Consensus 219 -----eK~vdl~~~vS~PmIV-~~RvYFlsD~eG~GnlYSvdldGkDl-----------rrHTnF--------------- 266 (668)
T COG4946 219 -----EKFVDLDGNVSSPMIV-GERVYFLSDHEGVGNLYSVDLDGKDL-----------RRHTNF--------------- 266 (668)
T ss_pred -----eeeeecCCCcCCceEE-cceEEEEecccCccceEEeccCCchh-----------hhcCCc---------------
Confidence 0000000 00000000 112222223344333443321 1111 122111
Q ss_pred CCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceee-eccCCCcEEE
Q 047837 309 TIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVA-RGCTGGVSFS 387 (882)
Q Consensus 309 ~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~-~~~~~~~~l~ 387 (882)
.+-.+-..+.||+-++-...|.|+++|.++......-.-+.-... +.......+..-+. |+..+|++++
T Consensus 267 --tdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk--------~k~~k~~~pskyledfa~~~Gd~ia 336 (668)
T COG4946 267 --TDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRK--------KKQPKFVNPSKYLEDFAVVNGDYIA 336 (668)
T ss_pred --hhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccc--------cccccccCHHHhhhhhccCCCcEEE
Confidence 111222346689999999999999999987654321100000000 00000011111111 3335788888
Q ss_pred EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 388 TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 388 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
..++ |..-+.+...+..+ .-+|.+.|
T Consensus 337 ~VSR-GkaFi~~~~~~~~i-----------------------------------------------------qv~~~~~V 362 (668)
T COG4946 337 LVSR-GKAFIMRPWDGYSI-----------------------------------------------------QVGKKGGV 362 (668)
T ss_pred EEec-CcEEEECCCCCeeE-----------------------------------------------------EcCCCCce
Confidence 8876 56666555443322 22444445
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcCCC-cEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDR-TIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
.-..+..+.+ -++.|..|| .+-|||..++ .++.+...-+.|.++..+++|++++.+.....|.+
T Consensus 363 rY~r~~~~~e-------------~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 363 RYRRIQVDPE-------------GDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred EEEEEccCCc-------------ceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 5444444444 588888888 8999998875 45566667789999999999999999999999999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC----cEEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK----KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
.|+.++... .+.+.. .+-|+.++|+|+++++|.+--+| .|+++|+..++...... ....=.+-+|.|
T Consensus 428 ididngnv~-~idkS~-----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT---~ta~DfsPaFD~ 498 (668)
T COG4946 428 IDIDNGNVR-LIDKSE-----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT---PTAYDFSPAFDP 498 (668)
T ss_pred EEecCCCee-Eecccc-----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC---CcccccCcccCC
Confidence 999976533 222222 36899999999999999988776 68999999877665543 223334456667
Q ss_pred CCCEEE
Q 047837 623 SGSYLV 628 (882)
Q Consensus 623 dg~~l~ 628 (882)
|+++|.
T Consensus 499 d~ryLY 504 (668)
T COG4946 499 DGRYLY 504 (668)
T ss_pred CCcEEE
Confidence 776654
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.4e-15 Score=160.26 Aligned_cols=280 Identities=11% Similarity=0.122 Sum_probs=173.5
Q ss_pred EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe-eCCCcEEEEecCC
Q 047837 324 LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC-SADGTIRLWDLAL 402 (882)
Q Consensus 324 ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~-~~dg~i~vwd~~~ 402 (882)
+++...++.|.+|++.+.........+. +.+....++++ +++++|+++ ..++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----------------~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----------------VPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----------------cCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECC
Confidence 3444568999999996432212211211 12345567787 788887665 4578899999863
Q ss_pred CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccc
Q 047837 403 QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVL 482 (882)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 482 (882)
...+.. +. .....+....++++|+++
T Consensus 67 ~g~l~~----------------------------------------~~---------~~~~~~~p~~i~~~~~g~----- 92 (330)
T PRK11028 67 DGALTF----------------------------------------AA---------ESPLPGSPTHISTDHQGR----- 92 (330)
T ss_pred CCceEE----------------------------------------ee---------eecCCCCceEEEECCCCC-----
Confidence 211100 00 000111234566666666
Q ss_pred eeccCCceEEEEEc-CCCcEEEEEcCCCce---eEEEeecCCCCEEEEEEccCCCEEEEEe-CCCeEEEEeCccCcccee
Q 047837 483 EEVTDSHYFLASGG-RDRTIHLYDVKRNFD---LIESIDDHSAAVTAVKFTCNGRKILSCS-ADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 483 ~~~~~~~~~l~~g~-~dg~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~ 557 (882)
++++++ .++.|.+|++.+... .+..+. +......++++|+++++++++ .++.|.+||+.+......
T Consensus 93 --------~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 93 --------FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred --------EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 555544 588999999974322 222222 334567789999999886544 569999999986332211
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeC-CCcEEEEEccC--Cc--eEEEEEecc----CCCCcEEEEECCCCCEEE
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DKKINSFSIAA--GK--LIRSFKQAK----DFGDPMKVTVDPSGSYLV 628 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~--~~--~~~~~~~~~----~~~~v~~~~~spdg~~l~ 628 (882)
................++|+|++++++++.. +++|.+||+.. ++ .+..+.... +......+.++|+|++|+
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 1000001111235678999999999988876 89999999973 33 233332111 112344689999999999
Q ss_pred EEeC-CCcEEEEEccCCe----EEEEEccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCC
Q 047837 629 CSYS-NKSICLYDFISGE----MVAKAMGHGEVITGVTFLPDCKHIVSVGG-DGLQRVKEKYG 685 (882)
Q Consensus 629 ~~~~-dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~i~vwd~~~ 685 (882)
++.. ++.|.+|++.... .+..... ......+.|+|||++|+++.. +++|.+|++..
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 8854 7899999986532 2222221 124568999999999998875 89999998853
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.7e-17 Score=149.38 Aligned_cols=302 Identities=16% Similarity=0.188 Sum_probs=183.6
Q ss_pred eeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEE
Q 047837 79 AFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFW 156 (882)
Q Consensus 79 ~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iw 156 (882)
.+...|++|.+.|+++.|-.+++ |.++. |.|++|++.+.+.+..++.+. ...|+.+.-.|++.++.-+-+..+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g-~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFG-RLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhc-cceeeceeecCCcchhhcCCCceEEEE
Confidence 35567889999999999998887 66776 999999999999888888442 288999999998554444445789999
Q ss_pred EcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceee
Q 047837 157 TIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVT 236 (882)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~ 236 (882)
++..+..+.. |.-++
T Consensus 83 ~ia~s~~i~i-----------~Si~~------------------------------------------------------ 97 (323)
T KOG0322|consen 83 TIAYSAFISI-----------HSIVV------------------------------------------------------ 97 (323)
T ss_pred EccCcceEEE-----------eeeec------------------------------------------------------
Confidence 9976544111 11000
Q ss_pred eEeeceeeeeEEEe-----cCCC----EEEEEecCCe-EEeeecccceecccccccCcccCCCCCccccchhhhcccccc
Q 047837 237 KSVDLKVKNGFALS-----ASSK----LIACACSNGA-VHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKL 306 (882)
Q Consensus 237 ~~~~~~~~~~~~~s-----~d~~----~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (882)
+++.|. +.++ .++.-+.... +.+-|... ...... .....
T Consensus 98 --------nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~--~tqv~i---------------------~dd~~ 146 (323)
T KOG0322|consen 98 --------NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGD--TTQVQI---------------------ADDSE 146 (323)
T ss_pred --------cccccccceeccCCCcchhheecCCcccchhhhhccCc--cceeEc---------------------cCchh
Confidence 111111 1111 1111000000 01111100 000000 00011
Q ss_pred CCCCCCcEEEeecCC-C-e--EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 307 TPTIPNAIACQFSTS-E-K--LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 307 ~~~~~~~~~~~~s~~-~-~--ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
.+..+.+++..+..+ + + +++|..+|.+.+||+.++...- .+......+.. ...|..+|.++.+. +.
T Consensus 147 ~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~---~~~~~~kv~~~------~ash~qpvlsldya-s~ 216 (323)
T KOG0322|consen 147 RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII---QLPQSSKVESP------NASHKQPVLSLDYA-SS 216 (323)
T ss_pred ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee---ccccccccccc------hhhccCcceeeeec-hh
Confidence 122333444442222 2 2 5667779999999998763211 11111111111 13367777777776 44
Q ss_pred CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 462 (882)
-..=++|+.+..+..|+++......+.. .....
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~gslq~~-----------------------------------------------~e~~l 249 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHSTGSLQIR-----------------------------------------------KEITL 249 (323)
T ss_pred hcCCcCCCccccceeeeeccccCccccc-----------------------------------------------ceEEe
Confidence 4445677888889999887432110000 00112
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCC
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 542 (882)
.+-.|..+..-|+++ ++|+++.|+.|+||..++. .++..++-|...|.+++|+|+...+|.++.|+
T Consensus 250 knpGv~gvrIRpD~K-------------IlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGK-------------ILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cCCCccceEEccCCc-------------EEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 233345555566665 8999999999999999987 78899999999999999999999999999999
Q ss_pred eEEEEeC
Q 047837 543 SLVVRDV 549 (882)
Q Consensus 543 ~i~vwd~ 549 (882)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1.7e-16 Score=152.37 Aligned_cols=237 Identities=15% Similarity=0.182 Sum_probs=176.0
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|..+|..++|+|.+...||+|+.|.+|.+|.+..+......
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------------------------------- 120 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------------------------------- 120 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-------------------------------------
Confidence 4566666667777788999999999999999999865543221
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
..-.+.+.+|...|.-++|+|... +.|++++.|.+|.+||+.++ +.+..+. |.+.|.++
T Consensus 121 -------tepvv~L~gH~rrVg~V~wHPtA~------------NVLlsag~Dn~v~iWnv~tg-eali~l~-hpd~i~S~ 179 (472)
T KOG0303|consen 121 -------TEPVVELYGHQRRVGLVQWHPTAP------------NVLLSAGSDNTVSIWNVGTG-EALITLD-HPDMVYSM 179 (472)
T ss_pred -------ccceEEEeecceeEEEEeecccch------------hhHhhccCCceEEEEeccCC-ceeeecC-CCCeEEEE
Confidence 122456789999999999999876 48999999999999999998 4444565 99999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe---CCCcEEEEEccCCceE
Q 047837 527 KFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG---QDKKINSFSIAAGKLI 603 (882)
Q Consensus 527 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~~~~ 603 (882)
.|+.||.+|++.+.|+.|+|||.++++....- ..|. ...-..+.|-.+|.++-+|. .+..+-+||...-+.-
T Consensus 180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~he----G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHE----GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EeccCCceeeeecccceeEEEcCCCCcEeeec-cccc----CCCcceeEEeccCceeeeccccccccceeccCcccccCc
Confidence 99999999999999999999999987655443 2222 12445667888888544443 4678999998765443
Q ss_pred EEEEeccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEEccCCeE-EEEEcc--CCCCeEEEEECCCC
Q 047837 604 RSFKQAKDFGDPMKVTVDPSGSYLV-CSYSNKSICLYDFISGEM-VAKAMG--HGEVITGVTFLPDC 666 (882)
Q Consensus 604 ~~~~~~~~~~~v~~~~~spdg~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~l~~s~d~ 666 (882)
..+..-...+.|.---|.+|..++. +|-.|+.||-|.+..-.+ ++.+.. ...+-+.+.|-|..
T Consensus 255 ~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 255 IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 3333334566777778899888775 666799999999987653 232322 34566777777753
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=4e-16 Score=149.08 Aligned_cols=151 Identities=21% Similarity=0.369 Sum_probs=131.1
Q ss_pred CCCeEEEeeceEEEEEECCCCceEEEEEec-CCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccc
Q 047837 12 SSSKCAYVAGCVLVVYDVDSSTQSHLMVSH-RMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYG 90 (882)
Q Consensus 12 ~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h-~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~ 90 (882)
+..+++.+-...|.|||+++.+.++++... ..+.++.++.+++++.|||.=..-..|.|+|||+.+.+++..+..|++.
T Consensus 96 Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 96 NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP 175 (391)
T ss_pred ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence 344666666667999999999999988654 3336788888888889999865555789999999999999999999999
Q ss_pred eeEEEECCCCCEEEEEc--C-EEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCc
Q 047837 91 VECIAFSPDGEHLVTVG--G-YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSA 162 (882)
Q Consensus 91 V~~lafspdg~~Las~~--~-~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~ 162 (882)
+-||+|++||.+||+++ | .|+|+.+.+|+.+..++.......|.+++|+||+++|++.++ ++|+++.++...
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999 5 579999999999999987766688999999999999999988 899999997544
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=5.2e-16 Score=142.85 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=198.6
Q ss_pred CCCCeEEEEECCCc--eee-EEeeccccceeEEEECC-CCCEEEEEc---------CEEEEEEcCcc---------eeee
Q 047837 65 GPQPAVLVWDCANL--AFI-SELKGHLYGVECIAFSP-DGEHLVTVG---------GYIYLWNWRSA---------MLVM 122 (882)
Q Consensus 65 ~~d~~I~vwd~~t~--~~~-~~l~~h~~~V~~lafsp-dg~~Las~~---------~~i~iWd~~~g---------~~~~ 122 (882)
-+|+.|.+.++... +.. ..|..|.+.|..|+-+| |.+.|+++- ..+-||.+... +++.
T Consensus 37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 44677777776643 332 34677899999999999 556666653 46889987542 4455
Q ss_pred eeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeeccccc
Q 047837 123 KLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTD 202 (882)
Q Consensus 123 ~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 202 (882)
.+..... +.|.++.|.|++..|++..+..|.+|+++.+..+...+... ...
T Consensus 117 ~Ldteav-g~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss-~s~--------------------------- 167 (370)
T KOG1007|consen 117 SLDTEAV-GKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSS-ESA--------------------------- 167 (370)
T ss_pred cCCHHHh-CceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeeccc-ccc---------------------------
Confidence 5553322 78999999999999999999999999998765411000000 000
Q ss_pred CCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec--CCCEEEEEecCCeEEeeecccceeccccc
Q 047837 203 NGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA--SSKLIACACSNGAVHLFDIQSLKHAGTLH 280 (882)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 280 (882)
. +.....+-+|+| ++..+++.+ |++++.||+.+.++...+.
T Consensus 168 --------------------e----------------~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 168 --------------------E----------------MRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred --------------------c----------------ccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh
Confidence 0 001114557777 677777654 8999999999877665543
Q ss_pred ccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe--EEEEeCCceEEEEEcccccccceeeeeecCcceee
Q 047837 281 YSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK--LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIW 358 (882)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 358 (882)
..+...+..+.|+|+.+ +++++.||.|++||....+. ....+.+|.-.||
T Consensus 211 --------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW 262 (370)
T KOG1007|consen 211 --------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVW 262 (370)
T ss_pred --------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEE
Confidence 23555677899999975 55566699999999976543 2334555555555
Q ss_pred eecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeee
Q 047837 359 DIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTME 438 (882)
Q Consensus 359 ~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (882)
+ +.|++.-.++|++++.|..|.+|....-....+...+...-..
T Consensus 263 ~----------------VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~-------------------- 306 (370)
T KOG1007|consen 263 A----------------VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES-------------------- 306 (370)
T ss_pred E----------------EEecCccceEEEecCCCceeEEEeccccccccccccccccccC--------------------
Confidence 5 4555556788999999999999987654322221111110000
Q ss_pred eeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC
Q 047837 439 TSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR 508 (882)
Q Consensus 439 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~ 508 (882)
...+.......-+||.+..+..|.+.|++++|+...+ .++|+-+.||.+.|=.+..
T Consensus 307 --e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP------------WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 307 --EDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP------------WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred --cchhhHHhcccccccccccccccccceEEEeeccCCC------------eeEEEeccCceEEeecCCh
Confidence 0001111222446788888999999999999998776 3788889999999877654
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=4.1e-16 Score=143.71 Aligned_cols=258 Identities=16% Similarity=0.214 Sum_probs=186.4
Q ss_pred eEEEEEcCCCCEEEee---eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc---eeEEEe---
Q 047837 446 YRSMAVSSRGSTLLLD---AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF---DLIESI--- 516 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~---~~~~~~--- 516 (882)
+..+.+..++..++.. .|.-+++.+-|.|+...... .+||+.+ ..+++|.+.... .+...+
T Consensus 75 vqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p--------dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~ 144 (364)
T KOG0290|consen 75 VQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP--------DLLATSS--DFLRLWRIGDEESRVELQSVLNNN 144 (364)
T ss_pred eEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc--------chhhccc--CeEEEEeccCcCCceehhhhhccC
Confidence 4444444443333322 57889999999998742111 2566655 379999987421 111111
Q ss_pred --ecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcE
Q 047837 517 --DDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKI 592 (882)
Q Consensus 517 --~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v 592 (882)
..+..++++..|+. +-++|.+++-|-+..|||++++... ....+.++|...|+.++|..++. .+|+.+.||.|
T Consensus 145 kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred cccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 23567899999988 7788999999999999999976221 11335677889999999999764 78999999999
Q ss_pred EEEEccCCceEEEEEeccC-CCCcEEEEECC-CCCEEEEEeCC-CcEEEEEccC-CeEEEEEccCCCCeEEEEECCC-CC
Q 047837 593 NSFSIAAGKLIRSFKQAKD-FGDPMKVTVDP-SGSYLVCSYSN-KSICLYDFIS-GEMVAKAMGHGEVITGVTFLPD-CK 667 (882)
Q Consensus 593 ~iwd~~~~~~~~~~~~~~~-~~~v~~~~~sp-dg~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~d-~~ 667 (882)
|+||++..+....+.+... ..+...++|++ |-+|+|+-..| ..|.|.|++. +.++.++++|.+.|++++|.|. ..
T Consensus 222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS 301 (364)
T ss_pred EEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc
Confidence 9999998776555543333 67788999998 55678875544 5799999986 5789999999999999999996 46
Q ss_pred EEEEEeCCCeEEEEeCCCCCC------CcccCCCCCcccEEEecCC-CeEEEeccc
Q 047837 668 HIVSVGGDGLQRVKEKYGILP------PRNFAQPAALSPIIFCEEE-DQKCRMDSV 716 (882)
Q Consensus 668 ~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~s~~~-~~~~~~~~~ 716 (882)
.|.|+|.|..+.+||+..... ...+....+++.+.+++.. ||+....+.
T Consensus 302 hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 899999999999999975433 3445666778888888553 455444433
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.7e-17 Score=156.70 Aligned_cols=199 Identities=21% Similarity=0.221 Sum_probs=154.8
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVR 547 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vw 547 (882)
.+++|+.++. .+++|+.||.+++|++.+. ..+.....|...|.++.|+|||+.|++.+.| ..+||
T Consensus 148 k~vaf~~~gs-------------~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNGDGS-------------KLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcCCCC-------------EeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence 5567777766 8999999999999998776 5666777899999999999999999999999 79999
Q ss_pred eCccCccceeeeccceecccCCceEEEEEecCC-----CEEEEEeCCCcEEEEEccCCce---EEEEEeccCCCCcEEEE
Q 047837 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-----EVVITVGQDKKINSFSIAAGKL---IRSFKQAKDFGDPMKVT 619 (882)
Q Consensus 548 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~ 619 (882)
+++++......... ........+.|+.|+ ..++....-+.|+.||+...+- ++..+.......|++++
T Consensus 213 ~~~~g~~~a~~t~~----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 213 SVNTGAALARKTPF----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred EeccCchhhhcCCc----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 99987544443321 112356677788776 2333333456788777654322 11111113446899999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 620 VDPSGSYLVCSYSNKSICLYDFISGEMVAKAM-GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 620 ~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.|+||+++|.|+.||.|-|++..+.+.++..+ .|...|+.|.|+||.+++++.+.|..+.|..+.-
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999999999988877664 5999999999999999999999999999988764
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=7.7e-16 Score=147.33 Aligned_cols=321 Identities=16% Similarity=0.206 Sum_probs=212.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC------ceeeEEeec-cccceeEEEECCCCCEEEEEc--C
Q 047837 38 MVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN------LAFISELKG-HLYGVECIAFSPDGEHLVTVG--G 108 (882)
Q Consensus 38 l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t------~~~~~~l~~-h~~~V~~lafspdg~~Las~~--~ 108 (882)
+.+|. +-|.++.||.++++||+| |+|..++||+++. .+++..... |...|.||+|.-..+.|.+|+ +
T Consensus 52 ~~~H~--GCiNAlqFS~N~~~L~SG--GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 52 VREHT--GCINALQFSHNDRFLASG--GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhc--cccceeeeccCCeEEeec--CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 45788 899999999999999999 6699999999863 455554443 668999999999999999999 9
Q ss_pred EEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccccc
Q 047837 109 YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQ 187 (882)
Q Consensus 109 ~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 187 (882)
+|+..|+++.+.+..+......+.|..+..+|..+.|++.++ +.|.+||...... |..++.++.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~--------------~~~~~~~AN- 192 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN--------------PISLVLPAN- 192 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC--------------CCceeeecC-
Confidence 999999999999888776655679999999997777777766 8999999875442 222221110
Q ss_pred ccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCC-CEEEEEecCCeEE
Q 047837 188 KESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASS-KLIACACSNGAVH 266 (882)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~dg~I~ 266 (882)
.+ +....+.|+|.. .+|++.+..+-+-
T Consensus 193 -----------------------------------~~-----------------~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 193 -----------------------------------SG-----------------KNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred -----------------------------------CC-----------------ccceeeeecCCCceeEEeccccCCCC
Confidence 00 011567788864 5778888899999
Q ss_pred eeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccc
Q 047837 267 LFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 267 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~ 345 (882)
+||....+. ..+.+...+.++ ......+.+.|+|.|. +++.-...--.+||+.+.
T Consensus 221 ~~D~R~~~~-~~~~~~~~~~L~-------------------~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~---- 276 (609)
T KOG4227|consen 221 VFDRRMQAR-PVYQRSMFKGLP-------------------QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ---- 276 (609)
T ss_pred ceeeccccc-hHHhhhccccCc-------------------ccchhhhheeeCCCCCeehhhhccCCCEEeeeecc----
Confidence 999874321 111111111111 1112234678999986 444333444455666542
Q ss_pred eeeeeec-Ccc-eeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeec-ccCCccceeeecC
Q 047837 346 RCCVLVS-HSA-CIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKD-VLGHESLNIEPMS 422 (882)
Q Consensus 346 ~~~~~~~-~~~-~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~ 422 (882)
++.+++. |.. .-.. ...+.+++|. +...+++|+.+=.|.+|.+.......-+ .+++..-.+
T Consensus 277 R~~V~k~D~N~~GY~N----------~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~---- 340 (609)
T KOG4227|consen 277 RCFVLKSDHNPNGYCN----------IKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM---- 340 (609)
T ss_pred cceeEeccCCCCccee----------eeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhC----
Confidence 2223322 111 1111 1234456665 5556999999999999998754332110 011100000
Q ss_pred CcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEE
Q 047837 423 TAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIH 502 (882)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~ 502 (882)
.-.+--++...++.+|..-+..+.|+|... +|++.+....++
T Consensus 341 -------------------------~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-------------~l~SSGVE~~~K 382 (609)
T KOG4227|consen 341 -------------------------PSEIFIEKELTVLRGHRSVPNQVRFSQHNN-------------LLVSSGVENSFK 382 (609)
T ss_pred -------------------------chhheecceeEEEecccccccceeecCCcc-------------eEeccchhhhee
Confidence 000112456678999999999999999987 899999999999
Q ss_pred EEEcC
Q 047837 503 LYDVK 507 (882)
Q Consensus 503 iwd~~ 507 (882)
||...
T Consensus 383 lWS~~ 387 (609)
T KOG4227|consen 383 LWSDH 387 (609)
T ss_pred ccccc
Confidence 99754
No 187
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.6e-17 Score=177.71 Aligned_cols=253 Identities=17% Similarity=0.245 Sum_probs=188.8
Q ss_pred CCcEEEeecCCCe----EEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 311 PNAIACQFSTSEK----LVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 311 ~~~~~~~~s~~~~----ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
.....++|.+.+. +|+|+. ||.|.+||..... .+.. ...+.....|.+.|..+.|++..+++
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--------~~~~-----~~~la~~~~h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--------ANAS-----EEVLATKSKHTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhc--------cCcc-----hHHHhhhcccCCceeeeeccccCCce
Confidence 3445788887763 466555 9999999986520 1111 11122335577888888888667789
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
||+|+.||.|.+||+...+..... . -..-..
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~--------------------------------------------~-----~~~~~~ 162 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTP--------------------------------------------G-----SQAPPS 162 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCC--------------------------------------------C-----CCCCcc
Confidence 999999999999999864322110 0 012346
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCC--CEEEEEEccCC-CEEEEEeCCC
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSA--AVTAVKFTCNG-RKILSCSADR 542 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~--~v~~~~~s~~~-~~l~s~~~dg 542 (882)
.|.+++|+..-. .+|++++.+|.+.|||++.+ +.+..+..|.. .+..++|+|+. ..|++++.|.
T Consensus 163 eI~~lsWNrkvq------------hILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 163 EIKCLSWNRKVS------------HILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred cceEeccchhhh------------HHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 678888887654 37999999999999999987 55555554443 47899999965 4566666653
Q ss_pred ---eEEEEeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEE
Q 047837 543 ---SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKV 618 (882)
Q Consensus 543 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 618 (882)
.|.+||++......+....| ...|.++.|++.+ ++|++++.|+.|.+|+..+++.+..+. .....+..+
T Consensus 230 ~~PviqlWDlR~assP~k~~~~H-----~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--~~~nW~fdv 302 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFASSPLKILEGH-----QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--AQGNWCFDV 302 (1049)
T ss_pred CCceeEeecccccCCchhhhccc-----ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--CCCcceeee
Confidence 59999998666555555444 4799999999976 899999999999999999999999997 577899999
Q ss_pred EECCCCC-EEEEEeCCCcEEEEEccCCe
Q 047837 619 TVDPSGS-YLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 619 ~~spdg~-~l~~~~~dg~i~iwd~~~~~ 645 (882)
.|+|... .+++++-||.|-||.+..+.
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeecCC
Confidence 9999665 88899999999999997653
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.3e-14 Score=152.92 Aligned_cols=271 Identities=11% Similarity=0.144 Sum_probs=169.6
Q ss_pred ceEEEEEECCC-Cc--eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECC-Ccee--eEEeeccccceeEE
Q 047837 21 GCVLVVYDVDS-ST--QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCA-NLAF--ISELKGHLYGVECI 94 (882)
Q Consensus 21 ~~~v~vwd~~~-~~--~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~-t~~~--~~~l~~h~~~V~~l 94 (882)
++.|.+||+.+ ++ .+..+. +. +....++++||+++|+++.. .++.|.+|++. +++. +.... ..+....+
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~--~~~~~l~~spd~~~lyv~~~-~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VP--GQVQPMVISPDKRHLYVGVR-PEFRVLSYRIADDGALTFAAESP-LPGSPTHI 85 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cC--CCCccEEECCCCCEEEEEEC-CCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence 67899999964 33 333332 33 56888999999999988764 46789999997 3432 22222 33456789
Q ss_pred EECCCCCEEEEEc---CEEEEEEcCc-cee---eeeeecCCcccceeEEEEccCCCEEEEECC--CcEEEEEcccCccce
Q 047837 95 AFSPDGEHLVTVG---GYIYLWNWRS-AML---VMKLKANSSCSAITSACFSSDAKFIVTAGK--KHLKFWTIGSSATAR 165 (882)
Q Consensus 95 afspdg~~Las~~---~~i~iWd~~~-g~~---~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~iwd~~~~~~~~ 165 (882)
+|+|+|++|++++ +.|.+|++.+ +.. +..+... .....++|+|++++++++.. +.|.+||+.+.....
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 9999999999887 8999999964 322 2222221 45678899999999877653 789999997532200
Q ss_pred eccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeee
Q 047837 166 TRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKN 245 (882)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 245 (882)
... .. ... +. . .....
T Consensus 163 ~~~-~~--~~~-----~~-----------------------------------------------~---------g~~p~ 178 (330)
T PRK11028 163 AQE-PA--EVT-----TV-----------------------------------------------E---------GAGPR 178 (330)
T ss_pred ccC-CC--cee-----cC-----------------------------------------------C---------CCCCc
Confidence 000 00 000 00 0 00115
Q ss_pred eEEEecCCCEEEEEec-CCeEEeeeccc--cee--cccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC
Q 047837 246 GFALSASSKLIACACS-NGAVHLFDIQS--LKH--AGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST 320 (882)
Q Consensus 246 ~~~~s~d~~~l~~~~~-dg~I~vwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 320 (882)
.++|+|+|++++++.. ++.|.+|+++. ++. +..+... +... +.......+.++|
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-p~~~--------------------~~~~~~~~i~~~p 237 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-PADF--------------------SDTRWAADIHITP 237 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-CCcC--------------------CCCccceeEEECC
Confidence 7899999999988876 89999999973 221 1111100 0000 0011223588999
Q ss_pred CCeEEEEe-C-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC-CCcEEE
Q 047837 321 SEKLVVVY-G-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA-DGTIRL 397 (882)
Q Consensus 321 ~~~ll~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~-dg~i~v 397 (882)
+++++.++ . ++.|.+|+++...... .+.++... ......++++ +++++|+++.. +++|.+
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~---~~~~~~~~-------------~~~p~~~~~~-~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVL---SFEGHQPT-------------ETQPRGFNID-HSGKYLIAAGQKSHHISV 300 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeE---EEeEEEec-------------cccCCceEEC-CCCCEEEEEEccCCcEEE
Confidence 99855544 3 7899999996542211 11111110 0123456777 78888887765 899999
Q ss_pred EecC
Q 047837 398 WDLA 401 (882)
Q Consensus 398 wd~~ 401 (882)
|+++
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9875
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.9e-15 Score=162.58 Aligned_cols=192 Identities=16% Similarity=0.160 Sum_probs=140.5
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCcc--ceeeeccceeccc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNS--AYKISRRHQQLAS 567 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~ 567 (882)
+|+++|.-..|+|||............+....|+++.-+- .|+.++.|..||.|++||.+.... .....+.|..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~--- 1255 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND--- 1255 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC---
Confidence 4666666789999999876333333344556677776554 579999999999999999986544 2222333321
Q ss_pred CCceEEEEEecCCC-EEEEEeCCCcEEEEEccCCceEEEEEeccCC--C-CcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 568 QGTVYDMDIDPTME-VVITVGQDKKINSFSIAAGKLIRSFKQAKDF--G-DPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 568 ~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
..+|..+.+-+.|- .|++|+.||.|++||++.......+....|. + ..+++..+++...+|+|+. +.|+||++.
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~- 1333 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS- 1333 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-
Confidence 12389999999775 5999999999999999974332222221332 4 5999999999999999998 899999985
Q ss_pred CeEEEEEcc-------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 644 GEMVAKAMG-------HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 644 ~~~~~~~~~-------h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
|+.+..++. ..+.+.+|+|+|-.-+||.|+.|.+|.||......
T Consensus 1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 444444432 23578999999999999999999999999876544
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=145.66 Aligned_cols=251 Identities=12% Similarity=0.078 Sum_probs=177.1
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.|++|. .....+.+|+.+++|.+-|+++.+.+....
T Consensus 104 H~SNIF~L~F~-~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-------------------------------------- 144 (609)
T KOG4227|consen 104 HRSNIFSLEFD-LENRFLYSGERWGTVIKHDIETKQSIYVAN-------------------------------------- 144 (609)
T ss_pred cccceEEEEEc-cCCeeEecCCCcceeEeeecccceeeeeec--------------------------------------
Confidence 55677788887 677788999999999999999876543110
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEE--EeecCCCCEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIE--SIDDHSAAVTAV 526 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~--~~~~h~~~v~~~ 526 (882)
-....+.|..+..+|..+ .+++.+.++.|.+||.+....... .+.........+
T Consensus 145 -----------~~~~~~~VY~m~~~P~DN-------------~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 145 -----------ENNNRGDVYHMDQHPTDN-------------TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA 200 (609)
T ss_pred -----------ccCcccceeecccCCCCc-------------eEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence 011234788888888766 899999999999999987532222 222345567889
Q ss_pred EEccC-CCEEEEEeCCCeEEEEeCccCccceeeeccceeccc-CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCce-E
Q 047837 527 KFTCN-GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS-QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL-I 603 (882)
Q Consensus 527 ~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~ 603 (882)
.|+|. ..+|++.+..+-+-+||++......-.......+.. ...-..+.|+|.|..+++--....-.+||+-+.++ +
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence 99994 556778888888999999854322111011111111 12346788999999998877777778889876443 2
Q ss_pred EEEEecc-----CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC-----C------------------eEEEEEccCCC
Q 047837 604 RSFKQAK-----DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS-----G------------------EMVAKAMGHGE 655 (882)
Q Consensus 604 ~~~~~~~-----~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~-----~------------------~~~~~~~~h~~ 655 (882)
..+. +. ....+.+++|..|-. +++|+.+-.|++|.+.. | +.+..++||.+
T Consensus 281 ~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS 358 (609)
T KOG4227|consen 281 LKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS 358 (609)
T ss_pred Eecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc
Confidence 2332 11 123466788876544 89999999999998842 1 23456889999
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 656 VITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 656 ~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.+..+.|+|...+|++.+....++||.-.
T Consensus 359 v~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 359 VPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cccceeecCCcceEeccchhhheeccccc
Confidence 99999999999999999999999999753
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=7.9e-18 Score=176.10 Aligned_cols=279 Identities=18% Similarity=0.266 Sum_probs=211.0
Q ss_pred eeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeee
Q 047837 356 CIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERN 435 (882)
Q Consensus 356 ~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (882)
-|..+++...+.+|-+.|+|+.|. ..|.++++|+.|..++||..++..++..
T Consensus 176 mvqkmk~ikrLlgH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs--------------------------- 227 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLAS--------------------------- 227 (1113)
T ss_pred HHHHHHHHHHHHhhhhheeeeeec-cccceEeecCccceeeeeeccchhhhcc---------------------------
Confidence 444555566667899999999998 8999999999999999999887665432
Q ss_pred eeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE
Q 047837 436 TMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES 515 (882)
Q Consensus 436 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~ 515 (882)
..+|.+.|+.++.+.... ++++++.|..|++|.+..+ .++..
T Consensus 228 ------------------------~rGhs~ditdlavs~~n~-------------~iaaaS~D~vIrvWrl~~~-~pvsv 269 (1113)
T KOG0644|consen 228 ------------------------CRGHSGDITDLAVSSNNT-------------MIAAASNDKVIRVWRLPDG-APVSV 269 (1113)
T ss_pred ------------------------CCCCccccchhccchhhh-------------hhhhcccCceEEEEecCCC-chHHH
Confidence 568999999999988877 8999999999999999987 88999
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 047837 516 IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSF 595 (882)
Q Consensus 516 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw 595 (882)
+.+|++.|++|+|+|-. +.+.||++++||.+- ................-+..+.|-..+..+++++.|+.-..|
T Consensus 270 LrghtgavtaiafsP~~----sss~dgt~~~wd~r~--~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~ 343 (1113)
T KOG0644|consen 270 LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL--EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNH 343 (1113)
T ss_pred HhccccceeeeccCccc----cCCCCCceEeccccc--cccccCCCCCCcccccceeeeeccccccccccccCCcccccc
Confidence 99999999999999954 778899999999871 111122122222233567778888889999999999998888
Q ss_pred EccCCceEEEEEeccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCC-CCEEEEEe
Q 047837 596 SIAAGKLIRSFKQAKDFGDPMKVTVDPS-GSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD-CKHIVSVG 673 (882)
Q Consensus 596 d~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~ 673 (882)
...-.. .+...+.-+.++.| ..+.+++-.+..+++|++.+|.+++.+.+|...+..|.++|- .+...+++
T Consensus 344 e~~~l~--------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 344 EFEQLA--------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred hhhHhh--------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 765211 11111222222222 256777778889999999999999999999999999999995 45667899
Q ss_pred CCCeEEEEeCCCCCCCcccCC-CCCcccEEEecCCCeEEEec
Q 047837 674 GDGLQRVKEKYGILPPRNFAQ-PAALSPIIFCEEEDQKCRMD 714 (882)
Q Consensus 674 ~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~ 714 (882)
.||.+.|||+-.+.+.+.+.. ......-.||+++...+.-+
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence 999999999988877766532 23333445666655444333
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=6.8e-14 Score=146.00 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=97.5
Q ss_pred ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCC
Q 047837 21 GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDG 100 (882)
Q Consensus 21 ~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg 100 (882)
++.|.|.|.++.+.+..+.... ..-..++|+|||+++++++. |+.|.++|+.+++.+.+++... .-..+++|+||
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~Dgr~~yv~~r--dg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG 89 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG--APHAGLKFSPDGRYLYVANR--DGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDG 89 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT-SSEEEEEET--TSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TT
T ss_pred CCEEEEEECCCCeEEEEEcCCC--CceeEEEecCCCCEEEEEcC--CCeEEEEECCcccEEEEEecCC-CcceEEEcCCC
Confidence 5799999999999999886654 33455789999999999965 8899999999999999998544 45789999999
Q ss_pred CEEEEEc---CEEEEEEcCcceeeeeeecCCc-----ccceeEEEEccCCCEEEEE-CC-CcEEEEEccc
Q 047837 101 EHLVTVG---GYIYLWNWRSAMLVMKLKANSS-----CSAITSACFSSDAKFIVTA-GK-KHLKFWTIGS 160 (882)
Q Consensus 101 ~~Las~~---~~i~iWd~~~g~~~~~~~~~~~-----~~~v~~l~fs~d~~~l~~~-~~-~~i~iwd~~~ 160 (882)
++|+++. +.+.|+|.++.++++.+..... ..++.++..+|....++.. -+ +.|.+-|...
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999887 9999999999999998875431 2467888889988855554 44 5666666544
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.3e-15 Score=160.57 Aligned_cols=280 Identities=16% Similarity=0.190 Sum_probs=202.7
Q ss_pred ceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecc
Q 047837 331 HSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDV 410 (882)
Q Consensus 331 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 410 (882)
+.+.+|++....... ..+. -...|+|+.|+|.+..+++.|..+|.|.+||+..+....
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~~-----------------~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--- 279 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVLE-----------------SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--- 279 (555)
T ss_pred ceEEEEecCCCCCce--EEEe-----------------cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---
Confidence 478999998763222 1111 256789999998899999999999999999998765421
Q ss_pred cCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCce
Q 047837 411 LGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHY 490 (882)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 490 (882)
+.+.......|..++..+.|..+.. +.
T Consensus 280 ------------------------------------------~s~ls~~~~sh~~~v~~vvW~~~~~-----------~~ 306 (555)
T KOG1587|consen 280 ------------------------------------------PSGLSALEVSHSEPVTAVVWLQNEH-----------NT 306 (555)
T ss_pred ------------------------------------------CcccccccccCCcCeEEEEEeccCC-----------CC
Confidence 0111122447889999999987654 12
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEE-----ee------cCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccce-e
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIES-----ID------DHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAY-K 557 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~-----~~------~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~-~ 557 (882)
-+++++.||.|..|+++.-..+... .. .....+++++|.+ +-..++.|+.+|.|.--......... .
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 4888889999999988742121111 11 1234688999988 66778999999988873333222211 2
Q ss_pred eeccc-eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc-CCceEEEEEeccCCCCcEEEEECCCC-CEEEEEeCCC
Q 047837 558 ISRRH-QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA-AGKLIRSFKQAKDFGDPMKVTVDPSG-SYLVCSYSNK 634 (882)
Q Consensus 558 ~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~dg 634 (882)
....+ ....|.++|+.+.++|=+..++..+.|.+++||... ...++..+. .+...+++++|||-. ..+|++..||
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCcCceEEEEEcCCC
Confidence 22222 445677899999999988766655669999999988 666777766 667779999999965 4677888899
Q ss_pred cEEEEEccCC--eEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 635 SICLYDFISG--EMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 635 ~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
.|.+||+... .++....-+....+.+.|++.|+.|+.|...|.+.+|++....
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 9999999643 4555555566777888899999999999999999999997543
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=5.4e-17 Score=169.96 Aligned_cols=116 Identities=21% Similarity=0.462 Sum_probs=106.0
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEE
Q 047837 35 SHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYL 112 (882)
Q Consensus 35 ~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~i 112 (882)
+..|.||. ..|.|++|...|++|.+|+. |..++||..+++.++...+||.+.|+.++.+.+..++|+++ ..|++
T Consensus 183 ikrLlgH~--naVyca~fDrtg~~Iitgsd--d~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 183 IKRLLGHR--NAVYCAIFDRTGRYIITGSD--DRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHhhh--hheeeeeeccccceEeecCc--cceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 34567898 89999999999999999965 88999999999999999999999999999999999999999 78999
Q ss_pred EEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcc
Q 047837 113 WNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 113 Wd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~ 159 (882)
|.+.+|.++..+.+|. +.|++++|+|-. .+..+|++++||..
T Consensus 259 Wrl~~~~pvsvLrght--gavtaiafsP~~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHT--GAVTAIAFSPRA---SSSDDGTCRIWDAR 300 (1113)
T ss_pred EecCCCchHHHHhccc--cceeeeccCccc---cCCCCCceEecccc
Confidence 9999999999999998 999999999965 44456999999986
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.2e-16 Score=160.90 Aligned_cols=277 Identities=19% Similarity=0.262 Sum_probs=187.9
Q ss_pred cCCCCCCcEEEeecCCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc
Q 047837 306 LTPTIPNAIACQFSTSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV 384 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~ 384 (882)
+..+...+..++|.+-. .+++++.||.|.+|+++... ...-..+..+-.+.+|.++|.|+++. .+++
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----------~s~~~~~epi~tfraH~gPVl~v~v~-~n~~ 357 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----------KSAEKDVEPILTFRAHEGPVLCVVVP-SNGE 357 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----------CccccceeeeEEEecccCceEEEEec-CCce
Confidence 44566667788888875 57788889999999994311 11111222222345677778888887 8999
Q ss_pred EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc
Q 047837 385 SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD 464 (882)
Q Consensus 385 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 464 (882)
.+.+|+.||+|+.|++......... + .|.--.-.+.+|.
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds---~--------------------------------------dp~vl~~~l~Ght 396 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDS---Y--------------------------------------DPSVLSGTLLGHT 396 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccc---c--------------------------------------Ccchhccceeccc
Confidence 9999999999999988632211000 0 0000012367999
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCC--CCEEEEEEccCCCEEEEEeCCC
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHS--AAVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg 542 (882)
+.|+.++++.... .|++++.||++++|+.... .+ .++.... ..-.++.+-. ..++-...+.
T Consensus 397 davw~l~~s~~~~-------------~Llscs~DgTvr~w~~~~~-~~-~~f~~~~e~g~Plsvd~~s--s~~a~~~~s~ 459 (577)
T KOG0642|consen 397 DAVWLLALSSTKD-------------RLLSCSSDGTVRLWEPTEE-SP-CTFGEPKEHGYPLSVDRTS--SRPAHSLASF 459 (577)
T ss_pred cceeeeeeccccc-------------ceeeecCCceEEeeccCCc-Cc-cccCCccccCCcceEeecc--chhHhhhhhc
Confidence 9999999999887 8999999999999998765 22 3333222 2234455532 2222222223
Q ss_pred eEEEEeCccCcccee--eeccce--ecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEE
Q 047837 543 SLVVRDVVETNSAYK--ISRRHQ--QLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKV 618 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~--~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 618 (882)
....+++...+.... +..... .......+..+.++|.+.+.+++..|+.|+++|..+++.+.... .|...++++
T Consensus 460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--a~~~svtsl 537 (577)
T KOG0642|consen 460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--AHKDSVTSL 537 (577)
T ss_pred ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee--eccceecce
Confidence 333333332221111 111110 01112467888999999999999999999999999999999988 899999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC
Q 047837 619 TVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG 654 (882)
Q Consensus 619 ~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 654 (882)
++.|+|.+|++++.|+.+++|.+....++.....|.
T Consensus 538 ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999999999999999998887777666554
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3e-16 Score=154.98 Aligned_cols=307 Identities=16% Similarity=0.208 Sum_probs=223.0
Q ss_pred cccccCCCCCCcEEEeecCCCeEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeecc
Q 047837 302 LYFKLTPTIPNAIACQFSTSEKLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC 380 (882)
Q Consensus 302 ~~~~~~~~~~~~~~~~~s~~~~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~ 380 (882)
++..+.++.+.+..+.|...|..++. +.|..|.+||....... .....||...|...+|++.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~--------------- 196 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPF--------------- 196 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCC---------------
Confidence 34567788888999999999986654 55899999999776532 2234456665555555422
Q ss_pred CCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEe
Q 047837 381 TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLL 460 (882)
Q Consensus 381 ~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 460 (882)
.+...+++++.||.+++=.+....... ....+
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e------------------------------------------------~t~rl 228 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVE------------------------------------------------NTKRL 228 (559)
T ss_pred CCCcCceeccccCceeeeeecccccee------------------------------------------------cceec
Confidence 355679999999999987665332211 12235
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--eeEEEeecCCC---CEEEEEEccCC-CE
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--DLIESIDDHSA---AVTAVKFTCNG-RK 534 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--~~~~~~~~h~~---~v~~~~~s~~~-~~ 534 (882)
..|.+.|..++.-|... +-+.+++.|+.+.-+|++.+. ..+.....+.. ....++..|.. ..
T Consensus 229 ~~h~g~vhklav~p~sp------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSP------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccCccceeeecCCCC------------CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 67899999999988876 368999999999999998742 11222233333 46788999854 48
Q ss_pred EEEEeCCCeEEEEeCccCccc------eeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC--C------
Q 047837 535 ILSCSADRSLVVRDVVETNSA------YKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA--G------ 600 (882)
Q Consensus 535 l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~--~------ 600 (882)
+++++.|-.+++||.+.-... .++...|........|++++|+.++.-|++.-.|-.|+++.-.- |
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 999999999999998753322 23333333333445799999998888777778888999995332 2
Q ss_pred ----ceEEE-EEeccCCCCcEEEE-ECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 601 ----KLIRS-FKQAKDFGDPMKVT-VDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 601 ----~~~~~-~~~~~~~~~v~~~~-~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
..++. ++.|.....|..+- |-|...|+++|++-|.|.||+-.+++.+..+.+-..-|+||.=+|--..||+.|-
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi 456 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI 456 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC
Confidence 22333 56333344566665 5788999999999999999999999999999886679999999999999999999
Q ss_pred CCeEEEEeCCC
Q 047837 675 DGLQRVKEKYG 685 (882)
Q Consensus 675 dg~i~vwd~~~ 685 (882)
|..||||-..+
T Consensus 457 d~DVKIWTP~~ 467 (559)
T KOG1334|consen 457 DHDVKIWTPLT 467 (559)
T ss_pred ccceeeecCCc
Confidence 99999998644
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=6.3e-17 Score=158.62 Aligned_cols=284 Identities=15% Similarity=0.138 Sum_probs=214.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
.++.|+..|.|..+|..++ .+...+. -...|.++.|-.+.+++|++- ...++|||-... .. .....+ ..
T Consensus 143 hlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt-El-HClk~~------~~ 211 (545)
T KOG1272|consen 143 HLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT-EL-HCLKRH------IR 211 (545)
T ss_pred EEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCc-EE-eehhhc------Cc
Confidence 8999999999999999986 5555554 456789999998888877765 466999997622 22 222222 48
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~ 650 (882)
|..+.|-|..-+|++++..|.++.-|+.+|+.+..+. ...+.+..|+-+|-.-.+-+|...|+|.+|.....+++..+
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~--t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR--TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhhhHHHH--ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 9999999999999999999999999999999999987 66788889999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEecccccccccCcCcC-CC
Q 047837 651 MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQI-GP 729 (882)
Q Consensus 651 ~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~ 729 (882)
..|.++|.+|++.++|+|++|+|.|..++|||++....+.++..+.+...+.||..+--.+...+.-..|....... ..
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~ 369 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHG 369 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCC
Confidence 99999999999999999999999999999999999999888888888888888877655444443333332222211 12
Q ss_pred cccccee-cCCceeeEEEecCCchhhhhccccccccccCCcccccccccccccCCCcccCCCCCCCCceeecCCCC
Q 047837 730 HLHYHGV-KPHLTSAFKFSISRLPKWAQKKVTDSEIVPGNLDFSLSQEVEKKSLSPFVGDVGGYSPESQEVQIPSN 804 (882)
Q Consensus 730 ~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 804 (882)
...|..+ +++.+.-+.|..-++ .+-+.-..+.-....|.+|+-..++...+++.+.+|
T Consensus 370 ~~pYm~H~~~~~V~~l~FcP~ED-----------------vLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQ 428 (545)
T KOG1272|consen 370 ETPYMNHRCGGPVEDLRFCPYED-----------------VLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQ 428 (545)
T ss_pred CcchhhhccCcccccceeccHHH-----------------eeeccccCCceeEeccCCCCCCcchhccCcchhhhH
Confidence 2333322 334444445532222 233344445555567888888777777777776654
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.9e-15 Score=132.15 Aligned_cols=206 Identities=14% Similarity=0.152 Sum_probs=157.8
Q ss_pred EEEEEcCCCcEEEEEcCC---------CceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce-----
Q 047837 491 FLASGGRDRTIHLYDVKR---------NFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY----- 556 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~---------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~----- 556 (882)
+++.|+.+|.|.++.+.+ ++..+...++|..+|..++|. ..+|++++ ||.|+-|..+......
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhh
Confidence 999999999999998864 334455668999999999997 44666665 5999999876433211
Q ss_pred -eee-ccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC
Q 047837 557 -KIS-RRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK 634 (882)
Q Consensus 557 -~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg 634 (882)
+.. +.+.....-..|+++...|...-++.++.|+.++-||+++|+..++++ +|.+.+.+++--.....+.+|++||
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--GHtDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--GHTDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--CCcceeeeeeecccCcceeecCCCc
Confidence 111 111111223478999999988888888899999999999999999999 9999999999856566788999999
Q ss_pred cEEEEEccCCeEEEEEccC---------C-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEe
Q 047837 635 SICLYDFISGEMVAKAMGH---------G-EVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFC 704 (882)
Q Consensus 635 ~i~iwd~~~~~~~~~~~~h---------~-~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s 704 (882)
++||||.++++.+..+... . ..|-+++- +..+|+.|+ .-.+.+|.++...+...+.-+..+..+.|.
T Consensus 179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~ 255 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV 255 (325)
T ss_pred cEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeee
Confidence 9999999999988776432 1 23555554 455787555 467899999999998888888877766664
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.1e-14 Score=156.84 Aligned_cols=200 Identities=20% Similarity=0.252 Sum_probs=137.9
Q ss_pred CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC
Q 047837 322 EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 322 ~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~ 401 (882)
|.|++++.-..|+|||.+....... +..+ .+..|+++.-+...|+.++.|..||.|++||.+
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~d--iP~~----------------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVAD--IPYG----------------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEee--cccC----------------CCccceeecccccCCceEEEeecCCceEEeecc
Confidence 5666666677888888865432111 1111 233444554444568999999999999999987
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce--EEEEEEecCCCCC
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE--ILSLSFSLSSKKD 479 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--v~~~~~~~~~~~~ 479 (882)
.... +....++..|+.. |..+.+.+.|-
T Consensus 1240 ~a~~------------------------------------------------ds~v~~~R~h~~~~~Iv~~slq~~G~-- 1269 (1387)
T KOG1517|consen 1240 MAPP------------------------------------------------DSLVCVYREHNDVEPIVHLSLQRQGL-- 1269 (1387)
T ss_pred cCCc------------------------------------------------cccceeecccCCcccceeEEeecCCC--
Confidence 5432 2234456677777 88888888664
Q ss_pred ccceeccCCceEEEEEcCCCcEEEEEcCCC-ceeEEEeecCC--C-CEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc
Q 047837 480 DVLEEVTDSHYFLASGGRDRTIHLYDVKRN-FDLIESIDDHS--A-AVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA 555 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~h~--~-~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 555 (882)
.-|++|+.+|.|++||++.. .........|. + ..+++..+++...+|+|+. +.|+||++... ..
T Consensus 1270 ----------~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l 1337 (1387)
T KOG1517|consen 1270 ----------GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QL 1337 (1387)
T ss_pred ----------cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hh
Confidence 14999999999999999873 12222233333 3 5999999999999999998 89999999733 22
Q ss_pred eeeeccceec-ccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc
Q 047837 556 YKISRRHQQL-ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 556 ~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~ 601 (882)
..+......+ ...+.+.|++|+|-.-++|+|..|.+|.||....+.
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 2221111111 123578999999999999999999999999876543
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=5e-14 Score=134.96 Aligned_cols=187 Identities=12% Similarity=0.198 Sum_probs=145.2
Q ss_pred EEEEEcC--CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGR--DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~--dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
++|..+. .+.++++++..+ ..+..+. ....|.++.++ .++|+++=.+. |+|||++.-+....+... ..+.
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~-~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~---~~n~ 129 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKK-TTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETT---PPNP 129 (391)
T ss_pred eeEEEecCCCceEEEEEcccC-ceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhcc---CCCc
Confidence 4444433 345889998765 4444444 45679999995 45777766655 999999865544443322 1233
Q ss_pred CceEEEEEecCCCEEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCc-EEEEEccCCe
Q 047837 569 GTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKS-ICLYDFISGE 645 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~-i~iwd~~~~~ 645 (882)
..+.++++++.+.+++.-+ ..|.|.+||+.+-+.+..+. .|.+.+.+++|+++|.+||++++.|+ |||+.+.+|+
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence 4577777777777888654 35899999999999999998 99999999999999999999999985 7999999999
Q ss_pred EEEEEccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 646 MVAKAMGH--GEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 646 ~~~~~~~h--~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
.+.+|+-- ...|.+|+|+||+++|...|..++|.+|.++...
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99998743 3467899999999999999999999999997655
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.5e-14 Score=128.62 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=176.4
Q ss_pred cceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 373 v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
|.+-+|+ |.+++|+.|..+|.|.+..+.+-..-.. -
T Consensus 13 vf~qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa-------------------------------------------~ 48 (325)
T KOG0649|consen 13 VFAQAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------------------------------------E 48 (325)
T ss_pred HHHHhhC-CcceEEEEecCCCeEEEEEehhhhcccc-------------------------------------------C
Confidence 4444566 7889999999999999999874321100 0
Q ss_pred CCCC--EEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeE-------EEeecCC---
Q 047837 453 SRGS--TLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLI-------ESIDDHS--- 520 (882)
Q Consensus 453 ~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~-------~~~~~h~--- 520 (882)
+.|+ .+...+|+++|+.++|..+ +|++|+. |.|+-|..+...+.. ...+.|.
T Consensus 49 ~~gk~~iv~eqahdgpiy~~~f~d~---------------~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~ 112 (325)
T KOG0649|consen 49 PPGKLKIVPEQAHDGPIYYLAFHDD---------------FLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAV 112 (325)
T ss_pred CCCCcceeeccccCCCeeeeeeehh---------------heeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcc
Confidence 1111 2234799999999999954 5777665 999999876531100 0111122
Q ss_pred --CCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc
Q 047837 521 --AAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 521 --~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 598 (882)
..|+++...|..+-++.++.|+.++-||+++++... ..+. |.+.+.+++--.....+++|++||++|+||++
T Consensus 113 evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-~~rG-----HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-EYRG-----HTDYVHSVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-EEcC-----CcceeeeeeecccCcceeecCCCccEEEEecc
Confidence 358899999988888888899999999999775433 3333 44788899886667789999999999999999
Q ss_pred CCceEEEEEeccCCC--------CcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEE
Q 047837 599 AGKLIRSFKQAKDFG--------DPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIV 670 (882)
Q Consensus 599 ~~~~~~~~~~~~~~~--------~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 670 (882)
+++.+..+....+.. .| .+..-+..+|++|+. ..+.+|+++..++...+. -..+|..+.|-. +.++
T Consensus 187 t~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl 260 (325)
T KOG0649|consen 187 TQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVL 260 (325)
T ss_pred ccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeec--ceEE
Confidence 999999886433322 23 344445678888864 479999999998888776 567788888954 4678
Q ss_pred EEeCCCeEEEEeCCCCCCC
Q 047837 671 SVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 671 s~~~dg~i~vwd~~~~~~~ 689 (882)
+++..+.|.-|.+.+....
T Consensus 261 ~~G~g~~v~~~~l~Gvl~a 279 (325)
T KOG0649|consen 261 IGGEGNHVQSYTLNGVLQA 279 (325)
T ss_pred EeccccceeeeeeccEEEE
Confidence 8888889999988765433
No 202
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.9e-13 Score=136.94 Aligned_cols=150 Identities=15% Similarity=0.312 Sum_probs=108.5
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE--eCCCeEEEEeCccCccceeeeccceecccCCceEEEEE
Q 047837 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC--SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDI 576 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 576 (882)
.++++++++ +....-.+. ..++|.++.|+|+++.++++ -.-..+.|+|++ +.....+. .++-+++-|
T Consensus 251 q~Lyll~t~-g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--------egpRN~~~f 319 (566)
T KOG2315|consen 251 QTLYLLATQ-GESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--------EGPRNTAFF 319 (566)
T ss_pred ceEEEEEec-CceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--------CCCccceEE
Confidence 456666665 223332332 47899999999999887754 456789999987 22222221 256778999
Q ss_pred ecCCCEEEEEeCC---CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC------CCcEEEEEccCCeEE
Q 047837 577 DPTMEVVITVGQD---KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS------NKSICLYDFISGEMV 647 (882)
Q Consensus 577 sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------dg~i~iwd~~~~~~~ 647 (882)
+|.|++++.++.+ |.|.+||+.+.+++..+. ...-+-+.|+|||++++++.. |+.++||+. +|..+
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 9999999998865 689999999988888876 234567899999999998864 788999997 67776
Q ss_pred EEEccCCCCeEEEEECCC
Q 047837 648 AKAMGHGEVITGVTFLPD 665 (882)
Q Consensus 648 ~~~~~h~~~v~~l~~s~d 665 (882)
+...-. +....+.|-|-
T Consensus 395 ~~~~f~-sEL~qv~W~P~ 411 (566)
T KOG2315|consen 395 HEKMFK-SELLQVEWRPF 411 (566)
T ss_pred ehhhhh-HhHhheeeeec
Confidence 654322 25677788653
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=6.1e-15 Score=147.19 Aligned_cols=265 Identities=15% Similarity=0.226 Sum_probs=182.2
Q ss_pred EEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCC
Q 047837 314 IACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADG 393 (882)
Q Consensus 314 ~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg 393 (882)
-++.|+.....+.++.|..+.+|.--....... +.-..+-+....++.... ..+ ....+.|+.++.||
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~---~~~p~df~pt~~h~~~rs-~~~--------g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV---AKLPDDFVPTDMHLGGRS-SGG--------GKGSDTLLICSNDG 85 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhh---hhCCcccCCccccccccc-cCC--------CCCcceEEEEcCCc
Confidence 377888888888888888887776543332221 111111111111100000 000 02345688888999
Q ss_pred cEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEe
Q 047837 394 TIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFS 473 (882)
Q Consensus 394 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~ 473 (882)
.+.+.+-...-+ ..+.+|.+.+.+-.|+
T Consensus 86 kf~il~k~~rVE----------------------------------------------------~sv~AH~~A~~~gRW~ 113 (737)
T KOG1524|consen 86 RFVILNKSARVE----------------------------------------------------RSISAHAAAISSGRWS 113 (737)
T ss_pred eEEEecccchhh----------------------------------------------------hhhhhhhhhhhhcccC
Confidence 988876432111 1256899999999999
Q ss_pred cCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc
Q 047837 474 LSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
|+|. -|+++++||.|++|.-.. .+..++.....+|.|++|.|+.+.++.+..+ .+.+=.+....
T Consensus 114 ~dGt-------------gLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~ 177 (737)
T KOG1524|consen 114 PDGA-------------GLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANS 177 (737)
T ss_pred CCCc-------------eeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeeccccc
Confidence 9998 899999999999998542 3334455567889999999988877766543 46665554333
Q ss_pred cceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN 633 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 633 (882)
...+ -.+|.+-|.++.|++....+++|++|-..++||.. |..+..-. .|..+|++++|.|| +.++.++.+
T Consensus 178 k~i~------WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~--~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 178 KIIR------WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA--AEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred ceeE------EeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC--hhccceeeeeeccc-cceeeeeee
Confidence 3322 24567899999999999999999999999999976 55555544 78999999999999 666666543
Q ss_pred CcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 047837 634 KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV 680 (882)
Q Consensus 634 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~v 680 (882)
++|+ -....+.|..++||+||..++.|...|.+.+
T Consensus 248 -t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 248 -TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 4441 1225678999999999999999988886654
No 204
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=2.7e-14 Score=131.91 Aligned_cols=195 Identities=12% Similarity=0.146 Sum_probs=149.6
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC--ceeEEEeecCCCCEEEEEEccCC-CEEEEE
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN--FDLIESIDDHSAAVTAVKFTCNG-RKILSC 538 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~ 538 (882)
.+..+++++.|+.-.. +++.+.+-|.+..|||++++ ......+..|...|.+|+|...+ ..+|++
T Consensus 148 ~~~aPlTSFDWne~dp------------~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDP------------NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred ccCCcccccccccCCc------------ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe
Confidence 4566888888887655 38999999999999999985 23456778899999999999855 468899
Q ss_pred eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCC-cEEEEEccC-CceEEEEEeccCCCCc
Q 047837 539 SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDK-KINSFSIAA-GKLIRSFKQAKDFGDP 615 (882)
Q Consensus 539 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~-~v~iwd~~~-~~~~~~~~~~~~~~~v 615 (882)
+.||.+++||++..+....+.... ....+...++|+++. +++|+-..|. .|.+.|++. ...+..++ +|.+.|
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p---~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~--~H~a~V 290 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDP---SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR--NHQASV 290 (364)
T ss_pred cCCCcEEEEEecccccceEEecCC---CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh--cCcccc
Confidence 999999999999665443332222 123578889998854 5777776664 799999985 45677777 999999
Q ss_pred EEEEECCC-CCEEEEEeCCCcEEEEEccCCe------EEEEEccCCCCeEEEEECC-CCCEEEEEeC
Q 047837 616 MKVTVDPS-GSYLVCSYSNKSICLYDFISGE------MVAKAMGHGEVITGVTFLP-DCKHIVSVGG 674 (882)
Q Consensus 616 ~~~~~spd-g~~l~~~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~ 674 (882)
+.++|.|. ...|+++++|.++-|||+.+.- ++..+. -.+.|..+.|++ .+.+++.+..
T Consensus 291 NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 291 NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 99999994 6789999999999999997531 222333 457899999995 4567776654
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.8e-15 Score=141.71 Aligned_cols=199 Identities=16% Similarity=0.259 Sum_probs=159.3
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC--NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
.+|++...|.|++||..++ +.+..++++...+..+.|.. ....+.+++.||+|++||++......++...... .
T Consensus 42 ~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---~ 117 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---G 117 (376)
T ss_pred eEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC---C
Confidence 6899999999999999986 78899999999999999987 4678899999999999999977666555433321 2
Q ss_pred CceEEEEEecCCCEEEEEeC----CCcEEEEEccCCce-EEEEEeccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 047837 569 GTVYDMDIDPTMEVVITVGQ----DKKINSFSIAAGKL-IRSFKQAKDFGDPMKVTVDP-SGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~ 642 (882)
.+..+++....++.+++|.. +-.|.+||++..+. ++.+. ..|...|+++.|+| +-.+|++|+.||.|.|||++
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 46677777777888888763 56899999998876 66665 47999999999999 56799999999999999997
Q ss_pred CCe---EEEEEccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCCCCcccCC
Q 047837 643 SGE---MVAKAMGHGEVITGVTFLPDC-KHIVSVGGDGLQRVKEKYGILPPRNFAQ 694 (882)
Q Consensus 643 ~~~---~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 694 (882)
... .+...-.|...|..+.|..++ +.|.+-+.+++..+|+++.+.....+..
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 542 222333477889999999887 4588888999999999998775544433
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=1.3e-14 Score=145.21 Aligned_cols=163 Identities=20% Similarity=0.355 Sum_probs=123.2
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE--ccCCCEEEEEeCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF--TCNGRKILSCSAD 541 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~~~d 541 (882)
...|+++.|-|... ..++.+-.+|.+++||..- ....+...| .+++..++....-
T Consensus 219 ktsvT~ikWvpg~~------------~~Fl~a~~sGnlyly~~~~-----------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSD------------SLFLVAHASGNLYLYDKEI-----------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred ccceEEEEEEeCCC------------ceEEEEEecCceEEeeccc-----------cccCCCCcccccCCCCeeEEeeee
Confidence 36789999998776 2677778889999998621 111122222 2355555433221
Q ss_pred CeEEEEeCccC-ccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEE
Q 047837 542 RSLVVRDVVET-NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTV 620 (882)
Q Consensus 542 g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 620 (882)
+ ... ....+... ..+.|..++|+|||++||+.++||.+||||..+.+++..++ ...+...|++|
T Consensus 276 s-------k~~rNPv~~w~~------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcW 340 (636)
T KOG2394|consen 276 S-------KKTRNPVARWHI------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCW 340 (636)
T ss_pred c-------cccCCccceeEe------ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEE
Confidence 1 100 11111111 12488999999999999999999999999999988887776 67789999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECC
Q 047837 621 DPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP 664 (882)
Q Consensus 621 spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 664 (882)
||||+||++|++|--|.||.+..++++..-++|.+.|..++|.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999999999999999999984
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=6.3e-14 Score=140.08 Aligned_cols=139 Identities=15% Similarity=0.308 Sum_probs=117.6
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEE
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECI 94 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~l 94 (882)
+++..+++.+.|.+ +.++..+....|. +.|.|-.|+|||.-|.++ |.||.|+||.. +|-+..++.....+|.|+
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~--~A~~~gRW~~dGtgLlt~--GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHA--AAISSGRWSPDGAGLLTA--GEDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhh--hhhhhcccCCCCceeeee--cCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 35555677888887 5577777788999 899999999999999998 66999999995 666666677788899999
Q ss_pred EECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCC-cEEEEEcccC
Q 047837 95 AFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKK-HLKFWTIGSS 161 (882)
Q Consensus 95 afspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~-~i~iwd~~~~ 161 (882)
+|.|+..-++.+. +.+.|=-+.-...+-+.+.|. +-|.++.|++.+++++++|++ ..++||-...
T Consensus 152 ~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHD--GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~ 218 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHD--GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA 218 (737)
T ss_pred EECCCCCceEEecCCeEEEeecccccceeEEeccC--cEEEEeecCccccceeecCCceeEEeecccCc
Confidence 9999988777776 999999988888888888887 999999999999999999986 6999997544
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.8e-14 Score=144.27 Aligned_cols=122 Identities=15% Similarity=0.326 Sum_probs=99.9
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEee-ccccceeEEEECC--CCCEEEEEc--C
Q 047837 34 QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK-GHLYGVECIAFSP--DGEHLVTVG--G 108 (882)
Q Consensus 34 ~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~-~h~~~V~~lafsp--dg~~Las~~--~ 108 (882)
+...|+||. +-|.|++|+.||.+||+|+. |-.+.|||....++++.+. ||...|-++.|-| +.+.+++|. .
T Consensus 42 lE~eL~GH~--GCVN~LeWn~dG~lL~SGSD--D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 42 LEAELTGHT--GCVNCLEWNADGELLASGSD--DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhhcccc--ceecceeecCCCCEEeecCC--cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 445788999 99999999999999999965 8899999999999998875 7999999999999 566777776 8
Q ss_pred EEEEEEcCcc----------eeeeeeecCCcccceeEEEEccCC-CEEEEECC-CcEEEEEcccC
Q 047837 109 YIYLWNWRSA----------MLVMKLKANSSCSAITSACFSSDA-KFIVTAGK-KHLKFWTIGSS 161 (882)
Q Consensus 109 ~i~iWd~~~g----------~~~~~~~~~~~~~~v~~l~fs~d~-~~l~~~~~-~~i~iwd~~~~ 161 (882)
.|+++|+..- +.+.....|. ..|..++-.|++ ..+.++++ |+++-+|+...
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht--~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHT--DRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhh--hhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9999999842 2333344444 789999999988 56666665 89999999754
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=5.2e-14 Score=150.37 Aligned_cols=262 Identities=16% Similarity=0.157 Sum_probs=171.3
Q ss_pred CCCCcEEEeecCCCe-EEEEe-CCceEEEEEccccccc--ce-eeeeecCcceeeeecccCCCCCCCCCcceeeecc-CC
Q 047837 309 TIPNAIACQFSTSEK-LVVVY-GDHSLYVWDIHDVNEA--TR-CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC-TG 382 (882)
Q Consensus 309 ~~~~~~~~~~s~~~~-ll~~~-~d~~i~iwd~~~~~~~--~~-~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~-~~ 382 (882)
....+.++.|+|... +++|| .+|+|.+||+...... .. .... ..|..++..+.|.. ..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~----------------~sh~~~v~~vvW~~~~~ 304 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE----------------VSHSEPVTAVVWLQNEH 304 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc----------------ccCCcCeEEEEEeccCC
Confidence 345678999999864 55554 4999999999776542 11 1112 23555566666541 11
Q ss_pred CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 462 (882)
..-|++++.||.|..|+++.-....+......... .+ .-..
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~------------------------------------~~---~~~~ 345 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH------------------------------------KG---QQSS 345 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccc------------------------------------cc---cccc
Confidence 24589999999999998765433211110000000 00 0011
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC---Cc----eeEEEeecCCCCEEEEEEccCCCEE
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR---NF----DLIESIDDHSAAVTAVKFTCNGRKI 535 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~---~~----~~~~~~~~h~~~v~~~~~s~~~~~l 535 (882)
....+++++|.+... +.++.|++.|.|.--+... .. +.+..+..|.+.|.++.++|=+..+
T Consensus 346 ~~~~~t~~~F~~~~p------------~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDP------------NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred cccceeeEeeccCCC------------ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence 234567788887665 3789999999888733222 21 2244566788999999999977666
Q ss_pred EEEeCCCeEEEEeCc-cCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEEccCCceEEEEEeccCCC
Q 047837 536 LSCSADRSLVVRDVV-ETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
+..+.|.+++||.-. .......... +...+++++|||... .++++..||.+.+||+.....-.......+..
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~~~~~------~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~ 487 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLLSLDS------SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP 487 (555)
T ss_pred eeeeccceeEeccccCCCCcchhhhh------ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc
Confidence 666669999999877 3222222221 224699999999765 67777889999999997654333322224456
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
..+.+.|+++|+.|++|...|.+.+|++..
T Consensus 488 ~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 488 ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 677888999999999999999999999964
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.4e-15 Score=144.32 Aligned_cols=201 Identities=18% Similarity=0.274 Sum_probs=153.2
Q ss_pred ceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcC
Q 047837 374 SCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSS 453 (882)
Q Consensus 374 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 453 (882)
.+++|+ .+|..+++++.||++|+|+......+.
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l---------------------------------------------- 180 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTIL---------------------------------------------- 180 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhh----------------------------------------------
Confidence 567777 889999999999999999965443321
Q ss_pred CCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee--cCCCCEEEEEEccC
Q 047837 454 RGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID--DHSAAVTAVKFTCN 531 (882)
Q Consensus 454 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~ 531 (882)
....|.+.|.++.|+|+++ +|++-+.| ..+||+.+++ ..+.... ........+.|+.|
T Consensus 181 -----~e~~~~~eV~DL~FS~dgk-------------~lasig~d-~~~VW~~~~g-~~~a~~t~~~k~~~~~~cRF~~d 240 (398)
T KOG0771|consen 181 -----EEIAHHAEVKDLDFSPDGK-------------FLASIGAD-SARVWSVNTG-AALARKTPFSKDEMFSSCRFSVD 240 (398)
T ss_pred -----hhHhhcCccccceeCCCCc-------------EEEEecCC-ceEEEEeccC-chhhhcCCcccchhhhhceeccc
Confidence 2347888999999999998 89999999 8999999987 3333332 23445678888887
Q ss_pred C-----CEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 532 G-----RKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 532 ~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
+ ..++....-+.|..||+...... ...+..+.......|.+++.+++|++++.|+.||.|.|++..+-+.++-.
T Consensus 241 ~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 241 NAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred CCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 6 33334444566777776533322 22222233333458999999999999999999999999999988888777
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
+ +.|..-|+.+.|+||.+++++.+.+..+.|..+.-
T Consensus 320 k-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 320 K-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred h-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 6 58999999999999999999999998888877653
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=3.5e-14 Score=133.28 Aligned_cols=240 Identities=17% Similarity=0.210 Sum_probs=185.1
Q ss_pred CCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
..+|+|.+|+ +|+..+|.+-....|.||.....+.-..
T Consensus 10 ~~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~----------------------------------------- 47 (361)
T KOG1523|consen 10 LEPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEP----------------------------------------- 47 (361)
T ss_pred cCceeeeeec-CCCceEEeccCCceEEEEEecCCCCcee-----------------------------------------
Confidence 5789999999 8999999999999999999876542111
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC--ceeEEEeecCCCCEEEEE
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN--FDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~~~ 527 (882)
...+..|+..|+.++|.|..+ .|++++.|..-++|....+ +++...+..++..++++.
T Consensus 48 -------~htls~Hd~~vtgvdWap~sn-------------rIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~ 107 (361)
T KOG1523|consen 48 -------AHTLSEHDKIVTGVDWAPKSN-------------RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVK 107 (361)
T ss_pred -------ceehhhhCcceeEEeecCCCC-------------ceeEccCCCCccccccCCCCeeccceeEEEeccceeeEe
Confidence 224668999999999999998 8999999999999998443 345566777999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC--------
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA-------- 599 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-------- 599 (882)
|+|.++.+|+++....|.||-++..+ .. ....|....+...|.+++|+|++-+|++|+.|++.|+|..--
T Consensus 108 WsP~enkFAVgSgar~isVcy~E~EN-dW-WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 108 WSPKENKFAVGSGARLISVCYYEQEN-DW-WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred ecCcCceEEeccCccEEEEEEEeccc-ce-ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCC
Confidence 99999999999999999999887432 21 111223334457899999999999999999999999997521
Q ss_pred ----------CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-EEEEEccCCCCeEEEEECCCCCE
Q 047837 600 ----------GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE-MVAKAMGHGEVITGVTFLPDCKH 668 (882)
Q Consensus 600 ----------~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~d~~~ 668 (882)
|+++.++. ...+.+..+.|+|+|..|+-.+.|..+.+=|..... .+..+..-.-+..++.|-.+. .
T Consensus 186 p~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~ 262 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-S 262 (361)
T ss_pred CCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-c
Confidence 22333333 456789999999999999999999999999987664 344444344778888886654 4
Q ss_pred EEEEeCCC
Q 047837 669 IVSVGGDG 676 (882)
Q Consensus 669 l~s~~~dg 676 (882)
++.++.|.
T Consensus 263 vv~ag~~c 270 (361)
T KOG1523|consen 263 VVAAGYDC 270 (361)
T ss_pred eeecCCCC
Confidence 44555553
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.5e-14 Score=154.04 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=160.0
Q ss_pred CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC---CcEEEEecCCCcee
Q 047837 330 DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD---GTIRLWDLALQSEL 406 (882)
Q Consensus 330 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~ 406 (882)
+..|++||.+.... ..+.. |...+...+|+ |+|+.|+.++.+ ..|.+||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~----~~lt~----------------~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~ 241 (429)
T PRK01742 183 PYEVRVADYDGFNQ----FIVNR----------------SSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARK 241 (429)
T ss_pred eEEEEEECCCCCCc----eEecc----------------CCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceE
Confidence 47899999865432 12222 34566777888 899999887654 36999999875431
Q ss_pred eecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceecc
Q 047837 407 SKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVT 486 (882)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 486 (882)
.. ....+....++|+|+++
T Consensus 242 ~l----------------------------------------------------~~~~g~~~~~~wSPDG~--------- 260 (429)
T PRK01742 242 VV----------------------------------------------------ASFRGHNGAPAFSPDGS--------- 260 (429)
T ss_pred EE----------------------------------------------------ecCCCccCceeECCCCC---------
Confidence 10 00111122457777776
Q ss_pred CCceEEEEE-cCCCcEEEE--EcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEe-CCCeEEEEeCccCccceeeeccc
Q 047837 487 DSHYFLASG-GRDRTIHLY--DVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCS-ADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 487 ~~~~~l~~g-~~dg~v~iw--d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
.|+.+ ..+|.+.|| |+.++ ....+..+...+....|+|||+.|+.++ .++...+|++.......... .
T Consensus 261 ----~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~- 332 (429)
T PRK01742 261 ----RLAFASSKDGVLNIYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G- 332 (429)
T ss_pred ----EEEEEEecCCcEEEEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-
Confidence 56554 467766665 55443 3445666777788999999999877655 57888888876433322221 1
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
+.. ....|+|||++|+..+.++ +.+||+.+++...... .. ....+.|+|||++|+.++.++.+.+|++.
T Consensus 333 ----~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~--~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 333 ----GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS--TF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred ----CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC--CC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 112 4578999999998887755 6669999887653322 11 23567899999999999999988888863
Q ss_pred --CCeEEEEEccCCCCeEEEEECCC
Q 047837 643 --SGEMVAKAMGHGEVITGVTFLPD 665 (882)
Q Consensus 643 --~~~~~~~~~~h~~~v~~l~~s~d 665 (882)
+|+.+..+.+|.+.+...+|+|-
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 68888889889888999999984
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1.3e-12 Score=136.42 Aligned_cols=328 Identities=14% Similarity=0.129 Sum_probs=196.3
Q ss_pred EEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-EEEEeCCceEEE
Q 047837 257 ACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK-LVVVYGDHSLYV 335 (882)
Q Consensus 257 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-ll~~~~d~~i~i 335 (882)
++-..+|.|.+.|..+.+.+.++... ......+.|+|||+ +++++.||.|.+
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~---------------------------~~~h~~~~~s~Dgr~~yv~~rdg~vsv 62 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTG---------------------------GAPHAGLKFSPDGRYLYVANRDGTVSV 62 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-S---------------------------TTEEEEEE-TT-SSEEEEEETTSEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCC---------------------------CCceeEEEecCCCCEEEEEcCCCeEEE
Confidence 44556899999999998888776411 01123467999997 556677999999
Q ss_pred EEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee-CCCcEEEEecCCCceeeecccCCc
Q 047837 336 WDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS-ADGTIRLWDLALQSELSKDVLGHE 414 (882)
Q Consensus 336 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~ 414 (882)
+|+.+.+....... .....+++++ +||++++++. .++.+.++|.++.+.+.....+.
T Consensus 63 iD~~~~~~v~~i~~--------------------G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~- 120 (369)
T PF02239_consen 63 IDLATGKVVATIKV--------------------GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG- 120 (369)
T ss_dssp EETTSSSEEEEEE---------------------SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--E-
T ss_pred EECCcccEEEEEec--------------------CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeeccccc-
Confidence 99998765443211 2234556777 8898887665 68999999999877665421110
Q ss_pred cceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEE
Q 047837 415 SLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLAS 494 (882)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 494 (882)
...+ .....+..+..++..+ .+++.
T Consensus 121 ------------------------------------~~~~-------~~~~Rv~aIv~s~~~~------------~fVv~ 145 (369)
T PF02239_consen 121 ------------------------------------MPVD-------GPESRVAAIVASPGRP------------EFVVN 145 (369)
T ss_dssp ------------------------------------E-TT-------TS---EEEEEE-SSSS------------EEEEE
T ss_pred ------------------------------------cccc-------ccCCCceeEEecCCCC------------EEEEE
Confidence 0000 1233455555555554 24555
Q ss_pred EcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE-eCCCeEEEEeCccCccceeeeccceecccCCceEE
Q 047837 495 GGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC-SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYD 573 (882)
Q Consensus 495 g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 573 (882)
--+.+.|.+.|......+...............|+|++++++.+ ..+..|-++|..+.+....+.... ..|..+...
T Consensus 146 lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~--~p~~~~~~~ 223 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK--KPHPGPGAN 223 (369)
T ss_dssp ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS--SBEETTEEE
T ss_pred EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc--ccccccccc
Confidence 55568888888776533433344455677889999999987654 567789999998765544433211 112222222
Q ss_pred E-------EE--ecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEE----eCCCcEEEEE
Q 047837 574 M-------DI--DPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS----YSNKSICLYD 640 (882)
Q Consensus 574 ~-------~~--sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~~dg~i~iwd 640 (882)
+ .| ...+...++.-....+.+||..+.+.++++. ..... .-+..+|++++|.+. ...++|.++|
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~--~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP--TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE---SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE--CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 1 12 2223333233333466789999999999998 33344 788889999999987 4568999999
Q ss_pred ccCCeEEEEEccC-CCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCCCCcccC
Q 047837 641 FISGEMVAKAMGH-GEVITGVTFLPDCKHIVSVG--GDGLQRVKEKYGILPPRNFA 693 (882)
Q Consensus 641 ~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~--~dg~i~vwd~~~~~~~~~~~ 693 (882)
.++.+.+..+... ...+..+.|++||+++..+. .++.|.+||..+.+....+.
T Consensus 301 ~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 301 KKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp CCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999888877532 23589999999999776554 33479999999988776654
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=3.4e-12 Score=120.16 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=121.1
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCC--CCEEEEEEccCCCEEEE-Ee
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHS--AAVTAVKFTCNGRKILS-CS 539 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s-~~ 539 (882)
...+|.++.+.++ .|++.- .+.|+||...++.+.++.+.... ....+++-+.+..+||. |-
T Consensus 93 f~~~I~~V~l~r~---------------riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD---------------RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred eccceeeEEEcCC---------------eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 3456777777665 344443 46799999987656666655432 33333333334445554 33
Q ss_pred CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCc-EEEEEccCCceEEEEEeccCCCCcEEE
Q 047837 540 ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKK-INSFSIAAGKLIRSFKQAKDFGDPMKV 618 (882)
Q Consensus 540 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~ 618 (882)
.-|.|+|-|+...... ......+|...|.|++.+.+|..+|+++..|+ |||||..+|+.+.+++.......|.+|
T Consensus 157 k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred ccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 5689999999855432 12233456789999999999999999999996 899999999999999877778899999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccC
Q 047837 619 TVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 619 ~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
+|||+..+||++++.|++.|+.++.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999999865
No 215
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.9e-13 Score=140.45 Aligned_cols=490 Identities=13% Similarity=0.123 Sum_probs=274.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCC------------CCEEE
Q 047837 37 LMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPD------------GEHLV 104 (882)
Q Consensus 37 ~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspd------------g~~La 104 (882)
++.|-.....-.++.|+|.| +||.|+. ..|.|-|..+.+.+..+.-|+..|+.+.|.|- .-+||
T Consensus 8 tlpG~l~~sN~~A~Dw~~~G-LiAygsh---slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSPSG-LIAYGSH---SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cCCCCCCcccccccccCccc-eEEEecC---ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence 44443333557789999988 8888863 37999999999999999999999999999872 12567
Q ss_pred EEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEcc---CC-CEEEE-ECCCcEEEEEcccCccceeccccCccceee
Q 047837 105 TVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS---DA-KFIVT-AGKKHLKFWTIGSSATARTRLNKGTESLTL 177 (882)
Q Consensus 105 s~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~---d~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 177 (882)
+++ |.|.+||...+..+..+..+. .++..++|-+ +. .+|++ .+...+.+|+..+|+..
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~------------- 148 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF------------- 148 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee-------------
Confidence 777 999999999999998888776 8899999987 44 34443 44589999999888761
Q ss_pred cCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec-CCCEE
Q 047837 178 HAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA-SSKLI 256 (882)
Q Consensus 178 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l 256 (882)
|.-+....+. .|+.+.| |.+.+
T Consensus 149 ----------------------------------------Wk~~ys~~iL-----------------s~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 149 ----------------------------------------WKYDYSHEIL-----------------SCFRVDPFDSRHF 171 (1062)
T ss_pred ----------------------------------------eccccCCcce-----------------eeeeeCCCCcceE
Confidence 1111111110 3455555 23444
Q ss_pred EEEecCCeEEeeeccccee----cccccccCc---------ccCCC--CCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 257 ACACSNGAVHLFDIQSLKH----AGTLHYSEA---------KKCNG--ENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 257 ~~~~~dg~I~vwd~~~~~~----~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
..-+..|.+.+-+.-.... ...+..... ....+ +.....++.+. .. ...++|+|.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi--------ty--~a~faf~p~ 241 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI--------TY--CAQFAFSPH 241 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHH--------HH--HHhhhcChh
Confidence 4444455555443321100 000000000 00000 00000000000 00 224577887
Q ss_pred C-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEec
Q 047837 322 E-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 322 ~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~ 400 (882)
- +.+.......+.++|++-......... ..+.+.-+.++++ +..+.|.....||.+.+|--
T Consensus 242 ~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~vlP~---------------~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 242 WRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDVLPD---------------PRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEeccC---------------CCcceEEEEecCCeEEEEEe
Confidence 5 366667788899999976544332211 2222222222211 44566888899999999976
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
.......+. ....+.+..... +.++. .-.+-.+......|..+
T Consensus 304 k~~~~~f~~--~~~~l~~dl~~Q----------------------~~~vr----------~m~~~rp~~~~~cPs~~--- 346 (1062)
T KOG1912|consen 304 KEEPTEFKK--PNASLSMDLGEQ----------------------VHVVR----------PMEEFRPVIGASCPSTP--- 346 (1062)
T ss_pred eccCccccc--cchhhccccccc----------------------eEEEe----------echhcccceeecCCCCh---
Confidence 543322211 110010000000 00000 00111112222233321
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccC-----CCEEEEEeCCCeEEEEeCccCccc
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCN-----GRKILSCSADRSLVVRDVVETNSA 555 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~l~s~~~dg~i~vwd~~~~~~~ 555 (882)
+.++.--.+|.+.+|.+.++........+...-+..+.|.-. ...|..-+.|| ....+..+
T Consensus 347 ---------sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg-----~h~sGs~~ 412 (1062)
T KOG1912|consen 347 ---------SALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG-----SHSSGSTC 412 (1062)
T ss_pred ---------hhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcC-----CCCCCcee
Confidence 134555567888899988642221111112222223333211 12333444454 11111111
Q ss_pred eeeeccceecccCCceEEEEEecCC-------CEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEE
Q 047837 556 YKISRRHQQLASQGTVYDMDIDPTM-------EVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLV 628 (882)
Q Consensus 556 ~~~~~~~~~~~~~~~v~~~~~sp~~-------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 628 (882)
.++.... ...-.+-.|.+ .++|.|...|+|.++|+.++...+.+. .|...|.++.|--..+++-
T Consensus 413 ~~~~p~p-------~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--vht~~VkgleW~g~sslvS 483 (1062)
T KOG1912|consen 413 VRMRPMP-------ELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--VHTSLVKGLEWLGNSSLVS 483 (1062)
T ss_pred eecccCc-------ccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--ccccceeeeeeccceeEEE
Confidence 1111000 01111111111 368899999999999999999988888 8999999999987766654
Q ss_pred EEe---------CCCcEEEEEccCCeE--EEEEcc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 629 CSY---------SNKSICLYDFISGEM--VAKAMG-HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 629 ~~~---------~dg~i~iwd~~~~~~--~~~~~~-h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
.++ .-+.+.+-|+++|.- ++.+++ ...+|+.+..|.-++||+..-.|.-+.+||+++....+
T Consensus 484 fsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 484 FSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred eeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 333 234678889999843 232232 45799999999999999999999999999997654443
No 216
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.60 E-value=6.1e-12 Score=125.88 Aligned_cols=136 Identities=22% Similarity=0.309 Sum_probs=104.7
Q ss_pred EEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEE
Q 047837 16 CAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIA 95 (882)
Q Consensus 16 ~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~la 95 (882)
++..+...=++|+..+..+-..+.... -++..+.+||.|++|++... ..|.+|.-..+..+.++. | ..|..+.
T Consensus 6 ~~~~s~~i~~f~~~~s~~~~~~~~~~~--~p~~~~~~SP~G~~l~~~~~---~~V~~~~g~~~~~l~~~~-~-~~V~~~~ 78 (561)
T COG5354 6 PLDYSAVISVFWNSQSEVIHTRFESEN--WPVAYVSESPLGTYLFSEHA---AGVECWGGPSKAKLVRFR-H-PDVKYLD 78 (561)
T ss_pred eeeccceEEEeecCccccccccccccC--cchhheeecCcchheehhhc---cceEEccccchhheeeee-c-CCceecc
Confidence 344444556677777776666654444 68999999999999999854 249999998887666665 3 4589999
Q ss_pred ECCCCCEEEEEc-----------------CEEEEEEcCcceeeeeeecCCccccee-EEEEccCCCEEEEECCCcEEEEE
Q 047837 96 FSPDGEHLVTVG-----------------GYIYLWNWRSAMLVMKLKANSSCSAIT-SACFSSDAKFIVTAGKKHLKFWT 157 (882)
Q Consensus 96 fspdg~~Las~~-----------------~~i~iWd~~~g~~~~~~~~~~~~~~v~-~l~fs~d~~~l~~~~~~~i~iwd 157 (882)
|||.++||.+-. ..+.|||+.+|.++..+.......-.+ -+.|+-|.+++|-.....+.|++
T Consensus 79 fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e 158 (561)
T COG5354 79 FSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHE 158 (561)
T ss_pred cCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEe
Confidence 999999999865 259999999999999998776322245 68899988888877667788888
Q ss_pred c
Q 047837 158 I 158 (882)
Q Consensus 158 ~ 158 (882)
+
T Consensus 159 ~ 159 (561)
T COG5354 159 I 159 (561)
T ss_pred c
Confidence 7
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-13 Score=149.89 Aligned_cols=214 Identities=13% Similarity=0.156 Sum_probs=140.0
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEEEEcCC---CcEEEEEcCCCce-eEEEeecCCCCEEEEEEccCCCEEE
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD---RTIHLYDVKRNFD-LIESIDDHSAAVTAVKFTCNGRKIL 536 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~ 536 (882)
..|...+....|+|+++ .|+..+.+ ..|++||+.++.. .+..+.+| ...++|+|||++|+
T Consensus 200 t~~~~~v~~p~wSPDG~-------------~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La 263 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGS-------------KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLA 263 (429)
T ss_pred ccCCCccccceEcCCCC-------------EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEE
Confidence 35566778888888887 67665433 4699999987532 23333333 34689999999988
Q ss_pred EEe-CCCeEEEE--eCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe-CCCcEEEEEccCC-ceEEEEEeccC
Q 047837 537 SCS-ADRSLVVR--DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QDKKINSFSIAAG-KLIRSFKQAKD 611 (882)
Q Consensus 537 s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~-~~~~~~~~~~~ 611 (882)
.+. .+|.+.|| |+.++. ...+. .+...+....|+|||+.|+..+ .++..++|++... .....+ .+
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~-~~~lt------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~ 333 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGT-PSQLT------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GG 333 (429)
T ss_pred EEEecCCcEEEEEEECCCCC-eEeec------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cC
Confidence 764 67766665 554332 22221 1234677899999999877655 5788888887542 222222 22
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--CCCCC
Q 047837 612 FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY--GILPP 689 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~--~~~~~ 689 (882)
.. ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++.++.+++|++. ++...
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 22 4578999999998887764 667999988754332222 34568899999999999999988888763 34444
Q ss_pred cccC-CCCCcccEEEec
Q 047837 690 RNFA-QPAALSPIIFCE 705 (882)
Q Consensus 690 ~~~~-~~~~~~~~~~s~ 705 (882)
..+. +...+....|+|
T Consensus 409 ~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEccCCCCCCCCcccCC
Confidence 4443 233344444544
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.9e-13 Score=128.37 Aligned_cols=212 Identities=14% Similarity=0.193 Sum_probs=169.9
Q ss_pred eeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC--ceeEEEeecCCCCEEEEEEccCCCEEEE
Q 047837 460 LDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN--FDLIESIDDHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 460 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s 537 (882)
+..-..+|+|.+|+++.. .+|++.....|.||..... ++..+++..|...|+.|+|+|..+.|++
T Consensus 6 ~~~~~~pitchAwn~drt-------------~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRT-------------QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred eeeccCceeeeeecCCCc-------------eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE
Confidence 334467899999999988 8999999999999998764 4678899999999999999999999999
Q ss_pred EeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceE--EEEEeccCCCCc
Q 047837 538 CSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLI--RSFKQAKDFGDP 615 (882)
Q Consensus 538 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~~v 615 (882)
++.|..-++|....+.. .......+.++...+++.|+|.++.+|+|+..+.|.||-++....- .......+...|
T Consensus 73 cs~drnayVw~~~~~~~---WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGT---WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred ccCCCCccccccCCCCe---eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 99999999999853321 1112223344578999999999999999999999999887643321 111112567889
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcc------------------CCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCe
Q 047837 616 MKVTVDPSGSYLVCSYSNKSICLYDFI------------------SGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGL 677 (882)
Q Consensus 616 ~~~~~spdg~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~ 677 (882)
+++.|+|++-+|++|+.|+..||+..- -|+++.++....+.|..+.|+|+|..|+-.+.|..
T Consensus 150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST 229 (361)
T ss_pred eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc
Confidence 999999999999999999999999751 12344445445678999999999999999999999
Q ss_pred EEEEeCCCCC
Q 047837 678 QRVKEKYGIL 687 (882)
Q Consensus 678 i~vwd~~~~~ 687 (882)
+.+=|-..+.
T Consensus 230 v~~~da~~p~ 239 (361)
T KOG1523|consen 230 VSFVDAAGPS 239 (361)
T ss_pred eEEeecCCCc
Confidence 9999988765
No 219
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5.1e-12 Score=128.13 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=102.3
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEE--EeCCCcEEEEEccCCceEEEEEeccCCCCcEEEE
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVIT--VGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVT 619 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 619 (882)
.++++.+++ +...... +...++|.++.|+|+++.+++ |-.-.++.|||++ ++.+..+. .++-+++-
T Consensus 251 q~Lyll~t~-g~s~~V~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~ 318 (566)
T KOG2315|consen 251 QTLYLLATQ-GESVSVP------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAF 318 (566)
T ss_pred ceEEEEEec-CceEEEe------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceE
Confidence 457777776 2222221 122379999999999986654 4456799999987 77777764 56778899
Q ss_pred ECCCCCEEEEEeC---CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC------CCeEEEEeCCCCCCC
Q 047837 620 VDPSGSYLVCSYS---NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG------DGLQRVKEKYGILPP 689 (882)
Q Consensus 620 ~spdg~~l~~~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~------dg~i~vwd~~~~~~~ 689 (882)
|+|.|++|+.++- -|.|-|||+.+.+++..+..-. -+-+.|+|||++++|+.. |+.++||+..+....
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 9999999987765 4799999999999998887543 345789999999999874 788999999875544
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=2.8e-13 Score=135.87 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=85.2
Q ss_pred eEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCc
Q 047837 512 LIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKK 591 (882)
Q Consensus 512 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 591 (882)
++..+..-...|..++|+|||++||+.+.||.++|+|..+.+....+.. . .+...|++|||||++|++|++|.-
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-Y-----FGGLLCvcWSPDGKyIvtGGEDDL 355 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-Y-----FGGLLCVCWSPDGKYIVTGGEDDL 355 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-h-----ccceEEEEEcCCccEEEecCCcce
Confidence 3334444456899999999999999999999999999986543322211 1 268899999999999999999999
Q ss_pred EEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 592 INSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 592 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
|.||.+..++.+..-+ +|..+|..++|.|
T Consensus 356 VtVwSf~erRVVARGq--GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 356 VTVWSFEERRVVARGQ--GHKSWVSVVAFDP 384 (636)
T ss_pred EEEEEeccceEEEecc--ccccceeeEeecc
Confidence 9999999999888776 9999999999983
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.1e-14 Score=140.91 Aligned_cols=307 Identities=18% Similarity=0.200 Sum_probs=210.3
Q ss_pred eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 239 VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 239 ~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.|...++.+.|+..|..|++|+.|..|.+||...++....+. .||..-+..+.+ +-|
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------SGH~~NvfQaKF----------------iP~ 196 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-------SGHCNNVFQAKF----------------IPF 196 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-------cccccchhhhhc----------------cCC
Confidence 345667899999999999999999999999999887766554 344443332211 224
Q ss_pred cCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 319 s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
+.+..++.++.||.+++=.+...........+ ..|.++|.-++.-|.....|.+++.|+.+.-+
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl----------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRL----------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI 260 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceec----------------ccccCccceeeecCCCCCcccccccccceeee
Confidence 44556788888999998766433222211122 34666777777776777889999999999999
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc---eEEEEEEecC
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA---EILSLSFSLS 475 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~---~v~~~~~~~~ 475 (882)
|+........+.. ...+.. ....++..|.
T Consensus 261 Dlr~~~pa~~~~c------------------------------------------------r~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 261 DLRQDVPAEKFVC------------------------------------------------READEKERVGLYTIAVDPR 292 (559)
T ss_pred eeccCCccceeee------------------------------------------------eccCCccceeeeeEecCCC
Confidence 9886654322110 011111 3445566665
Q ss_pred CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee-----EEEee------cCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 476 SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL-----IESID------DHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 476 ~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~-----~~~~~------~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
.. +.+++|+.|..+++||.+.-.+. +..+- .....|++++|+.++.-|.++..|-.|
T Consensus 293 nt------------~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 293 NT------------NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred Cc------------cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 54 37999999999999998752111 11111 233569999999888888888888889
Q ss_pred EEEeCccCcc--ceeee----ccce-ecccC--CceEEEEE-ecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCC
Q 047837 545 VVRDVVETNS--AYKIS----RRHQ-QLASQ--GTVYDMDI-DPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGD 614 (882)
Q Consensus 545 ~vwd~~~~~~--~~~~~----~~~~-~~~~~--~~v~~~~~-sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 614 (882)
+++.-..+.. ..... ..+. ..+|. ..|..+-| -|..+++++|+.=|.|.||+-.+++.++-+. +...-
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me--gDr~V 438 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME--GDRHV 438 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh--cccce
Confidence 9995442221 00000 0000 12222 34666654 5788999999999999999999999999988 66668
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 615 PMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 615 v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
|+|+.-+|--..||+.+-|.-|+||-..+.+.
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 99999999999999999999999998755443
No 222
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=3.5e-13 Score=127.62 Aligned_cols=359 Identities=16% Similarity=0.212 Sum_probs=214.7
Q ss_pred eeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCC
Q 047837 243 VKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSE 322 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 322 (882)
.+.++.|.-.|.+||+|..+|.|.+|.-..... +...+ ....+.|...+. +.........+..+.|.+++
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~--~t~fqshepEFD-------YLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNF--QTEFQSHEPEFD-------YLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccc-cceee--eeeeeccCcccc-------hhhhhhhhhhhhhceecCCC
Confidence 348899999999999999999999997654322 01110 011122222211 11112233445667888876
Q ss_pred ---eEEEEeCCceEEEEEcccccccc-----------------eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 323 ---KLVVVYGDHSLYVWDIHDVNEAT-----------------RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 323 ---~ll~~~~d~~i~iwd~~~~~~~~-----------------~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
.++..+.|.+|++|.+....... +...+..|...+-...-.-..++|.-.|.++.++ .|
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD 175 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SD 175 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-Cc
Confidence 37888889999999986554322 0112233333333333333457899999999999 78
Q ss_pred CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 462 (882)
...++++. |=.|.+|+++-.. +.+..+.+-|.. +..
T Consensus 176 ~Et~lSAD-dLRINLWnlei~d---------------------------------------~sFnIVDIKP~n----mEe 211 (433)
T KOG1354|consen 176 KETFLSAD-DLRINLWNLEIID---------------------------------------QSFNIVDIKPAN----MEE 211 (433)
T ss_pred cceEeecc-ceeeeeccccccC---------------------------------------CceeEEEccccC----HHH
Confidence 88888774 6789999987422 123444444332 112
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee-----EE----------EeecCCCCEEEEE
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL-----IE----------SIDDHSAAVTAVK 527 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~-----~~----------~~~~h~~~v~~~~ 527 (882)
-..-|++..|+|... ++++-.+..|+|++-|++...-+ +. .+.+--..|.++.
T Consensus 212 LteVITsaEFhp~~c------------n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvK 279 (433)
T KOG1354|consen 212 LTEVITSAEFHPHHC------------NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVK 279 (433)
T ss_pred HHHHHhhhccCHhHc------------cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceE
Confidence 234467778888765 37788888899999999842111 10 1112235688999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecc-------cCCce---EEEEEecCCCEEEEEeCCCcEEEEEc
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLA-------SQGTV---YDMDIDPTMEVVITVGQDKKINSFSI 597 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~v---~~~~~sp~~~~l~~~~~d~~v~iwd~ 597 (882)
|+++|+++++-+. -+|++||+............|..+. ..+.| ..++|+.++.++++|+....+++|+.
T Consensus 280 Fs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 280 FSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred EccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 9999999998765 5799999965555544444443221 11222 46889999999999999999999997
Q ss_pred cCCceE-EEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCC
Q 047837 598 AAGKLI-RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 598 ~~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg 676 (882)
..|... .++........+..+ ..-+.+.+++......+| +..+. ....+...+|+|....+|.+....
T Consensus 359 ~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~-------vd~ld-f~kkilh~aWhp~en~ia~aatnn 427 (433)
T KOG1354|consen 359 ARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEIS-------VDALD-FRKKILHTAWHPKENSIAVAATNN 427 (433)
T ss_pred CCCcceeecccccccCCccccc---ccceeeecCCCccccccc-------cchhh-hhhHHHhhccCCccceeeeeecCc
Confidence 766432 222211111111111 112334444443331111 11111 334566678999998888777643
Q ss_pred eEEEE
Q 047837 677 LQRVK 681 (882)
Q Consensus 677 ~i~vw 681 (882)
+.|+
T Consensus 428 -lyif 431 (433)
T KOG1354|consen 428 -LYIF 431 (433)
T ss_pred -eEEe
Confidence 4443
No 223
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=4.5e-12 Score=127.76 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=98.8
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCE
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEH 102 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~ 102 (882)
..+.||.........-.-.. -.-+-+.|||-|.||++--. . -|.+|-=++...+++|. |. .|.-+.|||..+|
T Consensus 191 ~svfwN~~~n~p~~ie~Ren--WTetyv~wSP~GTYL~t~Hk--~-GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkY 263 (698)
T KOG2314|consen 191 VSVFWNSKFNEPSLIEEREN--WTETYVRWSPKGTYLVTFHK--Q-GIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKY 263 (698)
T ss_pred eEEEccccCCchhhhhhhhc--ceeeeEEecCCceEEEEEec--c-ceeeecCccHHHHHhcc-CC-CceeeecCCccce
Confidence 36778877654322211111 35678999999999999854 2 49999888877777775 55 4899999999999
Q ss_pred EEEEc-------------CEEEEEEcCcceeeeeeecCCccccee-EEEEccCCCEEEEECCCcEEEEEccc
Q 047837 103 LVTVG-------------GYIYLWNWRSAMLVMKLKANSSCSAIT-SACFSSDAKFIVTAGKKHLKFWTIGS 160 (882)
Q Consensus 103 Las~~-------------~~i~iWd~~~g~~~~~~~~~~~~~~v~-~l~fs~d~~~l~~~~~~~i~iwd~~~ 160 (882)
|++-+ ..++|||+.+|.+.+.+........+. -..||.|++++|--..+.|.|++..+
T Consensus 264 LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps 335 (698)
T KOG2314|consen 264 LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS 335 (698)
T ss_pred EEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc
Confidence 99977 479999999999998887643223333 36799999999988888898888654
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=8.3e-13 Score=145.17 Aligned_cols=276 Identities=14% Similarity=0.147 Sum_probs=168.7
Q ss_pred EECCCCceEEEEEecCCCCCeEEEEEcCCC-CEEEEeecCCCCeEEEEECCCc-------eeeEEeeccccceeEEEECC
Q 047837 27 YDVDSSTQSHLMVSHRMPKPLCCVAMSRDG-RYVAAGESGPQPAVLVWDCANL-------AFISELKGHLYGVECIAFSP 98 (882)
Q Consensus 27 wd~~~~~~~~~l~~h~~~~~I~~va~spdg-~~la~g~~~~d~~I~vwd~~t~-------~~~~~l~~h~~~V~~lafsp 98 (882)
|+++ |..+..+..|. ..|..+|.+++. .++++|+. ||+|+|||...- +...+...-..++.++.+.+
T Consensus 1034 W~p~-G~lVAhL~Ehs--~~v~k~a~s~~~~s~FvsgS~--DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHS--SAVIKLAVSSEHTSLFVSGSD--DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred CCcc-ceEeehhhhcc--ccccceeecCCCCceEEEecC--CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 6655 77777777777 777788887655 99999965 999999998631 12223333467899999999
Q ss_pred CCCEEEEEc--CEEEEEEcCcc-------eeeeeeecCCcccceeEEEEccC-CC-EEEEECC-CcEEEEEcccCcccee
Q 047837 99 DGEHLVTVG--GYIYLWNWRSA-------MLVMKLKANSSCSAITSACFSSD-AK-FIVTAGK-KHLKFWTIGSSATART 166 (882)
Q Consensus 99 dg~~Las~~--~~i~iWd~~~g-------~~~~~~~~~~~~~~v~~l~fs~d-~~-~l~~~~~-~~i~iwd~~~~~~~~~ 166 (882)
.+..+|.++ |.|.+.++.-- .+......+.....|...+|... .. .|+.+.+ +.|..||+......
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-- 1186 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-- 1186 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--
Confidence 999999998 99999998752 22222223322233444455553 33 5666666 78999998754431
Q ss_pred ccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeee
Q 047837 167 RLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNG 246 (882)
Q Consensus 167 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 246 (882)
|... .......+++
T Consensus 1187 ---------------------------------w~lk---------------------------------~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1187 ---------------------------------WRLK---------------------------------NQLRHGLVTS 1200 (1431)
T ss_pred ---------------------------------Hhhh---------------------------------cCccccceeE
Confidence 0000 0001233488
Q ss_pred EEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEE---eecCCC-
Q 047837 247 FALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIAC---QFSTSE- 322 (882)
Q Consensus 247 ~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~- 322 (882)
++.+|-+.+++.|+..|.+.+||+.-+..+..... |....+..+ -+.+..
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--------------------------P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--------------------------PARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccC--------------------------cccCCcceEEeeccCCCCc
Confidence 99999999999999999999999987665544432 222222222 233333
Q ss_pred eEEEEe--CCceEEEEEcccccccceeeeeecC-cceeeeecccCCC---CCCCCCcceeeeccCCCcEEEEeeCCCcEE
Q 047837 323 KLVVVY--GDHSLYVWDIHDVNEATRCCVLVSH-SACIWDIKNLGCE---NMHDPSVSCVARGCTGGVSFSTCSADGTIR 396 (882)
Q Consensus 323 ~ll~~~--~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~---~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~ 396 (882)
-.++++ ..+.|.+|++.++.... ++... ..+...-.. +.. ..+.-.....++. ..+..+++|+.|..||
T Consensus 1255 ~~vs~~~~~~nevs~wn~~~g~~~~---vl~~s~~~p~ls~~~-Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQT---VLWASDGAPILSYAL-PSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred eEEEecccCCCceeeeecccCcceE---EEEcCCCCcchhhhc-ccccCCCCCcccceeeecc-cCCceeeecCCcccee
Confidence 234333 47899999998873322 22222 111111111 110 0111111122232 4566889999999999
Q ss_pred EEecCCCcee
Q 047837 397 LWDLALQSEL 406 (882)
Q Consensus 397 vwd~~~~~~~ 406 (882)
.||.......
T Consensus 1330 ~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1330 KWDPTRPEIS 1339 (1431)
T ss_pred eccCCCcccc
Confidence 9999865543
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.7e-12 Score=122.56 Aligned_cols=297 Identities=16% Similarity=0.182 Sum_probs=192.5
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCC-e
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSE-K 323 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~ 323 (882)
+.++|++--.-+|++..|..||+|+-.. .+...++ .....++.+++|-|.+ .
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk--------------------------s~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK--------------------------SVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCC-CCCceec--------------------------chhhcceeEEEeccCCcc
Confidence 6789998777789999999999999775 3332222 1234467799999986 4
Q ss_pred EEEEeCCceEEEEEccccccccee-eeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC-CCcEEEEecC
Q 047837 324 LVVVYGDHSLYVWDIHDVNEATRC-CVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA-DGTIRLWDLA 401 (882)
Q Consensus 324 ll~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~-dg~i~vwd~~ 401 (882)
-++.+..+.|.+|..+......+. ..+..|...|.. ..+| ..|+.+.|. +||..+++++. |..|++||..
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~------~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpd 226 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQ------DPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPD 226 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhhee------CCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCC
Confidence 666677778999988654332221 122333333322 1345 789999999 88999999885 6789999999
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcc
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDV 481 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 481 (882)
++..+... ....+.+.-+.|+|++.
T Consensus 227 tg~~~pL~---------------------------------------------------~~glgg~slLkwSPdgd---- 251 (445)
T KOG2139|consen 227 TGQKIPLI---------------------------------------------------PKGLGGFSLLKWSPDGD---- 251 (445)
T ss_pred CCCccccc---------------------------------------------------ccCCCceeeEEEcCCCC----
Confidence 88754311 01223455566777766
Q ss_pred ceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeec-
Q 047837 482 LEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISR- 560 (882)
Q Consensus 482 ~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~- 560 (882)
+++.+.-|+..++|+....+...+-.. ..+.|...+|+|+|++|+.+.. |.-++|.+.-.+......+
T Consensus 252 ---------~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 252 ---------VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred ---------EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCc
Confidence 899999999999997665544433333 3448999999999998775543 2344554432222111110
Q ss_pred ----cce-------------ecccCCceEEEEEecCCCEEEEEeCCC--------cEEEEEccCCceEEEEE-eccCCCC
Q 047837 561 ----RHQ-------------QLASQGTVYDMDIDPTMEVVITVGQDK--------KINSFSIAAGKLIRSFK-QAKDFGD 614 (882)
Q Consensus 561 ----~~~-------------~~~~~~~v~~~~~sp~~~~l~~~~~d~--------~v~iwd~~~~~~~~~~~-~~~~~~~ 614 (882)
.+. ..--.+.+.+++|.|.|.+||+.-..+ .|.+||.+..-.+.-.. .......
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~ 400 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY 400 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence 000 001135788999999999999876554 36778876443333221 1122334
Q ss_pred cEEEEECC---CCCEEEEEeCCCcEEEEEcc
Q 047837 615 PMKVTVDP---SGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 615 v~~~~~sp---dg~~l~~~~~dg~i~iwd~~ 642 (882)
...++|+| +|.+|..+-..|.+.-|++.
T Consensus 401 P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 401 PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 67788887 67888888888888877763
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6.6e-14 Score=140.35 Aligned_cols=224 Identities=21% Similarity=0.221 Sum_probs=164.0
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc--CCCEEE
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC--NGRKIL 536 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~ 536 (882)
.+.+|.+.|++++|+.+|. +|++|+.|-.+.|||.-..+.+...-.+|...|.++.|-| +.+.++
T Consensus 45 eL~GH~GCVN~LeWn~dG~-------------lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE-------------LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred hhccccceecceeecCCCC-------------EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence 4779999999999999998 9999999999999999866444455568999999999999 667889
Q ss_pred EEeCCCeEEEEeCccCccce----eeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceE-------E
Q 047837 537 SCSADRSLVVRDVVETNSAY----KISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLI-------R 604 (882)
Q Consensus 537 s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~-------~ 604 (882)
+|..|..|+++|+....... .....+....|...|..++..|++ ..+.++++||+++-+|++..... .
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999999998522111 111122233456788999999999 68899999999999999863211 0
Q ss_pred EEE-eccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEEccC--------Ce----------EEEEE-ccCC---------
Q 047837 605 SFK-QAKDFGDPMKVTVDPS-GSYLVCSYSNKSICLYDFIS--------GE----------MVAKA-MGHG--------- 654 (882)
Q Consensus 605 ~~~-~~~~~~~v~~~~~spd-g~~l~~~~~dg~i~iwd~~~--------~~----------~~~~~-~~h~--------- 654 (882)
.+. .....-...++.++|. ..+||+|+.|-..++||.+. +. ++..+ .+|.
T Consensus 192 ~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR 271 (758)
T ss_pred HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence 000 0122345678999995 56889999999999999421 11 12222 2232
Q ss_pred --CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCC
Q 047837 655 --EVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQP 695 (882)
Q Consensus 655 --~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 695 (882)
..++.+.|+|+|.-|+..-....|+++|+...+.+..+..+
T Consensus 272 ~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 272 YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 12567899999987766666678999999987776655443
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=1e-12 Score=144.55 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=181.3
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
..|...|..++.+++.+.+|+||+.||+|++|+...-..-.. ..
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------------------------------s~ 1088 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------------------------------SA 1088 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc------------------------------------ee
Confidence 347777778888877779999999999999999874221000 00
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC--ce----eEEEeecCC
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN--FD----LIESIDDHS 520 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~--~~----~~~~~~~h~ 520 (882)
+ ..+.+......+.++.+.+.+. .+|.++.||.|++.++... .. ..+....+.
T Consensus 1089 r--------S~ltys~~~sr~~~vt~~~~~~-------------~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1089 R--------SELTYSPEGSRVEKVTMCGNGD-------------QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred e--------eeEEEeccCCceEEEEeccCCC-------------eEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence 0 0122333456677788887777 8999999999999998761 11 111111122
Q ss_pred -C-CEEEEEEcc-CCC-EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 521 -A-AVTAVKFTC-NGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 521 -~-~v~~~~~s~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
+ .|..-+|.. .+. .|+.+..-+.|..||++.......+.... ..+.|++++.+|.+.++++|...|.+.+||
T Consensus 1148 ~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~----~hG~vTSi~idp~~~WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL----RHGLVTSIVIDPWCNWLVIGTSRGQLVLWD 1223 (1431)
T ss_pred CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc----cccceeEEEecCCceEEEEecCCceEEEEE
Confidence 2 233334433 333 77888888999999998765554443222 237899999999999999999999999999
Q ss_pred ccCCceEEEEEeccCCCCcEEEEECCCC---CEEEEE-e-CCCcEEEEEccCCeEEEEEccC------------------
Q 047837 597 IAAGKLIRSFKQAKDFGDPMKVTVDPSG---SYLVCS-Y-SNKSICLYDFISGEMVAKAMGH------------------ 653 (882)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~h------------------ 653 (882)
++-+.++.... +++..++..+..+|-. ...+++ + ..+.|.+|++.+|.+-..+..-
T Consensus 1224 LRF~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp 1302 (1431)
T KOG1240|consen 1224 LRFRVPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKP 1302 (1431)
T ss_pred eecCceeeccc-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCC
Confidence 99888888877 4666889988887733 354444 4 5789999999998665554322
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 047837 654 -GEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 654 -~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
.-.....++..-+.++.+++.|..||.||...+...
T Consensus 1303 ~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1303 DSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 112223344445678999999999999999876544
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=4.8e-13 Score=126.44 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=112.8
Q ss_pred EEEEEccCCCEEEEEeC----------CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE--eCCCc
Q 047837 524 TAVKFTCNGRKILSCSA----------DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV--GQDKK 591 (882)
Q Consensus 524 ~~~~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~ 591 (882)
..+.|+++|.+|+.-.. -+...+|.++......... .+...++|.+++|+|+|+.+++. ..++.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i----~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI----ELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee----eccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 35788999988775433 1335556554332222211 11223579999999999987654 35679
Q ss_pred EEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC---CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCE
Q 047837 592 INSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS---NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKH 668 (882)
Q Consensus 592 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 668 (882)
|.+||++ ++.+..+. ...+..+.|||+|++|++++. .|.|.+||+++.+.+.... | ..++.++|+|||++
T Consensus 85 v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY 157 (194)
T ss_pred cEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE
Confidence 9999997 77776664 457789999999999999874 4679999999999988775 4 35789999999999
Q ss_pred EEEEeC------CCeEEEEeCCCCC
Q 047837 669 IVSVGG------DGLQRVKEKYGIL 687 (882)
Q Consensus 669 l~s~~~------dg~i~vwd~~~~~ 687 (882)
|+++.. |..++||+..+.+
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEEEEeccceeccccEEEEEecCeE
Confidence 999874 7889999987643
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=4e-13 Score=126.97 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=111.8
Q ss_pred ccccCCCCCeEEEeec------------eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEE
Q 047837 6 NIKKPDSSSKCAYVAG------------CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVW 73 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~~------------~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vw 73 (882)
+.++|+|...++...- ..|...+.+.. ....+.-... ++|.+++|+|+|+.+|+.....+..|.+|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~-~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKE-GPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCC-CceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 6788998866655551 23444444433 3344433331 57999999999999887754446689999
Q ss_pred ECCCceeeEEeeccccceeEEEECCCCCEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEE
Q 047837 74 DCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTA 148 (882)
Q Consensus 74 d~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 148 (882)
|++ ++.+..+. ...+..+.|||+|++||.++ |.|.+||+.+.+.+.+... ..++.++|+|||++|+++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----SDATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----CcEEEEEEcCCCCEEEEE
Confidence 996 67766664 56778999999999999987 6899999999988877653 458999999999999998
Q ss_pred C-------CCcEEEEEcccCcc
Q 047837 149 G-------KKHLKFWTIGSSAT 163 (882)
Q Consensus 149 ~-------~~~i~iwd~~~~~~ 163 (882)
. ++.++||+.....+
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EeccceeccccEEEEEecCeEe
Confidence 5 35799999975543
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=9.7e-11 Score=127.72 Aligned_cols=183 Identities=19% Similarity=0.247 Sum_probs=138.7
Q ss_pred CCeEEEeeceEEEEEECCCCceEEEEEecCCCCC---eEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecccc
Q 047837 13 SSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKP---LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLY 89 (882)
Q Consensus 13 ~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~---I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~ 89 (882)
...++..+.+.+.+||...+.....+ .+..... ..-+-++++.-++|+|+. -+.|.+|+......-..+.||++
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv--~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSV--FGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhc-CCCceEEEEeEEEEeccCcEEEEEeccc--cccEEEEeccccCCcceecccCC
Confidence 33556666789999999887776554 3331011 112335788889999976 77999999884443346899999
Q ss_pred ceeEEEECCCCCEEEEEc--CEEEEEEcCcceeee-eeecCCcccceeEEEEccCCCEEEEECCC-cEEEEEcccCccce
Q 047837 90 GVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVM-KLKANSSCSAITSACFSSDAKFIVTAGKK-HLKFWTIGSSATAR 165 (882)
Q Consensus 90 ~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~-~~~~~~~~~~v~~l~fs~d~~~l~~~~~~-~i~iwd~~~~~~~~ 165 (882)
.|-++.|+-||+++++++ .++++|++++++... ..-+|. .+|..+.|.|+ .+++++.+ +.++|+.+..+..
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs--aRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~- 251 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS--ARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE- 251 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc--ceeEEEEeccc--eeEEeccceEEEEEecccceeh-
Confidence 999999999999999999 999999999998776 555665 99999999999 88888874 7999977654430
Q ss_pred eccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeee
Q 047837 166 TRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKN 245 (882)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 245 (882)
.+..|. .+.+.
T Consensus 252 --------~y~~h~-------------------------------------------------------------g~~iw 262 (967)
T KOG0974|consen 252 --------VYDEHS-------------------------------------------------------------GKGIW 262 (967)
T ss_pred --------hhhhhh-------------------------------------------------------------hccee
Confidence 111111 12236
Q ss_pred eEEEecCCCEEEEEecCCeEEeeeccc
Q 047837 246 GFALSASSKLIACACSNGAVHLFDIQS 272 (882)
Q Consensus 246 ~~~~s~d~~~l~~~~~dg~I~vwd~~~ 272 (882)
.++..++...+++++.||.+++|++..
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhhc
Confidence 788889999999999999999999864
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.4e-12 Score=138.10 Aligned_cols=137 Identities=23% Similarity=0.211 Sum_probs=97.5
Q ss_pred eEEEeec-------eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec-CCCCeEEEEECCCceeeEEeec
Q 047837 15 KCAYVAG-------CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES-GPQPAVLVWDCANLAFISELKG 86 (882)
Q Consensus 15 ~~~~~~~-------~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~-~~d~~I~vwd~~t~~~~~~l~~ 86 (882)
+++|... ..|.++|.+...... +..+. ..+.+.+|||||+.||..+. .++..|++||+.+++... +..
T Consensus 165 riayv~~~~~~~~~~~l~~~d~dg~~~~~-lt~~~--~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~ 240 (429)
T PRK03629 165 RIAYVVQTNGGQFPYELRVSDYDGYNQFV-VHRSP--QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS 240 (429)
T ss_pred eEEEEEeeCCCCcceeEEEEcCCCCCCEE-eecCC--CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC
Confidence 5666643 279999998665544 44455 68999999999999997643 235689999999886432 222
Q ss_pred cccceeEEEECCCCCEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--CcEEEEEc
Q 047837 87 HLYGVECIAFSPDGEHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--KHLKFWTI 158 (882)
Q Consensus 87 h~~~V~~lafspdg~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~iwd~ 158 (882)
..+.+..++|||||++|+... ..|++||+.+++...... +. ..+....|+|||+.|+..++ +...+|.+
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CC--CCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 333455789999999998653 369999999887654333 22 56788999999998887765 34455543
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.2e-12 Score=129.39 Aligned_cols=278 Identities=12% Similarity=0.090 Sum_probs=193.1
Q ss_pred CCCCcceeeeccCCCcEE-EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 369 HDPSVSCVARGCTGGVSF-STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
|...-+.|..+ +||+++ ++|..--.|++||+..-..-..-....+.+.+.+... ...
T Consensus 50 ~p~ast~ik~s-~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsD---------------------D~S 107 (703)
T KOG2321|consen 50 MPTASTRIKVS-PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSD---------------------DYS 107 (703)
T ss_pred CccccceeEec-CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEecc---------------------chh
Confidence 55666677777 788775 6777888999999986544333223333322222221 111
Q ss_pred EEEEcCCCCEEEeeeccceE---------EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec
Q 047837 448 SMAVSSRGSTLLLDAHDAEI---------LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD 518 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 518 (882)
-+.+-.+.+++.+.+..+.- ..++++.... -|+.++....|+-+++..+ ..+..+..
T Consensus 108 K~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~sc-------------Dly~~gsg~evYRlNLEqG-rfL~P~~~ 173 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSC-------------DLYLVGSGSEVYRLNLEQG-RFLNPFET 173 (703)
T ss_pred hheEeecCceeeehhhcCeeeeeecCcCCccccccCCCc-------------cEEEeecCcceEEEEcccc-cccccccc
Confidence 11111122222221111111 1222222221 2555555567888999887 67777777
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccC-----CceEEEEEecCCCEEEEEeCCCcEE
Q 047837 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQ-----GTVYDMDIDPTMEVVITVGQDKKIN 593 (882)
Q Consensus 519 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~~d~~v~ 593 (882)
....++++..++-..+|++|+.+|.|..||.+....+..+........+. ..|+++.|+.+|-.+++|..+|.+.
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~ 253 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL 253 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEE
Confidence 77899999999988899999999999999999777666554433322222 3599999999999999999999999
Q ss_pred EEEccCCceEEEEEeccCCCCcEEEEECCC--CCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEE
Q 047837 594 SFSIAAGKLIRSFKQAKDFGDPMKVTVDPS--GSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVS 671 (882)
Q Consensus 594 iwd~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s 671 (882)
|||+++.+++..-. ++..-+|..+.|.+. +..|++. ....++|||-.+|+....+. .+..+..+|+-|++.++++
T Consensus 254 iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 254 IYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred EEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEE
Confidence 99999988877654 566778999999775 4455555 45689999999999998887 4556999999999999999
Q ss_pred EeCCCeEEEEeCCC
Q 047837 672 VGGDGLQRVKEKYG 685 (882)
Q Consensus 672 ~~~dg~i~vwd~~~ 685 (882)
+-.++.+..|=+..
T Consensus 331 Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 331 ANESSKMHTYYIPS 344 (703)
T ss_pred ecCCCcceeEEccc
Confidence 99988888777764
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2e-12 Score=125.04 Aligned_cols=214 Identities=11% Similarity=0.129 Sum_probs=164.3
Q ss_pred EEEEEcCCCcEEEEEcCCCc---eeEEEeecCCCCEEEEEEccCCC-EEEEEeCC--CeEEEEeCccCccceeeeccce-
Q 047837 491 FLASGGRDRTIHLYDVKRNF---DLIESIDDHSAAVTAVKFTCNGR-KILSCSAD--RSLVVRDVVETNSAYKISRRHQ- 563 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~- 563 (882)
.|++|-.+|.+.+|....+. ..+..+..+ ..+..+.-++... .+++|+.. ..+.+||++...+.........
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 68888999999999987431 122223322 4566666666444 45568888 7899999986644333211111
Q ss_pred e--cccCCceEEEEEecC--CCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 047837 564 Q--LASQGTVYDMDIDPT--MEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICL 638 (882)
Q Consensus 564 ~--~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~i 638 (882)
. +.-.-.++++.|-+. ...||+++.-+.+++||.+.+ +++..+. -...+++++...|+|+++.+|..-|.+..
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd--~~E~~is~~~l~p~gn~Iy~gn~~g~l~~ 273 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD--FLENPISSTGLTPSGNFIYTGNTKGQLAK 273 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec--cccCcceeeeecCCCcEEEEecccchhhe
Confidence 0 111235678889887 789999999999999999875 4666776 56789999999999999999999999999
Q ss_pred EEccCCeEEEE-EccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCC
Q 047837 639 YDFISGEMVAK-AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEE 707 (882)
Q Consensus 639 wd~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~ 707 (882)
||.+.++.+.. +.+..+.|+++..+|..++|+++|-|..+||+|+.+...+.........+.+++.++.
T Consensus 274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 99999998877 8899999999999999999999999999999999997776666556666667765554
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=2.3e-11 Score=114.64 Aligned_cols=296 Identities=18% Similarity=0.242 Sum_probs=189.5
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC-----CCeEEEEECCC
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP-----QPAVLVWDCAN 77 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~-----d~~I~vwd~~t 77 (882)
+-+++|+-|.+ -++.+.+.-.+||+.+=-+.......+. +++.-+..---.++||....+. ...|.|||=..
T Consensus 8 ~lsvs~NQD~S-cFava~~~Gfriyn~~P~ke~~~r~~~~--~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHS-CFAVATDTGFRIYNCDPFKESASRQFID--GGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCc-eEEEEecCceEEEecCchhhhhhhcccc--CchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 44577888865 4455556668999987533333322233 2222222222345666543222 25799999777
Q ss_pred ceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcC-cceeeeeeecCCcccceeEEEEccCCCEEEEECC--CcE
Q 047837 78 LAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWR-SAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--KHL 153 (882)
Q Consensus 78 ~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~-~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i 153 (882)
.+++.+|. ...+|.++.+++| +|+..- +.|+||... +-++++.+.....+....++.-..+..+||.=|. |+|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 88888887 6788999999876 577777 999999988 5677777766554455555554445566666564 789
Q ss_pred EEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCc
Q 047837 154 KFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGL 233 (882)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~ 233 (882)
+|-|+...... ....+..|
T Consensus 162 Qi~dL~~~~~~------~p~~I~AH------------------------------------------------------- 180 (346)
T KOG2111|consen 162 QIVDLASTKPN------APSIINAH------------------------------------------------------- 180 (346)
T ss_pred EEEEhhhcCcC------CceEEEcc-------------------------------------------------------
Confidence 99998755430 11222233
Q ss_pred eeeeEeeceeeeeEEEecCCCEEEEEecCCe-EEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCC
Q 047837 234 SVTKSVDLKVKNGFALSASSKLIACACSNGA-VHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPN 312 (882)
Q Consensus 234 ~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (882)
...+.|++++.+|.++|+++..|+ |||||..+|..+.++.. ......
T Consensus 181 -------~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-------------------------G~d~A~ 228 (346)
T KOG2111|consen 181 -------DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-------------------------GVDRAD 228 (346)
T ss_pred -------cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec-------------------------CCchhe
Confidence 333489999999999999999987 69999999998877651 124456
Q ss_pred cEEEeecCCCeEEEEeC-CceEEEEEcccccccce-------ee-eeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 313 AIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEATR-------CC-VLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~~-------~~-~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
+.+++|+|+..++++++ .|++.|+.+........ .. .+..--+..|++.-. ....+....++|. .+.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f---~l~~~~~~~~~fg-~~~ 304 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKF---QLPQGTQCIIAFG-SET 304 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEE---EccCCCcEEEEec-CCC
Confidence 78999999999777766 68999999876432221 00 111111112332221 1124566667787 555
Q ss_pred cEEEEeeCCCcEEEEecC
Q 047837 384 VSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~ 401 (882)
+.++..+.||+-.-+.+.
T Consensus 305 nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 305 NTVIAICADGSYYKFKFD 322 (346)
T ss_pred CeEEEEEeCCcEEEEEec
Confidence 677777788887655443
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.7e-12 Score=124.01 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=143.4
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-cCCCCEEEEEEcc-CCCEEEEEeCCC
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-DHSAAVTAVKFTC-NGRKILSCSADR 542 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~-~~~~l~s~~~dg 542 (882)
-.+..++|++.-. -+|++..|-.|++||-.. .....++ .....|++++|-| .++.|+.++..|
T Consensus 99 ~dlr~~aWhqH~~-------------~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr~g 163 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-------------AFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG 163 (445)
T ss_pred cceeeEeechhhh-------------hhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeecce
Confidence 3455667776543 588889999999999765 3333333 3456799999999 456788888877
Q ss_pred eEEEEeCccCccceee----eccce---ecccCCceEEEEEecCCCEEEEEeC-CCcEEEEEccCCceEEEEEeccCCCC
Q 047837 543 SLVVRDVVETNSAYKI----SRRHQ---QLASQGTVYDMDIDPTMEVVITVGQ-DKKINSFSIAAGKLIRSFKQAKDFGD 614 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~----~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~ 614 (882)
|.+|.........+. ...+. .......|+++.|.+||..+++++. |..|.|||..++..+.... ...+.
T Consensus 164 -IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg 240 (445)
T KOG2139|consen 164 -ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGG 240 (445)
T ss_pred -eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCc
Confidence 999987643222111 10000 0112258999999999999999885 5689999999998776654 45678
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEEc-cCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 615 PMKVTVDPSGSYLVCSYSNKSICLYDF-ISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 615 v~~~~~spdg~~l~~~~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
++-+.|||||.+|+++.-|+..++|.. ++.....-.. -.+.|...+|+|+|++|+-+.. |.-++|.+.
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 889999999999999999999999954 3444333333 4569999999999998775553 444566664
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.1e-11 Score=134.11 Aligned_cols=215 Identities=13% Similarity=0.145 Sum_probs=137.2
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEc---CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE-
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG---RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC- 538 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~---~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~- 538 (882)
+...+...+|+|+++ .|+..+ .+..+++|++.++. . ..+......+..++|+|||+.|+..
T Consensus 197 ~~~~~~~p~wSPDG~-------------~la~~s~~~g~~~i~i~dl~~G~-~-~~l~~~~~~~~~~~~SPDG~~La~~~ 261 (429)
T PRK03629 197 SPQPLMSPAWSPDGS-------------KLAYVTFESGRSALVIQTLANGA-V-RQVASFPRHNGAPAFSPDGSKLAFAL 261 (429)
T ss_pred CCCceeeeEEcCCCC-------------EEEEEEecCCCcEEEEEECCCCC-e-EEccCCCCCcCCeEECCCCCEEEEEE
Confidence 445677778888776 555432 34579999987752 2 2222233345578999999998865
Q ss_pred eCCC--eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC-C--cEEEEEccCCceEEEEEeccCCC
Q 047837 539 SADR--SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD-K--KINSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 539 ~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
+.+| .|++||+.++.. .++... ...+....|+|||+.|+..+.+ + .|.++|+.+++.. .+. ....
T Consensus 262 ~~~g~~~I~~~d~~tg~~-~~lt~~------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt--~~~~ 331 (429)
T PRK03629 262 SKTGSLNLYVMDLASGQI-RQVTDG------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT--WEGS 331 (429)
T ss_pred cCCCCcEEEEEECCCCCE-EEccCC------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee--cCCC
Confidence 4444 588899876532 222211 2356789999999988877654 4 4555577666543 333 2334
Q ss_pred CcEEEEECCCCCEEEEEeCC---CcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCe---EEEEeCCCCC
Q 047837 614 DPMKVTVDPSGSYLVCSYSN---KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGL---QRVKEKYGIL 687 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~---i~vwd~~~~~ 687 (882)
......|+|||++|+..+.+ ..|++||+.+++.. .+.. ........|+|||++|+.++.++. +.++++.+..
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 55678999999999876543 35889999888643 3432 223456789999999999987764 6778876544
Q ss_pred CCcccCCCCCcccEEEe
Q 047837 688 PPRNFAQPAALSPIIFC 704 (882)
Q Consensus 688 ~~~~~~~~~~~~~~~~s 704 (882)
......++..+....|+
T Consensus 410 ~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 410 KARLPATDGQVKFPAWS 426 (429)
T ss_pred eEECccCCCCcCCcccC
Confidence 33322233334444444
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=4.2e-12 Score=122.82 Aligned_cols=166 Identities=14% Similarity=0.245 Sum_probs=133.7
Q ss_pred EEEEEcCC--CcEEEEEcCCCceeEEEeec---------CCCCEEEEEEccC--CCEEEEEeCCCeEEEEeCccCcccee
Q 047837 491 FLASGGRD--RTIHLYDVKRNFDLIESIDD---------HSAAVTAVKFTCN--GRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 491 ~l~~g~~d--g~v~iwd~~~~~~~~~~~~~---------h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
++++|+.. ..+.|||+... +.+-.-+. -.-.++++.|-+. ...||+++.-+.+++||.+.++....
T Consensus 163 Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred eEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 78889998 88999999875 33222111 1234678999887 88999999999999999997665544
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEE-EEeccCCCCcEEEEECCCCCEEEEEeCCCcE
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRS-FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSI 636 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i 636 (882)
.+... ..+++++...|+++++++|..-+.+..||++.++.+.. +. +-.+.|+++..+|.+++||+++-|..+
T Consensus 242 ~fd~~-----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k--g~tGsirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 242 QFDFL-----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK--GITGSIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred Eeccc-----cCcceeeeecCCCcEEEEecccchhheecccCceeeccccC--CccCCcceEEEcCCCceEEeeccceeE
Confidence 43332 36899999999999999999999999999999998877 65 888999999999999999999999999
Q ss_pred EEEEccCCeEEEEEccCCCCeEEEEECCC
Q 047837 637 CLYDFISGEMVAKAMGHGEVITGVTFLPD 665 (882)
Q Consensus 637 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~d 665 (882)
||+|+++.++++... -...++++.+.++
T Consensus 315 RIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 315 RIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred EEeecccchhhhhhh-hhccccEEEecCC
Confidence 999999977766543 3456677777554
No 238
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=8.5e-11 Score=117.86 Aligned_cols=134 Identities=15% Similarity=0.167 Sum_probs=94.9
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEE
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVT 619 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 619 (882)
..++++++..... .... .-.++|..++|.|.++.+++.+ .+..+.++|++.. +...+ ....-..+.
T Consensus 255 snLyl~~~~e~~i--~V~~-----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~----Pe~~rNT~~ 322 (561)
T COG5354 255 SNLYLLRITERSI--PVEK-----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF----PEQKRNTIF 322 (561)
T ss_pred ceEEEEeeccccc--ceec-----cccccceeeeecccCCceeEEecccccceeecccccc-eEEec----CCccccccc
Confidence 4577777762221 1111 1236999999999998776655 6789999999855 44443 344556788
Q ss_pred ECCCCCEEEEEeCC---CcEEEEEccCCeEEE-EEccCCCCeEEEEECCCCCEEEEEe------CCCeEEEEeCCCCCCC
Q 047837 620 VDPSGSYLVCSYSN---KSICLYDFISGEMVA-KAMGHGEVITGVTFLPDCKHIVSVG------GDGLQRVKEKYGILPP 689 (882)
Q Consensus 620 ~spdg~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~l~~s~d~~~l~s~~------~dg~i~vwd~~~~~~~ 689 (882)
|||.+++++.++-| |.|-+||......+. .+.+. .-+-+.|+||++++.+.. .|..|+|||+.+....
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 99999999987654 689999987654443 56543 334567999999988764 4788999999876544
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-11 Score=135.04 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=100.6
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec-CCCCeEEEEECCCceeeEEeeccccceeEEEECCCCC
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES-GPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGE 101 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~-~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~ 101 (882)
.|.++|.+.... +.+..|. ..+.+.+|||||+.||..+. +++..|++||+.+++. ..+..+.+.+.+.+|||||+
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~--~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGS--SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECCCCCCc-EEEecCC--CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC
Confidence 799999875554 4556776 78999999999999988753 3357899999998876 34566777788999999999
Q ss_pred EEEEE-c----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--C--cEEEEEcccCc
Q 047837 102 HLVTV-G----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--K--HLKFWTIGSSA 162 (882)
Q Consensus 102 ~Las~-~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~--~i~iwd~~~~~ 162 (882)
.|+.. + ..|++||+.+++.. .+..+. .......|+|||+.|+..++ + .|.+||+.++.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~--~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP--AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE-EccCCC--CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 88644 3 46888899887654 344443 55678999999999888764 3 47777765543
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=9.1e-12 Score=135.57 Aligned_cols=132 Identities=22% Similarity=0.183 Sum_probs=95.6
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC-CCCeEEEEECCCceeeEEeeccccceeEEEECCCCC
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG-PQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGE 101 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~-~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~ 101 (882)
.|.+||...... +.+..|. ..+.+.+|||||+.||..+.. .+..|++||+.+++.. .+..+.+...+++|||||+
T Consensus 185 ~l~i~D~~g~~~-~~lt~~~--~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 185 ALQVADSDGYNP-QTILRSA--EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEECCCCCCc-eEeecCC--CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCC
Confidence 699999875544 4455666 689999999999999987642 3457999999988753 3444455566899999999
Q ss_pred EEEEE-c----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--Cc--EEEEEcccC
Q 047837 102 HLVTV-G----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--KH--LKFWTIGSS 161 (882)
Q Consensus 102 ~Las~-~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~--i~iwd~~~~ 161 (882)
.|+.. + ..|++||+.+++... +..+. ......+|+|||+.|+..++ +. |.++++.++
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~--~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF--GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-CccCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 88644 3 479999999887543 44332 45567899999999888765 34 555555444
No 241
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.47 E-value=1.4e-08 Score=118.15 Aligned_cols=516 Identities=14% Similarity=0.157 Sum_probs=276.0
Q ss_pred CeEEEEEcCCCCEE--EEeecCCCCeEEEEECCCce---eeEEee-----ccccceeEEEECCCCCEEEEEc--CEEEEE
Q 047837 46 PLCCVAMSRDGRYV--AAGESGPQPAVLVWDCANLA---FISELK-----GHLYGVECIAFSPDGEHLVTVG--GYIYLW 113 (882)
Q Consensus 46 ~I~~va~spdg~~l--a~g~~~~d~~I~vwd~~t~~---~~~~l~-----~h~~~V~~lafspdg~~Las~~--~~i~iW 113 (882)
.+...+|.++...+ +.+....+..|.+....... .+..+. ...+.|.++.|-+|...|+.+. |.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 56667776655443 33322222344444443222 333333 2456899999999887666655 999999
Q ss_pred ----EcCcc--eeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccc
Q 047837 114 ----NWRSA--MLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGI 186 (882)
Q Consensus 114 ----d~~~g--~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 186 (882)
|..+. +.+..+. ..|.+++||||+.+|+.... +++.+.+-.-.-..+... ...-.+..+++.
T Consensus 103 ~~~~~~~~~~~E~VG~vd-----~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l---~~~~~~~~~~Vs--- 171 (928)
T PF04762_consen 103 REDPDPDEDEIEIVGSVD-----SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPL---DSDDFGESKHVS--- 171 (928)
T ss_pred EccCCCCCceeEEEEEEc-----CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeec---CccccCCCceee---
Confidence 54444 3344443 78999999999999988865 676654322111100000 011111222332
Q ss_pred cccceEEEeeecccccCCcccccccCceeE--EEE----EccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEe
Q 047837 187 QKESYFVSVISATWTDNGVVNQEQAGESFT--IYA----LTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACAC 260 (882)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~ 260 (882)
..|.....--....++... .-. -.+.+.+- ++.+. ..++|-.||+++|+.+
T Consensus 172 -----------VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~-----------~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 172 -----------VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGR-----------VRISWRGDGEYFAVSS 228 (928)
T ss_pred -----------eccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCc-----------eEEEECCCCcEEEEEE
Confidence 3343221111111110000 000 01112222 22222 6789999999999987
Q ss_pred c------CCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeC----C
Q 047837 261 S------NGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYG----D 330 (882)
Q Consensus 261 ~------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~----d 330 (882)
. -..||||+-+ |+....-. +..+---+++|-|.|.++++.. .
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE---------------------------~v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSE---------------------------PVDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccc---------------------------cCCCccCCccCCCCCCEEEEEEEcCCC
Confidence 5 2578999977 44322111 0111112589999999999875 3
Q ss_pred ceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecc
Q 047837 331 HSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDV 410 (882)
Q Consensus 331 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 410 (882)
..|.+|.-...+.. . +.+. +......|..+.|+ .++..||..-.|. |++|-..+-.-..+..
T Consensus 281 ~~VvFfErNGLrhg----------e--F~l~----~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 281 HDVVFFERNGLRHG----------E--FTLR----FDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred cEEEEEecCCcEee----------e--EecC----CCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 56666665432211 1 1111 11235567888998 8999999877664 9999887644322210
Q ss_pred cCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCce
Q 047837 411 LGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHY 490 (882)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 490 (882)
+.+ .....+..+.|+|... .
T Consensus 343 --------------------------------------i~~----------~~~~~~~~~~Wdpe~p------------~ 362 (928)
T PF04762_consen 343 --------------------------------------IRF----------SSSESVNFVKWDPEKP------------L 362 (928)
T ss_pred --------------------------------------EEc----------cCCCCCCceEECCCCC------------C
Confidence 111 1122233377877655 2
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCC-EEEEEeCCCeEEEEeCccCccceeeeccceecccCC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQG 569 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 569 (882)
.|.....+|.+..+++.-. +..-.+ .+|+.. .+++.. ...+.+-.++.......+ .+..+.-..
T Consensus 363 ~L~v~t~~g~~~~~~~~~~---v~~s~~---------~~~~D~g~vaVID-G~~lllTpf~~a~VPPPM--s~~~l~~~~ 427 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWD---VSRSPG---------SSPNDNGTVAVID-GNKLLLTPFRRAVVPPPM--SSYELELPS 427 (928)
T ss_pred EEEEEecCCcEEEEEEEEE---EEecCC---------CCccCceEEEEEe-CCeEEEecccccCCCchH--hceEEcCCC
Confidence 5666666677777665311 111111 011111 222222 234666666543322222 122233346
Q ss_pred ceEEEEEecCCCEEEEEeCCCcEEEEEccCCce--------EEEEEe--------ccCCCCcEEEEECCCCCEEEEEeCC
Q 047837 570 TVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL--------IRSFKQ--------AKDFGDPMKVTVDPSGSYLVCSYSN 633 (882)
Q Consensus 570 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--------~~~~~~--------~~~~~~v~~~~~spdg~~l~~~~~d 633 (882)
.|.+++|++++..+++-..||.|.+|....... ...+.. ......+..++|..+..+++....+
T Consensus 428 ~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 428 PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred CcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 899999999998899999999999998543321 111110 0124457788888888777766554
Q ss_pred ---CcEEEEEccCC---eEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc-ccCCCCCcccEEEecC
Q 047837 634 ---KSICLYDFISG---EMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR-NFAQPAALSPIIFCEE 706 (882)
Q Consensus 634 ---g~i~iwd~~~~---~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~s~~ 706 (882)
..+.+++.... ..+.....-.+.+..+...++...++.-..||.+...+..+..... .+..+-....++....
T Consensus 508 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~ 587 (928)
T PF04762_consen 508 SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQING 587 (928)
T ss_pred cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECC
Confidence 67888887433 2333333345566666666666556777789988877666544332 3333333333444444
Q ss_pred CC---eEEEeccc
Q 047837 707 ED---QKCRMDSV 716 (882)
Q Consensus 707 ~~---~~~~~~~~ 716 (882)
.. .++.+...
T Consensus 588 ~~~~~~~~GLs~~ 600 (928)
T PF04762_consen 588 SEDKRVLFGLSSN 600 (928)
T ss_pred ccceeEEEEECCC
Confidence 33 44444433
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=2.5e-13 Score=133.79 Aligned_cols=266 Identities=12% Similarity=0.123 Sum_probs=191.2
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeE
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKL 324 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 324 (882)
..+.++.+|++|+.|+..|.|-.+|..+++....+.. ...+..+.|-.+.++
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----------------------------~Etv~Dv~~LHneq~ 184 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----------------------------METVRDVTFLHNEQF 184 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh----------------------------hhhhhhhhhhcchHH
Confidence 5678899999999999999999999999887766542 122346778888899
Q ss_pred EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCc
Q 047837 325 VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQS 404 (882)
Q Consensus 325 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~ 404 (882)
+++.....++|||-...+. .-+.. ...|..+.|. |-.-+|++++..|.++--|+.+++
T Consensus 185 ~AVAQK~y~yvYD~~GtEl----HClk~-----------------~~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~Gk 242 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNNGTEL----HCLKR-----------------HIRVARLEFL-PYHFLLVAASEAGFLKYQDVSTGK 242 (545)
T ss_pred HHhhhhceEEEecCCCcEE----eehhh-----------------cCchhhhccc-chhheeeecccCCceEEEeechhh
Confidence 9999999999999764321 11221 2345555555 677789999999999999999998
Q ss_pred eeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcccee
Q 047837 405 ELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEE 484 (882)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 484 (882)
.+..... ..+.+..++-+|-..
T Consensus 243 lVa~~~t---------------------------------------------------~~G~~~vm~qNP~Na------- 264 (545)
T KOG1272|consen 243 LVASIRT---------------------------------------------------GAGRTDVMKQNPYNA------- 264 (545)
T ss_pred hhHHHHc---------------------------------------------------cCCccchhhcCCccc-------
Confidence 7654332 233444455555554
Q ss_pred ccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeecccee
Q 047837 485 VTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQ 564 (882)
Q Consensus 485 ~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 564 (882)
.+-+|..+|+|.+|..... +++..+..|.++|.+|++.++|+++|+.+.|..++|||++...........
T Consensus 265 ------Vih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--- 334 (545)
T KOG1272|consen 265 ------VIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP--- 334 (545)
T ss_pred ------eEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---
Confidence 7899999999999998876 666677789999999999999999999999999999999976644444332
Q ss_pred cccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc-CC--ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC
Q 047837 565 LASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA-AG--KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK 634 (882)
Q Consensus 565 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~--~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg 634 (882)
.....+++|..| +++++....|.+|.=. .+ ..-.-+..+...+.|..+.|.|-...|-+|...|
T Consensus 335 ----~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 335 ----HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ----CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 266778888655 4444566678999532 21 1111122123345788888888766666654444
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1.5e-09 Score=118.68 Aligned_cols=261 Identities=18% Similarity=0.250 Sum_probs=165.7
Q ss_pred CeEEEeeceEEEEEECCCCceEEE------EEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecc
Q 047837 14 SKCAYVAGCVLVVYDVDSSTQSHL------MVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGH 87 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~~~~~------l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h 87 (882)
.++...+|..|.+||+.++..+.. +..|..++.+.+ .+.++.++.. -..+.+=+. ..+....+.
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l-----~~~~~v~~~~--~~~v~~~~~-~~~~~~~~s-- 87 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL-----LSGKIVTCAK--SDEVYVKEA-SNQIIERFS-- 87 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhccccccccccccee-----ccceEEEEEe--ecceeecch-hhhhhhhcc--
Confidence 378888899999999998875543 233421112211 1223333322 111222111 111122222
Q ss_pred ccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCccc--ceeEEEEccCCCEEEEECC-CcEEEEEcccCc
Q 047837 88 LYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCS--AITSACFSSDAKFIVTAGK-KHLKFWTIGSSA 162 (882)
Q Consensus 88 ~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~--~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~ 162 (882)
+.|..-.+..+.+.++.+. ..+.|||+..+..+.++......- ...-+-++++.-+++++.- +.|.+|+....+
T Consensus 88 -~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 -DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred -ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 2333355555666666655 999999999888877766543111 1222345667677777776 899999986322
Q ss_pred cceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeece
Q 047837 163 TARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLK 242 (882)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~ 242 (882)
. ...+.+|...+
T Consensus 167 ~--------p~~l~GHeG~i------------------------------------------------------------ 178 (967)
T KOG0974|consen 167 K--------PIRLKGHEGSI------------------------------------------------------------ 178 (967)
T ss_pred C--------cceecccCCce------------------------------------------------------------
Confidence 2 11233343332
Q ss_pred eeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCC
Q 047837 243 VKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSE 322 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 322 (882)
..+.++.||.++++.+.|.++|+|++++.+...- ...+|...+..+.|.|.
T Consensus 179 --F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--------------------------~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 179 --FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--------------------------TGFGHSARVWACCFLPN- 229 (967)
T ss_pred --EEEEEccCCcEEEEEecCcceeeeecccccccCc--------------------------ccccccceeEEEEeccc-
Confidence 6788999999999999999999999998766541 12246666779999999
Q ss_pred eEEEEeCCceEEEEEcccccccceeeeeecCcc-eeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC
Q 047837 323 KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSA-CIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 323 ~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~ 401 (882)
++++++.|-+.++|+.+..+. ..+.+|.+ .+|.+.. . .+...++|++.|+.+++|++.
T Consensus 230 ~i~t~gedctcrvW~~~~~~l----~~y~~h~g~~iw~~~~----------------~-~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQL----EVYDEHSGKGIWKIAV----------------P-IGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred eeEEeccceEEEEEeccccee----hhhhhhhhcceeEEEE----------------c-CCceEEEeeccCcchhhhhhh
Confidence 899999999999997655332 24555543 3454443 3 667788999999999999987
Q ss_pred CC
Q 047837 402 LQ 403 (882)
Q Consensus 402 ~~ 403 (882)
..
T Consensus 289 ~r 290 (967)
T KOG0974|consen 289 GR 290 (967)
T ss_pred cc
Confidence 53
No 244
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.46 E-value=1.6e-09 Score=107.59 Aligned_cols=171 Identities=14% Similarity=0.178 Sum_probs=129.9
Q ss_pred ceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCC-eEEEEeCccCccceeeeccceeccc
Q 047837 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR-SLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 489 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
|.+++..+. |...|.+...+. . .-.+|...|.-..+.-+++-++.|..|| .+-++|..+++. .++....
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~-~--iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~l----- 401 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGY-S--IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDL----- 401 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCe-e--EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCc-----
Confidence 336766654 567777765442 1 2235777788888888888999999999 899999986542 2332222
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC----cEEEEEccC
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK----SICLYDFIS 643 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg----~i~iwd~~~ 643 (882)
+.|.++..+|+|++++++.....+.+.|+.+|+....-+ ...+-|+..+|+|+++++|-+--+| .|++||+.+
T Consensus 402 -g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 402 -GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred -cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 689999999999999999888899999999998755443 5677899999999999999876655 799999998
Q ss_pred CeEEEEEccCCCCeEEEEECCCCCEEEEEe
Q 047837 644 GEMVAKAMGHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 644 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
++....-. ..+.=.+-+|.||+++|.--+
T Consensus 479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 88655433 344445678999999987654
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.9e-11 Score=131.13 Aligned_cols=212 Identities=13% Similarity=0.140 Sum_probs=135.7
Q ss_pred EEEEEcCCCCE-EEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcC---CCcEEEEEcCCCceeEEEeecCCCC
Q 047837 447 RSMAVSSRGST-LLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGR---DRTIHLYDVKRNFDLIESIDDHSAA 522 (882)
Q Consensus 447 ~~~~~s~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~h~~~ 522 (882)
..+....+|.. ..+..+...+...+|+|+++ .|+..+. ...|++||+.++ ... .+......
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~-------------~la~~s~~~~~~~I~~~dl~~g-~~~-~l~~~~g~ 241 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGT-------------KLAYVSFESKKPVVYVHDLATG-RRR-VVANFKGS 241 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCC-------------EEEEEEccCCCcEEEEEECCCC-CEE-EeecCCCC
Confidence 34444455543 33446677888999999998 6665543 245999999876 322 23334455
Q ss_pred EEEEEEccCCCEEE-EEeCCCeEEEEeCccC-ccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CCcEEEEEc--
Q 047837 523 VTAVKFTCNGRKIL-SCSADRSLVVRDVVET-NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DKKINSFSI-- 597 (882)
Q Consensus 523 v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~-- 597 (882)
+...+|+|||+.|+ +.+.++...+|.+... ....++.. +........|+|||+.|+..+. ++...+|.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 67899999999887 4677777666665422 22222211 1234567889999998886654 456666654
Q ss_pred cCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC---cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 598 AAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK---SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 598 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
.+++. ..+. .........+|||||++|+..+.++ .|++||+.+++... +.. ........|+|||++|+.++.
T Consensus 316 ~~g~~-~~lt--~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAA-QRVT--FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCce-EEEe--cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEe
Confidence 44443 2232 1223345688999999998776554 69999999887543 332 234567899999999988775
Q ss_pred CC---eEEEEeCC
Q 047837 675 DG---LQRVKEKY 684 (882)
Q Consensus 675 dg---~i~vwd~~ 684 (882)
++ .+.+-++.
T Consensus 391 ~~g~~~l~~~~~~ 403 (427)
T PRK02889 391 QGGRSVLAAVSSD 403 (427)
T ss_pred cCCCEEEEEEECC
Confidence 44 34455553
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6e-11 Score=129.43 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=135.7
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEEEEc---CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEE-
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG---RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKIL- 536 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~---~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~- 536 (882)
..|...+...+|+|+++ .|+..+ .+..|++||+.++. . ..+..+...+...+|+|||+.|+
T Consensus 198 t~~~~~v~~p~wSpDG~-------------~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQ-------------EITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred ecCCCCeEeeEECCCCC-------------EEEEEEecCCCCEEEEEECCCCc-E-EEeecCCCcccCcEECCCCCEEEE
Confidence 35566778888888887 565543 34689999998762 2 34445666778899999999876
Q ss_pred EEeCCCe--EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CC--cEEEEEccCCceEEEEEeccC
Q 047837 537 SCSADRS--LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DK--KINSFSIAAGKLIRSFKQAKD 611 (882)
Q Consensus 537 s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~ 611 (882)
+.+.++. |++||+.++.. .++.. +........|+|||+.|+..+. ++ .|+++|+..++.. .+. .+
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~-~~Lt~------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt--~~ 332 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTT-TRLTD------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS--FG 332 (435)
T ss_pred EEecCCCceEEEEECCCCce-EEccC------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee--cC
Confidence 4455554 77778875432 22221 2234567899999998887764 33 6888898766544 343 23
Q ss_pred CCCcEEEEECCCCCEEEEEeCC---CcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEe
Q 047837 612 FGDPMKVTVDPSGSYLVCSYSN---KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD------GLQRVKE 682 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d------g~i~vwd 682 (882)
...+....|+|||++|+....+ ..|.+||+.++.. ..+. ....+..+.|+|||++|+..+.+ ..+.+.|
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 4556778999999999876543 3688899865543 3333 23356788999999998776543 2577778
Q ss_pred CCCCCC
Q 047837 683 KYGILP 688 (882)
Q Consensus 683 ~~~~~~ 688 (882)
+.+...
T Consensus 411 l~g~~~ 416 (435)
T PRK05137 411 LTGRNE 416 (435)
T ss_pred CCCCce
Confidence 765443
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.5e-11 Score=132.20 Aligned_cols=198 Identities=17% Similarity=0.211 Sum_probs=131.7
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcC---CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEE-E
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGR---DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKIL-S 537 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s 537 (882)
.+...+...+|+|+++ .|+..+. +..|++||+.++. . ..+..+.......+|+|||+.|+ +
T Consensus 201 ~~~~~v~~p~wSpDg~-------------~la~~s~~~~~~~l~~~dl~~g~-~-~~l~~~~g~~~~~~~SpDG~~l~~~ 265 (433)
T PRK04922 201 RSAEPILSPAWSPDGK-------------KLAYVSFERGRSAIYVQDLATGQ-R-ELVASFRGINGAPSFSPDGRRLALT 265 (433)
T ss_pred cCCCccccccCCCCCC-------------EEEEEecCCCCcEEEEEECCCCC-E-EEeccCCCCccCceECCCCCEEEEE
Confidence 3455677778888877 6665543 3469999997752 2 22333444556789999999876 4
Q ss_pred EeCCC--eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CCc--EEEEEccCCceEEEEEeccCC
Q 047837 538 CSADR--SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DKK--INSFSIAAGKLIRSFKQAKDF 612 (882)
Q Consensus 538 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~ 612 (882)
.+.+| .|++||+.++.. ..+.. +......++|+|||+.|+..+. ++. |.++|+.+++..+ +. .+.
T Consensus 266 ~s~~g~~~Iy~~d~~~g~~-~~lt~------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt--~~g 335 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQL-TRLTN------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT--FQG 335 (433)
T ss_pred EeCCCCceEEEEECCCCCe-EECcc------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee--cCC
Confidence 45555 599999986542 22211 1234567899999998887764 444 6777777666433 32 122
Q ss_pred CCcEEEEECCCCCEEEEEeCCC---cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCC
Q 047837 613 GDPMKVTVDPSGSYLVCSYSNK---SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD---GLQRVKEKYGI 686 (882)
Q Consensus 613 ~~v~~~~~spdg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d---g~i~vwd~~~~ 686 (882)
......+|||||++|+..+.++ .|++||+.+++.. .+. +........|+|||++|+..+.+ +.+.++++.+.
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 3455789999999998765433 6999999888754 343 33345678999999988877653 36778887654
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.9e-11 Score=131.08 Aligned_cols=220 Identities=14% Similarity=0.179 Sum_probs=141.5
Q ss_pred CCCCcceeeeccCCCcEEEEeeCC---CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSAD---GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
+...+.+.+|+ |+|+.|+..+.+ ..|.+||+.+++...
T Consensus 194 ~~~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------------------------- 234 (427)
T PRK02889 194 SPEPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------------------------- 234 (427)
T ss_pred CCCCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------------------------
Confidence 34566777888 789888877643 359999998765321
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEE-EEEcCCCcEEEEEcCCCceeEEEeecCCCCEE
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFL-ASGGRDRTIHLYDVKRNFDLIESIDDHSAAVT 524 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~ 524 (882)
+....+.+...+|+|+++ .| ++.+.++...||.+.........+..+.....
T Consensus 235 --------------l~~~~g~~~~~~~SPDG~-------------~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~ 287 (427)
T PRK02889 235 --------------VANFKGSNSAPAWSPDGR-------------TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDT 287 (427)
T ss_pred --------------eecCCCCccceEECCCCC-------------EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCc
Confidence 111122334566777766 44 45677777777665432223445555655667
Q ss_pred EEEEccCCCEEEEEeC-CCeEEEEeCccC-ccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC---cEEEEEccC
Q 047837 525 AVKFTCNGRKILSCSA-DRSLVVRDVVET-NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK---KINSFSIAA 599 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~-dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~iwd~~~ 599 (882)
...|+|||+.|+..+. ++...+|.+... .....+... .......+|+|||++|+..+.++ .|.+||+.+
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC------CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 7899999999886654 456667665422 122222111 12334678999999998877654 699999998
Q ss_pred CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC---cEEEEEccCCeEEEEEccCCCCeEEEEECCC
Q 047837 600 GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK---SICLYDFISGEMVAKAMGHGEVITGVTFLPD 665 (882)
Q Consensus 600 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d 665 (882)
++... +. . ........|+|||++|+..+.++ .+++.++ +|+....+..+.+.+...+|+|-
T Consensus 362 g~~~~-lt--~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 362 GQVTA-LT--D-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCeEE-cc--C-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 87543 32 1 12346789999999988776544 3666666 56666667667778888889873
No 249
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=4.8e-08 Score=113.83 Aligned_cols=506 Identities=14% Similarity=0.171 Sum_probs=271.2
Q ss_pred CccccCCCCCeEEEeeceEEEEE----ECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVY----DVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF 80 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vw----d~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~ 80 (882)
++.|-+|....++..++|.|.+. |..+... ...|.-. .+|.|++||||+.+||..+. ++++.+-+ .+.++
T Consensus 80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd-~GI~a~~WSPD~Ella~vT~--~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 80 SFQYLADSESLCIALASGDIILVREDPDPDEDEI--EIVGSVD-SGILAASWSPDEELLALVTG--EGNLLLMT-RDFDP 153 (928)
T ss_pred EEEeccCCCcEEEEECCceEEEEEccCCCCCcee--EEEEEEc-CcEEEEEECCCcCEEEEEeC--CCEEEEEe-ccceE
Confidence 45677887778888888888888 5554433 3334332 79999999999999999965 66777764 45666
Q ss_pred eEEeeccccceeEEEECCCCCEEEEEc-CE-EEEEEcCcceee--------------eeeecCCcccceeEEEEccCCCE
Q 047837 81 ISELKGHLYGVECIAFSPDGEHLVTVG-GY-IYLWNWRSAMLV--------------MKLKANSSCSAITSACFSSDAKF 144 (882)
Q Consensus 81 ~~~l~~h~~~V~~lafspdg~~Las~~-~~-i~iWd~~~g~~~--------------~~~~~~~~~~~v~~l~fs~d~~~ 144 (882)
+....-+.... .....++.| |+ =--+.-..|+.. ..+. .. ..-..++|-.||++
T Consensus 154 i~E~~l~~~~~-------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~d--d~~~~ISWRGDG~y 223 (928)
T PF04762_consen 154 ISEVPLDSDDF-------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WD--DGRVRISWRGDGEY 223 (928)
T ss_pred EEEeecCcccc-------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cC--CCceEEEECCCCcE
Confidence 55544332211 112344444 11 000110111110 0111 11 45678999999999
Q ss_pred EEEECC-------CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEE
Q 047837 145 IVTAGK-------KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTI 217 (882)
Q Consensus 145 l~~~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (882)
+|+..- +.+++|+-+ |.+ .....++.
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L------------~stSE~v~---------------------------------- 256 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GEL------------QSTSEPVD---------------------------------- 256 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceE------------EeccccCC----------------------------------
Confidence 998641 358889865 222 11111110
Q ss_pred EEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEec---CCeEEeeecccceecccccccCcccCCCCCccc
Q 047837 218 YALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACS---NGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTV 294 (882)
Q Consensus 218 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (882)
| ...+++|-|.|++||+... ...|.+|+-+ |-..+.+...
T Consensus 257 ------g------------------Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~------------ 299 (928)
T PF04762_consen 257 ------G------------------LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLR------------ 299 (928)
T ss_pred ------C------------------ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecC------------
Confidence 0 0157899999999998764 3567777754 3333333211
Q ss_pred cchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcc
Q 047837 295 STAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVS 374 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~ 374 (882)
+.+....+..+.|++|+.+|+......|.+|-..+..--.+ ..+. + .....+.
T Consensus 300 -----------~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLK-qei~----------~-----~~~~~~~ 352 (928)
T PF04762_consen 300 -----------FDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLK-QEIR----------F-----SSSESVN 352 (928)
T ss_pred -----------CCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEE-EEEE----------c-----cCCCCCC
Confidence 12344556789999999988877666699998765421000 0111 0 1123344
Q ss_pred eeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCC
Q 047837 375 CVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSR 454 (882)
Q Consensus 375 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 454 (882)
.+.|++.+...|.....+|.+..+++.-.........+.. .-.+...+...+.+.. ++...+-|-
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D-----------~g~vaVIDG~~lllTp----f~~a~VPPP 417 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPND-----------NGTVAVIDGNKLLLTP----FRRAVVPPP 417 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccC-----------ceEEEEEeCCeEEEec----ccccCCCch
Confidence 5888877788888888878887666542111110000000 0000000000000000 000000000
Q ss_pred CCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee-------EEEe----------e
Q 047837 455 GSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL-------IESI----------D 517 (882)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~-------~~~~----------~ 517 (882)
-....+ .-...|.+++|+++.. .+++-..||.+.+|........ ...+ .
T Consensus 418 Ms~~~l-~~~~~v~~vaf~~~~~-------------~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (928)
T PF04762_consen 418 MSSYEL-ELPSPVNDVAFSPSNS-------------RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSE 483 (928)
T ss_pred HhceEE-cCCCCcEEEEEeCCCC-------------eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccc
Confidence 000011 2346789999999877 6888889999999985432111 1111 1
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCC---CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 047837 518 DHSAAVTAVKFTCNGRKILSCSAD---RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINS 594 (882)
Q Consensus 518 ~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i 594 (882)
.....+..++|..+...++....+ ..+.++++........... .....+.+..+...++...++.-..+|.+..
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 484 LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVES---STEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEE---EeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 123457888888777766665554 6788888753332221111 1111245555555555554666677888886
Q ss_pred EEccCCceE-EEEEeccCCCCcEEEEECCCCC---EEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEE
Q 047837 595 FSIAAGKLI-RSFKQAKDFGDPMKVTVDPSGS---YLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIV 670 (882)
Q Consensus 595 wd~~~~~~~-~~~~~~~~~~~v~~~~~spdg~---~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 670 (882)
.+....... ..|. ....-..++...+.. .++.-+..|.+++ ++..+. ..++++..+ +.+|+
T Consensus 561 ~~~~~~~~~~~~fp---~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~~tSF~v~--~~~Ll 625 (928)
T PF04762_consen 561 LSSDGELSQIVKFP---QPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SNCTSFAVT--DSFLL 625 (928)
T ss_pred eecCCCccccccCC---CCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------cCCceEEEE--cCEEE
Confidence 665433221 1221 111222222222222 3333344554443 333332 567777774 45777
Q ss_pred EEeCCCeEEEEeCC
Q 047837 671 SVGGDGLQRVKEKY 684 (882)
Q Consensus 671 s~~~dg~i~vwd~~ 684 (882)
-......+++.++.
T Consensus 626 ~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 626 FTTTQHTLKFVHLN 639 (928)
T ss_pred EEecCceEEEEECc
Confidence 77777889999888
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=2.3e-08 Score=105.24 Aligned_cols=193 Identities=16% Similarity=0.255 Sum_probs=126.1
Q ss_pred EEEEE-cCCCcEEEEEcCCCceeEEE--ee-----------cCCCCEEEEEEccCCCEEEEEe-CCCeEEEEeCccCccc
Q 047837 491 FLASG-GRDRTIHLYDVKRNFDLIES--ID-----------DHSAAVTAVKFTCNGRKILSCS-ADRSLVVRDVVETNSA 555 (882)
Q Consensus 491 ~l~~g-~~dg~v~iwd~~~~~~~~~~--~~-----------~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~ 555 (882)
+|+++ ..+|.|.++++.....+... .. .......++.|+|+++++++.. ....|.+|++......
T Consensus 100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 55555 46899999999874333222 11 1234578999999999888764 3456999999865532
Q ss_pred eeeeccceecccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcc--CCce--EEEEEec--c--CCCCcEEEEECCCCCE
Q 047837 556 YKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QDKKINSFSIA--AGKL--IRSFKQA--K--DFGDPMKVTVDPSGSY 626 (882)
Q Consensus 556 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~--~~~~--~~~~~~~--~--~~~~v~~~~~spdg~~ 626 (882)
.... ...........+.++|+|+++++.+.. .+++|.++++. +++. +..+... . .......|+++|||++
T Consensus 180 l~~~-~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 180 LTPV-DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp EEEE-EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred EEEe-eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 2221 111233445788999999999887665 46789999998 4432 2233211 1 1125788999999999
Q ss_pred EEEEe-CCCcEEEEEcc--CC--eEEEEEccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q 047837 627 LVCSY-SNKSICLYDFI--SG--EMVAKAMGHGEVITGVTFLPDCKHIVSVG-GDGLQRVKEKY 684 (882)
Q Consensus 627 l~~~~-~dg~i~iwd~~--~~--~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~ 684 (882)
|.++. ..+.|.+|++. +| +.+..+.......+.++|+|+|++|+++. .++.|.+|++.
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 87765 56789999993 34 33444444445589999999999999887 66789999874
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=4.3e-10 Score=113.81 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=97.3
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC---Cc
Q 047837 525 AVKFTCNGRKILSCS----------ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD---KK 591 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~ 591 (882)
.+-|-.+|.+|+.-- .-..+.|+.++........... ...|...+|-|.|..+++-+.+ .+
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel------ke~vi~FaWEP~gdkF~vi~g~~~k~t 471 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL------KESVIAFAWEPHGDKFAVISGNTVKNT 471 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec------chheeeeeeccCCCeEEEEEccccccc
Confidence 344555666666321 1123556666544333322222 2588999999999877765533 47
Q ss_pred EEEEEccCC----ceEEEEEeccCCCCcEEEEECCCCCEEEEE---eCCCcEEEEEccCC--eEEEEEccCCCCeEEEEE
Q 047837 592 INSFSIAAG----KLIRSFKQAKDFGDPMKVTVDPSGSYLVCS---YSNKSICLYDFISG--EMVAKAMGHGEVITGVTF 662 (882)
Q Consensus 592 v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~ 662 (882)
+.+|.+++. +++..+. ....+.+.|+|.|++++.+ +..|.+..+|+.-. +..... .| ...+.+.|
T Consensus 472 vsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh-~~at~veW 545 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EH-FAATEVEW 545 (698)
T ss_pred eeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cc-cccccceE
Confidence 999988742 3444443 3567889999999999876 45789999998742 222222 23 35678999
Q ss_pred CCCCCEEEEEeC------CCeEEEEeCCCCC
Q 047837 663 LPDCKHIVSVGG------DGLQRVKEKYGIL 687 (882)
Q Consensus 663 s~d~~~l~s~~~------dg~i~vwd~~~~~ 687 (882)
.|.|+|++|++. |.--+||+..+..
T Consensus 546 DPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 546 DPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred CCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 999999999875 4456778876643
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5.8e-10 Score=115.97 Aligned_cols=495 Identities=14% Similarity=0.165 Sum_probs=275.7
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce---------------eeEEeeccccceeEEEECCCCCEEEEEc--
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA---------------FISELKGHLYGVECIAFSPDGEHLVTVG-- 107 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~---------------~~~~l~~h~~~V~~lafspdg~~Las~~-- 107 (882)
....|++|.....|||+| |.||.++|--+.+.. .-++|.||.+.|.-+.|+.+.+.|-+.+
T Consensus 15 vkL~c~~WNke~gyIAcg--G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACG--GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEec--cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 468899999999999999 559999998776421 2356889999999999999999999998
Q ss_pred CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC-CCcEEEEEcccCccceeccccCccceeecCccccccc
Q 047837 108 GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGI 186 (882)
Q Consensus 108 ~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 186 (882)
|.|.||=+-.|.-...........-|.+++|+.||..++..- ||.|.+=.++....
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI----------------------- 149 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI----------------------- 149 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-----------------------
Confidence 999999998887665554444447899999999999887765 46666655544322
Q ss_pred cccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEE
Q 047837 187 QKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVH 266 (882)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~ 266 (882)
|.-.-.|.+ ...+.|++|.+.++.+-.+|.+.
T Consensus 150 -------------------------------wgKeLkg~~-----------------l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 150 -------------------------------WGKELKGQL-----------------LAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred -------------------------------cchhcchhe-----------------ccceeecccHHHHHhhhcCCcEE
Confidence 000001110 14678899988888888899999
Q ss_pred eeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccce
Q 047837 267 LFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATR 346 (882)
Q Consensus 267 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~ 346 (882)
+||.+.. ....+.. .+. +. ..-.|+.-+.-++. .-|.....
T Consensus 182 lydnqgn-F~~Kl~~----~c~-----Vn------------------~tg~~s~~~~kia~------i~w~~g~~----- 222 (1189)
T KOG2041|consen 182 LYDNQGN-FERKLEK----DCE-----VN------------------GTGIFSNFPTKIAE------IEWNTGPY----- 222 (1189)
T ss_pred Eeccccc-HHHhhhh----ceE-----Ee------------------eeeeecCCCccccc------eeeccCcc-----
Confidence 9987632 1111110 000 00 00001100000000 00111000
Q ss_pred eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcce
Q 047837 347 CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHL 426 (882)
Q Consensus 347 ~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (882)
. ..+|+...|+.+-..|.+++..-.......-...+.............+
T Consensus 223 --------~----------------------~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 223 --------Q----------------------PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAV 272 (1189)
T ss_pred --------c----------------------cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcE
Confidence 0 0024555666666666666655444433332223322222222222222
Q ss_pred EeeeeeeeeeeeeeccccCeEEEEEcCCCCEE-EeeeccceEEEEEEecCCCCCcccee-------ccCC------ceEE
Q 047837 427 VSAGIFERNTMETSVSTQGYRSMAVSSRGSTL-LLDAHDAEILSLSFSLSSKKDDVLEE-------VTDS------HYFL 492 (882)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~------~~~l 492 (882)
+........... ..+.-..--++|=|..+ .+......|+.++|-..+-....... +-++ ...+
T Consensus 273 LAvcG~~~da~~---~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~Tv 349 (1189)
T KOG2041|consen 273 LAVCGNDSDADE---PTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETV 349 (1189)
T ss_pred EEEccCcccccC---ccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEE
Confidence 222211111110 11111222233333332 23344555666666554431110000 0000 0011
Q ss_pred E---EEc--CCCcEEEEEcCCCceeEEEee--------------------cCC---------CCEEEEEEc---------
Q 047837 493 A---SGG--RDRTIHLYDVKRNFDLIESID--------------------DHS---------AAVTAVKFT--------- 529 (882)
Q Consensus 493 ~---~g~--~dg~v~iwd~~~~~~~~~~~~--------------------~h~---------~~v~~~~~s--------- 529 (882)
+ ++- ..-.|.+||..++.+.++... +|. +.+.-+...
T Consensus 350 Vy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~ 429 (1189)
T KOG2041|consen 350 VYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDY 429 (1189)
T ss_pred EEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCC
Confidence 1 110 012366777765432222111 111 112221111
Q ss_pred ------c-----CCCEEEEEeCCCeEEEEeCccCcccee-------------------------eecc-ceecccCCceE
Q 047837 530 ------C-----NGRKILSCSADRSLVVRDVVETNSAYK-------------------------ISRR-HQQLASQGTVY 572 (882)
Q Consensus 530 ------~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------~~~~-~~~~~~~~~v~ 572 (882)
| ++..++.++.+. +.+|.....+.... +.-. ....+..++|.
T Consensus 430 kytdirP~Fv~vn~~~vviAS~e~-~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpIC 508 (1189)
T KOG2041|consen 430 KYTDIRPKFVCVNGICVVIASEER-YFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPIC 508 (1189)
T ss_pred CcceeeeeEEEecceEEEEecccc-EEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcce
Confidence 0 233455666654 78887653221100 0000 11223445777
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc---CCeEEE-
Q 047837 573 DMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI---SGEMVA- 648 (882)
Q Consensus 573 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~---~~~~~~- 648 (882)
+++.+ .++|+.+-..|.|.-|.+...-+...+. -...+.+++.+-+...+|.-.--|.+.+.|+. +|..+.
T Consensus 509 Al~~s--dk~l~vareSG~I~rySl~nv~l~n~y~---~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~ 583 (1189)
T KOG2041|consen 509 ALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP---VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKL 583 (1189)
T ss_pred eeeec--ceEEEEEeccCceEEEEecceeeeeccc---cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeee
Confidence 77665 5788889999999999998877776663 55679999999999999988888899998886 455544
Q ss_pred EEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 649 KAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 649 ~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
.++.....|+.+.|..|...|+.--.-..+.|++-.++..+.
T Consensus 584 ~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~ 625 (1189)
T KOG2041|consen 584 IYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPS 625 (1189)
T ss_pred eehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccc
Confidence 445566789999999998887766666678888776665543
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.8e-10 Score=116.90 Aligned_cols=167 Identities=14% Similarity=0.224 Sum_probs=116.2
Q ss_pred CCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEE
Q 047837 371 PSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMA 450 (882)
Q Consensus 371 ~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (882)
+.+.++.++ +...+|++|+.+|.|..||.+....+........ +.
T Consensus 176 ~~lN~v~in-~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~----------------------------------v~ 220 (703)
T KOG2321|consen 176 GELNVVSIN-EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS----------------------------------VN 220 (703)
T ss_pred ccceeeeec-CccceEEecccCceEEEecchhhhhheeeecccc----------------------------------cC
Confidence 344455555 5667888888899999999887665433221110 00
Q ss_pred EcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc
Q 047837 451 VSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC 530 (882)
Q Consensus 451 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~ 530 (882)
-.| .......|+++.|+.++- .+++|..+|.|.|||++....++..-.+..-+|..+.|.+
T Consensus 221 s~p------g~~~~~svTal~F~d~gL-------------~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 221 SHP------GGDAAPSVTALKFRDDGL-------------HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred CCc------cccccCcceEEEecCCce-------------eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 000 011233488888888776 8999999999999999987555544445567899999977
Q ss_pred C--CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC
Q 047837 531 N--GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA 599 (882)
Q Consensus 531 ~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~ 599 (882)
. +..+++.. ...++|||-.++.....+... ..+..+++-|++-+++++-.+..+..|=+..
T Consensus 282 ~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-------~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 282 TDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-------SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCCceEEecc-hHHhhhcccccCCceeecccc-------CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 4 44555544 467999999887766555333 3689999999999999999988888776654
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=2.4e-09 Score=112.59 Aligned_cols=276 Identities=15% Similarity=0.172 Sum_probs=166.8
Q ss_pred eEEEEEEC--CCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC--CCCeEEEEECCCc--e--eeEEeeccccceeE
Q 047837 22 CVLVVYDV--DSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG--PQPAVLVWDCANL--A--FISELKGHLYGVEC 93 (882)
Q Consensus 22 ~~v~vwd~--~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~--~d~~I~vwd~~t~--~--~~~~l~~h~~~V~~ 93 (882)
+.|.+|++ ++++....-.... ....+.++++|++++|.+.... .++.|..|++... + .+.+..........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 56777777 5555443221111 2578899999999999999765 5789999988753 3 33334333455678
Q ss_pred EEECCCCCEEEEEc---CEEEEEEcCc-ceeeeee--ecC---------CcccceeEEEEccCCCEEEEECC--CcEEEE
Q 047837 94 IAFSPDGEHLVTVG---GYIYLWNWRS-AMLVMKL--KAN---------SSCSAITSACFSSDAKFIVTAGK--KHLKFW 156 (882)
Q Consensus 94 lafspdg~~Las~~---~~i~iWd~~~-g~~~~~~--~~~---------~~~~~v~~l~fs~d~~~l~~~~~--~~i~iw 156 (882)
++++||+++|+++. |.|.++++.. |.+.... ..+ .......++.|+||++++++..- +.|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 99999999999987 9999999986 4443331 110 11245789999999999988754 679999
Q ss_pred EcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceee
Q 047837 157 TIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVT 236 (882)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~ 236 (882)
+++........ ...+. +..
T Consensus 172 ~~~~~~~~l~~----~~~~~----------------------------------------------------~~~----- 190 (345)
T PF10282_consen 172 DIDDDTGKLTP----VDSIK----------------------------------------------------VPP----- 190 (345)
T ss_dssp EE-TTS-TEEE----EEEEE----------------------------------------------------CST-----
T ss_pred EEeCCCceEEE----eeccc----------------------------------------------------ccc-----
Confidence 98765420000 00000 000
Q ss_pred eEeeceeeeeEEEecCCCEEEEEe-cCCeEEeeecc--ccee--cccccccCcccCCCCCccccchhhhccccccCCCCC
Q 047837 237 KSVDLKVKNGFALSASSKLIACAC-SNGAVHLFDIQ--SLKH--AGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIP 311 (882)
Q Consensus 237 ~~~~~~~~~~~~~s~d~~~l~~~~-~dg~I~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (882)
....+.++|+|+++++++.. .++.|.++++. ++.. +..+.... ... ....
T Consensus 191 ----G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~-~~~--------------------~~~~ 245 (345)
T PF10282_consen 191 ----GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP-EGF--------------------TGEN 245 (345)
T ss_dssp ----TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE-TTS--------------------CSSS
T ss_pred ----CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc-ccc--------------------cccC
Confidence 01127899999999887665 56889999988 3322 11111000 000 0112
Q ss_pred CcEEEeecCCCeEEEEeC--CceEEEEEcccc-cccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 312 NAIACQFSTSEKLVVVYG--DHSLYVWDIHDV-NEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 312 ~~~~~~~s~~~~ll~~~~--d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
....++++|||++|.++. .+.|.+|+++.. ........+.. .......++++ +++++|++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~----------------~G~~Pr~~~~s-~~g~~l~V 308 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT----------------GGKFPRHFAFS-PDGRYLYV 308 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE----------------SSSSEEEEEE--TTSSEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC----------------CCCCccEEEEe-CCCCEEEE
Confidence 455789999998554433 789999999432 22221111111 12235667777 78888877
Q ss_pred ee-CCCcEEEEecC
Q 047837 389 CS-ADGTIRLWDLA 401 (882)
Q Consensus 389 ~~-~dg~i~vwd~~ 401 (882)
+. .++.|.+|++.
T Consensus 309 a~~~s~~v~vf~~d 322 (345)
T PF10282_consen 309 ANQDSNTVSVFDID 322 (345)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EecCCCeEEEEEEe
Confidence 76 56789999875
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=6.9e-09 Score=105.58 Aligned_cols=279 Identities=13% Similarity=0.098 Sum_probs=166.5
Q ss_pred eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC--------CCCeEEEEECCCceeeEEeecccc----
Q 047837 22 CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG--------PQPAVLVWDCANLAFISELKGHLY---- 89 (882)
Q Consensus 22 ~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~--------~d~~I~vwd~~t~~~~~~l~~h~~---- 89 (882)
++|.|.|.++++.+..+..-. .+- .+ +||||+.|+++... .+..|.|||.++++.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~--~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF--LPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC--CCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 689999999999887775433 222 24 99999999998751 366899999999999998874222
Q ss_pred ---ceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCc
Q 047837 90 ---GVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSA 162 (882)
Q Consensus 90 ---~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~ 162 (882)
.-..+++||||++|.... ..|.|.|+.+++.+..+..+. ...-.. .++..+.+.|.|+......++...
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~---~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD---CYHIFP-TANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC---CcEEEE-ecCCccEEEeecCceEEEEecCCC
Confidence 234899999999999776 899999999999999988642 222222 333344455555544333332211
Q ss_pred cceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeece
Q 047837 163 TARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLK 242 (882)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~ 242 (882)
... ....++ ++... ..+..
T Consensus 179 ~~~-----------~~~~~v----------------------------------------------f~~~~---~~v~~- 197 (352)
T TIGR02658 179 NPK-----------IKPTEV----------------------------------------------FHPED---EYLIN- 197 (352)
T ss_pred ceE-----------Eeeeee----------------------------------------------ecCCc---ccccc-
Confidence 100 000000 00000 00000
Q ss_pred eeeeEEEec-CCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 243 VKNGFALSA-SSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 243 ~~~~~~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
+. .|.+ +|+++.+... |.|.+.|+...+......+.... ...... .+ .....--++++++
T Consensus 198 --rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~-~~~~~~------------~w--rP~g~q~ia~~~d 258 (352)
T TIGR02658 198 --HP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT-EAEKAD------------GW--RPGGWQQVAYHRA 258 (352)
T ss_pred --CC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc-cccccc------------cc--CCCcceeEEEcCC
Confidence 11 4456 7887777776 99999996543322111100000 000000 00 1111223899999
Q ss_pred Ce-EEEEe----------CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc-EEEEe
Q 047837 322 EK-LVVVY----------GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV-SFSTC 389 (882)
Q Consensus 322 ~~-ll~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~-~l~t~ 389 (882)
++ +++.. ..+.|.++|..+.+...... . ...+..++++ +|++ +|++.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--v------------------G~~~~~iavS-~Dgkp~lyvt 317 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE--L------------------GHEIDSINVS-QDAKPLLYAL 317 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe--C------------------CCceeeEEEC-CCCCeEEEEe
Confidence 76 33322 12589999998776544321 1 2244556666 7887 77655
Q ss_pred e-CCCcEEEEecCCCceeeec
Q 047837 390 S-ADGTIRLWDLALQSELSKD 409 (882)
Q Consensus 390 ~-~dg~i~vwd~~~~~~~~~~ 409 (882)
. .++.|.+.|..+++.+...
T Consensus 318 n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeEEeee
Confidence 5 6788999999999887764
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=1.1e-10 Score=111.22 Aligned_cols=331 Identities=13% Similarity=0.116 Sum_probs=204.9
Q ss_pred eeeeeEEEecCCCEEEEEecCCeEEeeec-ccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC
Q 047837 242 KVKNGFALSASSKLIACACSNGAVHLFDI-QSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST 320 (882)
Q Consensus 242 ~~~~~~~~s~d~~~l~~~~~dg~I~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 320 (882)
..++....-|....+++.+.|.++|+|-- +.++.-..+. ......+.++.|.+
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~--------------------------~~mP~~~~~~~y~~ 78 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY--------------------------HYMPSPCSAMEYVS 78 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh--------------------------hhCCCCceEeeeec
Confidence 34456666777788999999999999953 4444333322 12334566888998
Q ss_pred CCe-EEEEeCCceEEEEEcccc-cccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 321 SEK-LVVVYGDHSLYVWDIHDV-NEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 321 ~~~-ll~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
+.+ |+++-.+|++.-+.+... +... +......|...|..+.|+ .....+++.+.|..+.--
T Consensus 79 e~~~L~vg~~ngtvtefs~sedfnkm~----------------~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~h 141 (404)
T KOG1409|consen 79 ESRRLYVGQDNGTVTEFALSEDFNKMT----------------FLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWH 141 (404)
T ss_pred cceEEEEEEecceEEEEEhhhhhhhcc----------------hhhhhhhhhcceeeEEec-CCceeEEEeccccceEEE
Confidence 876 555556899888876432 1111 122223466666666666 667789999999777655
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCE--EEeeeccceEEEEEEecCC
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGST--LLLDAHDAEILSLSFSLSS 476 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~~~v~~~~~~~~~ 476 (882)
-.+.+..+.......... +... +.....++.....+..+.+-+.+-. ..+.+|.+.+.+++|.+..
T Consensus 142 c~e~~~~lg~Y~~~~~~t-----~~~~-------d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~ 209 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPAS-----ALQF-------DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ 209 (404)
T ss_pred eeccCCcccceEeeccCC-----CCce-------eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC
Confidence 555555443322111110 0000 1112222333445555555555433 4567999999999999998
Q ss_pred CCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce
Q 047837 477 KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY 556 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 556 (882)
. ++.+|..|..+.+||+.-+......+.+|...|..+..-+--+.+++++.||.|.+|+++......
T Consensus 210 ~-------------~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 210 R-------------LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred c-------------EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecC
Confidence 8 999999999999999987766778899999999999999889999999999999999987432110
Q ss_pred ---eeec----cceec--------------------ccCCceEEEEEecCCCEEEEEeCCCcEEEEE--------ccCCc
Q 047837 557 ---KISR----RHQQL--------------------ASQGTVYDMDIDPTMEVVITVGQDKKINSFS--------IAAGK 601 (882)
Q Consensus 557 ---~~~~----~~~~~--------------------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd--------~~~~~ 601 (882)
.... -++.. .+-+...+..-+.+.....+-+..-.+|+-| .. ..
T Consensus 277 pewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~-~t 355 (404)
T KOG1409|consen 277 PEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEE-RT 355 (404)
T ss_pred ccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCC-CC
Confidence 0000 00000 0001111111111111122222223344443 22 12
Q ss_pred eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 602 LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
.+..+. .-...|+.|.+..+-.+|++++.|..|+|||++.
T Consensus 356 ~LA~ph--ei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 356 PLAIPH--EIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccc--ccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 233332 3446799999999888999999999999999864
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.6e-08 Score=98.32 Aligned_cols=141 Identities=13% Similarity=0.192 Sum_probs=98.1
Q ss_pred ceEEEEEECCCCc--eE-EEEEecCCCCCeEEEEEcCCCCEEEEeec-CCCCeEEEEECCC--ceeeE--Eeecccccee
Q 047837 21 GCVLVVYDVDSST--QS-HLMVSHRMPKPLCCVAMSRDGRYVAAGES-GPQPAVLVWDCAN--LAFIS--ELKGHLYGVE 92 (882)
Q Consensus 21 ~~~v~vwd~~~~~--~~-~~l~~h~~~~~I~~va~spdg~~la~g~~-~~d~~I~vwd~~t--~~~~~--~l~~h~~~V~ 92 (882)
+.-|.+|++.+.+ .. ..+..+. +.++-|+++|++++|.++-. +.++.|.-|.++. |++-. .......+-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~--~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAEL--GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhcccc--CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 4569999987432 21 1122444 78999999999999998864 2467777777764 55432 2222233448
Q ss_pred EEEECCCCCEEEEEc---CEEEEEEcCc-ceeeeeeecCCcccc----------eeEEEEccCCCEEEEECC--CcEEEE
Q 047837 93 CIAFSPDGEHLVTVG---GYIYLWNWRS-AMLVMKLKANSSCSA----------ITSACFSSDAKFIVTAGK--KHLKFW 156 (882)
Q Consensus 93 ~lafspdg~~Las~~---~~i~iWd~~~-g~~~~~~~~~~~~~~----------v~~l~fs~d~~~l~~~~~--~~i~iw 156 (882)
.++++++|++|+++. |.|.++-+.+ |.+......-.|.+. +....|.|++++|++..- +.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 999999999999998 9999999865 544332221112133 788999999999999875 579999
Q ss_pred EcccCcc
Q 047837 157 TIGSSAT 163 (882)
Q Consensus 157 d~~~~~~ 163 (882)
+++.+.+
T Consensus 173 ~~~dg~L 179 (346)
T COG2706 173 DLDDGKL 179 (346)
T ss_pred EcccCcc
Confidence 9986655
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.5e-10 Score=117.17 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=150.4
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeEEEeec---CCCCEEEEEE------cc--------------CCCEEEEEeCCCeEEE
Q 047837 490 YFLASGGRDRTIHLYDVKRNFDLIESIDD---HSAAVTAVKF------TC--------------NGRKILSCSADRSLVV 546 (882)
Q Consensus 490 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---h~~~v~~~~~------s~--------------~~~~l~s~~~dg~i~v 546 (882)
.++|....||.+++|+...+ +....+.. -.+.-++..| +| |...++-|...|.|.+
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKN-QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred heEeecCCCCeEEEEEccCc-eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 48999999999999999876 44333332 1222333333 11 3346788888999999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCE
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
|++..++...++.. -.|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.+. .....+.+++++|||..
T Consensus 85 ys~~~g~it~~~st----~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~--~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 85 YSVAGGEITAKLST----DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK--EQKPLVSSLCISPDGKI 158 (541)
T ss_pred EEecCCeEEEEEec----CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec--cCCCccceEEEcCCCCE
Confidence 99997776665542 3456899999999999999999999999999999999999998 77788999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCC-----CCEEEEE-eCCCeEEEEeCCC
Q 047837 627 LVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD-----CKHIVSV-GGDGLQRVKEKYG 685 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d-----~~~l~s~-~~dg~i~vwd~~~ 685 (882)
|++++ ++|++||+++++.+..|.||.++|+++.|.-+ |+++++. ..+..+.+|-+..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99986 58999999999999999999999999999877 6666654 4666788888765
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-10 Score=110.75 Aligned_cols=282 Identities=19% Similarity=0.243 Sum_probs=170.4
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-----eeEEeeccc------------cceeEEEECCCCC---EEE
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA-----FISELKGHL------------YGVECIAFSPDGE---HLV 104 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~-----~~~~l~~h~------------~~V~~lafspdg~---~La 104 (882)
.-|++|.|...|.+||+| +.+|.|.++.-.... ....+..|. ..|..+.|.+++. +|+
T Consensus 26 diis~vef~~~Ge~LatG--dkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATG--DKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred cceeeEEeecccceEeec--CCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 679999999999999999 558899999765322 233344453 4588899998764 566
Q ss_pred EEc-CEEEEEEcCcceee----------------------------------eeeecCCcccceeEEEEccCCCEEEEEC
Q 047837 105 TVG-GYIYLWNWRSAMLV----------------------------------MKLKANSSCSAITSACFSSDAKFIVTAG 149 (882)
Q Consensus 105 s~~-~~i~iWd~~~g~~~----------------------------------~~~~~~~~~~~v~~l~fs~d~~~l~~~~ 149 (882)
+.. .+|++|-+...... .+.-.+.|.--|.++.++.|...++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 766 99999987532110 0111223456789999999999999999
Q ss_pred CCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEE
Q 047837 150 KKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIV 229 (882)
Q Consensus 150 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~ 229 (882)
+=.|.+|+++-... .+.|+.+.....
T Consensus 184 dLRINLWnlei~d~--------------------------------------------------sFnIVDIKP~nm---- 209 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQ--------------------------------------------------SFNIVDIKPANM---- 209 (433)
T ss_pred ceeeeeccccccCC--------------------------------------------------ceeEEEccccCH----
Confidence 98899999863322 011111110000
Q ss_pred ccCceeeeEeeceeeeeEEEecC-CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCC
Q 047837 230 HSGLSVTKSVDLKVKNGFALSAS-SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTP 308 (882)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (882)
.--..++++..|+|. ...++..+..|+|++-|+.....-... .+.+.....+.. ...+..
T Consensus 210 --------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h----sKlfEepedp~~-------rsffse 270 (433)
T KOG1354|consen 210 --------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH----SKLFEEPEDPSS-------RSFFSE 270 (433)
T ss_pred --------HHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch----hhhhccccCCcc-------hhhHHH
Confidence 000234577889996 567788889999999999843221110 011111111110 111122
Q ss_pred CCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 309 TIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 309 ~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
....+..+.|+++|+++.+-.=-+|++||+...... +....-|...-..+.-+. ...---.-.-++|+ .++..++|
T Consensus 271 iIsSISDvKFs~sGryilsRDyltvk~wD~nme~~p--v~t~~vh~~lr~kLc~lY-EnD~IfdKFec~~s-g~~~~v~T 346 (433)
T KOG1354|consen 271 IISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKP--VETYPVHEYLRSKLCSLY-ENDAIFDKFECSWS-GNDSYVMT 346 (433)
T ss_pred HhhhhhceEEccCCcEEEEeccceeEEEeccccCCc--ceEEeehHhHHHHHHHHh-hccchhheeEEEEc-CCcceEec
Confidence 334566789999999998877799999999544322 222333321100000000 00000111246676 67789999
Q ss_pred eeCCCcEEEEecCCCce
Q 047837 389 CSADGTIRLWDLALQSE 405 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~ 405 (882)
|+.....+++++..+..
T Consensus 347 Gsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 347 GSYNNVFRVFNLARGSK 363 (433)
T ss_pred ccccceEEEecCCCCcc
Confidence 99999999999766543
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=1.9e-08 Score=102.39 Aligned_cols=274 Identities=12% Similarity=0.044 Sum_probs=159.7
Q ss_pred ceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC----------CCcEEEEec
Q 047837 331 HSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA----------DGTIRLWDL 400 (882)
Q Consensus 331 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~----------dg~i~vwd~ 400 (882)
++|.+.|.++.+....... |. .+. .+ ++ +|++.|+++.. +..|.+||.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~--G~----------------~P~--~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG--GF----------------LPN--PV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred ceEEEEECCCCEEEEEEEc--cC----------------CCc--ee-EC-CCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 7899999887654332211 11 111 12 44 77777766654 789999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
.+.+.+.+...+..+... .......+++++||+
T Consensus 85 ~t~~~~~~i~~p~~p~~~-----------------------~~~~~~~~~ls~dgk------------------------ 117 (352)
T TIGR02658 85 QTHLPIADIELPEGPRFL-----------------------VGTYPWMTSLTPDNK------------------------ 117 (352)
T ss_pred ccCcEEeEEccCCCchhh-----------------------ccCccceEEECCCCC------------------------
Confidence 999887665443221000 001123445555554
Q ss_pred cceeccCCceEEEEEc-C-CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceee
Q 047837 481 VLEEVTDSHYFLASGG-R-DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKI 558 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~-~-dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 558 (882)
+|+... . +..|-+.|+.++ +.+..+.-. ....-...+++. .+ .-+.||......+.........
T Consensus 118 ----------~l~V~n~~p~~~V~VvD~~~~-kvv~ei~vp-~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 118 ----------TLLFYQFSPSPAVGVVDLEGK-AFVRMMDVP-DCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ----------EEEEecCCCCCEEEEEECCCC-cEEEEEeCC-CCcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEe
Confidence 555544 3 688999999887 555555431 111222222221 11 2233444444333332221111
Q ss_pred ec----cceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEccC-----CceEEEEEec-----cCCCCcEEEEECCC
Q 047837 559 SR----RHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSIAA-----GKLIRSFKQA-----KDFGDPMKVTVDPS 623 (882)
Q Consensus 559 ~~----~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~-----~~~~~v~~~~~spd 623 (882)
.. .........+ .|.+ +|+++.+..+ |+|.+.|+.. .+....+... -..+.+.-++++|+
T Consensus 184 ~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred eeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 00 0000000112 4566 8888777666 9999999643 3333332210 12334455999999
Q ss_pred CCEEEEEe----------CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCCCCCCcc
Q 047837 624 GSYLVCSY----------SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCK-HIVSVG-GDGLQRVKEKYGILPPRN 691 (882)
Q Consensus 624 g~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~-~dg~i~vwd~~~~~~~~~ 691 (882)
++.+.+.. ..+.|.++|..+++.+..+.. ...+..|+|+||++ +|++.. .++.|.+.|..+.+..+.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 99888743 124799999999999998873 45889999999999 888666 678899999999888777
Q ss_pred cC
Q 047837 692 FA 693 (882)
Q Consensus 692 ~~ 693 (882)
+.
T Consensus 338 i~ 339 (352)
T TIGR02658 338 VN 339 (352)
T ss_pred ec
Confidence 63
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.9e-09 Score=116.22 Aligned_cols=209 Identities=13% Similarity=0.125 Sum_probs=128.4
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCC--CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEe
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD--RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCS 539 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 539 (882)
.....+..-+|+|+++.. .++++...+ ..|.+.++..+ +. ..+..........+|||||+.|+..+
T Consensus 182 ~~~~~~~sP~wSPDG~~~----------~~~y~S~~~g~~~I~~~~l~~g-~~-~~lt~~~g~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGF----------PYLYVSYKLGVPKIFLGSLENP-AG-KKILALQGNQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred cCCCCcccceEccCCCce----------EEEEEEccCCCceEEEEECCCC-Cc-eEeecCCCCccceEECCCCCEEEEEE
Confidence 344456677888887610 022244444 35777788765 22 22233344456789999999988655
Q ss_pred C-----CCeEEEEeCccC--ccceeeeccceecccCCceEEEEEecCCCEEEEEe-CCCcEEEE--EccC-CceEEEEEe
Q 047837 540 A-----DRSLVVRDVVET--NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QDKKINSF--SIAA-GKLIRSFKQ 608 (882)
Q Consensus 540 ~-----dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iw--d~~~-~~~~~~~~~ 608 (882)
. +..+..|++..+ .....+.... .......+|+|||+.|+..+ .++...+| ++.. +.....+.
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt- 323 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNEA-----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT- 323 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecCC-----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-
Confidence 3 223444676542 1222222111 12345789999999887765 46655555 4432 23344443
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEe
Q 047837 609 AKDFGDPMKVTVDPSGSYLVCSYSN---KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG---DGLQRVKE 682 (882)
Q Consensus 609 ~~~~~~v~~~~~spdg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~---dg~i~vwd 682 (882)
.+...+....|||||++|+....+ ..|++||+.+++... +......+....|+|||++|+.... ...|.+||
T Consensus 324 -~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 324 -KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred -cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 344567789999999999876543 379999999887643 3333446778999999998875442 35788889
Q ss_pred CCCCCCCc
Q 047837 683 KYGILPPR 690 (882)
Q Consensus 683 ~~~~~~~~ 690 (882)
+.+.....
T Consensus 402 l~~g~~~~ 409 (428)
T PRK01029 402 LITKKTRK 409 (428)
T ss_pred CCCCCEEE
Confidence 87765443
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=1.1e-08 Score=110.17 Aligned_cols=303 Identities=14% Similarity=0.083 Sum_probs=179.9
Q ss_pred CCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCc
Q 047837 252 SSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDH 331 (882)
Q Consensus 252 d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~ 331 (882)
.+..+++++.+|.|..+|..+|+.+-+...... +. . ..+ ..++++++++.++
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~---------~~---------------~---~p~-v~~~~v~v~~~~g 115 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDER---------LS---------------G---GVG-ADGGLVFVGTEKG 115 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCC---------cc---------------c---ceE-EcCCEEEEEcCCC
Confidence 366888999999999999999887755432110 00 0 111 1256788888899
Q ss_pred eEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeeccc
Q 047837 332 SLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVL 411 (882)
Q Consensus 332 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 411 (882)
.++.+|.++++....... .+.+.. .... .+..++.++.+|.+..||..+++.+.+...
T Consensus 116 ~l~ald~~tG~~~W~~~~----~~~~~~---------------~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKL----SSEVLS---------------PPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred EEEEEECCCCcEeeeecc----Cceeec---------------CCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 999999987764332110 011100 0011 234566677899999999999887654322
Q ss_pred CCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceE
Q 047837 412 GHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYF 491 (882)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 491 (882)
...... ......++ .. + ..
T Consensus 174 ~~~~~~------------------------------------------~~~~~sp~----~~-~--------------~~ 192 (377)
T TIGR03300 174 VTPALT------------------------------------------LRGSASPV----IA-D--------------GG 192 (377)
T ss_pred CCCcee------------------------------------------ecCCCCCE----EE-C--------------CE
Confidence 110000 00000000 00 0 14
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEee-cCC---C---CEEEEEEcc--CCCEEEEEeCCCeEEEEeCccCccceeeeccc
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESID-DHS---A---AVTAVKFTC--NGRKILSCSADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~-~h~---~---~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
++.+..++.+..+|..++. .+-... ... . ....+.-+| .+..++.++.+|.+..||..+++.......
T Consensus 193 v~~~~~~g~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-- 269 (377)
T TIGR03300 193 VLVGFAGGKLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-- 269 (377)
T ss_pred EEEECCCCEEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--
Confidence 6667777888888877763 221111 000 0 000111111 355788888899999999987765544321
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
.....+. .++..++.++.||.+..+|..+|+.+...... .......... .+.+|++++.+|.|+++|..
T Consensus 270 ------~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 270 ------SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ------CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-cCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 0111222 24667888889999999999999887665311 1112222222 36788899999999999999
Q ss_pred CCeEEEEEccCCCCeE-EEEECCCCCEEEEEeCCCeEEEE
Q 047837 643 SGEMVAKAMGHGEVIT-GVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 643 ~~~~~~~~~~h~~~v~-~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
+|+.+.++..+...+. ...+. ++ .|+.++.||.|..+
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 9999988876654433 23332 33 58889999988765
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.4e-08 Score=98.68 Aligned_cols=158 Identities=18% Similarity=0.261 Sum_probs=110.7
Q ss_pred CCCccccCCCCCeEEEeec---eEEEEEECC--CCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC
Q 047837 3 PNHNIKKPDSSSKCAYVAG---CVLVVYDVD--SSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN 77 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~---~~v~vwd~~--~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t 77 (882)
|.-++++|++..+++.... +.|..|.++ +|+....-..-....+-+.++++++|++|+++... .+.|.|+-+++
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-~g~v~v~p~~~ 120 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-SGSVSVYPLQA 120 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-CceEEEEEccc
Confidence 5668899997633333322 346666555 36654331111111345899999999999999764 68999999965
Q ss_pred -ceeeEE--eeccccc----------eeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecC-CcccceeEEEEcc
Q 047837 78 -LAFISE--LKGHLYG----------VECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKAN-SSCSAITSACFSS 140 (882)
Q Consensus 78 -~~~~~~--l~~h~~~----------V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~-~~~~~v~~l~fs~ 140 (882)
|.+... +..|.+. +.+..|+||+++|++.+ -.|.+|++..|.+...-... ........|+|+|
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp 200 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP 200 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC
Confidence 543322 2235555 89999999999999999 78999999988765332211 1226789999999
Q ss_pred CCCEEEEECC--CcEEEEEcccC
Q 047837 141 DAKFIVTAGK--KHLKFWTIGSS 161 (882)
Q Consensus 141 d~~~l~~~~~--~~i~iwd~~~~ 161 (882)
++++.....+ ++|.+|..+..
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCC
Confidence 9999998886 78999998864
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.24 E-value=5.4e-10 Score=106.51 Aligned_cols=317 Identities=13% Similarity=0.146 Sum_probs=219.5
Q ss_pred eeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEE-EeecCCCCEEEEEEccCCCEEEEE
Q 047837 460 LDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIE-SIDDHSAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 460 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~ 538 (882)
+.+|.+.++....-|..+ -+++.+.|.+++||--+...+.-. .......+++++.+.++.+.|+.+
T Consensus 20 ~eG~~d~vn~~~l~~~e~-------------gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEE-------------GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred hcCchhhhhhheeccCCC-------------CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEE
Confidence 567777777777777666 699999999999997554323222 222346789999999999999999
Q ss_pred eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEE
Q 047837 539 SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKV 618 (882)
Q Consensus 539 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 618 (882)
-..|++.-+.+... ..++......+.|...+..+-|+-..+++++.+.|..+..--.+.+..+..+.. ....+++
T Consensus 87 ~~ngtvtefs~sed--fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~---~~~~t~~ 161 (404)
T KOG1409|consen 87 QDNGTVTEFALSED--FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF---ETPASAL 161 (404)
T ss_pred EecceEEEEEhhhh--hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe---eccCCCC
Confidence 99999999887632 333333444567778999999999999999999999888777777665544431 1122222
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcc--CCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcc--cCC
Q 047837 619 TVDPSGSYLVCSYSNKSICLYDFI--SGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRN--FAQ 694 (882)
Q Consensus 619 ~~spdg~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~ 694 (882)
.+.-. +...|...|.|.+-.+. .-.++.++.+|.+.+++++|.+..+.|+++..|..+.+||+........ +.+
T Consensus 162 ~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 162 QFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred ceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 22222 66677777777665553 4577889999999999999999999999999999999999976543322 122
Q ss_pred --------CCCcccEEEecCCCeEEEecccccccccCcCcCCCccccceecCCceeeEEEecCCchhhhhcccccccccc
Q 047837 695 --------PAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQIGPHLHYHGVKPHLTSAFKFSISRLPKWAQKKVTDSEIVP 766 (882)
Q Consensus 695 --------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 766 (882)
.....+..||.++++.+..|+.+....+..+.....-...-+++ . -|--...++.
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qp---f----------fwn~~~m~~~---- 302 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQP---F----------FWNFRQMWDR---- 302 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCch---H----------HHHHHHHHhh----
Confidence 23345788999999999999888875544443322222111111 1 1333444442
Q ss_pred CCcccccccccccccCCCcccCCCCCCCCceeecCCCCCCcCCCCceeeee
Q 047837 767 GNLDFSLSQEVEKKSLSPFVGDVGGYSPESQEVQIPSNHDLEDSNSCTSCF 817 (882)
Q Consensus 767 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (882)
..+...+++..|+....++.|++.++.+|..-+.-+ -|--.+|..++
T Consensus 303 --k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~--vR~~~~c~~~i 349 (404)
T KOG1409|consen 303 --KQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFS--VRVCDSCYPTI 349 (404)
T ss_pred --hhhhhhhhhhhhhhhhcCcccccCccccccccceeE--EEEecccchhh
Confidence 245567889999999999999999998887766332 34444444433
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=3.3e-09 Score=116.23 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=129.3
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCC---CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEE-E
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD---RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILS-C 538 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~ 538 (882)
+...+...+|+|+++ +|+....+ ..|++||+.++. . ..+..+...+..++|+|||+.|+. .
T Consensus 188 ~~~~~~~p~~Spdg~-------------~la~~~~~~~~~~i~v~d~~~g~-~-~~~~~~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 188 SREPILSPAWSPDGQ-------------KLAYVSFESGKPEIYVQDLATGQ-R-EKVASFPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred CCCceecccCCCCCC-------------EEEEEEcCCCCcEEEEEECCCCC-E-EEeecCCCCccceEECCCCCEEEEEE
Confidence 344566667777776 56655432 479999998762 2 223345556777999999998774 4
Q ss_pred eCCC--eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC-C--cEEEEEccCCceEEEEEeccCCC
Q 047837 539 SADR--SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD-K--KINSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 539 ~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
+.++ .|++||+.++.. ..+.. +........|+|||+.|+..+.. + .|.++|+.+++.. .+. .+..
T Consensus 253 ~~~~~~~i~~~d~~~~~~-~~l~~------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~--~~~~ 322 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQL-TRLTN------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT--FRGG 322 (417)
T ss_pred CCCCCccEEEEECCCCCE-EECCC------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee--cCCC
Confidence 4444 588888875432 22211 11234567899999988776643 3 5888888876643 333 3445
Q ss_pred CcEEEEECCCCCEEEEEeCCC---cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCC
Q 047837 614 DPMKVTVDPSGSYLVCSYSNK---SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG---LQRVKEKYG 685 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg---~i~vwd~~~ 685 (882)
....+.|+|||++|+.+..++ .|.+||+.++... .+... .......|+|||++|+..+.++ .+.+.+..+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 677889999999999887765 7999999886543 33322 2345678999999998877654 355555443
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=3.4e-09 Score=116.12 Aligned_cols=202 Identities=15% Similarity=0.168 Sum_probs=135.5
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC---CeEEEEeCccCccceeeeccceecccCCceEEEE
Q 047837 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD---RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMD 575 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 575 (882)
..|.++|.... ..+.+..+...+...+|+|||++|+.+..+ ..|++||+.++... .+.. ..+.+.+++
T Consensus 170 ~~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~------~~~~~~~~~ 240 (417)
T TIGR02800 170 YELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVAS------FPGMNGAPA 240 (417)
T ss_pred ceEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-Eeec------CCCCccceE
Confidence 45777776532 334455567778999999999999977643 47999999865332 1111 124566789
Q ss_pred EecCCCEEEEE-eCCC--cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC-C--cEEEEEccCCeEEEE
Q 047837 576 IDPTMEVVITV-GQDK--KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN-K--SICLYDFISGEMVAK 649 (882)
Q Consensus 576 ~sp~~~~l~~~-~~d~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d-g--~i~iwd~~~~~~~~~ 649 (882)
|+|||+.|+.. +.++ .|++||+.+++... +. .+........|+|||++|+..+.. + .|+++|+.+++.. .
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 99999977644 4444 68999998776543 32 333445677999999988766543 3 6888888877643 4
Q ss_pred EccCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEec
Q 047837 650 AMGHGEVITGVTFLPDCKHIVSVGGDG---LQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRMD 714 (882)
Q Consensus 650 ~~~h~~~v~~l~~s~d~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 714 (882)
+..+...+..+.|+|||++|+.++.++ .|.+||+.+... ..+..........|++++..++...
T Consensus 317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEE
Confidence 444556677889999999999988776 789999876432 2222222234456777776554433
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=6.7e-09 Score=113.78 Aligned_cols=212 Identities=14% Similarity=0.114 Sum_probs=135.2
Q ss_pred EEEEcCCCC-EEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCC---CcEEEEEcCCCceeEEEeecCCCCE
Q 047837 448 SMAVSSRGS-TLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD---RTIHLYDVKRNFDLIESIDDHSAAV 523 (882)
Q Consensus 448 ~~~~s~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~h~~~v 523 (882)
.+....+|. ...+..+...+....|+|+++ .|+..+.+ ..|.+||+.++ .. ..+......+
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~-------------~la~~s~~~~~~~l~~~~l~~g-~~-~~l~~~~g~~ 245 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGK-------------RIAYVSFEQKRPRIFVQNLDTG-RR-EQITNFEGLN 245 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCC-------------EEEEEEcCCCCCEEEEEECCCC-CE-EEccCCCCCc
Confidence 333444443 233445667788999999988 66554432 46889999875 22 2233333445
Q ss_pred EEEEEccCCCEEEE-EeCCC--eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CC--cEEEEEc
Q 047837 524 TAVKFTCNGRKILS-CSADR--SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DK--KINSFSI 597 (882)
Q Consensus 524 ~~~~~s~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~ 597 (882)
....|+|||+.|+. ...++ .|++||+.++.. ..+.. +........|+|||+.|+..+. ++ .|.++|+
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTN------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEccc------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 57899999998874 44444 588889886542 22221 1234566889999998876654 33 5777888
Q ss_pred cCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC-C--cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 598 AAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN-K--SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 598 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
.+++..+... .........|+|||++|+....+ + .|.+||+.+++.. .+. +........|+|||++|+..+.
T Consensus 319 ~~g~~~~lt~---~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 319 NGGRAERVTF---VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCEEEeec---CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEe
Confidence 8777543322 12334467899999999876643 3 5889999888653 332 2223335689999999887764
Q ss_pred C---CeEEEEeCCCC
Q 047837 675 D---GLQRVKEKYGI 686 (882)
Q Consensus 675 d---g~i~vwd~~~~ 686 (882)
+ ..+.++++.+.
T Consensus 394 ~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 394 QQGRGVLMLVSINGR 408 (430)
T ss_pred cCCceEEEEEECCCC
Confidence 3 34667777543
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=5.1e-09 Score=97.93 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=137.9
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC-CceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR-NFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSL 544 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i 544 (882)
..++.|++.+. -++++..+|.+.+-+... ..+.++..+.|.-.+....|+. +.+.+.+|+.|+.+
T Consensus 124 ~lslD~~~~~~-------------~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 124 ALSLDISTSGT-------------KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred eeEEEeeccCc-------------eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceE
Confidence 45667777776 688888899998555433 2234457889999999999987 45678899999999
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcc-CCceEEEEEeccCCCCcEEEEECC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSIA-AGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
..||++....... +....|...|.++.-+| ...++++|+.|..|++||.+ -++++..-. -.+.|..+..+|
T Consensus 191 ~~~D~R~p~~~i~----~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p 263 (339)
T KOG0280|consen 191 SCWDIRIPKTFIW----HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---VGGGVWRIKHHP 263 (339)
T ss_pred EEEEecCCcceee----ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc---cccceEEEEecc
Confidence 9999983332111 11223446788888776 56799999999999999998 466666553 458999999999
Q ss_pred C--CCEEEEEeCCCcEEEEEccCC--e---EEEEEccCCCCeEEEEECCCCCEEEEEe-CCCeEE-EEeCCC
Q 047837 623 S--GSYLVCSYSNKSICLYDFISG--E---MVAKAMGHGEVITGVTFLPDCKHIVSVG-GDGLQR-VKEKYG 685 (882)
Q Consensus 623 d--g~~l~~~~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~-vwd~~~ 685 (882)
. +++|+++-.+| .+|-+...+ + .+...+.|.+-...-.|.....+|+|++ .|..++ +|-.-+
T Consensus 264 ~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 264 EIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred hhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 4 44555555554 666666543 3 3444556766666666644456788876 566655 776544
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=7.2e-09 Score=112.74 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=125.6
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEc-CC--CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEE
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG-RD--RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKI 535 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~d--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 535 (882)
.+..+...+....|+|+++ .|+..+ .+ ..|++||+.++. . ..+..........+|+|||+.|
T Consensus 212 ~l~~~~~~~~~p~wSPDG~-------------~La~~s~~~g~~~L~~~dl~tg~-~-~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGR-------------KLAYVSFENRKAEIFVQDIYTQV-R-EKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EeecCCCcccCceECCCCC-------------EEEEEEecCCCcEEEEEECCCCC-e-EEecCCCCCcCCeeECCCCCEE
Confidence 3445566788889999987 565543 23 358888987752 2 1222222334578999999988
Q ss_pred EE-EeCCCe--EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CC--cEEEEEccCCceEEEEEec
Q 047837 536 LS-CSADRS--LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DK--KINSFSIAAGKLIRSFKQA 609 (882)
Q Consensus 536 ~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~ 609 (882)
+. .+.++. |+++|+.++.. .++.. +.......+|+|||+.|+..+. ++ .|.++|+.+++... +.
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-- 346 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITR------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT-- 346 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECcc------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee--
Confidence 75 455664 77778775432 22211 1234567899999998876654 33 57777887776543 32
Q ss_pred cCCCCcEEEEECCCCCEEEEEeC-CC--cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEeC
Q 047837 610 KDFGDPMKVTVDPSGSYLVCSYS-NK--SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD-G--LQRVKEK 683 (882)
Q Consensus 610 ~~~~~v~~~~~spdg~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d-g--~i~vwd~ 683 (882)
.........+|+|||++|+..+. ++ .|.++|+.+++.. .+... .......|+|||++|+..+.+ + .+.+++.
T Consensus 347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 12223445799999999887654 33 4666788887653 33322 122345899999988776643 3 3667776
Q ss_pred CCC
Q 047837 684 YGI 686 (882)
Q Consensus 684 ~~~ 686 (882)
.+.
T Consensus 425 ~G~ 427 (448)
T PRK04792 425 DGR 427 (448)
T ss_pred CCC
Confidence 543
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.1e-08 Score=111.23 Aligned_cols=158 Identities=14% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEEcCCCc--EEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC-CC--eEEEEeCccCccceeeeccceeccc
Q 047837 493 ASGGRDRT--IHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA-DR--SLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 493 ~~g~~dg~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
++...++. |+++|+.++ ....+..+.......+|+|||+.|+..+. ++ .|.++|+.+++. ..+...
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~------ 348 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFE------ 348 (448)
T ss_pred EEEeCCCCeEEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecC------
Confidence 34455554 777787765 23444555556678899999998876553 33 466667664432 222111
Q ss_pred CCceEEEEEecCCCEEEEEeCC-C--cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC-C--cEEEEEc
Q 047837 568 QGTVYDMDIDPTMEVVITVGQD-K--KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN-K--SICLYDF 641 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d-g--~i~iwd~ 641 (882)
.......+|+|||++|+..+.+ + .|.++|+.+++.. .+. .. .......|+|||++|+....+ + .+++++.
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt--~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLT--ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-Ecc--CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1123456899999998876653 3 4666788877653 332 11 122345899999988765543 3 3777786
Q ss_pred cCCeEEEEEccCCCCeEEEEECC
Q 047837 642 ISGEMVAKAMGHGEVITGVTFLP 664 (882)
Q Consensus 642 ~~~~~~~~~~~h~~~v~~l~~s~ 664 (882)
+|.....+..+.+.+...+|+|
T Consensus 425 -~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 -DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCceEECcCCCCCcCCCccCC
Confidence 5666677766667788888887
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=1.6e-10 Score=132.13 Aligned_cols=204 Identities=12% Similarity=0.217 Sum_probs=159.3
Q ss_pred CCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCE
Q 047837 455 GSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRK 534 (882)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 534 (882)
+.-+.+..+-..|.++.-+|... +.++|+.||.|++|....+...+.........|+.+.|+.+|+.
T Consensus 2199 ~~~~~~k~~v~~v~r~~sHp~~~-------------~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2199 GASVMIKHPVENVRRMTSHPSDP-------------YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred cceeEeecccCceeeecCCCCCc-------------eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc
Confidence 33345556667788888888887 89999999999999998875555444455589999999999999
Q ss_pred EEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe---CCCcEEEEEccCC---ceEEEEEe
Q 047837 535 ILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG---QDKKINSFSIAAG---KLIRSFKQ 608 (882)
Q Consensus 535 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~---~~~~~~~~ 608 (882)
+..+..||.+.+|.+. .....- ...|.....++.|-. ..+++++ .++.+.+||.--. .++.
T Consensus 2266 ~~i~d~dg~l~l~q~~--pk~~~s-----~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---- 2332 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS--PKPYTS-----WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---- 2332 (2439)
T ss_pred eeeeccCCceeecccC--Ccceec-----cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----
Confidence 9999999999999987 112111 123445677777765 5666665 4679999997532 2333
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 609 AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 609 ~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
..|.+.++++++.|.-++|++|+.+|.|++||++..++++.++. +. ...++++++..|.|+||++.....
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 37999999999999999999999999999999998888777764 44 667999999999999999998877
Q ss_pred CcccCC
Q 047837 689 PRNFAQ 694 (882)
Q Consensus 689 ~~~~~~ 694 (882)
+..+..
T Consensus 2403 l~~~p~ 2408 (2439)
T KOG1064|consen 2403 LHTFPS 2408 (2439)
T ss_pred hhcCch
Confidence 766543
No 272
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.15 E-value=3.8e-08 Score=96.12 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=110.5
Q ss_pred CccccCCCCCeEEEee--ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC---CCeEEEEECC-Cc
Q 047837 5 HNIKKPDSSSKCAYVA--GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP---QPAVLVWDCA-NL 78 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~--~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~---d~~I~vwd~~-t~ 78 (882)
+++.+|.....+++.- |....++|..+++..+.+.....-.---.-+||+||++|++.+.+. .|.|-|||.. +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 4788997664555554 7799999999999887664432111123468999999999986532 6899999999 77
Q ss_pred eeeEEeeccccceeEEEECCCCCEEEEEc--------------------CEEEEEEcCcceeeeeeec--CCcccceeEE
Q 047837 79 AFISELKGHLYGVECIAFSPDGEHLVTVG--------------------GYIYLWNWRSAMLVMKLKA--NSSCSAITSA 136 (882)
Q Consensus 79 ~~~~~l~~h~~~V~~lafspdg~~Las~~--------------------~~i~iWd~~~g~~~~~~~~--~~~~~~v~~l 136 (882)
+.+..+..|.-.-..|.+.|||+.|+.+. ..+..-|..+|+++.+... ..+...|..|
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 88888988887788899999998888875 1467778899999988554 3345789999
Q ss_pred EEccCCCEEEEE
Q 047837 137 CFSSDAKFIVTA 148 (882)
Q Consensus 137 ~fs~d~~~l~~~ 148 (882)
++.++|..++..
T Consensus 169 a~~~~G~V~~a~ 180 (305)
T PF07433_consen 169 AVDGDGTVAFAM 180 (305)
T ss_pred EecCCCcEEEEE
Confidence 999998877765
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.3e-08 Score=104.91 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=117.7
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeEEEee--cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceeccc
Q 047837 490 YFLASGGRDRTIHLYDVKRNFDLIESID--DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 490 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
..++.|...|.|.+|++..+ +....+. .|.+.|.++.++.+-..|.+++.|+.+..|+..............
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~----- 144 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK----- 144 (541)
T ss_pred eEEEeecCCccEEEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-----
Confidence 37899999999999999887 5555554 699999999999998999999999999999998665444443322
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCC-----CCEEEEE-eCCCcEEEEEc
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPS-----GSYLVCS-YSNKSICLYDF 641 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----g~~l~~~-~~dg~i~iwd~ 641 (882)
..+.+++++|||..+++++ +.|++||+++++.+..|. +|.++|.++.|--+ |.++.++ ..+.-+.+|-+
T Consensus 145 -~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 145 -PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred -CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 4788999999999999876 589999999999999998 99999999999876 6676654 44556778876
Q ss_pred cC
Q 047837 642 IS 643 (882)
Q Consensus 642 ~~ 643 (882)
..
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 54
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.12 E-value=8.2e-08 Score=103.30 Aligned_cols=308 Identities=13% Similarity=0.102 Sum_probs=171.8
Q ss_pred CCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccce
Q 047837 56 GRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAI 133 (882)
Q Consensus 56 g~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v 133 (882)
+..+.+++. ++.|.-+|..+|+.+....-........+. ++..++.++ +.+..+|..+|+.+.+.... ..+
T Consensus 65 ~~~v~v~~~--~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~ 137 (377)
T TIGR03300 65 GGKVYAADA--DGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---SEV 137 (377)
T ss_pred CCEEEEECC--CCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---cee
Confidence 456777743 789999999999998776543322222332 455565555 99999999999999877654 233
Q ss_pred eEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCc
Q 047837 134 TSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGE 213 (882)
Q Consensus 134 ~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (882)
.+.-...++.+++...++.+..||..+++..-...
T Consensus 138 ~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~--------------------------------------------- 172 (377)
T TIGR03300 138 LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS--------------------------------------------- 172 (377)
T ss_pred ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc---------------------------------------------
Confidence 22111124555555566889999998876511100
Q ss_pred eeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCcc
Q 047837 214 SFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDT 293 (882)
Q Consensus 214 ~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 293 (882)
..+........ ....+. +..++.+..+|.+..+|..+|+.+-+.....+. +.. .
T Consensus 173 --------~~~~~~~~~~~------------~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~---g~~-~ 226 (377)
T TIGR03300 173 --------RVTPALTLRGS------------ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK---GRT-E 226 (377)
T ss_pred --------cCCCceeecCC------------CCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCC---CCC-c
Confidence 00000000000 001111 236777778889999998888765432211000 000 0
Q ss_pred ccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCc
Q 047837 294 VSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSV 373 (882)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v 373 (882)
+. . . ..+.+.-...++.+++++.++.++.||.++++.... ... ...
T Consensus 227 ~~-----~----~----~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~-------------~~~--------~~~ 272 (377)
T TIGR03300 227 LE-----R----L----VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK-------------RDA--------SSY 272 (377)
T ss_pred hh-----h----h----hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe-------------ecc--------CCc
Confidence 00 0 0 000000011256788888899999999987653221 110 000
Q ss_pred ceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecc-cCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 374 SCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDV-LGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 374 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
.... ..+..++.++.||.+..+|..+++.+.+.. ...
T Consensus 273 ~~p~---~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--------------------------------------- 310 (377)
T TIGR03300 273 QGPA---VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--------------------------------------- 310 (377)
T ss_pred cCce---EeCCEEEEECCCCeEEEEECCCCcEEEccccccC---------------------------------------
Confidence 1111 135567777889999999998887654321 000
Q ss_pred CCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEE-EEEEccC
Q 047837 453 SRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVT-AVKFTCN 531 (882)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~-~~~~s~~ 531 (882)
........ .+ ..+++++.+|.++++|..++ +.+..+..+...+. ..++ .
T Consensus 311 ------------~~~ssp~i--~g-------------~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~~~~sp~~--~ 360 (377)
T TIGR03300 311 ------------RQLTAPAV--VG-------------GYLVVGDFEGYLHWLSREDG-SFVARLKTDGSGIASPPVV--V 360 (377)
T ss_pred ------------CccccCEE--EC-------------CEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccccCCEE--E
Confidence 00000000 01 16888899999999999887 66666665554332 2222 2
Q ss_pred CCEEEEEeCCCeEEEE
Q 047837 532 GRKILSCSADRSLVVR 547 (882)
Q Consensus 532 ~~~l~s~~~dg~i~vw 547 (882)
+..|+.++.||.|+.+
T Consensus 361 ~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 361 GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCceEEEe
Confidence 3468889999988765
No 275
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.2e-08 Score=109.77 Aligned_cols=200 Identities=12% Similarity=0.074 Sum_probs=129.6
Q ss_pred cEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC---CeEEEEeCccCccceeeeccceecccCCceEEEEE
Q 047837 500 TIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD---RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDI 576 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 576 (882)
.|.++|.... ....+..+...+....|+|||+.|+..+.+ ..|.+||+.++... .+.. ..+.+...+|
T Consensus 180 ~l~~~d~~g~--~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~------~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGA--RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITN------FEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCC--CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccC------CCCCcCCeEE
Confidence 4666776543 234455577789999999999999876643 36899999865432 2211 1134557899
Q ss_pred ecCCCEEEE-EeCCC--cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC-CC--cEEEEEccCCeEEEEE
Q 047837 577 DPTMEVVIT-VGQDK--KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS-NK--SICLYDFISGEMVAKA 650 (882)
Q Consensus 577 sp~~~~l~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg--~i~iwd~~~~~~~~~~ 650 (882)
+|||+.|+. ...++ .|++||+.+++... +. .+........|+|||+.|+..+. +| .|+++|+.+++... +
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence 999998874 44454 68888999876543 43 34455667899999998876553 33 68888888876433 2
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEe
Q 047837 651 MGHGEVITGVTFLPDCKHIVSVGGD-G--LQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRM 713 (882)
Q Consensus 651 ~~h~~~v~~l~~s~d~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 713 (882)
...........|+|||++|+..+.+ + .|.+||+.++... .+..........|+|++..++..
T Consensus 327 t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~ 391 (430)
T PRK00178 327 TFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYA 391 (430)
T ss_pred ecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEE
Confidence 2122334467899999999877643 3 5888998775432 22222222345677777655443
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=2.8e-08 Score=103.77 Aligned_cols=292 Identities=12% Similarity=0.097 Sum_probs=188.4
Q ss_pred CCCCCcEEEeecCCCeEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 308 PTIPNAIACQFSTSEKLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
|......++.|+....++++ +.||.+++..+.+...... ..| -.....+.....+.+|+..|.-+.|+ ...+.|
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~---~~g-laa~snLsmNQtLeGH~~sV~vvTWN-e~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLN---KSG-LAAASNLSMNQTLEGHNASVMVVTWN-ENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccc---ccc-cccccccchhhhhccCcceEEEEEec-cccccc
Confidence 34444568899988766665 5599999998876543221 111 12344455566778999999999998 777889
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
-|...+|.|.+|-+-.+.-..+.. -......
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMi-------------------------------------------------NnRnKSv 117 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMI-------------------------------------------------NNRNKSV 117 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHh-------------------------------------------------hCcCccE
Confidence 999999999999987765433221 1123345
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
|.+++|+.+|. .++....||.|.+=.++.+.---+.+++ .....+.|++|.+.++.+-..|.+.+
T Consensus 118 V~SmsWn~dG~-------------kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 118 VVSMSWNLDGT-------------KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHL 182 (1189)
T ss_pred EEEEEEcCCCc-------------EEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEE
Confidence 66677777766 5666667776666555443111122222 12346889999999988888999999
Q ss_pred EeCccCccc-----eeeeccceecccCCceEEEEEe--------cCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCC
Q 047837 547 RDVVETNSA-----YKISRRHQQLASQGTVYDMDID--------PTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 547 wd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s--------p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
||.+..-.. ...............|..+.|. ||-..|+++-.+|.+.+-.-........+. ..-
T Consensus 183 ydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d---tgm 259 (1189)
T KOG2041|consen 183 YDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD---TGM 259 (1189)
T ss_pred ecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe---ccc
Confidence 998632110 0000000000011134444443 577889999999998887655443333332 235
Q ss_pred CcEEEEECCCCCEEEEEeCCC---------cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEE
Q 047837 614 DPMKVTVDPSGSYLVCSYSNK---------SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 672 (882)
.+..+.|+++|..||+++.+. .|..|. .-|+.+.+++.....|++++|-..|-.++.+
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 788899999999999987542 556555 4578888888888899999997766555543
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.3e-07 Score=112.50 Aligned_cols=274 Identities=13% Similarity=0.134 Sum_probs=159.6
Q ss_pred CCCCccccCCCCCeEEEee-ceEEEEEECCCCceEEEEEecCC------------CCCeEEEEEcCCCCEEEEeecCCCC
Q 047837 2 KPNHNIKKPDSSSKCAYVA-GCVLVVYDVDSSTQSHLMVSHRM------------PKPLCCVAMSRDGRYVAAGESGPQP 68 (882)
Q Consensus 2 ~~~~~~~~pd~~~~~~~~~-~~~v~vwd~~~~~~~~~l~~h~~------------~~~I~~va~spdg~~la~g~~~~d~ 68 (882)
+|+++++.+++...++.-. ++.|.++|... ..+..+.+-.. -.....|++++++..|+++..+ +.
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-n~ 646 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-NH 646 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-Cc
Confidence 5778888887553333333 46899999864 44444332110 0135789999999888887542 56
Q ss_pred eEEEEECCCceeeEEeecc-----------------ccceeEEEECCC-CCEEEEEc--CEEEEEEcCcceeeeeeecC-
Q 047837 69 AVLVWDCANLAFISELKGH-----------------LYGVECIAFSPD-GEHLVTVG--GYIYLWNWRSAMLVMKLKAN- 127 (882)
Q Consensus 69 ~I~vwd~~t~~~~~~l~~h-----------------~~~V~~lafspd-g~~Las~~--~~i~iWd~~~g~~~~~~~~~- 127 (882)
.|+++|..++. +.++.+- -..-..++|+|+ +.++++.. +.|++||..++.... +.+.
T Consensus 647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence 89999998765 3444220 112357999995 44444443 899999998876432 1111
Q ss_pred ------------CcccceeEEEEccCCCEEEEECC--CcEEEEEcccCccceeccccCccceeecCccccccccccceEE
Q 047837 128 ------------SSCSAITSACFSSDAKFIVTAGK--KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFV 193 (882)
Q Consensus 128 ------------~~~~~v~~l~fs~d~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 193 (882)
........++|+||++.|+++.. +.|++||+.++.. ... ..+.++... .
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--~~~--------~gg~~~~~~----~--- 787 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--RLL--------AGGDPTFSD----N--- 787 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE--EEE--------EecccccCc----c---
Confidence 01134567999999986665543 6899999876543 000 000000000 0
Q ss_pred EeeecccccCCcccccccCceeEEEEEc-cCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeeccc
Q 047837 194 SVISATWTDNGVVNQEQAGESFTIYALT-DAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQS 272 (882)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 272 (882)
++... .+|. ..........+++++++|..+++-..++.|++||..+
T Consensus 788 -----------------------l~~fG~~dG~----------g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 788 -----------------------LFKFGDHDGV----------GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred -----------------------cccccCCCCc----------hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 00000 0000 0000111226899999999888888999999999987
Q ss_pred ceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeC-CceEEEEEcccccc
Q 047837 273 LKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNE 343 (882)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~ 343 (882)
+.......... .+... .............++++++|+++++.. ++.|++||+.++..
T Consensus 835 g~v~tiaG~G~----~G~~d----------G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 835 KRVTTLAGTGK----AGFKD----------GKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CeEEEEeccCC----cCCCC----------CcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 65543221000 00000 000112223456889999999776654 89999999987643
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=1.3e-07 Score=101.29 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=92.3
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCE-EEEeecC-CCCeEEEEECCCceeeEEeeccccceeEEEECCCC
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRY-VAAGESG-PQPAVLVWDCANLAFISELKGHLYGVECIAFSPDG 100 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~-la~g~~~-~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg 100 (882)
.|.+-|.+.......+.+ +.+....|||||+. ++..+.. .+..|+++|+.+++..... ...+.+...+|||||
T Consensus 170 ~l~~~d~dg~~~~~~~~~----~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKG----GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCceeEEccC----CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCC
Confidence 789988876554434322 35778999999985 6655443 3678999999988764433 355566778899999
Q ss_pred CEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--C--cEEEEEcccCcc
Q 047837 101 EHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--K--HLKFWTIGSSAT 163 (882)
Q Consensus 101 ~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~--~i~iwd~~~~~~ 163 (882)
+.|+... ..|.++|+.+++.. .+..+. .......|+|||+.|+..++ + .|.+.++.+++.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~--~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYP--GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE-EcccCC--CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 9887543 68999998888643 343332 23345689999998888775 3 566667665543
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=2.1e-07 Score=110.83 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=113.7
Q ss_pred EEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccc-e--------ecccCCceEEEEEecCCCEE-EEEeCCCc
Q 047837 523 VTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRH-Q--------QLASQGTVYDMDIDPTMEVV-ITVGQDKK 591 (882)
Q Consensus 523 v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~--------~~~~~~~v~~~~~sp~~~~l-~~~~~d~~ 591 (882)
...++|+| ++..+++.+.++.|++||...+... .+.... . ..........++++|+++.| ++-..++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 46799999 5666677778899999998754321 111000 0 00011345679999999855 45556789
Q ss_pred EEEEEccCCceEEEEEe-----------c--------cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc-
Q 047837 592 INSFSIAAGKLIRSFKQ-----------A--------KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAM- 651 (882)
Q Consensus 592 v~iwd~~~~~~~~~~~~-----------~--------~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~- 651 (882)
|++||+.++........ . ........++++++|.++++-..++.|++||..++.......
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 99999987653211100 0 011246789999999998998899999999998876553321
Q ss_pred ------------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 652 ------------GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 652 ------------~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
+.......|+++++|+.+++-+.++.|++||+.+...
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1123577899999999988888999999999987653
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=3.8e-09 Score=99.19 Aligned_cols=286 Identities=15% Similarity=0.218 Sum_probs=175.2
Q ss_pred eeeeEEEecCCCEEEEEecCCeEEeeecccce-ecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 243 VKNGFALSASSKLIACACSNGAVHLFDIQSLK-HAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
.++++.|...|.+|++|...|.|.+|.-+... +...+ -..+++|...+. +.........+..+.|..+
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf----~teFQshe~EFD-------YLkSleieEKin~I~w~~~ 96 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKF----FTEFQSHELEFD-------YLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhh----hhhhcccccchh-------hhhhccHHHHhhheeeecC
Confidence 34889999999999999999999999866433 11111 112234433222 1111122234556666655
Q ss_pred C---eEEEEeCCceEEEEEcccccccc------------------------eeeeeecCcceeeeecccCC-CCCCCCCc
Q 047837 322 E---KLVVVYGDHSLYVWDIHDVNEAT------------------------RCCVLVSHSACIWDIKNLGC-ENMHDPSV 373 (882)
Q Consensus 322 ~---~ll~~~~d~~i~iwd~~~~~~~~------------------------~~~~~~~~~~~v~~i~~~~~-~~~h~~~v 373 (882)
+ .++..+.|.+|++|.+....... ....+ .|...+-....... ...|.-.|
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl-s~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL-SEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc-cccceEEEeccceeccccceeEe
Confidence 4 48889999999999986542100 00011 12222222222221 26789999
Q ss_pred ceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcC
Q 047837 374 SCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSS 453 (882)
Q Consensus 374 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 453 (882)
.++.+. .|.+.++++ .|=.|.+|+++-.. +.+..+.+-|
T Consensus 176 NSiS~N-sD~et~lSa-DdLrINLWnl~i~D---------------------------------------~sFnIVDiKP 214 (460)
T COG5170 176 NSISFN-SDKETLLSA-DDLRINLWNLEIID---------------------------------------GSFNIVDIKP 214 (460)
T ss_pred eeeeec-Cchheeeec-cceeeeeccccccC---------------------------------------CceEEEeccC
Confidence 999998 677777766 46789999987422 1233333333
Q ss_pred CCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee-----E----------EEeec
Q 047837 454 RGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL-----I----------ESIDD 518 (882)
Q Consensus 454 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~-----~----------~~~~~ 518 (882)
.. +..-..-|++..|+|... +.+.-.+..|.|++-|++....+ + ..+.+
T Consensus 215 ~n----meeLteVItSaeFhp~~c------------n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e 278 (460)
T COG5170 215 HN----MEELTEVITSAEFHPEMC------------NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE 278 (460)
T ss_pred cc----HHHHHHHHhhcccCHhHc------------ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHH
Confidence 22 111223466777777654 25666777899999999842111 1 11223
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecc-------cCCce---EEEEEecCCCEEEEEeC
Q 047837 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLA-------SQGTV---YDMDIDPTMEVVITVGQ 588 (882)
Q Consensus 519 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~v---~~~~~sp~~~~l~~~~~ 588 (882)
-...|..+.|+++|+++++-+. -++++||++....+......|.... ..+.| ..+.|+.|.+.+++|+.
T Consensus 279 ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 279 IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 3467889999999999998775 5799999987776665544333211 12233 35788889999999988
Q ss_pred CCcEEEEEcc
Q 047837 589 DKKINSFSIA 598 (882)
Q Consensus 589 d~~v~iwd~~ 598 (882)
....-+|-..
T Consensus 358 ~NNfgiyp~~ 367 (460)
T COG5170 358 SNNFGIYPTD 367 (460)
T ss_pred ccceeeeccc
Confidence 8777777643
No 281
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=5.4e-08 Score=104.95 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=124.5
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEE---EEeCC--CeEEEEeCccCccceeeeccceecccCCceEE
Q 047837 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKIL---SCSAD--RSLVVRDVVETNSAYKISRRHQQLASQGTVYD 573 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~---s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 573 (882)
..|.+.|.... ..+.+......+..-+|+|||+.++ +...+ ..|.+.++..++. .++... .+....
T Consensus 165 ~~l~~~d~dG~--~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~------~g~~~~ 235 (428)
T PRK01029 165 GELWSVDYDGQ--NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILAL------QGNQLM 235 (428)
T ss_pred ceEEEEcCCCC--CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecC------CCCccc
Confidence 35666666543 2333444555677889999997532 34334 3577778875543 222211 134556
Q ss_pred EEEecCCCEEEEEeC-CC----cEEEEEccCC---ceEEEEEeccCCCCcEEEEECCCCCEEEEEe-CCCcEEEE--Ecc
Q 047837 574 MDIDPTMEVVITVGQ-DK----KINSFSIAAG---KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY-SNKSICLY--DFI 642 (882)
Q Consensus 574 ~~~sp~~~~l~~~~~-d~----~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~i~iw--d~~ 642 (882)
.+|+|||+.|+..+. +| .+..|++..+ +..+... .........+|+|||+.|+..+ .+|...|| ++.
T Consensus 236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec--CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 899999998887653 22 3445777653 3333322 2223456789999999887665 45644444 543
Q ss_pred C-CeEEEEEccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEe
Q 047837 643 S-GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD---GLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRM 713 (882)
Q Consensus 643 ~-~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 713 (882)
. +.....+..+...+....|+|||++|+..+.+ ..|.+||+.++................|++++..++..
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE
Confidence 2 33344455555677889999999999877643 47999999877654333233344567788877665543
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.02 E-value=2.7e-09 Score=104.45 Aligned_cols=167 Identities=13% Similarity=0.155 Sum_probs=118.5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC---CcEEEEEccC
Q 047837 523 VTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD---KKINSFSIAA 599 (882)
Q Consensus 523 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~ 599 (882)
...+..++.++++|.+..+....++++.......++.... .-...-+++.|..+...+..+..- ..+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~---~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS---CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe---ecccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 4456677788888888888877777776444322221111 111234455555555555554444 4555666555
Q ss_pred CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEE-EccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 047837 600 GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAK-AMGHGEVITGVTFLPDCKHIVSVGGDGLQ 678 (882)
Q Consensus 600 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~i 678 (882)
+.+...+ +|-.-++.++|+||+++++++..|..|++-....--.+.. .-||..-|..++.-++ +.|+++|.|+++
T Consensus 142 ~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tl 217 (390)
T KOG3914|consen 142 GRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTL 217 (390)
T ss_pred cCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcE
Confidence 6655555 8999999999999999999999999999988776555544 3579999999998655 569999999999
Q ss_pred EEEeCCCCCCCcccCCCC
Q 047837 679 RVKEKYGILPPRNFAQPA 696 (882)
Q Consensus 679 ~vwd~~~~~~~~~~~~~~ 696 (882)
++||+.+++.+.++....
T Consensus 218 r~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCDLSS 235 (390)
T ss_pred EEEecccCCcccccchhH
Confidence 999999999887765443
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=4.3e-09 Score=110.15 Aligned_cols=210 Identities=14% Similarity=0.200 Sum_probs=149.4
Q ss_pred EEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEE
Q 047837 458 LLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 458 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 537 (882)
+++.+|...|+.+.|+|..+ ..+++++.|-.+..||+++...++.....-......++|+.....+.+
T Consensus 108 f~lhghsraitd~n~~~q~p------------dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHP------------DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred EEEecCccceeccccCCCCC------------cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh
Confidence 35678999999999999876 389999999999999999876777777766677788999985444555
Q ss_pred EeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC-CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcE
Q 047837 538 CSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT-MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPM 616 (882)
Q Consensus 538 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 616 (882)
.+....|.+||.+.+.........+ ...|+.++|..- ...+.+.+.|++|++||......-.... .....++.
T Consensus 176 sshg~~i~vwd~r~gs~pl~s~K~~-----vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw 249 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTPLCSLKGH-----VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIW 249 (1081)
T ss_pred hccCCceEEEeccCCCcceEEeccc-----ceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-ccccCcce
Confidence 5566779999999877665555443 357788888653 3467888999999999987543221111 02345666
Q ss_pred EEEECCCCC--EEEEEeCCCcEEE---------EEccC-CeEEEEEccCCCCeEEEEECCCCC----------EEEEEeC
Q 047837 617 KVTVDPSGS--YLVCSYSNKSICL---------YDFIS-GEMVAKAMGHGEVITGVTFLPDCK----------HIVSVGG 674 (882)
Q Consensus 617 ~~~~spdg~--~l~~~~~dg~i~i---------wd~~~-~~~~~~~~~h~~~v~~l~~s~d~~----------~l~s~~~ 674 (882)
.-.+-|=|. ++.---.+..+.+ |+..+ .++++.+.||+..|....|-..+. .|+|-+.
T Consensus 250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 777777433 3221111223333 44433 367999999999998887754222 6999999
Q ss_pred CCeEEEEeCCC
Q 047837 675 DGLQRVKEKYG 685 (882)
Q Consensus 675 dg~i~vwd~~~ 685 (882)
|..+|+|-+.+
T Consensus 330 D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 330 DQTLRLWPIDS 340 (1081)
T ss_pred CCceEeeeccH
Confidence 99999999974
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.2e-09 Score=110.24 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=158.9
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc------eeEEEeecCCCCEEEEEEccCC
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF------DLIESIDDHSAAVTAVKFTCNG 532 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~------~~~~~~~~h~~~v~~~~~s~~~ 532 (882)
-+.+|...|..++--.+.+ -+++++.|.+|++|.++... .+..+++.|+.+|.++.|-.+-
T Consensus 730 nf~GH~~~iRai~AidNEN-------------SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNEN-------------SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL 796 (1034)
T ss_pred cccCcHHHhHHHHhccccc-------------ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc
Confidence 3568888888776555544 68999999999999987521 2556778999999999999998
Q ss_pred CEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec--CCCEEEEE-eCCCcEEEEEccCCceEEEEEec
Q 047837 533 RKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP--TMEVVITV-GQDKKINSFSIAAGKLIRSFKQA 609 (882)
Q Consensus 533 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~ 609 (882)
++++++ ||.|.+||.-.+....++..... .+.+..+..-+ +...++.+ +...+|+++|.+.++-...++..
T Consensus 797 r~i~Sc--D~giHlWDPFigr~Laq~~dapk----~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 797 RSIASC--DGGIHLWDPFIGRLLAQMEDAPK----EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred ceeeec--cCcceeecccccchhHhhhcCcc----cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence 888766 67899999876665544433222 12333333333 33344444 67889999999998877776532
Q ss_pred ---cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEE-EeCCC
Q 047837 610 ---KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV-KEKYG 685 (882)
Q Consensus 610 ---~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~v-wd~~~ 685 (882)
+...-+.+++..+.|+++|++-.+|.|.+.|.++|+.+..++.-.-....++ .|..+.|+....|.++.+ |..-+
T Consensus 871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 3445688999999999999999999999999999999988876544454554 466778888888999998 98777
Q ss_pred CCCCcccC
Q 047837 686 ILPPRNFA 693 (882)
Q Consensus 686 ~~~~~~~~ 693 (882)
+....+..
T Consensus 950 gimh~q~k 957 (1034)
T KOG4190|consen 950 GIMHLQDK 957 (1034)
T ss_pred CeeeeccC
Confidence 66555443
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.7e-09 Score=123.98 Aligned_cols=198 Identities=15% Similarity=0.227 Sum_probs=153.6
Q ss_pred CCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
-..|.++.-+ |...+.+||+.||.+++|....++.+...
T Consensus 2208 v~~v~r~~sH-p~~~~Yltgs~dgsv~~~~w~~~~~v~~~---------------------------------------- 2246 (2439)
T KOG1064|consen 2208 VENVRRMTSH-PSDPYYLTGSQDGSVRMFEWGHGQQVVCF---------------------------------------- 2246 (2439)
T ss_pred cCceeeecCC-CCCceEEecCCCceEEEEeccCCCeEEEe----------------------------------------
Confidence 3455556555 56667889999999999998876654211
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
-.+....|+.+.|+..|. .+..+..||.+.+|.+. .+.....+.|.....++.|-
T Consensus 2247 ----------rt~g~s~vtr~~f~~qGn-------------k~~i~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2247 ----------RTAGNSRVTRSRFNHQGN-------------KFGIVDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred ----------eccCcchhhhhhhcccCC-------------ceeeeccCCceeecccC--CcceeccccCCccccceeee
Confidence 112236778888888877 78888999999999987 36677788899999999996
Q ss_pred cCCCEEEEEe---CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 530 CNGRKILSCS---ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 530 ~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
. ..+++++ .++.+.+||........-+. ..|.+.++++++.|....|++|+.+|.|++||++..++.+.+
T Consensus 2302 ~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-----~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-----TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred e--hhhhccccCCCCCcccchhcccCcccceee-----eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 5 5666654 46889999976443332222 566789999999999999999999999999999998888777
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG 652 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 652 (882)
+ . +. ...++++|+..|.|+||++.....++.+..
T Consensus 2375 ~--~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2375 Q--A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred h--h---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 6 2 34 567999999999999999998877777654
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=4.9e-08 Score=104.37 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred CccccCCCCCeEEEee----ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEee-cCCCCeEEEEECCCce
Q 047837 5 HNIKKPDSSSKCAYVA----GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGE-SGPQPAVLVWDCANLA 79 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~----~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~-~~~d~~I~vwd~~t~~ 79 (882)
...|+|||...++|.. ...|.++|+.+++..... ... +...+.+|||||+.||... .+++..|.++|+.+++
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQ--GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCC--CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 3578999875566643 247999999998876554 333 5677889999998887654 3446789999998887
Q ss_pred eeEEeeccccceeEEEECCCCCEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC
Q 047837 80 FISELKGHLYGVECIAFSPDGEHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG 149 (882)
Q Consensus 80 ~~~~l~~h~~~V~~lafspdg~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~ 149 (882)
. ..+..+........|+|||+.|+..+ ..|++.|+.+|+..+..... .. ...|+|||+.|+...
T Consensus 269 ~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g---~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 269 L-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG---KN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred E-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC---Cc--CceECCCCCEEEEEE
Confidence 4 44554554445678999999888776 48999999888764433221 11 248999999988765
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=2.8e-07 Score=85.29 Aligned_cols=188 Identities=10% Similarity=-0.037 Sum_probs=126.9
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
-+..++.|.++++.++.-+. .........-.+.++++++|++++++.+....|..|.+........- .......+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s-~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~ 205 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDS-NKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDH 205 (344)
T ss_pred ceeeccCCcceeEEEEecCc-ccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCC
Confidence 46677888888888876531 11111111123789999999999999999999999999754332221 111122345
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE---EeccCCCCcEEEEECCCCC--EEEEEeCCCcEEEEEccCCe
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF---KQAKDFGDPMKVTVDPSGS--YLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~spdg~--~l~~~~~dg~i~iwd~~~~~ 645 (882)
-.+..|+.....+|++.+||++.|||++.-...... ....|.+.+..+.|++-|. +|...-.-+.+.+-|+++++
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 678899999999999999999999999864332221 1235889999999998664 45555566789999999986
Q ss_pred EEEEEc-------cCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 646 MVAKAM-------GHG-EVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 646 ~~~~~~-------~h~-~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
-.+.+. .|. ..|..-.|+.++..+.+..++. +.-|++
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni 330 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNI 330 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccchh-hheeec
Confidence 544432 233 3377778888777666655442 333444
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=9e-09 Score=107.87 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=179.5
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccce-ecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCC-
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLK-HAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSE- 322 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~- 322 (882)
.++.++|.|+-+|.++.-|-. +.|+...- ...-+ -|. ..-.+-...|++.-
T Consensus 28 ~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l---------~h~-----------------tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWL---------HHI-----------------TPWQVADVQWSPHPA 80 (1081)
T ss_pred cceeeccccchhhhhhhcCeE-EEeccCCCCCceee---------ecc-----------------CcchhcceecccCCC
Confidence 788999999999999877754 44554321 11100 010 11112234566553
Q ss_pred --eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEec
Q 047837 323 --KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 323 --~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~ 400 (882)
..++......-.+|++........-..+.||+..|.++.| .+.....+++++.|-.+..||+
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~----------------~~q~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINF----------------NPQHPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEecCccceecccc----------------CCCCCcceeeccccccceeeec
Confidence 3555566667778988665544444566666666666554 4566778999999999999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
++..... . .+..-...-..++|+....
T Consensus 145 rSp~~p~---------------------------------------y-----------s~~~w~s~asqVkwnyk~p--- 171 (1081)
T KOG0309|consen 145 RSPHRPF---------------------------------------Y-----------STSSWRSAASQVKWNYKDP--- 171 (1081)
T ss_pred cCCCcce---------------------------------------e-----------eeecccccCceeeecccCc---
Confidence 8654211 1 1112223334566666554
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeee
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKIS 559 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 559 (882)
.+.+.+..+.|.+||.+.+..++..+++|...|..++|.. ....+.+++.|++|+.||........+..
T Consensus 172 ----------~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 172 ----------NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred ----------chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 4555566678999999998889999999999999999976 34567889999999999987543322211
Q ss_pred ccceecccCCceEEEEEecCCCEEEE-----------EeCCCcEEEEEccC-CceEEEEEeccCCCCcEEEEECC-----
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVIT-----------VGQDKKINSFSIAA-GKLIRSFKQAKDFGDPMKVTVDP----- 622 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~~-----------~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~sp----- 622 (882)
... ..+|..-.+.|-|+-..+ --.+.....|+..+ .+.+.+|. +|...|....|-.
T Consensus 242 vtt-----~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~ 314 (1081)
T KOG0309|consen 242 VTT-----NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECD 314 (1081)
T ss_pred ccc-----cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec--CcchHHHHHhhhhccccc
Confidence 111 134555555554332211 11122223344433 35778887 8888877655533
Q ss_pred ---CC--CEEEEEeCCCcEEEEEccC
Q 047837 623 ---SG--SYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 623 ---dg--~~l~~~~~dg~i~iwd~~~ 643 (882)
|. -.|++-+.|..+++|-+.+
T Consensus 315 ~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 315 GDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCCccceeEEEeecCCceEeeeccH
Confidence 22 2699999999999998853
No 289
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.94 E-value=1.4e-07 Score=88.44 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=141.2
Q ss_pred CCcEEEEEcCCCcee-EEEe-ecCCCCEEEEEEcc---CCC-EEEEEeCCCeEEEEeCccCccceeeeccceecccCCce
Q 047837 498 DRTIHLYDVKRNFDL-IESI-DDHSAAVTAVKFTC---NGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTV 571 (882)
Q Consensus 498 dg~v~iwd~~~~~~~-~~~~-~~h~~~v~~~~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 571 (882)
.|.+.+|++...... ..++ ..-...+..+.|.. +|. .++-+..+|.|.++..........+.......-.....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 367888887653111 1111 12334566677754 455 56677788999999877544333332211100011135
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEccCCceEE--EEEeccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEEcc-CCeEE
Q 047837 572 YDMDIDPTMEVVITVGQDKKINSFSIAAGKLIR--SFKQAKDFGDPMKVTVDP-SGSYLVCSYSNKSICLYDFI-SGEMV 647 (882)
Q Consensus 572 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~-~~~~~ 647 (882)
.++.|++.+..+++...+|.+.+-+.....+.. ..+ .|.-++.-+.|+. +.+++.+|++|+.+..||++ .++.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk--~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK--VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc--ccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 678899999999999999999976666555444 555 8889999999987 44688999999999999998 44444
Q ss_pred EE-EccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC-CCCCcccCCCCCcccEEEecCCC
Q 047837 648 AK-AMGHGEVITGVTFLP-DCKHIVSVGGDGLQRVKEKYG-ILPPRNFAQPAALSPIIFCEEED 708 (882)
Q Consensus 648 ~~-~~~h~~~v~~l~~s~-d~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~s~~~~ 708 (882)
.. .+-|...|.++.-+| ++.+++||+.|..|++||.++ .+++..-...+.+.++.-.|...
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 43 456899999998876 578999999999999999985 44444334445566666665543
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.92 E-value=7.8e-07 Score=84.13 Aligned_cols=203 Identities=12% Similarity=0.107 Sum_probs=132.0
Q ss_pred EEEEEcCCCcEEEEEcCCCceeE-EEee---cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceec-
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLI-ESID---DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL- 565 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~-~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~- 565 (882)
+|| .-.|..|.|-..+..+..+ .... .....=+.++||||+..||.+...|+|+++|+.. .....+.......
T Consensus 11 ~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~ 88 (282)
T PF15492_consen 11 LLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPG 88 (282)
T ss_pred EEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCC
Confidence 444 3456677777666543221 2222 2233457899999999999999999999999984 3344443332211
Q ss_pred ccCCceEEEEEecCC------CEEEEEeCCCcEEEEEccC-----CceEEEEEecc-CCCCcEEEEECCCCCEEEEEeC-
Q 047837 566 ASQGTVYDMDIDPTM------EVVITVGQDKKINSFSIAA-----GKLIRSFKQAK-DFGDPMKVTVDPSGSYLVCSYS- 632 (882)
Q Consensus 566 ~~~~~v~~~~~sp~~------~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~- 632 (882)
.-...|..+.|.+.. ..|++-..+|.++-|-+.. .+...++.... ....|.++.++|.-++|++|+.
T Consensus 89 d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 89 DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence 123467777776532 2466667888888777643 23444444322 4678999999999888877653
Q ss_pred ---C-------CcEEEEEccCCeEEE--------------------EE---------ccCCCCeEEEEECCCCCEEEEEe
Q 047837 633 ---N-------KSICLYDFISGEMVA--------------------KA---------MGHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 633 ---d-------g~i~iwd~~~~~~~~--------------------~~---------~~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
+ .-+.-|.+-++.+.. .+ ......|..|..||||+.||+..
T Consensus 169 ~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 169 QNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred CCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 1 135566653321110 00 11346788999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcccCCC
Q 047837 674 GDGLQRVKEKYGILPPRNFAQP 695 (882)
Q Consensus 674 ~dg~i~vwd~~~~~~~~~~~~~ 695 (882)
.+|.|.+|++........+...
T Consensus 249 ~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 249 FSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cCCeEEEEecCcchhhcccchh
Confidence 9999999999998887766443
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=3e-07 Score=85.05 Aligned_cols=195 Identities=14% Similarity=0.126 Sum_probs=139.9
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccC-CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCN-GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQG 569 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 569 (882)
+||.|+..|...+|...++...+.....|...|+-+.-..+ .-.+..++.|.++++.++.-+.......... -
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~------~ 159 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN------L 159 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc------c
Confidence 79999999999999999875666666666665543322222 2346677888888888887433222221111 1
Q ss_pred ceEEEEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC-eEE
Q 047837 570 TVYDMDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG-EMV 647 (882)
Q Consensus 570 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~-~~~ 647 (882)
.+.++++++|++++++.+....|..|.+... +.+...........-.+..|+.....+|++..||++.|||++.. .+.
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 4889999999999999999999999998753 33333333355667788999999999999999999999999864 222
Q ss_pred E----EEccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeCCCCCCCcc
Q 047837 648 A----KAMGHGEVITGVTFLPDCK--HIVSVGGDGLQRVKEKYGILPPRN 691 (882)
Q Consensus 648 ~----~~~~h~~~v~~l~~s~d~~--~l~s~~~dg~i~vwd~~~~~~~~~ 691 (882)
. +-..|.+.++.+.|++-|. +|+-.-.-+.+.+-|+++......
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 2 2345899999999998653 455555667889999988765543
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.87 E-value=3.4e-06 Score=91.03 Aligned_cols=315 Identities=15% Similarity=0.066 Sum_probs=176.6
Q ss_pred CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCce
Q 047837 253 SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHS 332 (882)
Q Consensus 253 ~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~ 332 (882)
+..+++++.+|.+.-+|.++|+.+-+............. ....+.+-....++++++++.++.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~v~v~~~~g~ 131 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKN-----------------KSALLSGGVTVAGGKVYIGSEKGQ 131 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccc-----------------cccccccccEEECCEEEEEcCCCE
Confidence 567888888899999999998877655432200000000 000000001112577888888999
Q ss_pred EEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccC
Q 047837 333 LYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLG 412 (882)
Q Consensus 333 i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 412 (882)
++.+|.++++....... . +.+. ....+ .+..++.+..+|.+..+|..+++.+.+....
T Consensus 132 l~ald~~tG~~~W~~~~-~---~~~~---------------ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 132 VYALNAEDGEVAWQTKV-A---GEAL---------------SRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred EEEEECCCCCCcccccC-C---Ccee---------------cCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 99999988875443211 0 1110 00011 2345666778899999999999887654322
Q ss_pred CccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEE
Q 047837 413 HESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFL 492 (882)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l 492 (882)
...+. ......++. . . ..+
T Consensus 190 ~~~~~------------------------------------------~~~~~sP~v----~-~--------------~~v 208 (394)
T PRK11138 190 VPSLT------------------------------------------LRGESAPAT----A-F--------------GGA 208 (394)
T ss_pred CCccc------------------------------------------ccCCCCCEE----E-C--------------CEE
Confidence 10000 000000000 0 0 035
Q ss_pred EEEcCCCcEEEEEcCCCceeEEEeec-CC---C---CEEEEEEcc--CCCEEEEEeCCCeEEEEeCccCccceeeeccce
Q 047837 493 ASGGRDRTIHLYDVKRNFDLIESIDD-HS---A---AVTAVKFTC--NGRKILSCSADRSLVVRDVVETNSAYKISRRHQ 563 (882)
Q Consensus 493 ~~g~~dg~v~iwd~~~~~~~~~~~~~-h~---~---~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 563 (882)
+.+..+|.+..+|..++. .+-.... .. . ....+..+| .+..++.++.+|.+..+|..+++...+....
T Consensus 209 ~~~~~~g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-- 285 (394)
T PRK11138 209 IVGGDNGRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG-- 285 (394)
T ss_pred EEEcCCCEEEEEEccCCh-hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--
Confidence 556666777777776652 2111110 00 0 011111222 3456777778899999999887665443211
Q ss_pred ecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 564 QLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 564 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
....+. .++..++.++.++.+..+|..+|+.+-......+ .......+ .+.+|+.++.+|.|++.|..+
T Consensus 286 ------~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 286 ------SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred ------CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 111122 2456777888999999999999987665431111 11222222 256778888999999999999
Q ss_pred CeEEEEEccCCCCeEE-EEECCCCCEEEEEeCCCeEEEEeC
Q 047837 644 GEMVAKAMGHGEVITG-VTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 644 ~~~~~~~~~h~~~v~~-l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
|+.+...+-....+.+ ..+ .+..|+.++.||.+..+++
T Consensus 355 G~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 355 GRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9988777543333322 222 2447888999999888764
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=9.9e-06 Score=81.18 Aligned_cols=171 Identities=18% Similarity=0.153 Sum_probs=111.2
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEeec-----CCCCEEEEEEccCCCEEEEEeCC--------CeEEEEeCccCccceee
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESIDD-----HSAAVTAVKFTCNGRKILSCSAD--------RSLVVRDVVETNSAYKI 558 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~ 558 (882)
++.+...+ +.++|..++ +....... .....+++++.|+|++.++.... |.|..++.. ......
T Consensus 54 l~v~~~~~-~~~~d~~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~ 129 (246)
T PF08450_consen 54 LYVADSGG-IAVVDPDTG-KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV 129 (246)
T ss_dssp EEEEETTC-EEEEETTTT-EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE
T ss_pred EEEEEcCc-eEEEecCCC-cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE
Confidence 45554444 566688775 32222221 34568899999999988876654 446666655 222222
Q ss_pred eccceecccCCceEEEEEecCCCEEE-EEeCCCcEEEEEccCCce----EEEEE-eccCCCCcEEEEECCCCCEEEEEeC
Q 047837 559 SRRHQQLASQGTVYDMDIDPTMEVVI-TVGQDKKINSFSIAAGKL----IRSFK-QAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 559 ~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~----~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
.... ...+.++|+|+++.|+ +-+..+.|..|++..... .+.+. .....+.+-.+++..+|++.++...
T Consensus 130 ~~~~------~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 130 ADGL------GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp EEEE------SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred ecCc------ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence 2222 4678999999999776 555678899999863221 12221 1122234788999999999998888
Q ss_pred CCcEEEEEccCCeEEEEEccCCCCeEEEEE-CCCCCEEEEEe
Q 047837 633 NKSICLYDFISGEMVAKAMGHGEVITGVTF-LPDCKHIVSVG 673 (882)
Q Consensus 633 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-s~d~~~l~s~~ 673 (882)
.+.|.++|.+ |+.+..+......+++++| -++.+.|+..+
T Consensus 204 ~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 204 GGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 9999999977 9988888766679999999 46766666544
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.8e-08 Score=101.93 Aligned_cols=175 Identities=17% Similarity=0.227 Sum_probs=125.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC-------ceeeEEeeccccceeEEEECCCCCEEEEEcC
Q 047837 36 HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN-------LAFISELKGHLYGVECIAFSPDGEHLVTVGG 108 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t-------~~~~~~l~~h~~~V~~lafspdg~~Las~~~ 108 (882)
..+.||. ..|.+++--.+.+-+++++. |.+|++|.+.. ..+..+...|+.+|..+.|-.|-+++++++|
T Consensus 729 ~nf~GH~--~~iRai~AidNENSFiSASk--DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~ 804 (1034)
T KOG4190|consen 729 CNFTGHQ--EKIRAIAAIDNENSFISASK--DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDG 804 (1034)
T ss_pred ecccCcH--HHhHHHHhcccccceeeccC--CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccC
Confidence 4567898 88998887777777778865 88999999862 3466778889999999999999999999999
Q ss_pred EEEEEEcCcceeeeeeecCCcccceeEEEEccC-CCEEEEEC--C-CcEEEEEcccCccceeccccCccceeecCccccc
Q 047837 109 YIYLWNWRSAMLVMKLKANSSCSAITSACFSSD-AKFIVTAG--K-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNL 184 (882)
Q Consensus 109 ~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d-~~~l~~~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 184 (882)
-|.+||.--|+++.........+.+..+..-++ .+.++.++ - .+|+++|....+-.. .+..-..+.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~--------E~kVcna~~-- 874 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC--------ELKVCNAPG-- 874 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee--------eEEeccCCC--
Confidence 999999999988875543332355555555554 33333333 3 689999987654310 000000000
Q ss_pred cccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCe
Q 047837 185 GIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGA 264 (882)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~ 264 (882)
. ...+++++..+.|++++++-.+|.
T Consensus 875 -------------------------------------P------------------na~~R~iaVa~~GN~lAa~LSnGc 899 (1034)
T KOG4190|consen 875 -------------------------------------P------------------NALTRAIAVADKGNKLAAALSNGC 899 (1034)
T ss_pred -------------------------------------C------------------chheeEEEeccCcchhhHHhcCCc
Confidence 0 011278999999999999999999
Q ss_pred EEeeecccceecccc
Q 047837 265 VHLFDIQSLKHAGTL 279 (882)
Q Consensus 265 I~vwd~~~~~~~~~~ 279 (882)
|.+.|..+|+.+...
T Consensus 900 i~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 900 IAILDARNGKVINSW 914 (1034)
T ss_pred EEEEecCCCceeccC
Confidence 999999999876543
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=6.3e-08 Score=95.09 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=105.6
Q ss_pred EEEEEcCCCcEEEEEcCCCce---eEEEeecCCCCEEEEEEccCCCEEEEEeCCC---eEEEEeCccCccceeeecccee
Q 047837 491 FLASGGRDRTIHLYDVKRNFD---LIESIDDHSAAVTAVKFTCNGRKILSCSADR---SLVVRDVVETNSAYKISRRHQQ 564 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~ 564 (882)
++|.+..+....+++...+.+ +..... -...-+++.|..+......+..-| .+.+|.... ......
T Consensus 76 llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-------~~~~~~ 147 (390)
T KOG3914|consen 76 LVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-------GRCEPI 147 (390)
T ss_pred EEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-------cCcchh
Confidence 888888888877777765422 222221 222334445544445544444434 444444432 122334
Q ss_pred cccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 047837 565 LASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 565 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~ 644 (882)
++|-..+++++|+||+++++++..|..|++-....--.+..+- -+|..-|..++.-++ +.|++++.|++|++||+.+|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-cccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence 5666899999999999999999999999998887666666654 479999999998765 45899999999999999999
Q ss_pred eEEEEEc
Q 047837 645 EMVAKAM 651 (882)
Q Consensus 645 ~~~~~~~ 651 (882)
+.+.++.
T Consensus 226 k~L~t~d 232 (390)
T KOG3914|consen 226 KLLDTCD 232 (390)
T ss_pred Ccccccc
Confidence 9887653
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.6e-07 Score=88.99 Aligned_cols=254 Identities=14% Similarity=0.167 Sum_probs=168.6
Q ss_pred cCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC-CCcEEE
Q 047837 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA-DGTIRL 397 (882)
Q Consensus 319 s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~-dg~i~v 397 (882)
....-.+.++-||.++.|.... +..+.+...+..|...|..++.+ .++-++.|.+. |..+++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~----------------isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSR----------------ISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred ehhheEEeeecchhhhhcCCCC----------------ccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeE
Confidence 3334466778899999997542 22334444455677777777777 88999999777 999999
Q ss_pred EecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCC
Q 047837 398 WDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSK 477 (882)
Q Consensus 398 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~ 477 (882)
+|+++-..+.-..... ..+...+..++.. .+..
T Consensus 81 fDvEn~DminmiKL~~-----------------------------lPg~a~wv~skGd----------~~s~-------- 113 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVD-----------------------------LPGFAEWVTSKGD----------KISL-------- 113 (558)
T ss_pred EEeeccchhhhccccc-----------------------------CCCceEEecCCCC----------eeee--------
Confidence 9998654331110000 0011111111111 1111
Q ss_pred CCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccC----
Q 047837 478 KDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVET---- 552 (882)
Q Consensus 478 ~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---- 552 (882)
+.++.-.++.+.++|-.... +....-.-|..+|..+.+++.+..+++....|.|..|.....
T Consensus 114 -------------IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 114 -------------IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred -------------EEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 23334467889999976654 333344569999999999999999999999999999998731
Q ss_pred ccceeeeccce-----ecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec------------------
Q 047837 553 NSAYKISRRHQ-----QLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA------------------ 609 (882)
Q Consensus 553 ~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------------------ 609 (882)
+....+...+. .........++.|+|++..+.+-..|..|++++.++|++++.+...
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 00000000010 1123356789999999999999999999999999999887665421
Q ss_pred -------------cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE
Q 047837 610 -------------KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 610 -------------~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~ 650 (882)
.....-+.++|...|++|+.++-=| |++.++.++++++.+
T Consensus 261 lgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 261 LGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0112335688999999999997765 899999999887765
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.78 E-value=1.2e-05 Score=76.37 Aligned_cols=250 Identities=16% Similarity=0.185 Sum_probs=138.4
Q ss_pred EeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcE
Q 047837 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTI 395 (882)
Q Consensus 316 ~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i 395 (882)
++.+.+|++++.-.|..|.|=...+.-.. .|-.... .....+.-.-++|+ +|+.+||.+...|+|
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~s-----------i~~kcqV---pkD~~PQWRkl~WS-pD~tlLa~a~S~G~i 67 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSS-----------IIGKCQV---PKDPNPQWRKLAWS-PDCTLLAYAESTGTI 67 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchh-----------eeEEEec---CCCCCchheEEEEC-CCCcEEEEEcCCCeE
Confidence 56678999999999998888766443211 1111111 12345566788998 899999999999999
Q ss_pred EEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecC
Q 047837 396 RLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLS 475 (882)
Q Consensus 396 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~ 475 (882)
+++|+...... ....... + ...-...|..+.|...
T Consensus 68 ~vfdl~g~~lf-~I~p~~~------------------------------------~--------~~d~~~Aiagl~Fl~~ 102 (282)
T PF15492_consen 68 RVFDLMGSELF-VIPPAMS------------------------------------F--------PGDLSDAIAGLIFLEY 102 (282)
T ss_pred EEEecccceeE-EcCcccc------------------------------------c--------CCccccceeeeEeecc
Confidence 99999753321 1100000 0 0001223333333332
Q ss_pred CCCCccceeccCCceEEEEEcCCCcEEEEEcC----CCceeEEEee---cCCCCEEEEEEccCCCEEEEEeCCCe-----
Q 047837 476 SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVK----RNFDLIESID---DHSAAVTAVKFTCNGRKILSCSADRS----- 543 (882)
Q Consensus 476 ~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~----~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~----- 543 (882)
.... .-...|++-..+|.++-|-+. .+++....+. .+...|.++.++|..+.|++++....
T Consensus 103 ~~s~-------~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s 175 (282)
T PF15492_consen 103 KKSA-------QWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS 175 (282)
T ss_pred cccc-------ccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc
Confidence 2100 000134444455666666542 2333444433 24778999999999888887764321
Q ss_pred ------EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEE
Q 047837 544 ------LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMK 617 (882)
Q Consensus 544 ------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 617 (882)
+..|.+-.+..-.+.. .+.+...-... .+..+|.+-+.+..... ......|..
T Consensus 176 ~a~~~GLtaWRiL~~~Pyyk~v----------------~~~~~~~~~~~---~~~~~~~~~~~~~fs~~--~~~~d~i~k 234 (282)
T PF15492_consen 176 KASSCGLTAWRILSDSPYYKQV----------------TSSEDDITASS---KRRGLLRIPSFKFFSRQ--GQEQDGIFK 234 (282)
T ss_pred cccccCceEEEEcCCCCcEEEc----------------cccCccccccc---cccceeeccceeeeecc--ccCCCceEE
Confidence 3333332221111110 00000010000 11233433322222111 145678999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccC
Q 047837 618 VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653 (882)
Q Consensus 618 ~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 653 (882)
|..||||.+||+...+|.|.+|++.+-++...+..+
T Consensus 235 mSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 999999999999999999999999988777766543
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=2.3e-07 Score=85.51 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=96.7
Q ss_pred CCcEEEEeeCCCcEEEEecCCCceeeeccc--CCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEE
Q 047837 382 GGVSFSTCSADGTIRLWDLALQSELSKDVL--GHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLL 459 (882)
Q Consensus 382 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 459 (882)
-+..++++..||.+.+.+.+.-..+..... ...............+..+. ...-...+......+.|.+....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~-----~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG-----CGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCC-----cceEeeccceeeecccccccccc
Confidence 456799999999999999875221111100 00001111111111111111 11111122334444444444433
Q ss_pred eeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEE
Q 047837 460 LDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSC 538 (882)
Q Consensus 460 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~ 538 (882)
.......|.+++-+|..+ +++++|+.||.+-+||.+....+...+..|+.+|..+-|+| ++..|+++
T Consensus 175 ~~~~~~~v~~l~~hp~qq------------~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 175 SKKALDAVTALCSHPAQQ------------HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred cccccccchhhhCCcccc------------cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 333344588888888766 48899999999999999987566677889999999999999 78899999
Q ss_pred eCCCeEEEEeCcc
Q 047837 539 SADRSLVVRDVVE 551 (882)
Q Consensus 539 ~~dg~i~vwd~~~ 551 (882)
+.||.+..||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999773
No 299
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.76 E-value=1.3e-05 Score=79.67 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=95.6
Q ss_pred eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec--------CCCCeEEEEECCCceeeEEeeccc---c-
Q 047837 22 CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES--------GPQPAVLVWDCANLAFISELKGHL---Y- 89 (882)
Q Consensus 22 ~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~--------~~d~~I~vwd~~t~~~~~~l~~h~---~- 89 (882)
..+.|+|.++++.+-.+..- -.-.+++||||+.+++++. ...-.|.+||.+|.++...+.-.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecc----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 48999999999987666443 2455889999999998642 112369999999998887654322 1
Q ss_pred ---ceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEccc
Q 047837 90 ---GVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGS 160 (882)
Q Consensus 90 ---~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~ 160 (882)
....+++|.||+++.... ..|.|-|++.++.+..+..+. ...+-=+++..+...|+||.+.-..++.
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETS
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECC
Confidence 234679999999999987 899999999999999888763 2222223355688889999988888873
No 300
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.73 E-value=2.2e-05 Score=84.43 Aligned_cols=173 Identities=16% Similarity=0.107 Sum_probs=108.9
Q ss_pred EccCCCEEEEEeCCCeEEEEeCcc----CccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CCcEEEEEccCCce
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVE----TNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DKKINSFSIAAGKL 602 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~ 602 (882)
+.++|++... .++.|.+.|..+ +......... ......++++|||+++++++. +.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 3457877665 357799999886 2222222222 247788999999998877664 78999999987553
Q ss_pred ------------EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC----------CeEEEEEccCCCCeE--
Q 047837 603 ------------IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS----------GEMVAKAMGHGEVIT-- 658 (882)
Q Consensus 603 ------------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~-- 658 (882)
+.+.. -.......+|.++|....+-.-|..|..||+.+ ...+..+.-|-.+..
T Consensus 356 ~~~~~~~~~~~vvaeve---vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~ 432 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPE---LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH 432 (635)
T ss_pred hhhccCCccceEEEeec---cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence 33332 244567789999999888888999999999976 344554544433222
Q ss_pred ---EEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEecccccccccCcCcCC
Q 047837 659 ---GVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQIG 728 (882)
Q Consensus 659 ---~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 728 (882)
+=.-.|||++|++...=..=|+-.+ ++. .|+.++++.+..++|.+..+....+
T Consensus 433 ~~~g~t~~~dgk~l~~~nk~skdrfl~v-gpl----------------~pen~qlidIsgdkM~lv~d~p~~~ 488 (635)
T PRK02888 433 ASMGETKEADGKWLVSLNKFSKDRFLPV-GPL----------------HPENDQLIDISGDKMKLVHDGPTFA 488 (635)
T ss_pred ecCCCcCCCCCCEEEEccccccccccCC-CCC----------------CCCcceeEEccCCeeEEEecCCCCC
Confidence 2223789999998753111111111 111 2345566666666666655554443
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=3e-05 Score=77.71 Aligned_cols=205 Identities=16% Similarity=0.125 Sum_probs=130.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc-cCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT-CNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQG 569 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 569 (882)
++++--..+.|+.|+..++.... +.... ...+++. +++ .|+.+...+ +.++|..+++...... .........
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~--~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~-~~~~~~~~~ 86 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEV--IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD-LPDGGVPFN 86 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEE--EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE-EETTCSCTE
T ss_pred EEEEEcCCCEEEEEECCCCeEEE--EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee-ccCCCcccC
Confidence 77777788999999998763322 22222 7778888 564 555555555 5666887653322221 110011235
Q ss_pred ceEEEEEecCCCEEEEEeCC--------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEE
Q 047837 570 TVYDMDIDPTMEVVITVGQD--------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLV-CSYSNKSICLYD 640 (882)
Q Consensus 570 ~v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~~dg~i~iwd 640 (882)
..+++++.|+|++.++.... +.|..++.. ++...... .....+.|+|+||++.|. +-+..+.|..|+
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECCcchheeecccccceeEEEe
Confidence 78899999999977776643 457777776 55444332 356688999999999775 556778899999
Q ss_pred ccC-Ce------EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCC-CCcccEEEecCC
Q 047837 641 FIS-GE------MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQP-AALSPIIFCEEE 707 (882)
Q Consensus 641 ~~~-~~------~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~s~~~ 707 (882)
+.. +. .+..+....+....+++..+|++.++....+.|.+++.. +.....+..+ .....++|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 863 22 222333333347899999999988888888999999988 5555555555 455677775444
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.68 E-value=2.3e-05 Score=84.69 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=63.6
Q ss_pred CCEEEEeecCCCCeEEEEECCCceeeEEeecccc-ce-e-----EEEECC--CCCEEEEEc--CEEEEEEcCcceeeeee
Q 047837 56 GRYVAAGESGPQPAVLVWDCANLAFISELKGHLY-GV-E-----CIAFSP--DGEHLVTVG--GYIYLWNWRSAMLVMKL 124 (882)
Q Consensus 56 g~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~-~V-~-----~lafsp--dg~~Las~~--~~i~iWd~~~g~~~~~~ 124 (882)
+..|+++.. ++.+.-+|.++|+.+....-... .+ . .+.-+| ++..++.++ +.++.+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADR--AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECC--CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 445666633 67899999999998877543210 00 0 011111 234444444 89999999999999887
Q ss_pred ecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCcc
Q 047837 125 KANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSAT 163 (882)
Q Consensus 125 ~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~ 163 (882)
.... .+.+--.-.++..++..+++.+.-+|..+++.
T Consensus 147 ~~~~---~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 147 KVAG---EALSRPVVSDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred cCCC---ceecCCEEECCEEEEECCCCEEEEEEccCCCE
Confidence 7552 22221111255556555668899999988876
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.65 E-value=5.6e-05 Score=74.35 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=114.7
Q ss_pred CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC------------------CCeEEEEeCccCccceee
Q 047837 497 RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA------------------DRSLVVRDVVETNSAYKI 558 (882)
Q Consensus 497 ~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------------------dg~i~vwd~~~~~~~~~~ 558 (882)
..|.|-|||...++..+.++..|.-.-..+.+.|||+.|+++-. +-.+.+.|..+++...+.
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 45899999999777889999988888889999999988876532 123444455544433332
Q ss_pred eccceecccCCceEEEEEecCCCEEEEEeCCC-------cEEEEEccCCceEEEEEe-----ccCCCCcEEEEECCCCCE
Q 047837 559 SRRHQQLASQGTVYDMDIDPTMEVVITVGQDK-------KINSFSIAAGKLIRSFKQ-----AKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 559 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~spdg~~ 626 (882)
... ...|.-.|..+++.++|..++..-..+ -|-+++. ++.+..+.. ..-.+.+-+|++++++.+
T Consensus 155 ~Lp--~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 155 ELP--PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred ecC--ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 110 012345799999999988776654333 2333332 333333321 123478899999999988
Q ss_pred EEEEe-CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 627 LVCSY-SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 627 l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
+++.+ .-+.+.+||..+++.+.... -..+..++-.+++ +++|.+.
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCC
Confidence 86554 56789999999999887764 3456677777777 6776654
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=6.4e-07 Score=84.60 Aligned_cols=211 Identities=13% Similarity=0.177 Sum_probs=140.2
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc----eeEEEeecCC------------CCEEEE
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF----DLIESIDDHS------------AAVTAV 526 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~----~~~~~~~~h~------------~~v~~~ 526 (882)
....|+++.|...|. ++++|...|.|.+|.-.... +....+++|. ..|..+
T Consensus 25 ead~ItaVefd~tg~-------------YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I 91 (460)
T COG5170 25 EADKITAVEFDETGL-------------YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAI 91 (460)
T ss_pred ccceeeEEEeccccc-------------eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhhe
Confidence 456788888888887 99999999999999876532 2233455554 357778
Q ss_pred EEccCC--CEEEEEeCCCeEEEEeCccCccce------------------------eee-------------ccceeccc
Q 047837 527 KFTCNG--RKILSCSADRSLVVRDVVETNSAY------------------------KIS-------------RRHQQLAS 567 (882)
Q Consensus 527 ~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~~------------------------~~~-------------~~~~~~~~ 567 (882)
.|-.++ ..++..+.|.+|++|.+....... .+. .......|
T Consensus 92 ~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH 171 (460)
T COG5170 92 EWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH 171 (460)
T ss_pred eeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc
Confidence 886643 356777889999999986431000 000 00001245
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE-EeccC-----CCCcEEEEECCCC-CEEEEEeCCCcEEEEE
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF-KQAKD-----FGDPMKVTVDPSG-SYLVCSYSNKSICLYD 640 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~-----~~~v~~~~~spdg-~~l~~~~~dg~i~iwd 640 (882)
...+.++.|..|.+.++++ .|-.|.+|++..-.....+ ....| ..-|++..|+|.. ..+...+..|.|++-|
T Consensus 172 ~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 172 PYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 5578899999998888874 6678999998753322222 11133 2357889999954 4556677889999999
Q ss_pred ccCCeE------EE----------EEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 641 FISGEM------VA----------KAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 641 ~~~~~~------~~----------~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
++...+ +. -+.+-...|..+.|+++|+++++-+. -+|+|||+.....
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 974311 11 11222457888999999999997765 6899999986543
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2e-07 Score=89.42 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=119.5
Q ss_pred EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-----ceEEEEEecc
Q 047837 536 LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-----KLIRSFKQAK 610 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~ 610 (882)
++.+.+-.|-+-|++++-... +...+.|.++.|...+.++..|+.+|.|..+|++.+ .+...+ -
T Consensus 228 fs~G~sqqv~L~nvetg~~qs--------f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---y 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS--------FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---Y 296 (425)
T ss_pred ecccccceeEEEEeecccccc--------cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---E
Confidence 455556668888888654322 122357889999998999999999999999999864 455555 4
Q ss_pred CCCCcEEEEECC-CCCEEEEEeCCCcEEEEEccCCeE---EEEEccCCCCeEEEE--ECCCCCEEEEEeCCCeEEEEeCC
Q 047837 611 DFGDPMKVTVDP-SGSYLVCSYSNKSICLYDFISGEM---VAKAMGHGEVITGVT--FLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 611 ~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~--~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
|...|+++..-. ++++|.+.+.+|+|++||.+--++ +..+.||...-.-+- ..+....++++|.|...|||.+.
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 888999998766 789999999999999999987666 888999876544443 45667789999999999999999
Q ss_pred CCCCCcccCCCCCc
Q 047837 685 GILPPRNFAQPAAL 698 (882)
Q Consensus 685 ~~~~~~~~~~~~~~ 698 (882)
.+..+.+...+...
T Consensus 377 ~ghLl~tipf~~s~ 390 (425)
T KOG2695|consen 377 SGHLLCTIPFPYSA 390 (425)
T ss_pred cCceeeccCCCCcc
Confidence 99888877666544
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=4.2e-08 Score=105.00 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=182.4
Q ss_pred CCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeecccc
Q 047837 365 CENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQ 444 (882)
Q Consensus 365 ~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (882)
.+..|+...+|++|+ .+.+.|+.|+..|.|+++++.++.....
T Consensus 1096 ~frd~~~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s------------------------------------ 1138 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEES------------------------------------ 1138 (1516)
T ss_pred hhhccccceeeEEee-cCCceEEeeeccceEEEEEccCcccccc------------------------------------
Confidence 346688899999999 8889999999999999999998875432
Q ss_pred CeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEc-CC-CcEEEEEcCCCceeEEEeecCCCC
Q 047837 445 GYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG-RD-RTIHLYDVKRNFDLIESIDDHSAA 522 (882)
Q Consensus 445 ~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~d-g~v~iwd~~~~~~~~~~~~~h~~~ 522 (882)
..+|...|+.+.-+.++. .+++.+ .. -...+|++.+.....+.+.+
T Consensus 1139 ---------------~ncH~SavT~vePs~dgs-------------~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e---- 1186 (1516)
T KOG1832|consen 1139 ---------------VNCHQSAVTLVEPSVDGS-------------TQLTSSSSSSPLSALWDASSTGGPRHSFDE---- 1186 (1516)
T ss_pred ---------------ccccccccccccccCCcc-------------eeeeeccccCchHHHhccccccCccccccc----
Confidence 446777787777777665 444433 33 35789999875556655543
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCce
Q 047837 523 VTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL 602 (882)
Q Consensus 523 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~ 602 (882)
-.++.|+.....-+.|+......+||+++...+.+...... .....-++..|+|+..+++ .|| .+||++..+.
T Consensus 1187 d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~--~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a 1259 (1516)
T KOG1832|consen 1187 DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV--TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA 1259 (1516)
T ss_pred cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch--hhhhhccccccCCCcceEe---eCc--eeeeeccHHH
Confidence 35788887654445555556699999998887766443322 1112336788999988776 344 5899998888
Q ss_pred EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEe--CC-----
Q 047837 603 IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVG--GD----- 675 (882)
Q Consensus 603 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~--~d----- 675 (882)
++.|. .. .--..-.|+|.|.-++.-+ -|||++|.++++....- .-..+.|...|..+...- .|
T Consensus 1260 Ih~FD--~f-t~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dqc~VtFNstG~VmYa~~~~~d~~sdv 1329 (1516)
T KOG1832|consen 1260 IHRFD--QF-TDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQCAVTFNSTGDVMYAMLNIEDVMSDV 1329 (1516)
T ss_pred Hhhhh--hh-eecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cceEEEeccCccchhhhhhhhhhhhhh
Confidence 88775 22 2223346999999998876 48999999888776532 234677888887665332 00
Q ss_pred ----------CeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEecccc
Q 047837 676 ----------GLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRMDSVN 717 (882)
Q Consensus 676 ----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 717 (882)
...|-+|..+-..+.++.....+..++-++.+.+++.+...+
T Consensus 1330 h~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1330 HTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred cccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence 134455555556666666666666777777777776665443
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.7e-07 Score=62.43 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=37.3
Q ss_pred CeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 644 GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 644 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
|+++..+.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478899999999999999999999999999999999997
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=2.1e-07 Score=89.24 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=118.3
Q ss_pred EEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceE
Q 047837 493 ASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVY 572 (882)
Q Consensus 493 ~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 572 (882)
++.+.+..|.+-|+.++ ....+. ..+.|.++.|...++.+..|+..|.|..+|++........ ....+-|...|+
T Consensus 228 fs~G~sqqv~L~nvetg--~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~--~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG--HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW--CAQRLYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecc--cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc--ceEEEEcCcchh
Confidence 55566677889998876 233343 5678999999988999999999999999999865322111 223345667888
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEEccCCce---EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047837 573 DMDIDP-TMEVVITVGQDKKINSFSIAAGKL---IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVA 648 (882)
Q Consensus 573 ~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~ 648 (882)
++..-. ++.+|++.+.+|+|++||++--++ ++++..|.......-+-..+....++++++|...|||.++.|.++.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 888776 788999999999999999987776 8888833333334445566777888899999999999999999998
Q ss_pred EEccC
Q 047837 649 KAMGH 653 (882)
Q Consensus 649 ~~~~h 653 (882)
+++..
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 87643
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=1.4e-05 Score=79.86 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=132.9
Q ss_pred CCeEEEEECCCceeeEEeeccccceeEEE--ECCCCCEEEEE-c-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCC
Q 047837 67 QPAVLVWDCANLAFISELKGHLYGVECIA--FSPDGEHLVTV-G-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDA 142 (882)
Q Consensus 67 d~~I~vwd~~t~~~~~~l~~h~~~V~~la--fspdg~~Las~-~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~ 142 (882)
+++|..||..+|+.+....- ........ ..+++.+|+++ . +.|+.||..+|+.+.+..... .+.......++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG---PISGAPVVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS---CGGSGEEEETT
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc---cccceeeeccc
Confidence 67899999999999988753 11122222 33355555555 4 999999999999999888643 22222234456
Q ss_pred CEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEcc
Q 047837 143 KFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTD 222 (882)
Q Consensus 143 ~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 222 (882)
..++...++.+..+|..+++..-...... ....
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~-------~~~~---------------------------------------- 110 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTS-------SPPA---------------------------------------- 110 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-S-------SCTC----------------------------------------
T ss_pred ccccccceeeeEecccCCcceeeeecccc-------cccc----------------------------------------
Confidence 66666667889999988887611100000 0000
Q ss_pred CceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhcc
Q 047837 223 AGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATEL 302 (882)
Q Consensus 223 ~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (882)
..........++..++++..++.|..+|+++|+.+.......+.. ..+..
T Consensus 111 -------------------~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~---------- 160 (238)
T PF13360_consen 111 -------------------GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG-SSPIS---------- 160 (238)
T ss_dssp -------------------STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S-S--EE----------
T ss_pred -------------------ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC-Cccee----------
Confidence 000122333347888999889999999999998876664311110 00000
Q ss_pred ccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 303 YFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 303 ~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
.......-....++.++++..++.+..+|+.+++.... .. ...+ ..+ .. ..
T Consensus 161 ------~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~---~~--~~~~----------------~~~-~~-~~ 211 (238)
T PF13360_consen 161 ------SFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS---KP--ISGI----------------YSL-PS-VD 211 (238)
T ss_dssp ------EETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE---EC--SS-E----------------CEC-EE-CC
T ss_pred ------eecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE---ec--CCCc----------------cCC-ce-ee
Confidence 00011122222355777777777544448877652210 00 0001 110 11 45
Q ss_pred CcEEEEeeCCCcEEEEecCCCceee
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELS 407 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~ 407 (882)
+..++.++.++.|..||+.+++...
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 6677777799999999999998764
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=7.1e-05 Score=74.79 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=119.2
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
.+++++.++.+..||..++ +.+-.... ...+.... ..++..++.++.++.+..+|..+++...+......... ..
T Consensus 38 ~v~~~~~~~~l~~~d~~tG-~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~ 112 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTG-KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GV 112 (238)
T ss_dssp EEEEEETTSEEEEEETTTS-EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--ST
T ss_pred EEEEEcCCCEEEEEECCCC-CEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccc--cc
Confidence 5777788999999999887 44444332 11111111 22556777777888999999998887776422211111 11
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCC--------cEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGD--------PMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~--------v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
........++..++.+..++.|..+|+++|+.+........... +..-....++ .+..+..++.+.-+|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 22223333378888888899999999999999988873221111 1122222345 66667677754444999
Q ss_pred CCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 047837 643 SGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 643 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
+++.+-... ...+..+ ...++..|+.++.++.+..||+.+++..
T Consensus 192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 999764333 2333332 4567788888889999999999887643
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=3.9e-07 Score=84.04 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=106.4
Q ss_pred eEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce-eeeccceecccCCceEEEEEecCCCEEEEEe---
Q 047837 512 LIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY-KISRRHQQLASQGTVYDMDIDPTMEVVITVG--- 587 (882)
Q Consensus 512 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--- 587 (882)
....+..|+++-.+-+.+--+..++++..||.+.+++.+...... ++...+. .-.+..+...++.+.++.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~------~~as~~~~~~~~~i~s~~~g~ 154 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHS------GSASRKICRHGNSILSGGCGN 154 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccc------cccccceeecccEEecCCcce
Confidence 344444555444444444467789999999999999987421111 1111111 111222233344444432
Q ss_pred --CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEEccCCeE-EEEEccCCCCeEEEEEC
Q 047837 588 --QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPS-GSYLVCSYSNKSICLYDFISGEM-VAKAMGHGEVITGVTFL 663 (882)
Q Consensus 588 --~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~s 663 (882)
.-+..+.|+++..+.+..-. .....+++++-+|. ..++++|+.||.+.+||.+.... ...+..|..++..+-|+
T Consensus 155 ~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH 232 (319)
T KOG4714|consen 155 WNAQDNFYANTLDPIKTLIPSK--KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH 232 (319)
T ss_pred Eeeccceeeecccccccccccc--cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc
Confidence 12345666665433322222 23344999999994 56778899999999999998743 44567899999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCC
Q 047837 664 P-DCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 664 ~-d~~~l~s~~~dg~i~vwd~~~ 685 (882)
| ++..|++++.||.+-.||-.+
T Consensus 233 pk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 233 PKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCCchheeEecCCCcEEEEcCCC
Confidence 8 578999999999999999875
No 312
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.51 E-value=0.00082 Score=67.15 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=116.4
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCC-ceEEEEEe
Q 047837 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQG-TVYDMDID 577 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 577 (882)
..|.|-|+..+ +.+.++.-.. ...+ +-...+.+.+.+.||.+.-..+............ ....... ....-++.
T Consensus 118 ~SVtVVDl~~~-kvv~ei~~PG--C~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~-~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 118 TSVTVVDLAAK-KVVGEIDTPG--CWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK-VFDPDDDPLFEHPAYS 192 (342)
T ss_dssp EEEEEEETTTT-EEEEEEEGTS--EEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE-ESSTTTS-B-S--EEE
T ss_pred CeEEEEECCCC-ceeeeecCCC--EEEE-EecCCCceEEEecCCceEEEEECCCCCEeEeecc-ccCCCCcccccccceE
Confidence 45777888765 5555544221 1222 2113356888899999999888855444322111 1111112 23344556
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceEE--EEEec--c------CCCCcEEEEECCCCCEEEEEeC---CC-------cEE
Q 047837 578 PTMEVVITVGQDKKINSFSIAAGKLIR--SFKQA--K------DFGDPMKVTVDPSGSYLVCSYS---NK-------SIC 637 (882)
Q Consensus 578 p~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~--~------~~~~v~~~~~spdg~~l~~~~~---dg-------~i~ 637 (882)
..+..++-.+.+|.|+--|+....... .+... . -.+.-.-+++++....|.+--. ++ .|-
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 666556657889999998887554322 22100 0 1233455888876655544321 11 688
Q ss_pred EEEccCCeEEEEEccCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCCCCCCcccCCCCCcccEEEe
Q 047837 638 LYDFISGEMVAKAMGHGEVITGVTFLPDCK-HIVSVG-GDGLQRVKEKYGILPPRNFAQPAALSPIIFC 704 (882)
Q Consensus 638 iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s 704 (882)
++|+.+++.+.++.. ..++.+|..+.|.+ +|++.+ .++.+.+||..+++..+.+..-.....++++
T Consensus 273 v~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~~~ 340 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLILT 340 (342)
T ss_dssp EEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EEEE
T ss_pred EEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEEEe
Confidence 889999999999873 34688999999887 665554 6899999999999988887766665555543
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=1.7e-05 Score=85.36 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=83.8
Q ss_pred CCCCccccCCCCCe-EEEee---ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC
Q 047837 2 KPNHNIKKPDSSSK-CAYVA---GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN 77 (882)
Q Consensus 2 ~~~~~~~~pd~~~~-~~~~~---~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t 77 (882)
++.-..|||.-.-. +++++ |+.|.||- ++|+..+..+ .|-.+++++|+|..-.||.|.. -|.+.+|...+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---~P~hatSLCWHpe~~vLa~gwe--~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT---YPVHATSLCWHPEEFVLAQGWE--MGVSDVQKTNT 90 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc---cceehhhhccChHHHHHhhccc--cceeEEEecCC
Confidence 35567789986522 23332 67888886 5565443321 1134678999999999999955 78899999988
Q ss_pred ceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCc
Q 047837 78 LAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRS 117 (882)
Q Consensus 78 ~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~ 117 (882)
.+.-.....|..+|..+.||++|..|++++ |.|.+|...-
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 887666667999999999999999999999 9999998763
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=8.7e-08 Score=102.69 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=161.1
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
.||.=..+..+..|+..-+|++|+...+ .|+.|+..|.|++|++.++ ........|..+|+.+.-+
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~-------------hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTN-------------HLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPS 1152 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCc-------------eEEeeeccceEEEEEccCc-ccccccccccccccccccc
Confidence 3343334455677888999999999888 9999999999999999998 6677788999999999999
Q ss_pred cCCCEEEEEeCCC--eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 530 CNGRKILSCSADR--SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 530 ~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
.||..+++.+.-. ...+|++...... .|. ...-.++.|+.....-+.|+......+||+.++..+.++-
T Consensus 1153 ~dgs~~Ltsss~S~PlsaLW~~~s~~~~-----~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASSTGGP-----RHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred CCcceeeeeccccCchHHHhccccccCc-----ccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 9999887655433 4678998743222 222 1345678888776666666666789999999998877743
Q ss_pred ec--cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 608 QA--KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 608 ~~--~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.. +....-+...|+|+..++. .|| .+||++..+.++.|...+..+ .=.|+|.|.-++.-+. |||+++
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred CcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHH
Confidence 11 1222336788999988776 355 689999888888776554222 3359999999988774 999998
Q ss_pred CCCCcccCCCCCcccEEEecCCC
Q 047837 686 ILPPRNFAQPAALSPIIFCEEED 708 (882)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~s~~~~ 708 (882)
.+.+.....-. ..++.|...++
T Consensus 1293 F~lLh~VP~Ld-qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-QCAVTFNSTGD 1314 (1516)
T ss_pred HHHHhcCcccc-ceEEEeccCcc
Confidence 87776543322 23455555554
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.1e-06 Score=87.43 Aligned_cols=197 Identities=13% Similarity=0.083 Sum_probs=140.1
Q ss_pred EEEEEcCCCcEEEEEcCC--CceeEEEeecCCCCEEEEEEccCCCEEEEEeC-CCeEEEEeCccCccceeeeccceeccc
Q 047837 491 FLASGGRDRTIHLYDVKR--NFDLIESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
++.+++.||.++.|.-.. +.+.+..+..|...|.+++.+.++..+++.+. |..++++|+..-....-+.....
T Consensus 22 fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l---- 97 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL---- 97 (558)
T ss_pred eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC----
Confidence 899999999999998654 33445566678899999999999999999777 99999999986543322211110
Q ss_pred CCceEEEEEecCCC--EEEEE-eCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC-
Q 047837 568 QGTVYDMDIDPTME--VVITV-GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS- 643 (882)
Q Consensus 568 ~~~v~~~~~sp~~~--~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~- 643 (882)
.+. .++..++... .+++. -.++.+.++|-....+...+...-|..+|..+.+.+-+..+++....|.|.-|..+.
T Consensus 98 Pg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 98 PGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 011 1222233211 33333 357899999977554333333347899999999999999999999999999999862
Q ss_pred -----CeEEEEE---------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 644 -----GEMVAKA---------MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 644 -----~~~~~~~---------~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
.+....+ .......+++.|+|+|..+.+-+.|..|++++..++...+.+
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 2121111 223457789999999999999999999999999876655444
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.35 E-value=1.3e-06 Score=58.18 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=36.2
Q ss_pred CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 600 GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 600 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
|+++.++. +|...|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45777887 9999999999999999999999999999997
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.34 E-value=0.00017 Score=77.87 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=96.4
Q ss_pred EccCCCEEEEE-eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe-------------------
Q 047837 528 FTCNGRKILSC-SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG------------------- 587 (882)
Q Consensus 528 ~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------------- 587 (882)
++|||+.+... -..+.+.+.|..+.+...++.-. +....++++|+|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~ 272 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW 272 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-------CCcccceECCCCCEEEEeccCcccCcceeeeccccCce
Confidence 34566555322 23456777777654333332211 2334567777777766654
Q ss_pred ---------------------CCCcEEEEEccC-----CceEEEEEeccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEE
Q 047837 588 ---------------------QDKKINSFSIAA-----GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY-SNKSICLYD 640 (882)
Q Consensus 588 ---------------------~d~~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~i~iwd 640 (882)
.++.|.+.|.++ .+.+..+. -...+..+.++|||+++++++ .+.+|.|.|
T Consensus 273 ~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 273 VVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred EEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 224577777776 34444443 456778899999999987665 488999999
Q ss_pred ccCCeE------------EEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 641 FISGEM------------VAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 641 ~~~~~~------------~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
+.+.+. +.+..- ...-...+|.++|....|...|..|-.|++..
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 987552 444433 23345678999999888889999999999975
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.8e-05 Score=85.10 Aligned_cols=172 Identities=13% Similarity=0.166 Sum_probs=124.7
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
+++.|..+|.|++++.... . .....|... .-+|.++++|+.||+|.|-.+-+.+...+.... .+
T Consensus 51 ~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-------rp 114 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-------RP 114 (846)
T ss_pred eeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC-------Cc
Confidence 8999999999999998754 2 344445544 558999999999999999988877665544332 48
Q ss_pred eEEEEEecC-----CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe
Q 047837 571 VYDMDIDPT-----MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 571 v~~~~~sp~-----~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~ 645 (882)
+.+++++|+ .+.+++|+.-| +.++.-.=-........+...+.|.++.|. |.++|-++.+| |++||+.+++
T Consensus 115 iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 115 IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence 999999998 56889999888 777753311111111223677899999997 88999988776 9999999999
Q ss_pred EEEEEccCCCCeE------EEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 646 MVAKAMGHGEVIT------GVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 646 ~~~~~~~h~~~v~------~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.+..++.....++ .+.|.++. .|+.|-. .+|+|..++
T Consensus 191 ~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 191 RLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSIK 233 (846)
T ss_pred eeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEEe
Confidence 8887765434333 46776654 4554443 578888887
No 319
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=9.6e-05 Score=69.84 Aligned_cols=144 Identities=19% Similarity=0.210 Sum_probs=103.5
Q ss_pred CccccCCCCCeEEEee--ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC---CCeEEEEECCCc-
Q 047837 5 HNIKKPDSSSKCAYVA--GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP---QPAVLVWDCANL- 78 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~--~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~---d~~I~vwd~~t~- 78 (882)
+++|||-....++|.- |....++|.+..++..++..-+...-.-.=.|||||++|+....+. .|.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 5889999775666654 5688899998877665543222101122237999999999886543 368999998743
Q ss_pred eeeEEeeccccceeEEEECCCCCEEEEEcC--------------------EEEEEEcCcceeeeeeecC--CcccceeEE
Q 047837 79 AFISELKGHLYGVECIAFSPDGEHLVTVGG--------------------YIYLWNWRSAMLVMKLKAN--SSCSAITSA 136 (882)
Q Consensus 79 ~~~~~l~~h~~~V~~lafspdg~~Las~~~--------------------~i~iWd~~~g~~~~~~~~~--~~~~~v~~l 136 (882)
+.+..+..|.-.-..|.+.+||+.|+.+.| .+.+-|..+|+++.+...+ .+...|..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 566778888888899999999999998773 3566677778877665544 344678888
Q ss_pred EEccCCCEEEEE
Q 047837 137 CFSSDAKFIVTA 148 (882)
Q Consensus 137 ~fs~d~~~l~~~ 148 (882)
+..+||+.++.+
T Consensus 232 d~g~dgtvwfgc 243 (366)
T COG3490 232 DIGRDGTVWFGC 243 (366)
T ss_pred eeCCCCcEEEEE
Confidence 888888877765
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.9e-05 Score=73.32 Aligned_cols=247 Identities=13% Similarity=0.125 Sum_probs=146.7
Q ss_pred CCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 366 ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 366 ~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
..+|...|..++|+|....++..++.+.+|++.|+++......
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss------------------------------------- 231 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS------------------------------------- 231 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------------------------
Confidence 4567888999999966666899999999999999998654432
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec--CCCCE
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD--HSAAV 523 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--h~~~v 523 (882)
+..+ ..+++++|..+.. ++|..|..+|.|.|||++.....+..+.+ ...+|
T Consensus 232 --------------y~a~-~~~wSC~wDlde~------------h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv 284 (463)
T KOG1645|consen 232 --------------YIAY-NQIWSCCWDLDER------------HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPV 284 (463)
T ss_pred --------------eecc-CCceeeeeccCCc------------ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcc
Confidence 2233 6778888887765 48999999999999999875444433332 22344
Q ss_pred EEEEEc------cCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC-C---cEE
Q 047837 524 TAVKFT------CNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD-K---KIN 593 (882)
Q Consensus 524 ~~~~~s------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~---~v~ 593 (882)
..++.- +.|.+|+....+ +..|++.-....... .......+...+++..+-.+.++..... . +++
T Consensus 285 ~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~---vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r 359 (463)
T KOG1645|consen 285 HKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC---VLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSR 359 (463)
T ss_pred eeecccCccccccccceEEeeehh--hhhhhhhccccCCCc---ccccCCCcceeeeeecCccceEEEEecCCCCCccce
Confidence 444432 234444444433 667776533322211 1122233566667777655554443322 1 111
Q ss_pred ----EEEccCCceEEEEEeccCCC-C-----cE-EEEECCCCCEEE-EEeCCCcEEEEEccCCeEEEEEccCCCCeEEEE
Q 047837 594 ----SFSIAAGKLIRSFKQAKDFG-D-----PM-KVTVDPSGSYLV-CSYSNKSICLYDFISGEMVAKAMGHGEVITGVT 661 (882)
Q Consensus 594 ----iwd~~~~~~~~~~~~~~~~~-~-----v~-~~~~spdg~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 661 (882)
--|-.+|..+...+. .+.+ . -+ .+.-.++..+++ ++.+.+.+.+||..+++.++++. -+.+|..++
T Consensus 360 ~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dic 437 (463)
T KOG1645|consen 360 FILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDIC 437 (463)
T ss_pred eeeeeeccccCceeeeecc-cccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecc
Confidence 112223443333221 1111 1 01 122234556655 55667799999999999999987 458888887
Q ss_pred ECC-C-CCEEEEEeCCCeEEEEeCC
Q 047837 662 FLP-D-CKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 662 ~s~-d-~~~l~s~~~dg~i~vwd~~ 684 (882)
... + +.+|++-. |..++||..+
T Consensus 438 p~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 438 PNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeecCCcchhhhee-cceEEEEecC
Confidence 643 2 34666544 5678887654
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=8.6e-05 Score=80.75 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=134.0
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCC-EEEEEEccCCCEEEEEeCCC-----eEEEEeCccCccc--eeeeccc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAA-VTAVKFTCNGRKILSCSADR-----SLVVRDVVETNSA--YKISRRH 562 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~--~~~~~~~ 562 (882)
.++.|+.+|.|.+++ +..+....++.+... |..+-...+..+|++.+.|+ .+++|+++..... ......|
T Consensus 37 ~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 37 SVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred eEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 799999999988887 444666778877777 55554444446888877765 4999999754211 1111111
Q ss_pred ee-----cccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC--CceEEEEEeccCCCCcEEEEECCCCCE-EEEEeCCC
Q 047837 563 QQ-----LASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA--GKLIRSFKQAKDFGDPMKVTVDPSGSY-LVCSYSNK 634 (882)
Q Consensus 563 ~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~dg 634 (882)
.. .....++.+++++.+-+.+|+|-.||.|..+.-.- .+-.+.--.+....+|+.+++..+++. ++++ ...
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-Tt~ 193 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-TTE 193 (933)
T ss_pred eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-ecc
Confidence 11 12346889999999999999999999999986321 111122222356789999999999887 3333 345
Q ss_pred cEEEEEccCCeE-EEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccC
Q 047837 635 SICLYDFISGEM-VAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFA 693 (882)
Q Consensus 635 ~i~iwd~~~~~~-~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 693 (882)
.|.+|.+....+ +..+..|...+.+..|++....++.++ +.-+.+||..+..+-..+.
T Consensus 194 ~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 194 QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 799999874332 445777888999999987665455444 3578999988665544443
No 322
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.30 E-value=0.00032 Score=73.91 Aligned_cols=280 Identities=16% Similarity=0.202 Sum_probs=140.7
Q ss_pred CcceeeeccCCCcEEEEeeCCCcEEEEecCCCceee-ecccCCccceeeecC----CcceEeeeeeeeeeeeeeccccCe
Q 047837 372 SVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELS-KDVLGHESLNIEPMS----TAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 372 ~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.|+.+.|. ++...|+.+...|.|.+|.....+... +.........+.+.. ...+..... .....-..++
T Consensus 3 ~v~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~-----r~~~~~~~gf 76 (395)
T PF08596_consen 3 SVTHVSFA-PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISD-----RAPPSLKEGF 76 (395)
T ss_dssp -EEEEEEE-TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GG-----G--TT-SEEE
T ss_pred eEEEEEec-CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehh-----hCCccccccc
Confidence 36667777 666778889999999999887654332 111000000000000 000000000 0000000011
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE--eec------
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES--IDD------ 518 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~--~~~------ 518 (882)
.- ...+....++|++++.+.-| ++|.|..+|.+.|.|++.. ..+.. +..
T Consensus 77 ~P--------~~l~~~~~g~vtal~~S~iG--------------Fvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~ 133 (395)
T PF08596_consen 77 LP--------LTLLDAKQGPVTALKNSDIG--------------FVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKS 133 (395)
T ss_dssp EE--------EEEE---S-SEEEEEE-BTS--------------EEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS
T ss_pred Cc--------hhheeccCCcEeEEecCCCc--------------EEEEEecCCcEEEEECCCC-eEEeeccccccccccc
Confidence 10 13455668999999998776 8999999999999999754 44433 112
Q ss_pred CCCCEEEEEEcc-----CC---CEEEEEeCCCeEEEEeCcc-CccceeeeccceecccCCceEEEE-EecC---------
Q 047837 519 HSAAVTAVKFTC-----NG---RKILSCSADRSLVVRDVVE-TNSAYKISRRHQQLASQGTVYDMD-IDPT--------- 579 (882)
Q Consensus 519 h~~~v~~~~~s~-----~~---~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~sp~--------- 579 (882)
....|+++.|+- |+ -.|++|+..|.+.+|.+.. ...............+.++|..+. |+.+
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~ 213 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATI 213 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence 234688888863 33 4688899999999998863 222222222222223344555444 3221
Q ss_pred -----------CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEE-----CCCCCEEEEEeCCCcEEEEEccC
Q 047837 580 -----------MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTV-----DPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 580 -----------~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~-----spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
-..++....+..++++...+.+...+.. ........+++ ...+..|++-..+|.|++|.+..
T Consensus 214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp HHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred hHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 1224455567889999999888766654 22222333444 23567788889999999999999
Q ss_pred CeEEEEEccCC----CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 644 GEMVAKAMGHG----EVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 644 ~~~~~~~~~h~----~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
-+.+..+.-+. ..+....|+++|+.++-.+.. .+.++.+
T Consensus 292 Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 292 LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred chHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 88888776532 245567789999987766543 3444443
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=0.0034 Score=58.80 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=71.6
Q ss_pred EECCCCCEE-EEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC-CCcEEEEEcccCccceecccc
Q 047837 95 AFSPDGEHL-VTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-KKHLKFWTIGSSATARTRLNK 170 (882)
Q Consensus 95 afspdg~~L-as~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~ 170 (882)
...+|.+.+ +.++ +.++--|..+|+++.+.... .+|.+-+.- =|++++.+. .+.+.+.+..++.......
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~-- 90 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV-- 90 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee--
Confidence 344455544 4444 88888899999988765544 455544433 345555554 4789988888876511110
Q ss_pred CccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEe
Q 047837 171 GTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALS 250 (882)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s 250 (882)
.-+.+. ......
T Consensus 91 ---------------------------------------------------~~~~vk-----------------~~a~~d 102 (354)
T KOG4649|consen 91 ---------------------------------------------------ILETVK-----------------VRAQCD 102 (354)
T ss_pred ---------------------------------------------------ehhhhc-----------------cceEEc
Confidence 000000 234567
Q ss_pred cCCCEEEEEecCCeEEeeecccceeccccc
Q 047837 251 ASSKLIACACSNGAVHLFDIQSLKHAGTLH 280 (882)
Q Consensus 251 ~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 280 (882)
+++.++.+|+.|++....|..+..++.+.+
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEecc
Confidence 889999999999999999998877776543
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.23 E-value=0.00086 Score=71.01 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=50.5
Q ss_pred CCCCCEEEEEc-----------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCcc
Q 047837 97 SPDGEHLVTVG-----------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSAT 163 (882)
Q Consensus 97 spdg~~Las~~-----------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~ 163 (882)
|||+++++... +.+.|+|+.+++....... . ..+....|+|||+.++...++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~--~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P--PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E--TTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c--cccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence 68999888733 7899999999876654443 2 789999999999999999999999998877644
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.23 E-value=0.0019 Score=68.40 Aligned_cols=105 Identities=14% Similarity=0.227 Sum_probs=69.7
Q ss_pred cCCCCEEEEeec-------CCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeee
Q 047837 53 SRDGRYVAAGES-------GPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKL 124 (882)
Q Consensus 53 spdg~~la~g~~-------~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~ 124 (882)
|||+++++.... ...+.+.|||+++++....... ...+....|||||++||... +.|.+++..+++..+-.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeEEec
Confidence 789998887431 1145799999999876554433 77899999999999999999 99999998888544322
Q ss_pred ecCCc---------------ccceeEEEEccCCCEEEEEC--CCcEEEEEc
Q 047837 125 KANSS---------------CSAITSACFSSDAKFIVTAG--KKHLKFWTI 158 (882)
Q Consensus 125 ~~~~~---------------~~~v~~l~fs~d~~~l~~~~--~~~i~iwd~ 158 (882)
..... .+.-.++.||||+++|+... +..|+.+.+
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 21100 12346788999999999864 233444433
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.21 E-value=0.024 Score=65.13 Aligned_cols=287 Identities=12% Similarity=0.112 Sum_probs=149.3
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECC-Cce---eeEEe--eccccceeEEEECCCCCEEEEEc--CEEEEEEcC
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCA-NLA---FISEL--KGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWR 116 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~-t~~---~~~~l--~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~ 116 (882)
+.-.+..++|.-..+|++...+...+.++.++ .++ ....+ ....+.|.++.|.-|+.-++.+. |.|.+-|.+
T Consensus 19 ~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~e 98 (1265)
T KOG1920|consen 19 GNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDPE 98 (1265)
T ss_pred CchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEccc
Confidence 33456666777666776633222234444443 222 11111 12336899999999887776666 999999988
Q ss_pred cceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEe
Q 047837 117 SAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSV 195 (882)
Q Consensus 117 ~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 195 (882)
+......-... ..|.+++|+||+++++.... +++.+-+- +-..+..+.. ........+.++.++.....-...
T Consensus 99 t~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~L--~~d~~~~sk~v~VGwGrkeTqfrg 172 (1265)
T KOG1920|consen 99 TLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKPL--DADDERKSKFVNVGWGRKETQFRG 172 (1265)
T ss_pred ccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcccc--ccccccccccceecccccceeeec
Confidence 77543322222 78999999999999998877 45544332 1111000000 111112222332222221111000
Q ss_pred eecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEE-----ecCCeEEeeec
Q 047837 196 ISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACA-----CSNGAVHLFDI 270 (882)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-----~~dg~I~vwd~ 270 (882)
.+.-- .+.+ .+..-+..+.+ .++.. -..++|--||+++|+. .....|++||.
T Consensus 173 s~gr~---------~~~~--~~~~ek~~~~~-~~~~~-----------~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr 229 (1265)
T KOG1920|consen 173 SEGRQ---------AARQ--KIEKEKALEQI-EQDDH-----------KTSISWRGDGEYFAVSFVESETGTRKIRVYDR 229 (1265)
T ss_pred chhhh---------cccc--cccccccccch-hhccC-----------CceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence 00000 0000 00000000100 01111 1568999999999983 33389999998
Q ss_pred ccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeC----CceEEEEEcccccccce
Q 047837 271 QSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYG----DHSLYVWDIHDVNEATR 346 (882)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~----d~~i~iwd~~~~~~~~~ 346 (882)
+ |..-.. . .+...--.+++|-|.|.++++-. |+.|.++.-.....
T Consensus 230 E-g~Lns~-s--------------------------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h--- 278 (1265)
T KOG1920|consen 230 E-GALNST-S--------------------------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH--- 278 (1265)
T ss_pred c-chhhcc-c--------------------------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc---
Confidence 7 332111 0 01111122689999998877633 66788887654321
Q ss_pred eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE---eeCCCcEEEEecCCCce
Q 047837 347 CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST---CSADGTIRLWDLALQSE 405 (882)
Q Consensus 347 ~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t---~~~dg~i~vwd~~~~~~ 405 (882)
..- .+. .......|..++|+ .++..|++ ......|++|-+.+-.-
T Consensus 279 -------g~f--~l~----~p~de~~ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 279 -------GEF--VLP----FPLDEKEVEELAWN-SNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred -------ccc--ccC----Ccccccchheeeec-CCCCceeeeecccccceEEEEEecCeEE
Confidence 110 011 11223348889998 78888887 55555699999876543
No 327
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.21 E-value=0.0018 Score=66.07 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=85.7
Q ss_pred CCccccCCCCCeEEEeec----eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce
Q 047837 4 NHNIKKPDSSSKCAYVAG----CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA 79 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~----~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~ 79 (882)
...+|.+||+ +++|.++ ..+.+.|+++++..++-.+-. .......++|+.+.++.... ...|+--|+++++
T Consensus 39 ~~~~ft~dG~-kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~--~~~l~~vdL~T~e 113 (386)
T PF14583_consen 39 YQNCFTDDGR-KLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKN--GRSLRRVDLDTLE 113 (386)
T ss_dssp TS--B-TTS--EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEET--TTEEEEEETTT--
T ss_pred cCCCcCCCCC-EEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEEC--CCeEEEEECCcCc
Confidence 3467889988 4555443 489999999999876644322 22334667788888765532 4589999999988
Q ss_pred eeEEeeccccceeEEEE--CCCCCEEEEEc------------------------CEEEEEEcCcceeeeeeecCCcccce
Q 047837 80 FISELKGHLYGVECIAF--SPDGEHLVTVG------------------------GYIYLWNWRSAMLVMKLKANSSCSAI 133 (882)
Q Consensus 80 ~~~~l~~h~~~V~~laf--spdg~~Las~~------------------------~~i~iWd~~~g~~~~~~~~~~~~~~v 133 (882)
......-....+-...| +.|+..++-.- ..|.--|+.+|+....+... ..+
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~---~wl 190 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT---DWL 190 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES---S-E
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC---ccc
Confidence 75555555665554555 45777765432 25777788888766555544 788
Q ss_pred eEEEEcc-CCCEEEEECCC---c--EEEEEcccC
Q 047837 134 TSACFSS-DAKFIVTAGKK---H--LKFWTIGSS 161 (882)
Q Consensus 134 ~~l~fs~-d~~~l~~~~~~---~--i~iwd~~~~ 161 (882)
..+.|+| |..+|+.|.+| . -+||-+...
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 9999999 56677777653 2 377877643
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=0.012 Score=62.39 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=80.8
Q ss_pred EEEEEEcc-CCCEEEEE----eCCCe----EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEE
Q 047837 523 VTAVKFTC-NGRKILSC----SADRS----LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKIN 593 (882)
Q Consensus 523 v~~~~~s~-~~~~l~s~----~~dg~----i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~ 593 (882)
..++.||- +...+.+. +.+|. -.+|++...+ ..+. ..........+.+++++|+.+.++.|+.||.|.
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrv--svtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRV--SVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEE--EEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 35566665 33444432 22332 3456665332 2222 112234457899999999999999999999999
Q ss_pred EEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe
Q 047837 594 SFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 594 iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~ 645 (882)
+||...+..... ...-.++.++|+|+|.++++|+..|.+.+||+.-..
T Consensus 285 LyD~~~~~t~~~----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVTLLA----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCeeeee----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999876643322 234668999999999999999999999999987543
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=3.3e-05 Score=83.23 Aligned_cols=107 Identities=13% Similarity=0.244 Sum_probs=81.3
Q ss_pred eEEEECCCCCEEEEEc------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccc
Q 047837 92 ECIAFSPDGEHLVTVG------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATA 164 (882)
Q Consensus 92 ~~lafspdg~~Las~~------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~ 164 (882)
+-..|+|...++|.++ |.|-||- ++|++-..+..+ -.+++++|+|..-.|+.+-. |.+.+|.....+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~- 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET- 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---eehhhhccChHHHHHhhccccceeEEEecCCcee-
Confidence 4467889888888876 8899985 788876666554 46788999999888887765 8899998766543
Q ss_pred eeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceee
Q 047837 165 RTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVK 244 (882)
Q Consensus 165 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~ 244 (882)
......|..++
T Consensus 94 -------htv~~th~a~i-------------------------------------------------------------- 104 (1416)
T KOG3617|consen 94 -------HTVVETHPAPI-------------------------------------------------------------- 104 (1416)
T ss_pred -------eeeccCCCCCc--------------------------------------------------------------
Confidence 11112233332
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeeccc
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQS 272 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 272 (882)
..+.||++|..|.++..-|.|.+|....
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 7789999999999999999999999874
No 330
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.16 E-value=5.5e-05 Score=82.55 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=106.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC---------CCeEEEEeCccCccceeeecc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA---------DRSLVVRDVVETNSAYKISRR 561 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~ 561 (882)
++.+|...|+|.+-|..+. +.++++..|++.|.++.. .|+.|++++. |.-|+|||++.-+....+...
T Consensus 189 ~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~ 265 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP 265 (1118)
T ss_pred EEEeecccceEEeecCCcC-ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence 8999999999999999876 899999999999998776 7889999876 456899999854433222111
Q ss_pred ceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCC--ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 047837 562 HQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAG--KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICL 638 (882)
Q Consensus 562 ~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~i 638 (882)
. .-.-+.|.|.- ..+++++..|...+-|..+. -....+........+..+.+|++|+.||.|..+|.|.+
T Consensus 266 ~-------~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 266 Y-------GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred c-------CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 1 12345677754 47888899999999994432 12333333355566999999999999999999999999
Q ss_pred EE
Q 047837 639 YD 640 (882)
Q Consensus 639 wd 640 (882)
|-
T Consensus 339 wa 340 (1118)
T KOG1275|consen 339 WA 340 (1118)
T ss_pred ec
Confidence 98
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.15 E-value=0.0024 Score=70.81 Aligned_cols=163 Identities=12% Similarity=0.144 Sum_probs=100.5
Q ss_pred EEEccCCCEEEEEeCCC------------------eEEEEeCccCccceeeeccceec----ccCC-ceEEEEEecCCC-
Q 047837 526 VKFTCNGRKILSCSADR------------------SLVVRDVVETNSAYKISRRHQQL----ASQG-TVYDMDIDPTME- 581 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~----~~~~-~v~~~~~sp~~~- 581 (882)
.++.+.+..++.++.++ .|.-+|..+++...+........ .... .+..+. .-++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKP 300 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCe
Confidence 34455566777777665 68888999888777654322100 0000 111111 11333
Q ss_pred --EEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEE------------------eCCCcEEEEEc
Q 047837 582 --VVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS------------------YSNKSICLYDF 641 (882)
Q Consensus 582 --~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------------------~~dg~i~iwd~ 641 (882)
.++.++.+|.+...|.++|+.+...... ...++.+| + .+..+ ..+|.+.-.|+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 6778888999999999999998877521 11233444 2 22221 23678888999
Q ss_pred cCCeEEEEEccCC--------CCe--EEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCc
Q 047837 642 ISGEMVAKAMGHG--------EVI--TGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAAL 698 (882)
Q Consensus 642 ~~~~~~~~~~~h~--------~~v--~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 698 (882)
.+|+.+-+..... .+. ..+.. .+..|+.++.||.++.+|..+++.+..+..+..+
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCc
Confidence 9998776654320 111 11222 4568888999999999999999988777665544
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=4e-05 Score=83.53 Aligned_cols=133 Identities=14% Similarity=0.212 Sum_probs=99.3
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEE
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECI 94 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~l 94 (882)
.++..-.+.++.+|+++.+..+...-.. .+|+- +-.+++++.+|.. .|+|.+-|..+.+.++++..|++.|..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~i--mR~Nnr~lf~G~t--~G~V~LrD~~s~~~iht~~aHs~siSD- 222 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTI--MRYNNRNLFCGDT--RGTVFLRDPNSFETIHTFDAHSGSISD- 222 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccC--CceEE--EEecCcEEEeecc--cceEEeecCCcCceeeeeeccccceee-
Confidence 3444445578889999888776653332 34444 4457899999955 889999999999999999999998865
Q ss_pred EECCCCCEEEEEc-----------CEEEEEEcCcceeeeeeecCCcccceeEEEEccC--CCEEEEECCCcEEEEEc
Q 047837 95 AFSPDGEHLVTVG-----------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSD--AKFIVTAGKKHLKFWTI 158 (882)
Q Consensus 95 afspdg~~Las~~-----------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d--~~~l~~~~~~~i~iwd~ 158 (882)
|+-.|.+|+++| ..|+|||+..-+.+.-+..+. ...-+.|.|. .+.+++...|...+-|.
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---CchhhhhcccccceEEEEecccceeeccc
Confidence 555788999998 358999999998888777764 3366788883 44555555588888774
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.11 E-value=0.0009 Score=71.57 Aligned_cols=229 Identities=14% Similarity=0.198 Sum_probs=115.4
Q ss_pred CCCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee
Q 047837 2 KPNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI 81 (882)
Q Consensus 2 ~~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~ 81 (882)
.|..+.++|.|. .++.+.++.-.||.....+-... |. -..++|++.++ .|+-.. ..+|.|+.--+.+..
T Consensus 34 ~p~~ls~npngr-~v~V~g~geY~iyt~~~~r~k~~--G~-----g~~~vw~~~n~-yAv~~~--~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNPNGR-FVLVCGDGEYEIYTALAWRNKAF--GS-----GLSFVWSSRNR-YAVLES--SSTIKIYKNFKNEVV 102 (443)
T ss_dssp --SEEEE-TTSS-EEEEEETTEEEEEETTTTEEEEE--EE------SEEEE-TSSE-EEEE-T--TS-EEEEETTEE-TT
T ss_pred CCeeEEECCCCC-EEEEEcCCEEEEEEccCCccccc--Cc-----eeEEEEecCcc-EEEEEC--CCeEEEEEcCccccc
Confidence 477899999987 55556677888888554444333 22 23478888666 555533 668999643343333
Q ss_pred EEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEccc
Q 047837 82 SELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGS 160 (882)
Q Consensus 82 ~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~ 160 (882)
..++.. ..+..|-. |.+|+..+ +.|.+|||++++.++++... +|..+.|++++.+++..++..+.+++.+.
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred eEEcCC-cccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 344321 22333333 88888888 88999999999999999854 48999999999999999999988888754
Q ss_pred CccceeccccCcc-ceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 161 SATARTRLNKGTE-SLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
..... ....+.+ .+..-. .....+.+..|..+-....... +... +...+.|.|..++
T Consensus 175 ~~~~~-~~~~g~e~~f~~~~----------E~~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~~~i~~ld--------- 232 (443)
T PF04053_consen 175 EAVAA-IPEEGVEDAFELIH----------EISERIKSGCWVEDCFIYTTSN-HLKY-LVNGETGIIAHLD--------- 232 (443)
T ss_dssp HHHHH-BTTTB-GGGEEEEE----------EE-S--SEEEEETTEEEEE-TT-EEEE-EETTEEEEEEE-S---------
T ss_pred hhccc-ccccCchhceEEEE----------EecceeEEEEEEcCEEEEEcCC-eEEE-EEcCCcceEEEcC---------
Confidence 41100 0000000 000000 0011234455554422111111 2111 2223333333332
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccc
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSL 273 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 273 (882)
.+..-+.+.+..+.++....++.|..+.+...
T Consensus 233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp --S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred --CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 23355677787788999999999988877643
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.10 E-value=0.0019 Score=68.26 Aligned_cols=267 Identities=14% Similarity=0.154 Sum_probs=134.5
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC--------CceeEEEee
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR--------NFDLIESID 517 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~--------~~~~~~~~~ 517 (882)
+..+.+.++..-+......+.|.-+.|..+............+...--....++.-.+-|+.. ++.+...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 556677777666677777777777777665431100000000000000001112233334332 333444555
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccc--eecccCCceEEEEEec-----CC---CEEEEEe
Q 047837 518 DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRH--QQLASQGTVYDMDIDP-----TM---EVVITVG 587 (882)
Q Consensus 518 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp-----~~---~~l~~~~ 587 (882)
...++|++++.| |=-++|.|..+|.+.|.|++.........-.. ........++++.|+- |+ -.+++|.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 568899999998 55599999999999999998555444422222 1112234677888873 33 3688899
Q ss_pred CCCcEEEEEccC---CceEEEEEe--ccCCCCcEEEE-ECCC-C--------------------CEEEEEeCCCcEEEEE
Q 047837 588 QDKKINSFSIAA---GKLIRSFKQ--AKDFGDPMKVT-VDPS-G--------------------SYLVCSYSNKSICLYD 640 (882)
Q Consensus 588 ~d~~v~iwd~~~---~~~~~~~~~--~~~~~~v~~~~-~spd-g--------------------~~l~~~~~dg~i~iwd 640 (882)
..|.+.+|.+.- +.....+.. ..+.+.+..+. |+.+ | .+++++ .+..++++.
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~ 241 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFK 241 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEe
Confidence 999999998751 222222221 13556666655 4222 1 144444 467899999
Q ss_pred ccCCeEEEEEccCCCCeEEEEEC-----CCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCC-----cccEEEecCCCeE
Q 047837 641 FISGEMVAKAMGHGEVITGVTFL-----PDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAA-----LSPIIFCEEEDQK 710 (882)
Q Consensus 641 ~~~~~~~~~~~~h~~~v~~l~~s-----~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~ 710 (882)
..+.+..+......-....+++- ..+..|+.-..+|.|+++.+.+.+.+.....+.. .....|+.+++..
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 99888776655332333445552 3567788889999999999999888776655432 3456777777655
Q ss_pred EEec
Q 047837 711 CRMD 714 (882)
Q Consensus 711 ~~~~ 714 (882)
....
T Consensus 322 ~~~g 325 (395)
T PF08596_consen 322 YWTG 325 (395)
T ss_dssp EE-S
T ss_pred EEeC
Confidence 4443
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00047 Score=73.68 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=75.5
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee-----eEEee-ccc
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF-----ISELK-GHL 88 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~-----~~~l~-~h~ 88 (882)
..+..+.+.+.+|+-..++.+..-.+-. .+.+..+.+|++..++|.|+. .|.|.|+-++.+.+ +..+. .|.
T Consensus 48 l~~GsS~G~lyl~~R~~~~~~~~~~~~~-~~~~~~~~vs~~e~lvAagt~--~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 48 LAMGSSAGSVYLYNRHTGEMRKLKNEGA-TGITCVRSVSSVEYLVAAGTA--SGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred EEEecccceEEEEecCchhhhcccccCc-cceEEEEEecchhHhhhhhcC--CceEEeehhhccCCCcceeeccccccCC
Confidence 3444456799999988877654432212 267888889999999999965 78999998876432 11121 378
Q ss_pred cceeEEEECCCCCEEEEEc--CEEEEEEcCc
Q 047837 89 YGVECIAFSPDGEHLVTVG--GYIYLWNWRS 117 (882)
Q Consensus 89 ~~V~~lafspdg~~Las~~--~~i~iWd~~~ 117 (882)
..|+|++|++|+..|.+|+ |+|..-.+.+
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEEEEecccccEEeecCCCceEEEEEech
Confidence 8999999999999999999 9999988877
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0054 Score=68.00 Aligned_cols=106 Identities=12% Similarity=0.095 Sum_probs=70.3
Q ss_pred EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE------------------eCCCcEEEE
Q 047837 534 KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV------------------GQDKKINSF 595 (882)
Q Consensus 534 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------------------~~d~~v~iw 595 (882)
.++.++.+|.+...|..+++...+..... ..++.+| ..+..+ ..+|.+.-.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---------cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 57778889999999999888776543221 1123333 222221 245788899
Q ss_pred EccCCceEEEEEeccCC------CCc--EEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc
Q 047837 596 SIAAGKLIRSFKQAKDF------GDP--MKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG 652 (882)
Q Consensus 596 d~~~~~~~~~~~~~~~~------~~v--~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 652 (882)
|+.+|+.+-+.....+. ... ..++. .+.+|++++.||.|+.+|.++|+.+-+++-
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 99999988877632111 111 12222 467888889999999999999999888764
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.04 E-value=0.00036 Score=79.11 Aligned_cols=203 Identities=13% Similarity=0.147 Sum_probs=134.6
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCe
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRS 543 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 543 (882)
++.|.++.|..+.. -++.+..+|.|.+-|..+. .+.....-...|.+++||||+..++..+.+++
T Consensus 68 d~~i~s~~fl~d~~-------------~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-------------SICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred CcceEEEEEecccc-------------eEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcE
Confidence 46788888888776 6888888899999987764 33334445678999999999999999998887
Q ss_pred EEEEeC----ccCccc----------eeee--ccceec----------------------ccCCceEEEEEecCCCEEEE
Q 047837 544 LVVRDV----VETNSA----------YKIS--RRHQQL----------------------ASQGTVYDMDIDPTMEVVIT 585 (882)
Q Consensus 544 i~vwd~----~~~~~~----------~~~~--~~~~~~----------------------~~~~~v~~~~~sp~~~~l~~ 585 (882)
+.+-.- -..... .... +...++ ...+.-..+.|--||+++|+
T Consensus 133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV 212 (1265)
T KOG1920|consen 133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV 212 (1265)
T ss_pred EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence 776432 110000 0000 000000 01122345899999999988
Q ss_pred Ee----CC-CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEe---CCCcEEEEEccCCeEEE----EEccC
Q 047837 586 VG----QD-KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY---SNKSICLYDFISGEMVA----KAMGH 653 (882)
Q Consensus 586 ~~----~d-~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---~dg~i~iwd~~~~~~~~----~~~~h 653 (882)
.. .+ +.|++||-+ |.+-..-. ...+.-.+++|-|.|.++|+-. .|+.|.+|.. +|-... .+...
T Consensus 213 s~~~~~~~~RkirV~drE-g~Lns~se--~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GALNSTSE--PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLD 288 (1265)
T ss_pred EEEeccCCceeEEEeccc-chhhcccC--cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCccc
Confidence 33 23 799999987 54433322 3344556899999999999753 4567999984 443222 23323
Q ss_pred CCCeEEEEECCCCCEEEE---EeCCCeEEEEeCCC
Q 047837 654 GEVITGVTFLPDCKHIVS---VGGDGLQRVKEKYG 685 (882)
Q Consensus 654 ~~~v~~l~~s~d~~~l~s---~~~dg~i~vwd~~~ 685 (882)
...|..++|+.++..|++ ......|++|-+.+
T Consensus 289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 345999999999999998 44555699998875
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.03 E-value=0.0037 Score=61.05 Aligned_cols=212 Identities=11% Similarity=0.191 Sum_probs=111.4
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecc-ccceeEEEECCCCCEEEEEc--CEEEEEEcCcce--
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGH-LYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAM-- 119 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h-~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~-- 119 (882)
..++.++|.||.+.|++.. +..+.|...+. +|+.++++.-. .+....|++..+++++++-. +.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~-d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQ-DEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEE-TTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEE-CCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 5799999999866544444 55888999997 58888886543 35678999999998888775 899999884321
Q ss_pred ----eeeeee--cC-CcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccce
Q 047837 120 ----LVMKLK--AN-SSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESY 191 (882)
Q Consensus 120 ----~~~~~~--~~-~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 191 (882)
....+. .. .+...+..++|++.++.|.++-+ .-..++.+..... .........
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-------~~~~~~~~~------------ 160 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-------GFDLFVSDD------------ 160 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------SS--EEEE-------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-------ccceeeccc------------
Confidence 112222 21 22356999999997666665544 4566666643110 000000000
Q ss_pred EEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCC-CEEEEEecCCeEEeeec
Q 047837 192 FVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASS-KLIACACSNGAVHLFDI 270 (882)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~dg~I~vwd~ 270 (882)
..|.. .........+++++|.. .+++.......|..+|
T Consensus 161 ------~~~~~----------------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d- 199 (248)
T PF06977_consen 161 ------QDLDD----------------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD- 199 (248)
T ss_dssp ------HHHH-----------------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--
T ss_pred ------ccccc----------------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-
Confidence 00000 00111223778888874 4556666777888888
Q ss_pred ccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEE
Q 047837 271 QSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVW 336 (882)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iw 336 (882)
.+|+.+..+..... ...+....+..-.++|.++|++.+.+..+..+++
T Consensus 200 ~~G~~~~~~~L~~g------------------~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 200 RQGRVVSSLSLDRG------------------FHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TT--EEEEEE-STT------------------GGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CCCCEEEEEEeCCc------------------ccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 55665554432211 0011122334558999999999999987766655
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=0.012 Score=62.32 Aligned_cols=113 Identities=19% Similarity=0.138 Sum_probs=81.9
Q ss_pred ceEEEEEec-CCCEEEEE----eCCC----cEEEEEccCCceEEE-EEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 570 TVYDMDIDP-TMEVVITV----GQDK----KINSFSIAAGKLIRS-FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 570 ~v~~~~~sp-~~~~l~~~----~~d~----~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
...++.|+- +...+.+. +.+| ...+|++..++..+. +..-.....+.+++++|+...|+.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345677776 33344433 2334 245777765543221 1112567899999999999999999999999999
Q ss_pred EccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 640 DFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 640 d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
|...+.-. +....-.++.++|+|+|.++++++..|.+.+||+.
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 98776332 22345677899999999999999999999999986
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00039 Score=68.95 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=89.4
Q ss_pred EEEEECCCCceEEEEEecCCCCCeEEEEEcCCCC-EEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCE
Q 047837 24 LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGR-YVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEH 102 (882)
Q Consensus 24 v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~-~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~ 102 (882)
+.+.+..+-+....+.+|. ..|..++|||..+ ++..++. +..|.|.|+++...+.....| ..+++++|.-|...
T Consensus 175 v~~l~~~~fkssq~lp~~g--~~IrdlafSp~~~GLl~~asl--~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEG--SFIRDLAFSPFNEGLLGLASL--GNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhhcccccc--hhhhhhccCccccceeeeecc--CceEEEEecccceeeeheecc-CCceeeeeccCCcc
Confidence 5555555555555666666 7899999999887 6777765 669999999999999988878 88999999998776
Q ss_pred EEEEc---CEEEEEEcCcce-eeeeeecCCcccceeEEEEcc------CCCEEEEECCCcEEEEEccc
Q 047837 103 LVTVG---GYIYLWNWRSAM-LVMKLKANSSCSAITSACFSS------DAKFIVTAGKKHLKFWTIGS 160 (882)
Q Consensus 103 Las~~---~~i~iWd~~~g~-~~~~~~~~~~~~~v~~l~fs~------d~~~l~~~~~~~i~iwd~~~ 160 (882)
.+.+| |.|.|+|+...+ .+..+.......+|..++.-+ .+.+|+. ..-.+.+|++..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~-~lt~l~f~ei~~ 316 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVF-ALTVLQFYEIVF 316 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEe-eehhhhhhhhhc
Confidence 66666 999999997543 222222211224555554433 2333333 333466777643
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.97 E-value=0.0081 Score=58.66 Aligned_cols=204 Identities=15% Similarity=0.173 Sum_probs=117.4
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC-CCCEEEEEEccCCCEEEEEeC
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH-SAAVTAVKFTCNGRKILSCSA 540 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~ 540 (882)
+-...+..++|+|+.. .++++....+.|..++.. + +.++.+.-. ....-.|++..++.++++.-.
T Consensus 19 g~~~e~SGLTy~pd~~------------tLfaV~d~~~~i~els~~-G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er 84 (248)
T PF06977_consen 19 GILDELSGLTYNPDTG------------TLFAVQDEPGEIYELSLD-G-KVLRRIPLDGFGDYEGITYLGNGRYVLSEER 84 (248)
T ss_dssp T--S-EEEEEEETTTT------------EEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred CccCCccccEEcCCCC------------eEEEEECCCCEEEEEcCC-C-CEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence 4455688999998754 277888888888888864 3 555555432 356889999888877777667
Q ss_pred CCeEEEEeCccCccceeeec--cc---eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC---CceEEEEEe----
Q 047837 541 DRSLVVRDVVETNSAYKISR--RH---QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA---GKLIRSFKQ---- 608 (882)
Q Consensus 541 dg~i~vwd~~~~~~~~~~~~--~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~~---- 608 (882)
++.+.++++........... .. ....++..+-.++|+|.++.|+.+-+..-..+|.+.. ...+.....
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 89999999854332211111 01 1112345689999999988888877777777777764 222222111
Q ss_pred --ccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEEccCCeEEEEEccCC---------CCeEEEEECCCCCEEEEEeCCC
Q 047837 609 --AKDFGDPMKVTVDPS-GSYLVCSYSNKSICLYDFISGEMVAKAMGHG---------EVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 609 --~~~~~~v~~~~~spd-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~s~d~~~l~s~~~dg 676 (882)
......+.+++++|. |++++....+..|..+| .+|+++..+.-.. ...-.|+|.++|++.+ .+.-+
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpN 242 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPN 242 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCc
Confidence 123456889999995 56777788888999999 6788776654222 2577899999996555 45555
Q ss_pred eEEEE
Q 047837 677 LQRVK 681 (882)
Q Consensus 677 ~i~vw 681 (882)
..+++
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 54443
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00046 Score=73.55 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=113.6
Q ss_pred EeecCCCCEEEEEEccCCCEEEEEe---CC-CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe-CC
Q 047837 515 SIDDHSAAVTAVKFTCNGRKILSCS---AD-RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QD 589 (882)
Q Consensus 515 ~~~~h~~~v~~~~~s~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d 589 (882)
.+......+..-+|+|+++.++..+ .. ..+.++++.++........ .+.-...+|+|||+.|+.+. .|
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-------~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-------NGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-------CCccCCccCCCCCCEEEEEECCC
Confidence 3333445667778999998876542 22 4589999987765554431 23556678999999776554 55
Q ss_pred C--cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC-CC--cEEEEEccCCeEEEEEccCCCCeEEEEECC
Q 047837 590 K--KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS-NK--SICLYDFISGEMVAKAMGHGEVITGVTFLP 664 (882)
Q Consensus 590 ~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 664 (882)
+ .|.++|+..+...+ +. ...+.-+.-.|+|||++++-.++ .| .|.++|.+.++. ..+....+.-..-.|+|
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt--~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LT--NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCccEEEEcCCCCccee-cc--cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC
Confidence 5 57788888776433 43 23333346789999999886654 33 677778776654 33333333333778999
Q ss_pred CCCEEEEEeCC-Ce--EEEEeCCCCCCCcccCCCCCcccEEEecCCCeE
Q 047837 665 DCKHIVSVGGD-GL--QRVKEKYGILPPRNFAQPAALSPIIFCEEEDQK 710 (882)
Q Consensus 665 d~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 710 (882)
||++|+..+.. |. |.+.|+.+....+.+..........+.+++..+
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMI 384 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceE
Confidence 99999988743 43 556666544433333333333333444444433
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00018 Score=76.58 Aligned_cols=148 Identities=21% Similarity=0.283 Sum_probs=100.7
Q ss_pred ccccCCCCCeEEEe---e-c-eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec-CCCCeEEEEECCCce
Q 047837 6 NIKKPDSSSKCAYV---A-G-CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES-GPQPAVLVWDCANLA 79 (882)
Q Consensus 6 ~~~~pd~~~~~~~~---~-~-~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~-~~d~~I~vwd~~t~~ 79 (882)
..|+|++. .++|. . + ..+.++|+++++....+.. . +.-..-+|||||+.||.... ++...|++.|+.++.
T Consensus 198 p~ws~~~~-~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~--g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 198 PAWSPDGK-KLAYVSFELGGCPRIYYLDLNTGKRPVILNF-N--GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred cccCcCCC-ceEEEEEecCCCceEEEEeccCCccceeecc-C--CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 56788877 44443 2 3 3699999999887766542 2 45567899999999998764 334468888988777
Q ss_pred eeEEeeccccceeEEEECCCCCEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC--CCc
Q 047837 80 FISELKGHLYGVECIAFSPDGEHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG--KKH 152 (882)
Q Consensus 80 ~~~~l~~h~~~V~~lafspdg~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~--~~~ 152 (882)
. ..|..-.+.-+.=.|+|||++|+..+ -.|.+.|++.+.. ..+.... ..-..-.|+|||++++..+ +|.
T Consensus 274 ~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~--~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 274 L-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG--GGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred c-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC--CCCcCccCCCCCCEEEEEeccCCc
Confidence 4 44654444444778999999998877 4677778777665 3333332 2222778999999999887 344
Q ss_pred --EEEEEcccC
Q 047837 153 --LKFWTIGSS 161 (882)
Q Consensus 153 --i~iwd~~~~ 161 (882)
|.+.++.++
T Consensus 350 ~~i~~~~~~~~ 360 (425)
T COG0823 350 WDIDKNDLASG 360 (425)
T ss_pred eeeEEeccCCC
Confidence 444444433
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0007 Score=73.43 Aligned_cols=176 Identities=10% Similarity=0.121 Sum_probs=113.8
Q ss_pred CCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccC---
Q 047837 455 GSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCN--- 531 (882)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~--- 531 (882)
++.+.++.|.+.|.-..+...............+|.++++++.||+|.|..+.+. +....+. ...++.+|+++|+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~-~~~~~~d-f~rpiksial~Pd~~~ 126 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTD-DEITQYD-FKRPIKSIALHPDFSR 126 (846)
T ss_pred cceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCC-ccceeEe-cCCcceeEEeccchhh
Confidence 3455677788777766655442111111111334669999999999999988876 3333333 4568999999997
Q ss_pred --CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec
Q 047837 532 --GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA 609 (882)
Q Consensus 532 --~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 609 (882)
.+.+++|+.-| +.++.-+--+..... ......++|.++.|. |.++|-+..+| |++||+.+++.+..++..
T Consensus 127 ~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 127 QQSKQFVSGGMAG-LVLSERNWLGNKDSV----VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred hhhhheeecCcce-EEEehhhhhcCccce----eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCC
Confidence 57889999888 777764322221111 112234799999996 67888876665 999999999888777622
Q ss_pred c----CCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 610 K----DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 610 ~----~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
. ...-...+.|.++. .|+.|-.| +|+|..++
T Consensus 199 ~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 199 SQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 1 11123457777665 45555444 68888877
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0067 Score=64.75 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=106.4
Q ss_pred CCCccccCCCCCeEEEeeceE-EEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee
Q 047837 3 PNHNIKKPDSSSKCAYVAGCV-LVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI 81 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~-v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~ 81 (882)
|.++++.|++...++...+.. +.+-+............-. ..-..+++++++..+.+... .+..|.+.|..+.+.+
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~--~~p~~i~v~~~~~~vyv~~~-~~~~v~vid~~~~~~~ 109 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG--VYPAGVAVNPAGNKVYVTTG-DSNTVSVIDTATNTVL 109 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC--ccccceeeCCCCCeEEEecC-CCCeEEEEcCccccee
Confidence 567888888875555555443 4444444222222111110 23457899999987766643 3578999998888877
Q ss_pred EEeeccccceeEEEECCCCCEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC--CCcEE
Q 047837 82 SELKGHLYGVECIAFSPDGEHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG--KKHLK 154 (882)
Q Consensus 82 ~~l~~h~~~V~~lafspdg~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~--~~~i~ 154 (882)
+...--. .-..++++|+++.+..+. +++.+.|..+++.+.+..... .+ ..++++|+|+.+..+. ++.|.
T Consensus 110 ~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 110 GSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEE
Confidence 7654322 667899999998877665 689999999999998866553 34 9999999999777776 47899
Q ss_pred EEEcccCcc
Q 047837 155 FWTIGSSAT 163 (882)
Q Consensus 155 iwd~~~~~~ 163 (882)
+.|......
T Consensus 186 vi~~~~~~v 194 (381)
T COG3391 186 VIDTSGNSV 194 (381)
T ss_pred EEeCCCcce
Confidence 999665443
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.018 Score=54.07 Aligned_cols=110 Identities=16% Similarity=0.059 Sum_probs=70.1
Q ss_pred CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCce
Q 047837 253 SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHS 332 (882)
Q Consensus 253 ~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~ 332 (882)
..+++.|+..+.+.-.|..+|+..-+-... .++-+-+..-.+.++.++..|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----------------------------~RiE~sa~vvgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------------------------VRIECSAIVVGDFVVLGCYSGG 74 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----------------------------ceeeeeeEEECCEEEEEEccCc
Confidence 457788888899988888887765432110 0011111122344677888999
Q ss_pred EEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecc
Q 047837 333 LYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDV 410 (882)
Q Consensus 333 i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 410 (882)
+++.+..+++......... .|-+-+...+++.++..++.|++....|..+...+.+..
T Consensus 75 lYfl~~~tGs~~w~f~~~~--------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILE--------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEEEecchhheeeeeehh--------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 9999998885543322211 111111112688899999999999999999888776643
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0029 Score=67.54 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=114.7
Q ss_pred CCCCccccCCCCCeEEEeec-eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC-CCCeEEEEECCCce
Q 047837 2 KPNHNIKKPDSSSKCAYVAG-CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG-PQPAVLVWDCANLA 79 (882)
Q Consensus 2 ~~~~~~~~pd~~~~~~~~~~-~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~-~d~~I~vwd~~t~~ 79 (882)
.|++++..++++..++...+ +.|.+.|.++.+..+...-- .....++++|+++.+.++..+ .++++.+.|..+++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 36788999998855555443 78999998888887765322 256789999999999998765 37899999999999
Q ss_pred eeEEeeccccceeEEEECCCCCEEEEEc---CEEEEEEcCcceeee-e----eecCCcccceeEEEEccCCCEEEEECC-
Q 047837 80 FISELKGHLYGVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVM-K----LKANSSCSAITSACFSSDAKFIVTAGK- 150 (882)
Q Consensus 80 ~~~~l~~h~~~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~-~----~~~~~~~~~v~~l~fs~d~~~l~~~~~- 150 (882)
.+.+...-..+ ..++++|+|..+.... +.|.+.|..+..... . .... .....+.++++++.+.+...
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~---~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG---TGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC---CCCceEEECCCCCEEEEEecc
Confidence 98886544445 8999999999777666 999999977766653 1 2211 45578899999997777654
Q ss_pred ---CcEEEEEcccCcc
Q 047837 151 ---KHLKFWTIGSSAT 163 (882)
Q Consensus 151 ---~~i~iwd~~~~~~ 163 (882)
+.+...|..++..
T Consensus 228 ~~~~~v~~id~~~~~v 243 (381)
T COG3391 228 SGSNNVLKIDTATGNV 243 (381)
T ss_pred CCCceEEEEeCCCceE
Confidence 2566666655443
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00016 Score=77.13 Aligned_cols=148 Identities=8% Similarity=0.005 Sum_probs=102.5
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
+++.|+.-|.+++|+-..+........+....+..+..+++..++|.|+..|.|.++-++...........+....|...
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~r 126 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCR 126 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCce
Confidence 89999999999999987764444444445566777888999999999999999999988864443333333333446789
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCc----eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGK----LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
|++++|++++..+++|...|+|..-.+.+.. ..+.+. .....|..+... ++.+|++...- -.+.+++.
T Consensus 127 VTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il--~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL--SEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred EEEEEecccccEEeecCCCceEEEEEechhhhhccccceee--ccCcceEEeecc-cceehHhhhhh--hheeecch
Confidence 9999999999999999999999988887621 111222 345566666654 23344443322 34455543
No 349
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0033 Score=68.96 Aligned_cols=160 Identities=11% Similarity=0.147 Sum_probs=101.6
Q ss_pred EEEEEcCCC-----cEEEEEcCCC-----ceeE--EEeec-----CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc
Q 047837 491 FLASGGRDR-----TIHLYDVKRN-----FDLI--ESIDD-----HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 491 ~l~~g~~dg-----~v~iwd~~~~-----~~~~--~~~~~-----h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
+|++-+.|+ .++||++... ..++ ..+.. ...++..++.+.+-+.+|.|-.+|.|..+.-+-.+
T Consensus 79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 566655553 5899998752 2233 11222 35678999999999999999999999998543111
Q ss_pred cceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCce-EEEEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL-IRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
... .+..-......+|+.+++..++..++-+..-..|.+|.+....+ +..+. .|...+.|..|++....+++++.
T Consensus 159 Drg--sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 159 DRG--SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred ccc--cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeec--cCCccceeeecCCCCccEEEecC
Confidence 100 01111122346999999999998733333446799999984332 33344 67788899999886654555543
Q ss_pred CCcEEEEEccCCeEEEEEc-cCCC
Q 047837 633 NKSICLYDFISGEMVAKAM-GHGE 655 (882)
Q Consensus 633 dg~i~iwd~~~~~~~~~~~-~h~~ 655 (882)
..+.+||.....+-..+. ||..
T Consensus 235 -e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 235 -EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred -ceEEEEcCCCcceeeeecCCCeE
Confidence 469999987655444554 5543
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.81 E-value=0.042 Score=61.17 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=90.7
Q ss_pred eEEEEeCccCccceeeeccceec-ccC--CceEEEEEecCCC---EEEEEeCCCcEEEEEccCCceEEEEEecc------
Q 047837 543 SLVVRDVVETNSAYKISRRHQQL-ASQ--GTVYDMDIDPTME---VVITVGQDKKINSFSIAAGKLIRSFKQAK------ 610 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~------ 610 (882)
.|.-.|+++++........+... ... ....-+.+..+|+ .++.+..+|.+.+.|-.+|+.+...+...
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 46667777777665544332211 100 1112223334666 78899999999999999999863211000
Q ss_pred ----CCC-C----------------------------cEEEEECCCCCEEEEEeCC------------------------
Q 047837 611 ----DFG-D----------------------------PMKVTVDPSGSYLVCSYSN------------------------ 633 (882)
Q Consensus 611 ----~~~-~----------------------------v~~~~~spdg~~l~~~~~d------------------------ 633 (882)
... + -..++++|+..++.....+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 0 0126677766665543322
Q ss_pred ---------CcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCc
Q 047837 634 ---------KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAAL 698 (882)
Q Consensus 634 ---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 698 (882)
|.|.-+|+.+|+.+-+.........+. ..-.+..++.++.||.++.+|..+++.+..+.....+
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~ 504 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI 504 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc
Confidence 457778888888776654322111222 1124557777888999999999999988777655443
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.75 E-value=7e-06 Score=85.75 Aligned_cols=189 Identities=15% Similarity=0.168 Sum_probs=126.1
Q ss_pred EEEEEcCCCcEEEEEcCCCcee-EEEeecCCCCEEEEEEcc-CCCEEEEEe----CCCeEEEEeCccCccceeeecccee
Q 047837 491 FLASGGRDRTIHLYDVKRNFDL-IESIDDHSAAVTAVKFTC-NGRKILSCS----ADRSLVVRDVVETNSAYKISRRHQQ 564 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~-~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~ 564 (882)
+++.|..+|.|.+-.++..... .....+|....++++|++ |.+.||.|- .|..+.|||+.+.-....-.....
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs- 150 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS- 150 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc-
Confidence 7899999999999988764333 445667888999999998 666777663 356799999986521110000000
Q ss_pred cccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-ceEEEEEeccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEEc-
Q 047837 565 LASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-KLIRSFKQAKDFGDPMKVTVDP-SGSYLVCSYSNKSICLYDF- 641 (882)
Q Consensus 565 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~- 641 (882)
........+++|..+.+++++|...+.+.++|++.. .....+ ....+..+..+| .+.|+++-. ||.|.+||.
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~ 225 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTY 225 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCCCceeccc-cCceeeccch
Confidence 011234558888888899999999999999999832 222222 234566778888 778888775 899999994
Q ss_pred cCC-eEEEEEccC----CCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCC
Q 047837 642 ISG-EMVAKAMGH----GEVITGVTFLPDCK-HIVSVG-GDGLQRVKEKYG 685 (882)
Q Consensus 642 ~~~-~~~~~~~~h----~~~v~~l~~s~d~~-~l~s~~-~dg~i~vwd~~~ 685 (882)
..- .++..+... ...+..++|+|... .|++.. ..++|+++|+..
T Consensus 226 rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 226 RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 222 222222211 12488999999653 455555 456899999863
No 352
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.73 E-value=0.14 Score=57.77 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=98.3
Q ss_pred EEEEEEccC-CCEEEEEeC----------CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCc
Q 047837 523 VTAVKFTCN-GRKILSCSA----------DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKK 591 (882)
Q Consensus 523 v~~~~~s~~-~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 591 (882)
|.++.|..| +.++++|+. .|.|.++.+.......... .+ .-.+.+.++..- +|+++|. -+..
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~-e~---~v~Gav~aL~~f-ngkllA~--In~~ 849 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA-ET---VVKGAVYALVEF-NGKLLAG--INQS 849 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee-ee---eeccceeehhhh-CCeEEEe--cCcE
Confidence 444557666 666666653 4678888777522222221 11 112444444322 4666654 5568
Q ss_pred EEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc--CCeEEEEEc-cCCCCeEEEEECCCCCE
Q 047837 592 INSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI--SGEMVAKAM-GHGEVITGVTFLPDCKH 668 (882)
Q Consensus 592 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~--~~~~~~~~~-~h~~~v~~l~~s~d~~~ 668 (882)
|++|+..+.+.++.-. .+..++..+...-.|..+++|.--+.+.+.-.+ .|...-.-+ .+....+++.+-.+..+
T Consensus 850 vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~y 927 (1096)
T KOG1897|consen 850 VRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTY 927 (1096)
T ss_pred EEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceE
Confidence 9999999887777655 778899999999999999999888877665444 443433322 26778888888766555
Q ss_pred EEEEeCCCeEEEEeCC
Q 047837 669 IVSVGGDGLQRVKEKY 684 (882)
Q Consensus 669 l~s~~~dg~i~vwd~~ 684 (882)
| -+..+|.+.+-...
T Consensus 928 l-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 928 L-GAENSGNLFTVRKD 942 (1096)
T ss_pred E-eecccccEEEEEec
Confidence 4 46778888876655
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.049 Score=58.58 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=43.0
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC
Q 047837 569 GTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG 624 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg 624 (882)
+++..+++||+++++|.-..+|.+.+....-.+.+..+.. .....+..|+|.-+.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-DSKSPPKQMAWCGND 271 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec-CcCCCCcEEEEECCC
Confidence 5899999999999999999999999998776666666652 234567778887553
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.019 Score=60.12 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=85.0
Q ss_pred eEEEEEECCCCceEEEEEecCCCCCeEEEEEc---C----CCCEEEEeec---C-----CCCeEEEEECCCc----eeeE
Q 047837 22 CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMS---R----DGRYVAAGES---G-----PQPAVLVWDCANL----AFIS 82 (882)
Q Consensus 22 ~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~s---p----dg~~la~g~~---~-----~d~~I~vwd~~t~----~~~~ 82 (882)
..|.+.|..+.+.+..+.-... ..+.+++.- . ...+|++|+. + ..|.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4689999999888877665553 456666543 2 2579999864 1 1288999999884 2222
Q ss_pred Ee--eccccceeEEEECCCCCEEEEEcCEEEEEEcCcce-eeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEc
Q 047837 83 EL--KGHLYGVECIAFSPDGEHLVTVGGYIYLWNWRSAM-LVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTI 158 (882)
Q Consensus 83 ~l--~~h~~~V~~lafspdg~~Las~~~~i~iWd~~~g~-~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~ 158 (882)
.+ ....++|++|+-- +|+++++.++.|.+|++...+ ++..-..+.. ..+.++... +++++++.- +.+.++.+
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecce-EEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 22 2357889998876 555555666999999999888 5544433321 355555544 557776654 67777755
Q ss_pred c
Q 047837 159 G 159 (882)
Q Consensus 159 ~ 159 (882)
.
T Consensus 157 ~ 157 (321)
T PF03178_consen 157 D 157 (321)
T ss_dssp E
T ss_pred E
Confidence 4
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.60 E-value=0.12 Score=57.60 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=42.3
Q ss_pred CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccC
Q 047837 590 KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653 (882)
Q Consensus 590 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 653 (882)
+.|.-+|+.+|+.+-..... ....... +.-.+.+++.+..+|.++.+|.++|+.+-..+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~--~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKED--FPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCC--CCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 45888899999888777521 1111111 2224557777888999999999999999887643
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.074 Score=57.23 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=101.7
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-----eeEEEeecCCCCEEEEEEccCCCEEEEEe
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-----DLIESIDDHSAAVTAVKFTCNGRKILSCS 539 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 539 (882)
+.|..+.|..+.. |+.-..||.+++||+.... ..+....-....+....+..+| ++.-.
T Consensus 81 ~~iv~~~wt~~e~--------------LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt 144 (410)
T PF04841_consen 81 GRIVGMGWTDDEE--------------LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLT 144 (410)
T ss_pred CCEEEEEECCCCe--------------EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEEC
Confidence 6788888887664 6677789999999986432 0011111111222233343355 33333
Q ss_pred CCCeEEEEeCccCc-cceeeeccceecc--c-CCceEE-EEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCC
Q 047837 540 ADRSLVVRDVVETN-SAYKISRRHQQLA--S-QGTVYD-MDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGD 614 (882)
Q Consensus 540 ~dg~i~vwd~~~~~-~~~~~~~~~~~~~--~-~~~v~~-~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 614 (882)
.++.+.+.+-.... ............. + ...... ..++.+....+....++.+.+.+-...+. + ...++
T Consensus 145 ~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~ 218 (410)
T PF04841_consen 145 GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I---DSDGP 218 (410)
T ss_pred CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c---cCCCC
Confidence 44444443222111 1111111110000 0 001111 23444444444444555555443322111 1 23468
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 615 PMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH-GEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 615 v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
+..|++||+|++||.-..+|.+.+....-.+.+..+... ......|.|.-++..++.- ...+.+..
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 999999999999999999999999987666666666543 3566788887665444433 34455554
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.57 E-value=0.0017 Score=72.53 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=91.0
Q ss_pred CCCccccCCCCCeEEEee-------c--eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC--------
Q 047837 3 PNHNIKKPDSSSKCAYVA-------G--CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG-------- 65 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~-------~--~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~-------- 65 (882)
+...+++|||. .++|.. + ..|.+++.. +.....+.+ ...+.-.|+|||+.|++...+
T Consensus 352 vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g----~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 352 ITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG----HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC----CCCCCceECCCCCceEEEecCcceEEEec
Confidence 35678999987 677776 2 267777763 333333333 248889999999988887532
Q ss_pred --CCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEE---EEcCcce-ee---eeeecCCcccceeE
Q 047837 66 --PQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYL---WNWRSAM-LV---MKLKANSSCSAITS 135 (882)
Q Consensus 66 --~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~i---Wd~~~g~-~~---~~~~~~~~~~~v~~ 135 (882)
..+.+.+.++..++... ...+.|..+.|||||++||... +.|+| -....|+ .+ ..+... ....+.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG-LGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc-cCCcccc
Confidence 12334444444443322 2356799999999999999877 87777 5545564 11 112211 1134688
Q ss_pred EEEccCCCEEEEECCCcEEEEEc
Q 047837 136 ACFSSDAKFIVTAGKKHLKFWTI 158 (882)
Q Consensus 136 l~fs~d~~~l~~~~~~~i~iwd~ 158 (882)
+.|..++.+++...++...+|.+
T Consensus 502 l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 502 LDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred ceEecCCEEEEEecCCCCceEEE
Confidence 99999999775544443444544
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.031 Score=56.81 Aligned_cols=209 Identities=13% Similarity=0.096 Sum_probs=127.3
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
++.+--..+.|.-|+..++.... +. +...+.++..-..+..|+++. .| +.+++.+++.....+. ....-.....
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~--~~-~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~-~~~~~~~~~r 112 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRV--FP-SPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLA-EPEDGLPLNR 112 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEE--EE-CCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEec-cccCCCCcCC
Confidence 56666677888889887653332 32 223334444433444555443 33 6677765443322221 1111122246
Q ss_pred eEEEEEecCCCEEEEEeC-----C----CcEEEEEcc-CCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC-CCcEEEE
Q 047837 571 VYDMDIDPTMEVVITVGQ-----D----KKINSFSIA-AGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS-NKSICLY 639 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~-----d----~~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~i~iw 639 (882)
.+.....|+|.+.+.... . ..-.+|-+. .+..++.+. .+-...+.|+||||++.|..+.. .+.|.-|
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~--~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD--DDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec--CcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 778899999998776554 1 112344444 466666665 55667789999999988776654 4788888
Q ss_pred EccC--C----e-EEEEEccCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCCCCCCCcccCCC-CCcccEEEecCCC
Q 047837 640 DFIS--G----E-MVAKAMGHGEVITGVTFLPDCKHIVSVGGDG-LQRVKEKYGILPPRNFAQP-AALSPIIFCEEED 708 (882)
Q Consensus 640 d~~~--~----~-~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~-~~~~~~~~s~~~~ 708 (882)
++.. + + ....+..+.+..-.++...+|.+.+++..+| .|.+|+.. ++....+..| ......+|-+.+-
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~ 267 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDL 267 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCc
Confidence 7752 2 1 1222333557777888999998886555554 89999988 7777777776 5566777776543
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.53 E-value=0.0094 Score=66.66 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=66.5
Q ss_pred CCeEEEEEcCCCCEEEEeec------CCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc-C---------
Q 047837 45 KPLCCVAMSRDGRYVAAGES------GPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-G--------- 108 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~------~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~--------- 108 (882)
..+...++||||+.+|.... ++...|.+++. .+.......+. ..+.-.|+|||+.|++.. +
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 46889999999999988752 22335666665 33332223332 388899999999887774 2
Q ss_pred ----EEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEE
Q 047837 109 ----YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKF 155 (882)
Q Consensus 109 ----~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~i 155 (882)
.+.+.++..++... . ..+.|..+.|||||+.++...++.|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~--~---~~g~Issl~wSpDG~RiA~i~~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--R---VPGPISELQLSRDGVRAAMIIGGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh--c---cCCCcCeEEECCCCCEEEEEECCEEEE
Confidence 22222333333222 1 126799999999999998877666655
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.52 E-value=0.0041 Score=66.66 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=83.9
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 047837 516 IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSF 595 (882)
Q Consensus 516 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw 595 (882)
+.........+.++|+|+++++ +.||...++.....+. +. .+.-...+|.+.++ +|+-...++|.++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--k~---------~G~g~~~vw~~~n~-yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--KA---------FGSGLSFVWSSRNR-YAVLESSSTIKIY 94 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--EE---------EEE-SEEEE-TSSE-EEEE-TTS-EEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--cc---------cCceeEEEEecCcc-EEEEECCCeEEEE
Confidence 3334455789999999999998 4567788877332111 11 13556788999555 6666668889997
Q ss_pred EccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC
Q 047837 596 SIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 596 d~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d 675 (882)
.--+.+....+. ....+..+-. |.+|...+.+ .|.+||+.+++.++++.. .+|..+.|+++|++++..+.+
T Consensus 95 kn~~~~~~k~i~---~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 95 KNFKNEVVKSIK---LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp ETTEE-TT--------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred EcCccccceEEc---CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC
Confidence 433333333443 1123444433 8888877655 899999999999999973 348999999999999988865
Q ss_pred CeEEEEeCC
Q 047837 676 GLQRVKEKY 684 (882)
Q Consensus 676 g~i~vwd~~ 684 (882)
.+.|++..
T Consensus 166 -~i~il~~~ 173 (443)
T PF04053_consen 166 -SIYILKYN 173 (443)
T ss_dssp -SEEEEEE-
T ss_pred -eEEEEEec
Confidence 56666643
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.045 Score=55.68 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=96.2
Q ss_pred CCEEEEEEccCCCEEEEEeC---------CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC-C
Q 047837 521 AAVTAVKFTCNGRKILSCSA---------DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD-K 590 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~ 590 (882)
...+.+...|+|.+.+.... ...-.+|.+.......++...+. ..-+.++||||++.|..+... +
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-----~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-----TIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE-----EecCceEECCCCCEEEEEeCCCC
Confidence 44567888999988876544 11123444442223333333211 356789999999877776654 7
Q ss_pred cEEEEEccC--Cc---eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC-cEEEEEccCCeEEEEEccCCCCeEEEEEC-
Q 047837 591 KINSFSIAA--GK---LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK-SICLYDFISGEMVAKAMGHGEVITGVTFL- 663 (882)
Q Consensus 591 ~v~iwd~~~--~~---~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~s- 663 (882)
.|.-|++.. +. ....+......+..-.++...+|.+.+++..+| .|.+|+.+ |+++..+.-....+++++|-
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 888887752 21 111122123557778899999999987555554 89999987 99999888777889999995
Q ss_pred CCCCEEEEEeC
Q 047837 664 PDCKHIVSVGG 674 (882)
Q Consensus 664 ~d~~~l~s~~~ 674 (882)
++.+.|...+.
T Consensus 265 ~~~~~L~iTs~ 275 (307)
T COG3386 265 PDLNTLYITSA 275 (307)
T ss_pred CCcCEEEEEec
Confidence 45566655543
No 362
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.46 E-value=0.33 Score=55.02 Aligned_cols=572 Identities=12% Similarity=0.095 Sum_probs=265.8
Q ss_pred CeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEE-cC---CCCEEEEeecCCCCeEEEEECCCceeeEEeec---
Q 047837 14 SKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAM-SR---DGRYVAAGESGPQPAVLVWDCANLAFISELKG--- 86 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~-sp---dg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~--- 86 (882)
..++.+.++.+.++-+.-.. ++.+..-..-+.|..++. -| +..+|.+++....-.|.-||-...+.+..-.+
T Consensus 28 ~nlivAk~~~lei~~~~~~G-Lq~i~sv~ifg~I~~i~~fRp~g~~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~v~ 106 (1096)
T KOG1897|consen 28 LNLIVAKGNRLEILLVEPNG-LQPITSVPIFGTIATIALFRPPGSDKDYLFVATDSYRYFILEWDEESIQVVTRAHGDVS 106 (1096)
T ss_pred eeeeeeccceEEEEeecccc-ceeeEeeccceeEEEEEeecCCCCCcceEEEEECcceEEEEEEccccceEEEEeccccc
Confidence 36777777766666554433 333322222256666664 33 45688888764433466688754544433221
Q ss_pred -----cccceeEEEECCCCCEEEEEc--CEEEEEEcCc------ceeeeeeecCCcccceeEEEEccCC--CEEEEE---
Q 047837 87 -----HLYGVECIAFSPDGEHLVTVG--GYIYLWNWRS------AMLVMKLKANSSCSAITSACFSSDA--KFIVTA--- 148 (882)
Q Consensus 87 -----h~~~V~~lafspdg~~Las~~--~~i~iWd~~~------g~~~~~~~~~~~~~~v~~l~fs~d~--~~l~~~--- 148 (882)
....=..++..|.++.+...- |.+++-.+.+ +..+..+...-..-.|..++|.-++ ..+++.
T Consensus 107 dr~gr~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~D 186 (1096)
T KOG1897|consen 107 DRSGRPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKD 186 (1096)
T ss_pred ccccccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEc
Confidence 122334678889998665544 8777777666 4444444333223568888886532 234333
Q ss_pred CC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEE
Q 047837 149 GK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILY 227 (882)
Q Consensus 149 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~ 227 (882)
++ .+++.++++-.......-... ..+.......... .....-++.+...-.+|
T Consensus 187 s~~~Hv~~yelnl~~ke~~~~~w~-~~v~~~a~~li~V-------------------------P~~~gGvlV~ge~~I~Y 240 (1096)
T KOG1897|consen 187 SDGRHVKTYELNLRDKEFVKGPWS-NNVDNGASMLIPV-------------------------PSPIGGVLVIGEEFIVY 240 (1096)
T ss_pred CCCcEEEEEEeccchhhccccccc-cccccCCceeeec-------------------------CCCCceEEEEeeeEEEE
Confidence 22 478888886442200000000 0000000000000 00001112222222222
Q ss_pred EEccCceeee--Eeece-eeeeEEEecCCCEEEEEecCCeEEeeecc-cceecccccccCcccCCCCCccccchhhhccc
Q 047837 228 IVHSGLSVTK--SVDLK-VKNGFALSASSKLIACACSNGAVHLFDIQ-SLKHAGTLHYSEAKKCNGENDTVSTAKATELY 303 (882)
Q Consensus 228 ~~~~~~~~~~--~~~~~-~~~~~~~s~d~~~l~~~~~dg~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (882)
.......... ..... ....-...+++.+.+.+..+|.+...-+. +++....+. ..
T Consensus 241 ~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~---------------------lk 299 (1096)
T KOG1897|consen 241 MSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLD---------------------LK 299 (1096)
T ss_pred eeCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeecccccccceE---------------------EE
Confidence 1111110000 00000 11223456788888999999988766554 443332210 01
Q ss_pred cccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceee-eeecCcceeeeecccCCCCCCCCCcceeeeccC-
Q 047837 304 FKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCC-VLVSHSACIWDIKNLGCENMHDPSVSCVARGCT- 381 (882)
Q Consensus 304 ~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~- 381 (882)
....+..+-+.++.+-++|-+.+|+.-|.-.+-.+.+........ .+.. + ..-++|..+++-..
T Consensus 300 ve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet-------~-------~NLgPI~Dm~Vvd~d 365 (1096)
T KOG1897|consen 300 VEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILET-------F-------VNLGPIVDMCVVDLD 365 (1096)
T ss_pred EEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhh-------c-------ccccceeeEEEEecc
Confidence 112334444557788899999999885554555554322111000 0000 0 00123333333211
Q ss_pred --CCcEEEEee---CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeee--eeccccCeEEEEEcCC
Q 047837 382 --GGVSFSTCS---ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTME--TSVSTQGYRSMAVSSR 454 (882)
Q Consensus 382 --~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~ 454 (882)
.+..++||+ .||++|+....-+-.... ..... |.-..+.+. +....+..-.+.|...
T Consensus 366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A--------~i~l~--------Gikg~w~lk~~v~~~~d~ylvlsf~~e 429 (1096)
T KOG1897|consen 366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELA--------SIDLP--------GIKGMWSLKSMVDENYDNYLVLSFISE 429 (1096)
T ss_pred ccCCceEEEEeCCCCCCcEEEEecccccceee--------EeecC--------CccceeEeeccccccCCcEEEEEeccc
Confidence 234566654 589999987543321100 00000 000111111 1111222233333333
Q ss_pred CCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCC---------CcEEEEEcCCCceeEEEeecCCCCEEE
Q 047837 455 GSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD---------RTIHLYDVKRNFDLIESIDDHSAAVTA 525 (882)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---------g~v~iwd~~~~~~~~~~~~~h~~~v~~ 525 (882)
.+.+.+.+.-..+....|+.+.+ .++.+.-. ..|++++-. .+...+. ....++.
T Consensus 430 Trvl~i~~e~ee~~~~gf~~~~~-------------Tif~S~i~g~~lvQvTs~~iRl~ss~---~~~~~W~-~p~~~ti 492 (1096)
T KOG1897|consen 430 TRVLNISEEVEETEDPGFSTDEQ-------------TIFCSTINGNQLVQVTSNSIRLVSSA---GLRSEWR-PPGKITI 492 (1096)
T ss_pred eEEEEEccceEEeccccccccCc-------------eEEEEccCCceEEEEecccEEEEcch---hhhhccc-CCCceEE
Confidence 33322322222222222332222 22222221 235555532 1222222 2344555
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC------CEEEEEeCCCcEE-EEEcc
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM------EVVITVGQDKKIN-SFSIA 598 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~------~~l~~~~~d~~v~-iwd~~ 598 (882)
.+.+.+...++.++.++.+...++.... ..... + ..-...|.|+.++|-| ++++.|..+..+. +.-..
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~--~--~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVS--H--KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc-eeeee--e--heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 5555566688888888878777777554 11111 1 1123589999999842 3678887666443 33334
Q ss_pred CCceEEEEE--eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc--CCeEEEEE--ccCCCCeEEEEECCCCCEEEEE
Q 047837 599 AGKLIRSFK--QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI--SGEMVAKA--MGHGEVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 599 ~~~~~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~--~~~~~~~~--~~h~~~v~~l~~s~d~~~l~s~ 672 (882)
+...+.... ...-...|.-.+|--|..||.++..||.+.-|-+. +|+.-..- .--..++.--.|+..++.-+-+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa 647 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA 647 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence 444333322 11123345555666678999999999988766554 44432111 1124456555676665554445
Q ss_pred eCCCeEEEEeCCC
Q 047837 673 GGDGLQRVKEKYG 685 (882)
Q Consensus 673 ~~dg~i~vwd~~~ 685 (882)
..|.-..+|--++
T Consensus 648 ~sdrP~viY~~n~ 660 (1096)
T KOG1897|consen 648 LSDRPTVIYSSNG 660 (1096)
T ss_pred eCCCCEEEEecCC
Confidence 5566666665544
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.45 E-value=0.0047 Score=69.82 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=97.5
Q ss_pred EEcCCCcEEEEEcCCCceeEEEeecCCCC-EEEEEEcc-----CCCEEEEEeCCCeEEEEeCccCccceeeeccceeccc
Q 047837 494 SGGRDRTIHLYDVKRNFDLIESIDDHSAA-VTAVKFTC-----NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 494 ~g~~dg~v~iwd~~~~~~~~~~~~~h~~~-v~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
.......|+-.|+..+ +.+..+..|... |..++-.. ....-+.|-.+..+..||.+-...... .........
T Consensus 499 ~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-~~~~k~Y~~ 576 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-DSQSKQYSS 576 (794)
T ss_pred cCCCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-ecccccccc
Confidence 3345678999999988 788888877654 55554321 123455666778899999986542211 112223344
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEc
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~ 641 (882)
.....|++-+.+| +||+|+.+|.||+||- .|+..++.- .+-..+|..|..+.||++|++.+ +..|.|++.
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5567788777766 7899999999999994 444433332 25678999999999999988776 457788876
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.42 E-value=0.065 Score=56.07 Aligned_cols=172 Identities=12% Similarity=0.173 Sum_probs=101.1
Q ss_pred CcEEEEEcCCC----ceeE-EEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEE
Q 047837 499 RTIHLYDVKRN----FDLI-ESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYD 573 (882)
Q Consensus 499 g~v~iwd~~~~----~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 573 (882)
|.|.++++... .++. ..-....++|++++-- ++ +|+.+. .+.|.+|++............+. ...+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~----~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDS----PFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-B----SSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecc----eEEEEE
Confidence 88999999873 1111 1122357889988875 44 455444 37799999987662222221111 124445
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEccC-CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC-------Ce
Q 047837 574 MDIDPTMEVVITVGQDKKINSFSIAA-GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS-------GE 645 (882)
Q Consensus 574 ~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~-------~~ 645 (882)
+... +.++++|..-..+.++.... ...+..+........++++.|-+|++.++++..+|.+.++.... +.
T Consensus 135 l~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 135 LSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp EEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred Eecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccc
Confidence 5444 66999999888888775543 33344444334556688898887777999999999999998862 22
Q ss_pred --E--EEEEccCCCCeEEE---EECCC--CC------EEEEEeCCCeEEE
Q 047837 646 --M--VAKAMGHGEVITGV---TFLPD--CK------HIVSVGGDGLQRV 680 (882)
Q Consensus 646 --~--~~~~~~h~~~v~~l---~~s~d--~~------~l~s~~~dg~i~v 680 (882)
+ ...+. ....|+++ ++.|. +. .++-++.+|.|.+
T Consensus 213 ~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 2 22332 34567777 55552 22 3777888888873
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00095 Score=70.51 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=77.8
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcE-EEEECCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047837 569 GTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPM-KVTVDPSGSYLVCSYSNKSICLYDFISGEMV 647 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~ 647 (882)
..+..+.|+|.-..+|++..+|.|.+..+. .+.+.++. -+...++ +++|.|||++||+|-.||+|++-|+.+|..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip--~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP--IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc--CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 367889999999999999999999999988 77777776 4555666 9999999999999999999999999999877
Q ss_pred EEEc-cCCCCeEEEEEC
Q 047837 648 AKAM-GHGEVITGVTFL 663 (882)
Q Consensus 648 ~~~~-~h~~~v~~l~~s 663 (882)
.... .-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 6632 245678888886
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.33 E-value=0.15 Score=52.03 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=66.5
Q ss_pred cCCCCEEEEeecCCCCeEEEEECC-CceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeee-----
Q 047837 53 SRDGRYVAAGESGPQPAVLVWDCA-NLAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLK----- 125 (882)
Q Consensus 53 spdg~~la~g~~~~d~~I~vwd~~-t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~----- 125 (882)
...++.|++|+. +| +++++.. ..+....+ +...|..|...|+-+.|++.. +.+.++++..-.......
T Consensus 4 ~~~~~~L~vGt~--~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 4 DSWGDRLLVGTE--DG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred ccCCCEEEEEEC--CC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccc
Confidence 346788999965 66 9999993 33333333 233399999999888888777 999999987655444110
Q ss_pred -------cCCcccceeEEE---EccCCCEEEEECCCcEEEEEcccC
Q 047837 126 -------ANSSCSAITSAC---FSSDAKFIVTAGKKHLKFWTIGSS 161 (882)
Q Consensus 126 -------~~~~~~~v~~l~---fs~d~~~l~~~~~~~i~iwd~~~~ 161 (882)
.-.....+...+ -......|+++-.+.|.+|.+...
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence 001113344333 123455777777788888888653
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.16 Score=48.86 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=49.2
Q ss_pred eEEEECCCCCE-EEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC------CcEEEEEcccC
Q 047837 92 ECIAFSPDGEH-LVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK------KHLKFWTIGSS 161 (882)
Q Consensus 92 ~~lafspdg~~-Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~------~~i~iwd~~~~ 161 (882)
..|+|+|.-.+ ++.+- ....++|..+++.+..+...+...-.-.-.|||||.+|..... |.|-+||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 45889986544 44444 5678999999988777765543233445679999999998742 46899998643
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.30 E-value=9.8e-05 Score=77.53 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=104.1
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEc----CCCcEEEEEcCCCceeE---EEee-cCCCCEEEEEEcc
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG----RDRTIHLYDVKRNFDLI---ESID-DHSAAVTAVKFTC 530 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----~dg~v~iwd~~~~~~~~---~~~~-~h~~~v~~~~~s~ 530 (882)
+..+|...+++++|++-.. +.||.|- .|..+.|||+.+..... ..+. +-.....+++|..
T Consensus 97 ~tp~~ar~Ct~lAwneLDt------------n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr 164 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDT------------NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR 164 (783)
T ss_pred ecccccccccccccccccH------------HHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc
Confidence 4557788888999987633 2566663 45779999998752111 1111 2334566888988
Q ss_pred CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEc-cC-CceEEEEE
Q 047837 531 NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSI-AA-GKLIRSFK 607 (882)
Q Consensus 531 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~-~~-~~~~~~~~ 607 (882)
+.+.+.+|.....+.++|++......... . ...+..+.++| .+.++++-. |+.|.+||. .. ..++..+.
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~~~~~sv--n-----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~ 236 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSLDSVSSV--N-----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL 236 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhhhhhhhh--h-----hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh
Confidence 89999999999999999998322111111 1 12566788888 677877755 999999993 22 22222222
Q ss_pred e--ccCCCCcEEEEECCC--CCEEEEEeCCCcEEEEEcc
Q 047837 608 Q--AKDFGDPMKVTVDPS--GSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 608 ~--~~~~~~v~~~~~spd--g~~l~~~~~dg~i~iwd~~ 642 (882)
. ......+..++|+|. |...+..-..++|++||+.
T Consensus 237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 0 011234889999994 4333344456799999985
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0014 Score=69.21 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=78.1
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 612 FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVIT-GVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
...+..+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++-|+..+..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999999999999999999999987 777888887888887 99999999999999999999999999887766
Q ss_pred ccCCCCCcccEEEecCCCeEEEecc
Q 047837 691 NFAQPAALSPIIFCEEEDQKCRMDS 715 (882)
Q Consensus 691 ~~~~~~~~~~~~~s~~~~~~~~~~~ 715 (882)
.+ .|+.+.+.....|.
T Consensus 99 ~~---------~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SF---------LFSVETDISKGIWD 114 (665)
T ss_pred cc---------ccccccchheeecc
Confidence 42 34555555555554
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.001 Score=43.51 Aligned_cols=39 Identities=33% Similarity=0.552 Sum_probs=35.0
Q ss_pred CeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 644 GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 644 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
++++..+..|...|.++.|.++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.00046 Score=63.61 Aligned_cols=143 Identities=9% Similarity=-0.020 Sum_probs=85.8
Q ss_pred EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCC
Q 047837 534 KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 534 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
.+...+.|+.+.-++++......+..+.+. .. ...-.-+..+++|+.+|.|.+|...--........ ....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~-----e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFID-----EG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhh-----cc---eeecccCceEEeecccceEEEecCCccchHHHhhh-cccc
Confidence 344566788888888764433222221111 01 11222356789999999999998762111111110 1112
Q ss_pred CcEE-EEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC-CCeEEEEECCCCCEEEEE--eCCCeEEEEeCCC
Q 047837 614 DPMK-VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG-EVITGVTFLPDCKHIVSV--GGDGLQRVKEKYG 685 (882)
Q Consensus 614 ~v~~-~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~d~~~l~s~--~~dg~i~vwd~~~ 685 (882)
.+.+ +.--.++.+..+++.||.||.|++.-++.+.....|. .++..+..+..+++|+.+ |.|..++.|++..
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2222 2223356688899999999999999999888887787 555555555566666666 6666666666653
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.18 E-value=0.13 Score=52.48 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=91.5
Q ss_pred CCCeEEEeeceEEEEEEC-CCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEe------
Q 047837 12 SSSKCAYVAGCVLVVYDV-DSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISEL------ 84 (882)
Q Consensus 12 ~~~~~~~~~~~~v~vwd~-~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l------ 84 (882)
+...++...++ |.+|+. ......... +. ..|..+.+-|+-+.|.+-+ |+.+.++++.+......-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~--~~I~ql~vl~~~~~llvLs---d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KL--SSITQLSVLPELNLLLVLS---DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ec--ceEEEEEEecccCEEEEEc---CCccEEEEchhhcccccccccccc
Confidence 34344444455 999999 333333332 33 4599999999877766653 579999999876554411
Q ss_pred --------eccccceeEEE---ECCCCCEEEEEc-CEEEEEEcCcc-----eeeeeeecCCcccceeEEEEccCCCEEEE
Q 047837 85 --------KGHLYGVECIA---FSPDGEHLVTVG-GYIYLWNWRSA-----MLVMKLKANSSCSAITSACFSSDAKFIVT 147 (882)
Q Consensus 85 --------~~h~~~V~~la---fspdg~~Las~~-~~i~iWd~~~g-----~~~~~~~~~~~~~~v~~l~fs~d~~~l~~ 147 (882)
......+...+ -.....+|+.+- ..|.||.+... +..+.+..+ ..+..++|. ++.++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEe--CCEEEE
Confidence 01233444444 223455666666 89999988763 455666655 789999999 667787
Q ss_pred ECCCcEEEEEcccCcc
Q 047837 148 AGKKHLKFWTIGSSAT 163 (882)
Q Consensus 148 ~~~~~i~iwd~~~~~~ 163 (882)
+..+...+.|+.++..
T Consensus 154 ~~~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSP 169 (275)
T ss_pred EeCCceEEEecCCCCc
Confidence 8788899999987665
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.07 E-value=0.39 Score=52.46 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=71.5
Q ss_pred CccccCCCCCeEEEee--ce----EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC---------CCe
Q 047837 5 HNIKKPDSSSKCAYVA--GC----VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP---------QPA 69 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~--~~----~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~---------d~~ 69 (882)
...++|||+ +++|.. ++ .|+|+|+++++.+....... .-..++|.+|++.+.....+. ...
T Consensus 128 ~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 457889987 666654 22 79999999997764321111 223499999988776665433 335
Q ss_pred EEEEECCCceee--EEeeccccc--eeEEEECCCCCEEEEEc------CEEEEEEcCcc
Q 047837 70 VLVWDCANLAFI--SELKGHLYG--VECIAFSPDGEHLVTVG------GYIYLWNWRSA 118 (882)
Q Consensus 70 I~vwd~~t~~~~--~~l~~h~~~--V~~lafspdg~~Las~~------~~i~iWd~~~g 118 (882)
|+.|.+.+...- ..+.+.... ...+..++|+++|+... ..+.+-|+..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 889998876432 334443332 56889999999987654 35788888775
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.12 Score=53.66 Aligned_cols=199 Identities=18% Similarity=0.191 Sum_probs=97.7
Q ss_pred EEEEEcCCCcEEEEEcCCC---ceeEEEeec---CC----CCEEEEEEccCCCEEEEEeC------CCeEEEEeCccCcc
Q 047837 491 FLASGGRDRTIHLYDVKRN---FDLIESIDD---HS----AAVTAVKFTCNGRKILSCSA------DRSLVVRDVVETNS 554 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~---~~~~~~~~~---h~----~~v~~~~~s~~~~~l~s~~~------dg~i~vwd~~~~~~ 554 (882)
+++-|-..+.|+|+|+.+. .++.+++.. +. .....+..-|+|+.++++-. -|-+.+.|-++.+.
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v 169 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV 169 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccc
Confidence 4445557889999999852 233444432 11 22334455678988887532 24577777664433
Q ss_pred ceeeeccceecccCCceEEEEEecCCCEEEEEe--------------------CCCcEEEEEccCCceEEEEEeccCCCC
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDPTMEVVITVG--------------------QDKKINSFSIAAGKLIRSFKQAKDFGD 614 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~ 614 (882)
.-+..... .....-+.+-+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 170 ~g~We~~~---~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 170 KGRWEKDR---GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp EEE--SB----TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred cceeccCC---CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 32222111 1123557788888888888763 235799999999999999974333334
Q ss_pred cEEEEECC--CCCEEEEEe-CCCcEEEEEc-cCCe----EEEEEccC-----------------CCCeEEEEECCCCCEE
Q 047837 615 PMKVTVDP--SGSYLVCSY-SNKSICLYDF-ISGE----MVAKAMGH-----------------GEVITGVTFLPDCKHI 669 (882)
Q Consensus 615 v~~~~~sp--dg~~l~~~~-~dg~i~iwd~-~~~~----~~~~~~~h-----------------~~~v~~l~~s~d~~~l 669 (882)
+..+.|.. +..+=++++ -..+|..|-- +.++ .+..+... ..-|+.+..|.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 66777755 444433333 3344554443 4443 22222211 2457899999999999
Q ss_pred EEEe-CCCeEEEEeCCCCCCCccc
Q 047837 670 VSVG-GDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 670 ~s~~-~dg~i~vwd~~~~~~~~~~ 692 (882)
.... .+|.||.||++++..++..
T Consensus 327 Yvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 327 YVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp EEEETTTTEEEEEE-SSTTS-EEE
T ss_pred EEEcccCCcEEEEecCCCCCCcEE
Confidence 8766 7999999999998877654
No 375
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=97.02 E-value=0.042 Score=51.13 Aligned_cols=140 Identities=17% Similarity=0.248 Sum_probs=86.2
Q ss_pred eEEEeeceEEEEEECCCCc--eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCC----eEEEE---ECC--CceeeE-
Q 047837 15 KCAYVAGCVLVVYDVDSST--QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQP----AVLVW---DCA--NLAFIS- 82 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~--~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~----~I~vw---d~~--t~~~~~- 82 (882)
.++...|+.|.+|++.... .+..+ -+. +.|..++++..|+||++-...... .+++| ... ..++++
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTF--STV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEE--cch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 3345778899999998333 33333 222 789999999999999998753222 35553 332 222322
Q ss_pred Eeecc---------------------ccceeEEEECC-CCCEEEEEcCEEEEEEcCccee-ee---eeec------CCcc
Q 047837 83 ELKGH---------------------LYGVECIAFSP-DGEHLVTVGGYIYLWNWRSAML-VM---KLKA------NSSC 130 (882)
Q Consensus 83 ~l~~h---------------------~~~V~~lafsp-dg~~Las~~~~i~iWd~~~g~~-~~---~~~~------~~~~ 130 (882)
++-|| ..++.+++-.| .|++|+..++.+.||.+..+.. .. .+.. +...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 23332 33577888888 6777777679999998876544 21 1111 1111
Q ss_pred cceeEEEEccCCCEEEEECCCcEEEEEcc
Q 047837 131 SAITSACFSSDAKFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 131 ~~v~~l~fs~d~~~l~~~~~~~i~iwd~~ 159 (882)
..+..++|. +.++|..++..+++..+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 224444544 568888888878777653
No 376
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.97 E-value=0.32 Score=48.51 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=92.4
Q ss_pred CEEEEEEccCCCEEEEEe---CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE-c
Q 047837 522 AVTAVKFTCNGRKILSCS---ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS-I 597 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd-~ 597 (882)
.+.+.+++++++.++... ....++++... ........ ...+....|++++...+....+...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~-------g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT-------GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc-------CCccccccccCCCCEEEEEcCCCceEEEEec
Confidence 688999999999888666 33345555433 33332221 13678889999988877777666667663 3
Q ss_pred cCCceEE-EEEeccCCCCcEEEEECCCCCEEEEEe---CCCcEEEEEcc---CC------eEEEEEccCCCCeEEEEECC
Q 047837 598 AAGKLIR-SFKQAKDFGDPMKVTVDPSGSYLVCSY---SNKSICLYDFI---SG------EMVAKAMGHGEVITGVTFLP 664 (882)
Q Consensus 598 ~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~h~~~v~~l~~s~ 664 (882)
.+++... .+........|+.+.+||||..+|... .++.|.+=-+. .+ ..+.........++.+.|.+
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 3343322 222111222899999999999888655 35677776543 23 11222223456899999999
Q ss_pred CCCEEEEEeCCC
Q 047837 665 DCKHIVSVGGDG 676 (882)
Q Consensus 665 d~~~l~s~~~dg 676 (882)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998887766433
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.97 E-value=0.38 Score=49.69 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=52.9
Q ss_pred CceEEEEEecCCCEEEEEeCCC-----cEEEEEccC-CceEEEEEeccCCCCcEEEEECCCCCEEEEEe-----CCCcEE
Q 047837 569 GTVYDMDIDPTMEVVITVGQDK-----KINSFSIAA-GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY-----SNKSIC 637 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----~dg~i~ 637 (882)
..+..+.|+|....++.-+..| .-|||-+.+ |...+.+..+.....+..=-|.|||..|.--+ .+..|.
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 4678899999776665555433 236666543 44444444223334455567999998776422 244678
Q ss_pred EEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC
Q 047837 638 LYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 638 iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d 675 (882)
-+|..+++...... ......+--++||++++-=+.|
T Consensus 268 ~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 268 GYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred eeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 88888886543222 1234456668999888754544
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.95 E-value=0.042 Score=62.42 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=88.4
Q ss_pred CEEEEEEcCcceeeeeeecCCcccceeEEEEcc------CCCEEEEECCCcEEEEEcccCccceeccccCccceeecCcc
Q 047837 108 GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS------DAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKP 181 (882)
Q Consensus 108 ~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~------d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 181 (882)
..|+-.|++.|+.+...+.+.. .+|..++=.. +.+.++..+++.+..||..-... . .+....+.
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k-------~v~~~~k~ 573 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--K-------LVDSQSKQ 573 (794)
T ss_pred CceEEEecCCCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCCCC--c-------eeeccccc
Confidence 8899999999999999998852 3344443211 23456666778899999763221 0 00000000
Q ss_pred ccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEec
Q 047837 182 VNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACS 261 (882)
Q Consensus 182 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~ 261 (882)
. . .+. ...|++-+.+| +||+|+.
T Consensus 574 Y----~-----------------------~~~-----------------------------~Fs~~aTt~~G-~iavgs~ 596 (794)
T PF08553_consen 574 Y----S-----------------------SKN-----------------------------NFSCFATTEDG-YIAVGSN 596 (794)
T ss_pred c----c-----------------------cCC-----------------------------CceEEEecCCc-eEEEEeC
Confidence 0 0 000 01556666665 5999999
Q ss_pred CCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcc
Q 047837 262 NGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIH 339 (882)
Q Consensus 262 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~ 339 (882)
+|.||+||-. |+... ..+.+...+|+.+..+.||+.+.+..+..|.+++..
T Consensus 597 ~G~IRLyd~~-g~~AK--------------------------T~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 597 KGDIRLYDRL-GKRAK--------------------------TALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CCcEEeeccc-chhhh--------------------------hcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 9999999943 22111 113344567889999999999999999999999874
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.94 E-value=0.099 Score=43.02 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=62.4
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCC
Q 047837 490 YFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQG 569 (882)
Q Consensus 490 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 569 (882)
+-|++|+.|..|++|+-. ..+..+.. .+.|+.++-... ..++.+-.+|+|-+|+-. ....+....+
T Consensus 16 ~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~------- 81 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKN------- 81 (111)
T ss_pred ceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCC-------
Confidence 479999999999999844 45555553 456777777655 679999999999999763 3344443322
Q ss_pred ceEEEEEec---CC-CEEEEEeCCCcEEE
Q 047837 570 TVYDMDIDP---TM-EVVITVGQDKKINS 594 (882)
Q Consensus 570 ~v~~~~~sp---~~-~~l~~~~~d~~v~i 594 (882)
.+.++++.. || ..|++|-.+|.|-+
T Consensus 82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 82 QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 455555433 33 37888888887753
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.90 E-value=0.11 Score=42.79 Aligned_cols=101 Identities=11% Similarity=0.149 Sum_probs=68.7
Q ss_pred eEEEEEec---CC-CEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 571 VYDMDIDP---TM-EVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 571 v~~~~~sp---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
|+++++.. || ..|++|+.|..||+|+-. +.+..+. ....|+.++-... ..++.+-.+|+|.+|+- .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~---e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT---ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe---cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cce
Confidence 44555543 43 489999999999999853 5666664 5577888887766 56888889999999985 333
Q ss_pred EEEEccCCCCeEEEEECC-C--C-CEEEEEeCCCeEEE
Q 047837 647 VAKAMGHGEVITGVTFLP-D--C-KHIVSVGGDGLQRV 680 (882)
Q Consensus 647 ~~~~~~h~~~v~~l~~s~-d--~-~~l~s~~~dg~i~v 680 (882)
+-..+. ...++++++.. + | .-|++|-.+|.|-+
T Consensus 74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444443 23466666543 2 2 25888888887643
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.74 E-value=0.34 Score=49.05 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=62.1
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEEEE-cCcceeee
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWN-WRSAMLVM 122 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd-~~~g~~~~ 122 (882)
+.+..+..++||+++|+++.|. ...-||--...-...-+.-...|.+|.|+||+.+.+.+- |.|+.=+ ....+.-.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~--~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGN--FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSS--EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECccc--EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccc
Confidence 7799999999999999996532 455677542212222233567899999999998877666 8888877 23333222
Q ss_pred e--eecCCcccceeEEEEccCCCEEEEECCCcEE
Q 047837 123 K--LKANSSCSAITSACFSSDAKFIVTAGKKHLK 154 (882)
Q Consensus 123 ~--~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~ 154 (882)
. .......-.+..++|.+++...++++.|.+.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 2 1111111458999999999999998888553
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.035 Score=57.89 Aligned_cols=144 Identities=14% Similarity=0.178 Sum_probs=98.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCE-------EEEEeCCCeEEEEeCccCcc-ceeeeccc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRK-------ILSCSADRSLVVRDVVETNS-AYKISRRH 562 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-------l~s~~~dg~i~vwd~~~~~~-~~~~~~~~ 562 (882)
++..+.....++-.|+..+ +.+....-+.. |.-+.+.|+.+. -+.|-.|..|.-||.+-... .......+
T Consensus 348 il~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 5566677778888999887 78888887666 777888886532 23455577799999884443 22222222
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEc
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~ 641 (882)
.........|.+-..+| ++++|+.+|.||+||- .+...++.- .+-..+|..+..+.||++|++.+ +..+.+-++
T Consensus 426 -qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 426 -QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred -ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22333455566665555 8899999999999997 454444332 26778999999999999988775 456777765
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.71 E-value=0.0048 Score=40.05 Aligned_cols=38 Identities=29% Similarity=0.578 Sum_probs=32.7
Q ss_pred ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 601 KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 601 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
+....+. .|...+.++.|++++.++++++.|+.+++||
T Consensus 3 ~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK--GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE--ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455565 6788999999999999999999999999996
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.64 Score=45.42 Aligned_cols=113 Identities=12% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeec-cccceeEEEECCCCCEEEEEc--CEEEEEEcCcceee
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKG-HLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV 121 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~-h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~ 121 (882)
..|++++|+|+.+.|.+... .+.-.||=..+|+.++++.- .-..-..+++..+|++.++-- +.+.++.+..+..+
T Consensus 86 ~nvS~LTynp~~rtLFav~n--~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN--KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccceeeCCCcceEEEecC--CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 56999999999998888743 66778888889999988652 122345788888888887766 88888877655322
Q ss_pred ee-----ee--cCCc-ccceeEEEEccCCCEEEEECC-CcEEEEEcc
Q 047837 122 MK-----LK--ANSS-CSAITSACFSSDAKFIVTAGK-KHLKFWTIG 159 (882)
Q Consensus 122 ~~-----~~--~~~~-~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~ 159 (882)
.. +. ...+ ......++|.|....|..+-+ +-+.|+.+.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 21 11 1111 367889999997777776665 667777665
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.42 E-value=0.46 Score=46.35 Aligned_cols=211 Identities=9% Similarity=0.066 Sum_probs=111.9
Q ss_pred eeeEEeec-cccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcE
Q 047837 79 AFISELKG-HLYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHL 153 (882)
Q Consensus 79 ~~~~~l~~-h~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i 153 (882)
+.+.++.. ...-...+.|..||.++-+.+ ..|+.+|+.+|+.+.+...+.. .--..++...|.=+..+--++..
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSSSEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEEEecCCeE
Confidence 44555553 233467899988999988888 6899999999998887776531 22345555555444444455778
Q ss_pred EEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCc
Q 047837 154 KFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGL 233 (882)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~ 233 (882)
.+||..+-+... .+...+ .|
T Consensus 113 f~yd~~tl~~~~--------~~~y~~-------------------------------------------EG--------- 132 (264)
T PF05096_consen 113 FVYDPNTLKKIG--------TFPYPG-------------------------------------------EG--------- 132 (264)
T ss_dssp EEEETTTTEEEE--------EEE-SS-------------------------------------------S----------
T ss_pred EEEccccceEEE--------EEecCC-------------------------------------------cc---------
Confidence 888876544311 110000 00
Q ss_pred eeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCc
Q 047837 234 SVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNA 313 (882)
Q Consensus 234 ~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (882)
.+++ .|++.|+.......+.++|.++.+...++...... . .....
T Consensus 133 -----------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g------~----------------pv~~L 177 (264)
T PF05096_consen 133 -----------WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG------R----------------PVSNL 177 (264)
T ss_dssp ------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT------E----------------E---E
T ss_pred -----------eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC------E----------------ECCCc
Confidence 3444 66778888888889999999888777666432110 0 11122
Q ss_pred EEEeecCCCeEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee
Q 047837 314 IACQFSTSEKLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS 390 (882)
Q Consensus 314 ~~~~~s~~~~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~ 390 (882)
..+.|. +|.+.+= -....|...|..+++...... +.+- ...+........-..-.+.+|+.+..+.+++||=
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iD-ls~L---~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWID-LSGL---RPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE--HHH---HHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEE-hhHh---hhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 334554 5665553 336667777777765433211 0000 0000000000011455778999866677777763
No 386
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.41 E-value=1.1 Score=44.16 Aligned_cols=73 Identities=25% Similarity=0.466 Sum_probs=49.4
Q ss_pred cEEEEEccCCceEEEEEeccCCCCcEEEEECC------CCCEEEEEeCCCcEEEEEccCCeEEEEEccCCC------CeE
Q 047837 591 KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP------SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGE------VIT 658 (882)
Q Consensus 591 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp------dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~ 658 (882)
.|-+||+. |.+++++...+.-...+.|+..| .|.+|+---.||+|..||..+|+.+..+....+ ..+
T Consensus 223 ~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLW 301 (336)
T TIGR03118 223 YVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLW 301 (336)
T ss_pred eEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeE
Confidence 44444443 55666665445556667777765 467787777899999999999998887765433 455
Q ss_pred EEEECC
Q 047837 659 GVTFLP 664 (882)
Q Consensus 659 ~l~~s~ 664 (882)
.|.|-.
T Consensus 302 gL~fGn 307 (336)
T TIGR03118 302 SLTFGN 307 (336)
T ss_pred EeeeCC
Confidence 667754
No 387
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.38 E-value=1.6 Score=47.68 Aligned_cols=179 Identities=9% Similarity=0.052 Sum_probs=94.6
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCC-----------eEEEEeCccCccceee-eccceecc
Q 047837 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR-----------SLVVRDVVETNSAYKI-SRRHQQLA 566 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~-~~~~~~~~ 566 (882)
..++++|+.++......+... ....+.|.+|++.|+....+. .|+.|++.+......+ .....
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~--- 224 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPD--- 224 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TT---
T ss_pred EEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecC---
Confidence 469999999883333333322 122399999988887655333 3778888765443222 21111
Q ss_pred cCCceEEEEEecCCCEEEEEeCC----CcEEEEEccCC----ceEEEEEeccCCCCcEEEEECCCCCEEEEEe---CCCc
Q 047837 567 SQGTVYDMDIDPTMEVVITVGQD----KKINSFSIAAG----KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY---SNKS 635 (882)
Q Consensus 567 ~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---~dg~ 635 (882)
.......+..++|+++|+..... ..+.+.|+..+ .....+. .....+....-+..+.+++... .++.
T Consensus 225 ~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~--~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~ 302 (414)
T PF02897_consen 225 EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS--PREDGVEYYVDHHGDRLYILTNDDAPNGR 302 (414)
T ss_dssp CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE--ESSSS-EEEEEEETTEEEEEE-TT-TT-E
T ss_pred CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe--CCCCceEEEEEccCCEEEEeeCCCCCCcE
Confidence 11126688999999988765433 35788888764 2333333 2333333333222444444332 3457
Q ss_pred EEEEEccCCe---EEEEEccCCCCeEEEEECCCCCEEEEEe-CCC--eEEEEeCC
Q 047837 636 ICLYDFISGE---MVAKAMGHGEVITGVTFLPDCKHIVSVG-GDG--LQRVKEKY 684 (882)
Q Consensus 636 i~iwd~~~~~---~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg--~i~vwd~~ 684 (882)
|.-.++.+.. ....+..|...+.-..+...+.+|+... .++ .|+++++.
T Consensus 303 l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 303 LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 7777877654 2334555655433333333455555544 444 68889888
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.38 E-value=1.7 Score=46.06 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=57.4
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEE-EEE-CCC----------------CCEEE-EE
Q 047837 612 FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITG-VTF-LPD----------------CKHIV-SV 672 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~-s~d----------------~~~l~-s~ 672 (882)
...+.+++.+|++++.|+...-|.|.++|+.++..++.++|..+.=.. +.. .+. ..+|+ -+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 345778999999999999988899999999999998888876543211 111 111 11233 34
Q ss_pred eCCCeEEEEeCCCCCCCccc
Q 047837 673 GGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 673 ~~dg~i~vwd~~~~~~~~~~ 692 (882)
-.-|.|.||.+..+.....+
T Consensus 387 prRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred ccCCeEEEEecCCCCEEEEE
Confidence 57889999999887766544
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.30 E-value=0.99 Score=42.34 Aligned_cols=136 Identities=16% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCEEEEEEccCCCEEEEEeCC---------CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEE-EEeCCC
Q 047837 521 AAVTAVKFTCNGRKILSCSAD---------RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVI-TVGQDK 590 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~ 590 (882)
.+..+-..+|+|++++-.-.| |.++.|-.. .....+.. .-+.-+.++|+.+.+.+. +-+.+-
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~------~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWN------CVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeeh------hccCCccccccccCcEEEEEccCce
Confidence 455666788999985532222 334444332 11111111 112446788998877654 445667
Q ss_pred cEEEEE--ccCCce-----EEEEEec--cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEE
Q 047837 591 KINSFS--IAAGKL-----IRSFKQA--KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVT 661 (882)
Q Consensus 591 ~v~iwd--~~~~~~-----~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 661 (882)
+|.-|| ..+|.. +..++.. ...-..-.+++..+|.+.++....++|...|..+|+.+.++.-....|+++|
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 887787 555543 3333310 1222344577788899999998999999999999999999998899999999
Q ss_pred ECC
Q 047837 662 FLP 664 (882)
Q Consensus 662 ~s~ 664 (882)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 954
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.013 Score=66.32 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=77.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEE
Q 047837 580 MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITG 659 (882)
Q Consensus 580 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 659 (882)
+..++.|+..|.+-..|+... +-.-.....-.++|++++|+.||++++.|-.+|.|.+||+..++.++.+..|..+.++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 457888888889988888743 1111121245679999999999999999999999999999999999988877776666
Q ss_pred EE---ECCCCCEEEEEeCCCeEEEEeCC
Q 047837 660 VT---FLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 660 l~---~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+- +..++..++++..-|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 54 4456667888887775 67653
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.27 E-value=2.2 Score=46.04 Aligned_cols=145 Identities=14% Similarity=0.244 Sum_probs=93.6
Q ss_pred cccCCCCCeEEEeeceEEEEEEC--CCCceEE---EEEecCCCCCeEEEEEcCCC-----CEEEEeecCCCCeEEEEECC
Q 047837 7 IKKPDSSSKCAYVAGCVLVVYDV--DSSTQSH---LMVSHRMPKPLCCVAMSRDG-----RYVAAGESGPQPAVLVWDCA 76 (882)
Q Consensus 7 ~~~pd~~~~~~~~~~~~v~vwd~--~~~~~~~---~l~~h~~~~~I~~va~spdg-----~~la~g~~~~d~~I~vwd~~ 76 (882)
|.||.-. +++.-|+.|++-++ ..|+..+ ...|.- ..|..+.|+|-+ .+||+-- ...|.||.+.
T Consensus 18 AiHPvhG--laWTDGkqVvLT~L~l~~gE~kfGds~viGqF--EhV~GlsW~P~~~~~~paLLAVQH---kkhVtVWqL~ 90 (671)
T PF15390_consen 18 AIHPVHG--LAWTDGKQVVLTDLQLHNGEPKFGDSKVIGQF--EHVHGLSWAPPCTADTPALLAVQH---KKHVTVWQLC 90 (671)
T ss_pred hhccccc--eEecCCCEEEEEeeeeeCCccccCCccEeecc--ceeeeeeecCcccCCCCceEEEec---cceEEEEEec
Confidence 6788844 89999999999887 3343221 112322 458899999853 5777752 5689999976
Q ss_pred -----CceeeEEeeccc---cc--eeEEEECCCCCEEEEEc-CEE-EEEEcCcc--eeeeeeecCCcccceeEEEEccCC
Q 047837 77 -----NLAFISELKGHL---YG--VECIAFSPDGEHLVTVG-GYI-YLWNWRSA--MLVMKLKANSSCSAITSACFSSDA 142 (882)
Q Consensus 77 -----t~~~~~~l~~h~---~~--V~~lafspdg~~Las~~-~~i-~iWd~~~g--~~~~~~~~~~~~~~v~~l~fs~d~ 142 (882)
+.+.+..-..+- -+ -..+.|+|....|+... ..+ .+.++... +....++.. +.|.+.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~---G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS---GLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC---ceEEEEEecCcC
Confidence 233333222111 11 24678999999998877 444 44555433 333444443 899999999999
Q ss_pred CEEEEECCC--cEEEEEcccC
Q 047837 143 KFIVTAGKK--HLKFWTIGSS 161 (882)
Q Consensus 143 ~~l~~~~~~--~i~iwd~~~~ 161 (882)
+.|+++-.. +-.+||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 999888654 5677876543
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.19 E-value=0.25 Score=49.22 Aligned_cols=110 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCEEEEeec-CCCCeEEEEECCCceeeEE-eeccccceeEEEECCCCCEEEEEc--CEEEEE-EcCccee
Q 047837 46 PLCCVAMSRDGRYVAAGES-GPQPAVLVWDCANLAFISE-LKGHLYGVECIAFSPDGEHLVTVG--GYIYLW-NWRSAML 120 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~-~~d~~I~vwd~~t~~~~~~-l~~h~~~V~~lafspdg~~Las~~--~~i~iW-d~~~g~~ 120 (882)
.+...++|+||+.+|.... +....++++... ..... +.+. .+..-.|++++...+... ...+++ +..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6899999999998887751 123356666543 33233 2333 788899999988777666 555555 3334433
Q ss_pred e-eeeecCCcccceeEEEEccCCCEEEEEC----CCcEEEEEcc
Q 047837 121 V-MKLKANSSCSAITSACFSSDAKFIVTAG----KKHLKFWTIG 159 (882)
Q Consensus 121 ~-~~~~~~~~~~~v~~l~fs~d~~~l~~~~----~~~i~iwd~~ 159 (882)
. ..+........|..+.+||||..++... ++.|.+=-+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2 2233222112899999999999888775 3566665553
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.16 E-value=1.8 Score=43.97 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=81.8
Q ss_pred eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 047837 516 IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSF 595 (882)
Q Consensus 516 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw 595 (882)
...-...+..+..++||++++++.......-||.-. ....... .....+|..|.|.|++.+.+++ +.|.|++=
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEc----cCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence 344557788999999999999888777666777542 1122111 1123589999999998877755 88888887
Q ss_pred Ec-cCCceEEE-EE-eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc---cCCCCeEEEEECCCCCEE
Q 047837 596 SI-AAGKLIRS-FK-QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAM---GHGEVITGVTFLPDCKHI 669 (882)
Q Consensus 596 d~-~~~~~~~~-~~-~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~d~~~l 669 (882)
+. ...+.-.. +. .....-.+..++|.+++...|+|+. |.+ +...+.|+--...+ .-......+.|.++.+ -
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-g 289 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-G 289 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-E
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-e
Confidence 72 22222111 11 0012334789999999888887764 433 34555665444433 2345678888976644 4
Q ss_pred EEEeCCCeEEEE
Q 047837 670 VSVGGDGLQRVK 681 (882)
Q Consensus 670 ~s~~~dg~i~vw 681 (882)
...+.+|.+.-|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 446778877654
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.11 Score=54.47 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred CCCEEE-EEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCE-------EEEEeCCCcEEEEEccCCce
Q 047837 531 NGRKIL-SCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEV-------VITVGQDKKINSFSIAAGKL 602 (882)
Q Consensus 531 ~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-------l~~~~~d~~v~iwd~~~~~~ 602 (882)
+.++|+ ++.....++-.|++.++........ ..|.-+.+.|+.+. -+.|-.|..|.-||.+-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~-------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFE-------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeecc-------CCcceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence 333433 3333344666677766554443222 23666777776542 35566788999999874222
Q ss_pred --EEEEE--eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE-EEEEccCCCCeEEEEECCCCCEEEEEeCCCe
Q 047837 603 --IRSFK--QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM-VAKAMGHGEVITGVTFLPDCKHIVSVGGDGL 677 (882)
Q Consensus 603 --~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~ 677 (882)
+...+ .........|.+-..+| ++|+|+.+|.||+||- .+.. -..+++...+|..+..+.||++|+..+ +..
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty 493 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY 493 (644)
T ss_pred ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence 11111 01122334455555455 8999999999999997 5443 345778889999999999999988544 566
Q ss_pred EEEEeCC
Q 047837 678 QRVKEKY 684 (882)
Q Consensus 678 i~vwd~~ 684 (882)
+.+-++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 7776653
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=0.02 Score=53.19 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=81.2
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCce
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTV 571 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 571 (882)
+..-+.+|.|.-++++......+....|...-.-+ .-+..++.|+.+|.|++|................ ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~----e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE----ESID 105 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhccc----ccce
Confidence 44456677787777765322222222233321111 2456788999999999998873222211111110 1122
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCC-CCcEEEEECCCCCEEEEE--eCCCcEEEEEcc
Q 047837 572 YDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDF-GDPMKVTVDPSGSYLVCS--YSNKSICLYDFI 642 (882)
Q Consensus 572 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~--~~dg~i~iwd~~ 642 (882)
..+.-..++.+..+++.|+.|+.|++.-++.+...- .|. .+......+..+++++.+ +.|..++.|++.
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g--~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG--QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeec--cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 233333455688899999999999999888776665 444 444444445555555555 556666666654
No 396
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.95 E-value=2.6 Score=44.05 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee---eEEe----eccccceeEEEECCC----CCEEEEEc-------
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF---ISEL----KGHLYGVECIAFSPD----GEHLVTVG------- 107 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~---~~~l----~~h~~~V~~lafspd----g~~Las~~------- 107 (882)
.-+.|+|.|||+++++ .. .|.|.+++ .++.. +..+ .........++|+|+ +.+.++..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~--~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ER--SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTSCEEEE-ET--TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCCcEEEE-eC--CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 4678999999988776 33 78999999 44443 3333 234567899999995 33333322
Q ss_pred ---CEEEEEEcCcc-------e-eeeeeec-CCcccceeEEEEccCCCEEEEECCC
Q 047837 108 ---GYIYLWNWRSA-------M-LVMKLKA-NSSCSAITSACFSSDAKFIVTAGKK 151 (882)
Q Consensus 108 ---~~i~iWd~~~g-------~-~~~~~~~-~~~~~~v~~l~fs~d~~~l~~~~~~ 151 (882)
..|.-|....+ + ++..+.. ......-..|+|.|||.+.++.+++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 24555555433 1 1222222 1112456679999999888888873
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.83 E-value=0.036 Score=37.80 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee
Q 047837 44 PKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI 81 (882)
Q Consensus 44 ~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~ 81 (882)
+..|.+++|+|...+||.|+. +|.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~--~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTE--DGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEEC--CCeEEEEEC-CCcCc
Confidence 468999999999999999976 889999998 55543
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.81 E-value=1.7 Score=40.84 Aligned_cols=191 Identities=15% Similarity=0.197 Sum_probs=102.8
Q ss_pred ceEEEEEECCCCceEE-EEEecCCCCCeEEEEEcCCC--CEEEEeecCCCCeEEEEE--CCCceeeEEeec-----cccc
Q 047837 21 GCVLVVYDVDSSTQSH-LMVSHRMPKPLCCVAMSRDG--RYVAAGESGPQPAVLVWD--CANLAFISELKG-----HLYG 90 (882)
Q Consensus 21 ~~~v~vwd~~~~~~~~-~l~~h~~~~~I~~va~spdg--~~la~g~~~~d~~I~vwd--~~t~~~~~~l~~-----h~~~ 90 (882)
.+.|.-||.+.++..+ .+++.. ...+.+--.+ +-.|++. |..-.|.=|| .+.-...+++.. .+.+
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~----~ag~ilpv~~~~q~~~v~~-G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR 110 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP----SAGFILPVEGGPQEFAVGC-GSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNR 110 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc----ceeEEEEecCCCceEEEee-cceEEEEEcccccceeeeeeeccccCchHHhcc
Confidence 4456668888765443 233322 3344443222 2333332 2223455577 334445555321 2345
Q ss_pred eeEEEECCCCCEEEEEc-----------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCC--cEEEEE
Q 047837 91 VECIAFSPDGEHLVTVG-----------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKK--HLKFWT 157 (882)
Q Consensus 91 V~~lafspdg~~Las~~-----------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~--~i~iwd 157 (882)
...--.+|+|+|.+-.- |.++.|-.. ..+..+...- +--..++|+.|.+.+.....- .|.-||
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v--~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCV--GISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhc--cCCccccccccCcEEEEEccCceEEeeee
Confidence 55667789999954221 455555432 2222222221 344678999998888877653 566688
Q ss_pred --cccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCcee
Q 047837 158 --IGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSV 235 (882)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~ 235 (882)
..++.....+. ++.+...
T Consensus 187 yd~~tG~~snr~~------------------------------------------------i~dlrk~------------ 206 (310)
T KOG4499|consen 187 YDCPTGDLSNRKV------------------------------------------------IFDLRKS------------ 206 (310)
T ss_pred cCCCcccccCcce------------------------------------------------eEEeccC------------
Confidence 44444311111 0000000
Q ss_pred eeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccc
Q 047837 236 TKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHY 281 (882)
Q Consensus 236 ~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 281 (882)
++.......++++..+|.+.++.-..|+|...|..+|+.+.++.+
T Consensus 207 -~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl 251 (310)
T KOG4499|consen 207 -QPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL 251 (310)
T ss_pred -CCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence 000011114566777899888888999999999999999988763
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.81 E-value=0.59 Score=50.12 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=93.7
Q ss_pred CCEEEEEEccCCCEEEEEe---CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC----CCEEEEEeCCCcEE
Q 047837 521 AAVTAVKFTCNGRKILSCS---ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT----MEVVITVGQDKKIN 593 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~~d~~v~ 593 (882)
.++..++|. ||+.++-.. .+|.+++=|-. .++....|..+.|.|- -..+++.-....|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~-------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK-------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc-------------EeeccceeeeeeecCcccCCCCceEEEeccceEE
Confidence 467889997 777666432 23333332211 1222247899999995 33566667778999
Q ss_pred EEEcc-----CCceEEEEEec-cC--CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC--eEEEEEccCCCCeEEEEEC
Q 047837 594 SFSIA-----AGKLIRSFKQA-KD--FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG--EMVAKAMGHGEVITGVTFL 663 (882)
Q Consensus 594 iwd~~-----~~~~~~~~~~~-~~--~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s 663 (882)
+|.+. .++.+..-..+ .. .--...+.|+|....|++-.....-.++++... .....+. -.+.|.+.+|.
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT 164 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWT 164 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEec
Confidence 99975 23443332211 11 112456889999999887666555556666532 3334454 56899999999
Q ss_pred CCCCEEEEEeCCC-eEEEEeCCC
Q 047837 664 PDCKHIVSVGGDG-LQRVKEKYG 685 (882)
Q Consensus 664 ~d~~~l~s~~~dg-~i~vwd~~~ 685 (882)
+||+.|+.+-... .-+|||-..
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCch
Confidence 9999988775432 467888643
No 400
>PHA02713 hypothetical protein; Provisional
Probab=95.78 E-value=0.2 Score=56.45 Aligned_cols=181 Identities=9% Similarity=0.082 Sum_probs=90.8
Q ss_pred EEEEEcCC------CcEEEEEcCCCc-eeEEEeecCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEeCccCccceee
Q 047837 491 FLASGGRD------RTIHLYDVKRNF-DLIESIDDHSAAVTAVKFTCNGRKILSCSADR-----SLVVRDVVETNSAYKI 558 (882)
Q Consensus 491 ~l~~g~~d------g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~ 558 (882)
+.+.||.+ ..+..||..++. ..+..+.........+.+ +|+..+.|+.++ .+..||..+.. ...
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~--W~~ 381 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK--WKM 381 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe--EEE
Confidence 56666643 347788877651 112112111112222222 777778888654 47888877432 211
Q ss_pred eccceecccCCceEEEEEecCCCEEEEEeCCC-----------------------cEEEEEccCCceE--EEEEeccCCC
Q 047837 559 SRRHQQLASQGTVYDMDIDPTMEVVITVGQDK-----------------------KINSFSIAAGKLI--RSFKQAKDFG 613 (882)
Q Consensus 559 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----------------------~v~iwd~~~~~~~--~~~~~~~~~~ 613 (882)
..... ........+ .-+++..+.|+.++ .+..||..+.+-. ..+. ..
T Consensus 382 ~~~mp--~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~----~~ 453 (557)
T PHA02713 382 LPDMP--IALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW----TG 453 (557)
T ss_pred CCCCC--cccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC----cc
Confidence 11100 000111112 23677777777542 4777887765432 2221 11
Q ss_pred CcEEEEECCCCCEEEEEeCC------CcEEEEEccC-Ce--EEEEEccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEe
Q 047837 614 DPMKVTVDPSGSYLVCSYSN------KSICLYDFIS-GE--MVAKAMGHGEVITGVTFLPDCKHIVSVGGDG--LQRVKE 682 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg--~i~vwd 682 (882)
.....+..-+|++.+.|+.+ ..+..||..+ .+ .+..+.........+.+ +|++.++||.|+ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 11111222346777777654 2467899887 43 33444333333333333 788888999888 555566
Q ss_pred CCC
Q 047837 683 KYG 685 (882)
Q Consensus 683 ~~~ 685 (882)
+.+
T Consensus 532 ~~~ 534 (557)
T PHA02713 532 VYT 534 (557)
T ss_pred ccc
Confidence 543
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=1.2 Score=43.60 Aligned_cols=165 Identities=13% Similarity=0.131 Sum_probs=108.0
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 517 DDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 517 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
.+-...+.++.|+|+.+.|++......-.++=-..+....++.... ......+.+..++.++++--.++.+.++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 3445569999999999999988877765555444444444443222 13455678888888888888889999988
Q ss_pred ccCCceEEEEE-------eccC-CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-E--EEEEccC-------CCCeE
Q 047837 597 IAAGKLIRSFK-------QAKD-FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE-M--VAKAMGH-------GEVIT 658 (882)
Q Consensus 597 ~~~~~~~~~~~-------~~~~-~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~h-------~~~v~ 658 (882)
+.....+..+. ...+ ....-.++|+|..+.|..+-+-.-+.||.+..+. . ++....+ -..|.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 87653322221 1122 4567789999999999988888888888876432 1 1111112 23567
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEeCCCC
Q 047837 659 GVTFLP-DCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 659 ~l~~s~-d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
++.|.+ .+..|+-+.+++.+.-.|..+.
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 788876 4556666667777777776654
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.032 Score=63.23 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc-eeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeee
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL-AFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVM 122 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~-~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~ 122 (882)
.+..++.--.+.++|.|+. .|.|...|+... .+...-..-+++|++++|+.||++|+.|- |.|.+||...++.++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts--~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTS--HGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred CcceeeeeeeeeeEEEEcC--chhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 3444444445668888876 667888877542 22222233568999999999999998887 999999999999999
Q ss_pred eeecCCcccceeEEE---EccCCCEEEEECCCcEEEEEcc
Q 047837 123 KLKANSSCSAITSAC---FSSDAKFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 123 ~~~~~~~~~~v~~l~---fs~d~~~l~~~~~~~i~iwd~~ 159 (882)
.+..+. .+.+++- +..++..+.++..+. .+|.+.
T Consensus 167 ~i~e~~--ap~t~vi~v~~t~~nS~llt~D~~G-sf~~lv 203 (1206)
T KOG2079|consen 167 VITEHG--APVTGVIFVGRTSQNSKLLTSDTGG-SFWKLV 203 (1206)
T ss_pred eeeecC--CccceEEEEEEeCCCcEEEEccCCC-ceEEEE
Confidence 888766 4444433 334445555554432 267664
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.56 E-value=0.046 Score=37.30 Aligned_cols=36 Identities=6% Similarity=0.018 Sum_probs=31.2
Q ss_pred cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 610 KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 610 ~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
.....|..++|+|...+||.+..+|.|.+|.+ +++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 34567999999999999999999999999998 5554
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.55 E-value=3.7 Score=47.37 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=38.4
Q ss_pred CeEEEeeceEEEEEECCCCceEEE-EEe-------------------cCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEE
Q 047837 14 SKCAYVAGCVLVVYDVDSSTQSHL-MVS-------------------HRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVW 73 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~~~~~-l~~-------------------h~~~~~I~~va~spdg~~la~g~~~~d~~I~vw 73 (882)
+.++...|+.+.+||......... +.. ....-.|..|.++|+|++||..+ ..+ |.|-
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G--~~~-v~V~ 110 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVG--PRG-VVVL 110 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEc--CCc-EEEE
Confidence 578888899999999876554222 110 00113588899999999999883 343 5554
Q ss_pred EC
Q 047837 74 DC 75 (882)
Q Consensus 74 d~ 75 (882)
.+
T Consensus 111 ~L 112 (717)
T PF10168_consen 111 EL 112 (717)
T ss_pred Ee
Confidence 44
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.21 E-value=3.4 Score=40.49 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=104.2
Q ss_pred EEEEEcCCC--cEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGRDR--TIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~dg--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
++-+.+.-| .|+.+|+.++.......-...----.++.. +++.....=.++...+||..+.+...++.-.
T Consensus 58 LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~------- 129 (264)
T PF05096_consen 58 LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP------- 129 (264)
T ss_dssp EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-------
T ss_pred EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecC-------
Confidence 566666555 688899988733322222222222334443 3344445556889999999865544433221
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCC---CcEEEEECCCCCEEEEEeCCCcEEEEEccCCe
Q 047837 569 GTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFG---DPMKVTVDPSGSYLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~ 645 (882)
+.=..++ .|++.|+.......++++|.++.+..+.+....... .++.+.|- +|...|=.-....|..-|..+|+
T Consensus 130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 2444555 567777777777899999999888888776443333 34556665 67777766677789999999999
Q ss_pred EEEEEcc------------C---CCCeEEEEECCCCCEEEEEe
Q 047837 646 MVAKAMG------------H---GEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 646 ~~~~~~~------------h---~~~v~~l~~s~d~~~l~s~~ 673 (882)
++..+.- + ..-.+.+++.|+.+.|...|
T Consensus 207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8877621 1 24578999988777666555
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.32 Score=55.98 Aligned_cols=149 Identities=14% Similarity=0.085 Sum_probs=96.2
Q ss_pred CCEEEEEEccCCCEEEEE--eCCCeEEEEeCccCccceeee----ccc-eecccCCceEEEEEecCCC-EEEEEeCCCcE
Q 047837 521 AAVTAVKFTCNGRKILSC--SADRSLVVRDVVETNSAYKIS----RRH-QQLASQGTVYDMDIDPTME-VVITVGQDKKI 592 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~----~~~-~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v 592 (882)
-+|..+...+|+...++. +.+-.|..||+++-....... ..+ ..........++.|.|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345666677787665543 344478999997543222110 001 1111223566788888644 45666789999
Q ss_pred EEEEccCCce-EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc----CCCCeEEEEECCCCC
Q 047837 593 NSFSIAAGKL-IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG----HGEVITGVTFLPDCK 667 (882)
Q Consensus 593 ~iwd~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~s~d~~ 667 (882)
++..+..... +..+ .-....++++|+|.|+.+++|...|++.-|.. +++....+.+ ....|.+|+|-....
T Consensus 181 ~V~~~~~~~~~v~s~---p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF---PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhccc---CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 9887753322 2222 34567899999999999999999999999875 4554444433 236899999988887
Q ss_pred EEEEEe
Q 047837 668 HIVSVG 673 (882)
Q Consensus 668 ~l~s~~ 673 (882)
+|++-+
T Consensus 257 flvvy~ 262 (1405)
T KOG3630|consen 257 FLVVYG 262 (1405)
T ss_pred EEEEec
Confidence 877643
No 407
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.78 E-value=2 Score=44.85 Aligned_cols=163 Identities=15% Similarity=0.230 Sum_probs=94.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCe------EEEEeCccCc---cceeeeccceecccCC--------ceEEEEEecCCCEE
Q 047837 521 AAVTAVKFTCNGRKILSCSADRS------LVVRDVVETN---SAYKISRRHQQLASQG--------TVYDMDIDPTMEVV 583 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~~dg~------i~vwd~~~~~---~~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~l 583 (882)
+.+..|.+.+++..+++.+.+|. +..+++.... ...............+ ...++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55778888865556666676776 5555554310 1111111111111111 34478888888888
Q ss_pred EEEeCC------CcEEEEEccCCceEEEEEe-------------ccCCCCcEEEEECCCCCEEEEEeC-----CC--c--
Q 047837 584 ITVGQD------KKINSFSIAAGKLIRSFKQ-------------AKDFGDPMKVTVDPSGSYLVCSYS-----NK--S-- 635 (882)
Q Consensus 584 ~~~~~d------~~v~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~spdg~~l~~~~~-----dg--~-- 635 (882)
++.-.+ ..|+.++.. |+.+..+.. .......-+|+++|||+.|.++.+ |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887777 788888877 776655521 123456778999999996665532 22 1
Q ss_pred -----EEE--EEccC-CeE----EEEEcc-----CCCCeEEEEECCCCCEEEEEe-----CCCeEEEEeCC
Q 047837 636 -----ICL--YDFIS-GEM----VAKAMG-----HGEVITGVTFLPDCKHIVSVG-----GDGLQRVKEKY 684 (882)
Q Consensus 636 -----i~i--wd~~~-~~~----~~~~~~-----h~~~v~~l~~s~d~~~l~s~~-----~dg~i~vwd~~ 684 (882)
++| ||..+ ++. ...+.. ....|..+.+-+++++|+.-= ....++|+.+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 445 45444 322 223322 356788999999999776421 23455555553
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.77 E-value=0.98 Score=50.89 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=95.0
Q ss_pred EEEEEcCC------CcEEEEEcCCCc-eeEEEeecCCCCEEEEEEccCCCEEEEEeCCCe-----EEEEeCccCccceee
Q 047837 491 FLASGGRD------RTIHLYDVKRNF-DLIESIDDHSAAVTAVKFTCNGRKILSCSADRS-----LVVRDVVETNSAYKI 558 (882)
Q Consensus 491 ~l~~g~~d------g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~ 558 (882)
+.++||.| .++..||...+. ..+..+...........+ +|...|+|+.||. +..||..+.+ ...
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~ 410 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTP 410 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--ccc
Confidence 67788877 457788877642 222222222222222222 7888899998864 6677776432 111
Q ss_pred eccceecccCCceEEE-EEecCCCEEEEEeCCC------cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEe
Q 047837 559 SRRHQQLASQGTVYDM-DIDPTMEVVITVGQDK------KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY 631 (882)
Q Consensus 559 ~~~~~~~~~~~~v~~~-~~sp~~~~l~~~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 631 (882)
..... ...... ...-+|+..++|+.++ ++..||..+++-...-.-........ + -.-++.+.+.|+
T Consensus 411 va~m~-----~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~-a~~~~~iYvvGG 483 (571)
T KOG4441|consen 411 VAPML-----TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-V-AVLNGKIYVVGG 483 (571)
T ss_pred cCCCC-----cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-E-EEECCEEEEECC
Confidence 11110 011122 2233677778888654 57888887765332211001112222 2 223577888888
Q ss_pred CCC-----cEEEEEccCCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCC
Q 047837 632 SNK-----SICLYDFISGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGDG-----LQRVKEKY 684 (882)
Q Consensus 632 ~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~dg-----~i~vwd~~ 684 (882)
.|+ +|..||..+.+.... +......+-.... +++..+.|+.|| +|..||..
T Consensus 484 ~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 484 FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred ccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCC
Confidence 776 377788887654332 2222233322333 666777788776 45555543
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.65 E-value=12 Score=43.83 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=92.9
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCE-------------EEEEEcc--CCCEEEEEeC----------CCeEE
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAV-------------TAVKFTC--NGRKILSCSA----------DRSLV 545 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v-------------~~~~~s~--~~~~l~s~~~----------dg~i~ 545 (882)
.++.++.|+.+.-.|..++. ..-.+. ....| ..+.-.| .+..+++++. +|.|+
T Consensus 262 rV~~~T~Dg~LiALDA~TGk-~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGK-LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred EEEEecCCCeEEEEECCCCC-EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 67778888888888888873 332221 11111 0111122 2335555542 68899
Q ss_pred EEeCccCccceeeeccceecc-----------cCCce-EEEEEecCCCEEEEEe------------------CCCcEEEE
Q 047837 546 VRDVVETNSAYKISRRHQQLA-----------SQGTV-YDMDIDPTMEVVITVG------------------QDKKINSF 595 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~-----------~~~~v-~~~~~sp~~~~l~~~~------------------~d~~v~iw 595 (882)
-+|.++++...+......... ....+ ..++++++..+++.+. ..+.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 999999988777653211000 00111 2345555544444322 12467778
Q ss_pred EccCCceEEEEEeccCCC-------CcEEEEECC-CCC---EEEEEeCCCcEEEEEccCCeEEEEEc
Q 047837 596 SIAAGKLIRSFKQAKDFG-------DPMKVTVDP-SGS---YLVCSYSNKSICLYDFISGEMVAKAM 651 (882)
Q Consensus 596 d~~~~~~~~~~~~~~~~~-------~v~~~~~sp-dg~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 651 (882)
|+++|+..-.++...|+. ...-+.+.. +|+ .++.+..+|.++++|.++|+.+...+
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 899999988887433321 122233333 564 78899999999999999999887643
No 410
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.62 E-value=1.7 Score=46.15 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=85.5
Q ss_pred cccCCCCCeEEEeece-EEEEEECCCCc-eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-----
Q 047837 7 IKKPDSSSKCAYVAGC-VLVVYDVDSST-QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA----- 79 (882)
Q Consensus 7 ~~~pd~~~~~~~~~~~-~v~vwd~~~~~-~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~----- 79 (882)
...+|+. .+++...+ .++-||-.... +.... .. ...++++++.+++.++.++. .| -.+|....++
T Consensus 245 ~~~~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~~-~~--~~~l~~v~~~~dg~l~l~g~---~G-~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 245 NRSPDGD-YVAVSSRGNFYLTWEPGQPYWQPHNR-AS--ARRIQNMGWRADGGLWLLTR---GG-GLYVSKGTGLTEEDF 316 (398)
T ss_pred EEcCCCC-EEEEECCccEEEecCCCCcceEEecC-CC--ccceeeeeEcCCCCEEEEeC---Cc-eEEEecCCCCccccc
Confidence 4456654 55555544 33344432111 21221 22 26799999999999998874 33 3455555654
Q ss_pred eeEEeec--cccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeee-cCCcccceeEEEEccCCCEEEEECCCcEEE
Q 047837 80 FISELKG--HLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLK-ANSSCSAITSACFSSDAKFIVTAGKKHLKF 155 (882)
Q Consensus 80 ~~~~l~~--h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~-~~~~~~~v~~l~fs~d~~~l~~~~~~~i~i 155 (882)
....+.- -...+..+.|.+|+..+++|. |.+.... ..|+.=.... ...-....+.+.|.++++.++++.+|.|.-
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 2232221 223589999999999999888 7766664 4444323222 121126788999999999999888887654
Q ss_pred E
Q 047837 156 W 156 (882)
Q Consensus 156 w 156 (882)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 411
>PHA02713 hypothetical protein; Provisional
Probab=94.54 E-value=1.2 Score=50.47 Aligned_cols=73 Identities=7% Similarity=0.061 Sum_probs=44.0
Q ss_pred cCCCEEEEEeCC------CcEEEEEccC-Cc--eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC--cEEEEEccCCeE
Q 047837 578 PTMEVVITVGQD------KKINSFSIAA-GK--LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK--SICLYDFISGEM 646 (882)
Q Consensus 578 p~~~~l~~~~~d------~~v~iwd~~~-~~--~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg--~i~iwd~~~~~~ 646 (882)
-+++..+.|+.+ ..+..||..+ .+ .+..+. ........+++ +|++.++|+.++ .+-.||..+.+.
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE--SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC--cccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 356666777654 2467899886 33 333332 22222333333 688889998888 788888888765
Q ss_pred EEEEccCC
Q 047837 647 VAKAMGHG 654 (882)
Q Consensus 647 ~~~~~~h~ 654 (882)
......|+
T Consensus 538 ~~~~~~~~ 545 (557)
T PHA02713 538 NHICHQHS 545 (557)
T ss_pred cchhhhcC
Confidence 54444454
No 412
>PHA03098 kelch-like protein; Provisional
Probab=94.45 E-value=1.1 Score=50.83 Aligned_cols=181 Identities=12% Similarity=0.060 Sum_probs=82.6
Q ss_pred EEEEEcCCC------cEEEEEcCCCceeEE--EeecCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEeCccCcccee
Q 047837 491 FLASGGRDR------TIHLYDVKRNFDLIE--SIDDHSAAVTAVKFTCNGRKILSCSAD-----RSLVVRDVVETNSAYK 557 (882)
Q Consensus 491 ~l~~g~~dg------~v~iwd~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 557 (882)
+++.|+.++ .+..||..++ .... .+.........+.+ +++.++.|+.+ ..+..||..+.. ..
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~ 371 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK--WR 371 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc--ee
Confidence 556665432 4677887664 2211 11111111222222 67777777765 346777776432 11
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeCC------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEe
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQD------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY 631 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 631 (882)
...... . ......+..-+++..+.|+.+ ..+..||..+++-...-......... + +...++++.+.|+
T Consensus 372 ~~~~lp---~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG 445 (534)
T PHA03098 372 EEPPLI---F-PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGG 445 (534)
T ss_pred eCCCcC---c-CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECC
Confidence 111100 0 011111222356677777632 35888998765432211100111111 2 2223566667765
Q ss_pred CC--------CcEEEEEccCCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCC
Q 047837 632 SN--------KSICLYDFISGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGD-----GLQRVKEKY 684 (882)
Q Consensus 632 ~d--------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~d-----g~i~vwd~~ 684 (882)
.+ ..+.+||..+++.... +.........+.+ +++.++.||.+ ..+.+||..
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence 43 2388899887654322 1111111112222 66666666654 245555544
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.28 E-value=1 Score=47.93 Aligned_cols=145 Identities=10% Similarity=0.040 Sum_probs=78.3
Q ss_pred CCEEEEEEccCCCEEEEEe-----------CCC-eEEEEeCccCc-cce--eeeccceecccCCceEEEEEecCCCEEEE
Q 047837 521 AAVTAVKFTCNGRKILSCS-----------ADR-SLVVRDVVETN-SAY--KISRRHQQLASQGTVYDMDIDPTMEVVIT 585 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~-----------~dg-~i~vwd~~~~~-~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 585 (882)
.....|+|.++|+++++-. ..+ .|.+++-..+. ... ++... .......+++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----~l~~p~Gi~~~~~G-lyV- 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----ELSMVTGLAVAVGG-VYV- 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----CCCCccceeEecCC-EEE-
Confidence 3456788888888777643 122 56666543221 111 11111 11356789999988 444
Q ss_pred EeCCCcEEEEEccCC-----ce--E-EEEEecc--CCCCcEEEEECCCCCEEEEEeCC-------------------CcE
Q 047837 586 VGQDKKINSFSIAAG-----KL--I-RSFKQAK--DFGDPMKVTVDPSGSYLVCSYSN-------------------KSI 636 (882)
Q Consensus 586 ~~~d~~v~iwd~~~~-----~~--~-~~~~~~~--~~~~v~~~~~spdg~~l~~~~~d-------------------g~i 636 (882)
+......++.|.... +. + ..+.... +...+..++|.|||.+.++-+.. |.|
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 444433334354311 11 1 1122110 23457789999999877654421 446
Q ss_pred EEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEe
Q 047837 637 CLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 637 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
.-+|..+++....-.++ .....++|+++|+++++-.
T Consensus 167 ~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 66666555433222332 3456899999998877644
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.27 E-value=13 Score=43.59 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=94.9
Q ss_pred CCCEEEEEeCCCeEEEEeCccCccceeeecccee-----ccc-CCceEEEEEec--CCCEEEEEeC----------CCcE
Q 047837 531 NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQ-----LAS-QGTVYDMDIDP--TMEVVITVGQ----------DKKI 592 (882)
Q Consensus 531 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~-~~~v~~~~~sp--~~~~l~~~~~----------d~~v 592 (882)
.+.+++.++.|+.+.-.|.++++.+..+...... +.. ...-..+.-.| .+..+++++. +|.|
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 3457888889999999999988877654321110 000 00000111112 1345555542 6889
Q ss_pred EEEEccCCceEEEEEeccC-------C--------CCc-EEEEECCCCCEEEEEe------------------CCCcEEE
Q 047837 593 NSFSIAAGKLIRSFKQAKD-------F--------GDP-MKVTVDPSGSYLVCSY------------------SNKSICL 638 (882)
Q Consensus 593 ~iwd~~~~~~~~~~~~~~~-------~--------~~v-~~~~~spdg~~l~~~~------------------~dg~i~i 638 (882)
+-+|+++|+++-.+..... . ..+ ..++++++..++..+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999999999988752100 0 011 2355666555544322 1346777
Q ss_pred EEccCCeEEEEEcc-CC--------CCeEEEEECC-CCC---EEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 639 YDFISGEMVAKAMG-HG--------EVITGVTFLP-DCK---HIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 639 wd~~~~~~~~~~~~-h~--------~~v~~l~~s~-d~~---~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
.|.+||+..-.++. |. ....-+.+.. +|+ .++.++.+|.+.+.|-++++.+...
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 88889988766654 21 1111122322 663 7888999999999999988766543
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.27 E-value=4.2 Score=43.34 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee--eEEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcce----
Q 047837 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF--ISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAM---- 119 (882)
Q Consensus 47 I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~--~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~---- 119 (882)
...+..++||++++++..+. .++-|| .|+. ...-......++.+.|.+||..++++. |.+ +|....|+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~--~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGN--FYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCcc--EEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccc
Confidence 34467789999999986432 233344 3332 111122355689999999999998888 554 44545554
Q ss_pred -eeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEE
Q 047837 120 -LVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWT 157 (882)
Q Consensus 120 -~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd 157 (882)
....+........+..+.|.+++..++++..|.+....
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~ 354 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST 354 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC
Confidence 22333322122458999999999988888878665543
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.21 E-value=1.5 Score=48.94 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=75.8
Q ss_pred CCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 047837 521 AAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDID--PTMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~v~iwd~~ 598 (882)
..++-+.-|.-++.-++-+....+.|||.+.+..... ......+.|.++.|. |+++.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-----~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-----ESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-----eeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 3444555555455444545556799999986552222 222445789999885 588899988999999988532
Q ss_pred ---------CCceEEEEEeccCC-CCcEEEEECCCCCEEEEEeCCCcEEEEEc
Q 047837 599 ---------AGKLIRSFKQAKDF-GDPMKVTVDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 599 ---------~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~dg~i~iwd~ 641 (882)
+...++.+....+. .+|.+..|-++|.+++.+ .+.+.|+|-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22355555444444 689999999999777665 357888874
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=94.17 E-value=2.2 Score=44.62 Aligned_cols=147 Identities=16% Similarity=0.070 Sum_probs=85.3
Q ss_pred CccccCCCCCeEEEeeceEEEE-EECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVV-YDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~v-wd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
.+.+.|++. .+++...+.+.. +| ..++.-..+... ....+.++++.++++++++|. .|.+++=....|+.-..
T Consensus 177 ~i~~~~~g~-~v~~g~~G~i~~s~~-~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg~---~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 177 NLRRSPDGK-YVAVSSRGNFYSTWE-PGQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLAR---GGQIRFNDPDDLESWSK 250 (334)
T ss_pred EEEECCCCe-EEEEeCCceEEEEcC-CCCCeEEEeeCC-CcccceeeeEcCCCCEEEEec---CCEEEEccCCCCCcccc
Confidence 345566643 444444444332 22 222222222222 226899999999999988874 34454323445543332
Q ss_pred eec----cccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecC-CcccceeEEEEccCCCEEEEECCCcEEEEE
Q 047837 84 LKG----HLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKAN-SSCSAITSACFSSDAKFIVTAGKKHLKFWT 157 (882)
Q Consensus 84 l~~----h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~-~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd 157 (882)
... -...+..++|.++++.++++. |.+. .....|+.-...... .-......+.|..+++.++++..|.|-.|+
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 221 124578899999998888777 6554 444545443333221 111468889998888888888888887665
Q ss_pred c
Q 047837 158 I 158 (882)
Q Consensus 158 ~ 158 (882)
-
T Consensus 330 ~ 330 (334)
T PRK13684 330 G 330 (334)
T ss_pred C
Confidence 3
No 418
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.08 E-value=8.8 Score=40.13 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCcEEEEEcCCCceeE--EE-eecCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 047837 488 SHYFLASGGRDRTIHLYDVKRNFDLI--ES-IDDHSAAVTAVKFTCNGRKILSCSADRSLV 545 (882)
Q Consensus 488 ~~~~l~~g~~dg~v~iwd~~~~~~~~--~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 545 (882)
.+.+++..-..+.|....+....... .. +......+..+++.|||.++++...+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 34567666667788888876542322 22 233445899999999999998888888764
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.07 E-value=0.5 Score=50.04 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccc-eeEEEECCC-----------------CCEEEEE
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYG-VECIAFSPD-----------------GEHLVTV 106 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~-V~~lafspd-----------------g~~Las~ 106 (882)
..+.+++.+|++++.|+. |.-|.|.++|+.++..++..+|-.+. +.-+....+ ..+|+.-
T Consensus 308 R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 679999999999999987 55789999999999999988875432 221111111 2245544
Q ss_pred c---CEEEEEEcCcceeeeeeecCC
Q 047837 107 G---GYIYLWNWRSAMLVMKLKANS 128 (882)
Q Consensus 107 ~---~~i~iWd~~~g~~~~~~~~~~ 128 (882)
. |.|-||++.+|..+..+....
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEeCC
Confidence 4 999999999998888777543
No 420
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.96 E-value=2.7 Score=47.49 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=97.6
Q ss_pred eEEEEEcCC------CcEEEEEcCCC-ceeEEEeecCCCCEEEEEEccCCCEEEEEeCC------CeEEEEeCccCccce
Q 047837 490 YFLASGGRD------RTIHLYDVKRN-FDLIESIDDHSAAVTAVKFTCNGRKILSCSAD------RSLVVRDVVETNSAY 556 (882)
Q Consensus 490 ~~l~~g~~d------g~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~~~~ 556 (882)
.+++.|+.+ ..+..||..++ +.....+.... .-.++++. ++...++|+.| .++..||..... .
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W 361 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--W 361 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--e
Confidence 367777776 46788888876 33333333222 23334443 56778888888 357778876543 2
Q ss_pred eeeccceecccCCceEEEEEecCCCEEEEEeCCC-----cEEEEEccCCceEEEEEeccCCCCcEEE-EECCCCCEEEEE
Q 047837 557 KISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK-----KINSFSIAAGKLIRSFKQAKDFGDPMKV-TVDPSGSYLVCS 630 (882)
Q Consensus 557 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~-~~spdg~~l~~~ 630 (882)
.....-. . .+...-.-.-+|...|+|+.|| ++..||..+.+--..-. ........ ...-+|++.++|
T Consensus 362 ~~~a~M~--~--~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 362 TPVAPMN--T--KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred eccCCcc--C--ccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEECCEEEEEc
Confidence 1111110 0 1111111223678889999887 57888887654322211 11112222 222358888888
Q ss_pred eCCC------cEEEEEccCCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCC
Q 047837 631 YSNK------SICLYDFISGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGDG-----LQRVKEKYG 685 (882)
Q Consensus 631 ~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~dg-----~i~vwd~~~ 685 (882)
+.++ ++..||..+++.... +..-.... .++. -++.+.+.||.|+ +|..||...
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCC
Confidence 7554 577888887654322 21111111 1222 3677788888776 366677654
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.92 E-value=1.5 Score=41.11 Aligned_cols=110 Identities=19% Similarity=0.280 Sum_probs=70.3
Q ss_pred eEEEEEcC-CCCEEEEeecCCCCeEEEEECC--CceeeEEeeccccceeEEEECCCCCEEEEEc-----C---EEEEE-E
Q 047837 47 LCCVAMSR-DGRYVAAGESGPQPAVLVWDCA--NLAFISELKGHLYGVECIAFSPDGEHLVTVG-----G---YIYLW-N 114 (882)
Q Consensus 47 I~~va~sp-dg~~la~g~~~~d~~I~vwd~~--t~~~~~~l~~h~~~V~~lafspdg~~Las~~-----~---~i~iW-d 114 (882)
..+++-++ |--++|++ .+.|.+|++. ..+++.+|.. -+.|..|+++..|+||++.- . .+++| |
T Consensus 20 P~~~c~~g~d~Lfva~~----g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~N 94 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAAS----GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFN 94 (215)
T ss_pred cceeeccCCceEEEEcC----CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEE
Confidence 44445555 43334443 4589999988 4456667764 38899999999999999987 4 66776 4
Q ss_pred cCcc----eeee-eeecCC-------------------cccceeEEEEccCCCEEEEECCCcEEEEEcccC
Q 047837 115 WRSA----MLVM-KLKANS-------------------SCSAITSACFSSDAKFIVTAGKKHLKFWTIGSS 161 (882)
Q Consensus 115 ~~~g----~~~~-~~~~~~-------------------~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~ 161 (882)
|... ..+. ++-+|. -..++.+++-.|-..-|+++.++.+.+|.+...
T Consensus 95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 4322 2221 122210 114677788888555566677788999988643
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.79 E-value=3 Score=46.63 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=73.0
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC--CCCCEEEEEeCCCcEEEEEcc------
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD--PSGSYLVCSYSNKSICLYDFI------ 642 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~l~~~~~dg~i~iwd~~------ 642 (882)
..-+.-+.-++..++-+....+.|||.+.+.+...-.. ...+.|..+.|. |||+.+.+.+-.+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33344444445444444455899999998875544331 456789999884 689888888888888888531
Q ss_pred ---CCeEEEEE--ccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 643 ---SGEMVAKA--MGHG-EVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 643 ---~~~~~~~~--~~h~-~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+..++..+ ..|+ .+|.+..|.+||.+++.+| ..+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11233332 3344 6899999999997666554 578888753
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.60 E-value=13 Score=43.13 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=54.1
Q ss_pred eeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCcccc--chhhhccccccCCCCCCcEEEeecCC
Q 047837 244 KNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVS--TAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 244 ~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
|..+.++|+|.+|+..+..|.+.+.=....-....+ .+....+. +..+.. ..........+..+.|.|.
T Consensus 87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~--------~~g~~~i~Crt~~v~~-~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEF--------EDGKKEINCRTVPVDE-RFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccc--------cCCCcceeEEEEEech-hhccCCCCceEEEEEEcCC
Confidence 478999999999999988765544322110000001 01111111 111111 1112234456778999987
Q ss_pred C----eEEEEeCCceEEEEEccccccccee
Q 047837 322 E----KLVVVYGDHSLYVWDIHDVNEATRC 347 (882)
Q Consensus 322 ~----~ll~~~~d~~i~iwd~~~~~~~~~~ 347 (882)
+ .+++-..|+.+++||+.........
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCCCCCeEE
Confidence 4 5888899999999999765544443
No 424
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.59 E-value=3.1 Score=35.72 Aligned_cols=103 Identities=8% Similarity=0.082 Sum_probs=68.0
Q ss_pred CCCEEEEeecCCCCeEEEEECCCc--------eeeEEeeccccceeEEEECC-----CCCEEEEEc-CEEEEEEcCccee
Q 047837 55 DGRYVAAGESGPQPAVLVWDCANL--------AFISELKGHLYGVECIAFSP-----DGEHLVTVG-GYIYLWNWRSAML 120 (882)
Q Consensus 55 dg~~la~g~~~~d~~I~vwd~~t~--------~~~~~l~~h~~~V~~lafsp-----dg~~Las~~-~~i~iWd~~~g~~ 120 (882)
..--|++++. -++|.|++.... ..+..|. -...|++|+--+ +...|+.|+ ..+..||+....-
T Consensus 9 ~~pcL~~aT~--~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d 85 (136)
T PF14781_consen 9 VHPCLACATT--GGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD 85 (136)
T ss_pred CceeEEEEec--CCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch
Confidence 3335666655 568999987643 2344444 455677775443 466888888 9999999998877
Q ss_pred eeeeecCCcccceeEEEEcc----CCCEEEEECCCcEEEEEcccCcc
Q 047837 121 VMKLKANSSCSAITSACFSS----DAKFIVTAGKKHLKFWTIGSSAT 163 (882)
Q Consensus 121 ~~~~~~~~~~~~v~~l~fs~----d~~~l~~~~~~~i~iwd~~~~~~ 163 (882)
+..-..+ ..|.++.+-. +..+++++|.-.|.-+|.+..+.
T Consensus 86 ~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 86 LFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred hhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 7655554 5677777643 45566666666787777765543
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=93.19 E-value=3.5 Score=45.78 Aligned_cols=170 Identities=8% Similarity=-0.070 Sum_probs=80.0
Q ss_pred EEEEEcCCC-----cEEEEEcCCC-ceeEEEeecCCCCEEEEEEccCCCEEEEEeCC--CeEEEEeCccCccceeeeccc
Q 047837 491 FLASGGRDR-----TIHLYDVKRN-FDLIESIDDHSAAVTAVKFTCNGRKILSCSAD--RSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 491 ~l~~g~~dg-----~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~ 562 (882)
++++|+.++ .+..||..++ +..+..+.........+. -++...+.|+.+ ..+..||..+.. ......-
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~--W~~~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA--WVNMPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe--EEECCCC
Confidence 567776543 4677887764 111222221111122222 367777777754 357778765321 1111110
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCC---cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDK---KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
.. ......+..-+|+..+.|+.++ .+..||..+.+-...-......... .+..-+|++.+.|+ .+.+|
T Consensus 350 ---~~-~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~--~~~~~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 350 ---LK-PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS--CALVFGRRLFLVGR---NAEFY 420 (480)
T ss_pred ---CC-CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc--eEEEECCEEEEECC---ceEEe
Confidence 00 1111122234677777777653 4778888765432211100111111 22233566667763 56789
Q ss_pred EccCCeEEE--EEccCCCCeEEEEECCCCCEEEEEeCC
Q 047837 640 DFISGEMVA--KAMGHGEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 640 d~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~s~~~d 675 (882)
|.++++... .+.........+. -+|+..+.||.+
T Consensus 421 dp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~ 456 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFY 456 (480)
T ss_pred cCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcC
Confidence 988765432 2221112222222 367777777754
No 426
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.16 E-value=11 Score=38.33 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=67.0
Q ss_pred eceEEEEEECCCCceEEEEEecCC----CCCeEEEEEcCCC-----CEEEEeecCCCCeEEEEECCCceeeEEeeccccc
Q 047837 20 AGCVLVVYDVDSSTQSHLMVSHRM----PKPLCCVAMSRDG-----RYVAAGESGPQPAVLVWDCANLAFISELKGHLYG 90 (882)
Q Consensus 20 ~~~~v~vwd~~~~~~~~~l~~h~~----~~~I~~va~spdg-----~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~ 90 (882)
++..|++||+++++.++.+.-... ...+..+++.... .++..... ..+-|.|+|+.+++..+.+..+.
T Consensus 32 ~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~-~~~glIV~dl~~~~s~Rv~~~~~-- 108 (287)
T PF03022_consen 32 CPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS-GGPGLIVYDLATGKSWRVLHNSF-- 108 (287)
T ss_dssp S--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-TTCEEEEEETTTTEEEEEETCGC--
T ss_pred CCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-CcCcEEEEEccCCcEEEEecCCc--
Confidence 345899999999998887654321 2467778887622 35555543 35589999999999877776532
Q ss_pred eeEEEECCCCC-EEEEEcCEEEEEEcCcceeeeeeecCCcccceeEEEEcc---CCCEEEEECCCcEEEEEcccCc
Q 047837 91 VECIAFSPDGE-HLVTVGGYIYLWNWRSAMLVMKLKANSSCSAITSACFSS---DAKFIVTAGKKHLKFWTIGSSA 162 (882)
Q Consensus 91 V~~lafspdg~-~Las~~~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~---d~~~l~~~~~~~i~iwd~~~~~ 162 (882)
.++.. .-...+|...-|. ..+.+++.+| |++.|....-...++|.+.+..
T Consensus 109 ------~~~p~~~~~~i~g~~~~~~----------------dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 109 ------SPDPDAGPFTIGGESFQWP----------------DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp ------TTS-SSEEEEETTEEEEET----------------TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred ------ceeccccceeccCceEecC----------------CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence 23321 1111122221111 3377777766 7777776654445566665443
No 427
>PRK10115 protease 2; Provisional
Probab=92.99 E-value=22 Score=41.41 Aligned_cols=106 Identities=8% Similarity=-0.068 Sum_probs=68.4
Q ss_pred CccccCCCCCeEEEeece------EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC----CCeEEEEE
Q 047837 5 HNIKKPDSSSKCAYVAGC------VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP----QPAVLVWD 74 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~------~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~----d~~I~vwd 74 (882)
...++||+. .++|..+. .|.+.|+.++..+....... . ..++|++|++.|+...... ...|+.++
T Consensus 131 ~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 131 GMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 456789977 77777642 79999999886432221121 1 4599999998777765422 24799999
Q ss_pred CCCc--eeeEEeecccccee-EEEECCCCCEEEEEc-----CEEEEEEc
Q 047837 75 CANL--AFISELKGHLYGVE-CIAFSPDGEHLVTVG-----GYIYLWNW 115 (882)
Q Consensus 75 ~~t~--~~~~~l~~h~~~V~-~lafspdg~~Las~~-----~~i~iWd~ 115 (882)
+.++ +-...+.+...... .+..+.|+++++... +.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 9988 33334443333333 444566899876544 67888885
No 428
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.96 E-value=3.3 Score=43.41 Aligned_cols=129 Identities=14% Similarity=0.060 Sum_probs=65.5
Q ss_pred eceEEEEEECCCCceEEEEEecCCCCCeEEEEEc--CCCCEEEEeecCCCCeEEEEEC-CCce----eeEEeecc-----
Q 047837 20 AGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMS--RDGRYVAAGESGPQPAVLVWDC-ANLA----FISELKGH----- 87 (882)
Q Consensus 20 ~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~s--pdg~~la~g~~~~d~~I~vwd~-~t~~----~~~~l~~h----- 87 (882)
.|+.+.+||+.+++.++.+.--....-..-|.|. |+..+=.+|.. -..+|..|-- +.++ .+..+..-
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 4679999999999999887543211235566665 44555444433 2334555443 3442 12222211
Q ss_pred ------------ccceeEEEECCCCCEEEEEc---CEEEEEEcCcc---eeeeeeecCC--------------cccceeE
Q 047837 88 ------------LYGVECIAFSPDGEHLVTVG---GYIYLWNWRSA---MLVMKLKANS--------------SCSAITS 135 (882)
Q Consensus 88 ------------~~~V~~lafspdg~~Las~~---~~i~iWd~~~g---~~~~~~~~~~--------------~~~~v~~ 135 (882)
..-|+.|.+|-|.++|.... |.|+.||+.+- +++.++.... -.+...-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 23479999999999999888 99999999864 4444433221 1133467
Q ss_pred EEEccCCCEEEEEC
Q 047837 136 ACFSSDAKFIVTAG 149 (882)
Q Consensus 136 l~fs~d~~~l~~~~ 149 (882)
+..|-||+.|....
T Consensus 379 vqlS~DGkRlYvTn 392 (461)
T PF05694_consen 379 VQLSLDGKRLYVTN 392 (461)
T ss_dssp EEE-TTSSEEEEE-
T ss_pred EEEccCCeEEEEEe
Confidence 88889999887764
No 429
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.92 E-value=5.9 Score=42.23 Aligned_cols=128 Identities=16% Similarity=0.250 Sum_probs=66.9
Q ss_pred cEEEEEcCCC---ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc----cceeeecccee--cccCCc
Q 047837 500 TIHLYDVKRN---FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN----SAYKISRRHQQ--LASQGT 570 (882)
Q Consensus 500 ~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~--~~~~~~ 570 (882)
.|.+++-..+ ......+.........+++.+++ .++ +......++.|..... ....+...... ..+...
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~ 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc
Confidence 5666654321 11223343334456889999888 444 4444433344554221 11112111111 012345
Q ss_pred eEEEEEecCCCEEEEEeCC-------------------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEe
Q 047837 571 VYDMDIDPTMEVVITVGQD-------------------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY 631 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d-------------------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 631 (882)
...++|.|||.+.++.+.. +.|.-+|...++. ..+. ........++|+|+|+++++-.
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a--~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVA--HGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEe--cCcCCCccceECCCCCEEEEcc
Confidence 7789999999876654421 3455555554432 3332 2234567899999999887654
Q ss_pred C
Q 047837 632 S 632 (882)
Q Consensus 632 ~ 632 (882)
.
T Consensus 203 ~ 203 (367)
T TIGR02604 203 D 203 (367)
T ss_pred C
Confidence 3
No 430
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=6.8 Score=36.38 Aligned_cols=172 Identities=14% Similarity=0.092 Sum_probs=95.1
Q ss_pred EEEEEcC--CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEE-EEEeCCCeEEEEeCccCccceeeeccceeccc
Q 047837 491 FLASGGR--DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKI-LSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 491 ~l~~g~~--dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
++.+.+. ...|++||+.++......-.. ...+..=-...-|.++ +..-.+|....+|.++-+..-+..-.
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~------ 130 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE------ 130 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC------
Confidence 5555543 346999999877333222111 1111111111112232 33445788888888765544333211
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcE---EEEECCCCCEEEEEeCCCcEEEEEccCC
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPM---KVTVDPSGSYLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~---~~~~spdg~~l~~~~~dg~i~iwd~~~~ 644 (882)
+.-. ....|++-|+.+....++++-|.++.....++.......+|. .+.|- ||...|-.-.+..|..-|.++|
T Consensus 131 -GeGW--gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 131 -GEGW--GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred -Ccce--eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2223 334466667776666788888887766555554333333333 33332 5766666656667777788888
Q ss_pred eEEEEEc------------cCCCCeEEEEECCCCCEEEEEe
Q 047837 645 EMVAKAM------------GHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 645 ~~~~~~~------------~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
+.+..+. .|....+.+++.|++..+...+
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 8776542 2445677899999885444444
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=6.6 Score=36.44 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=36.0
Q ss_pred CCCEEEEEc----CEEEEEEcCcceeeeeeecCCccccee--EEEEccCCCEEEEECCCcEEEEEcccCc
Q 047837 99 DGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAIT--SACFSSDAKFIVTAGKKHLKFWTIGSSA 162 (882)
Q Consensus 99 dg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~--~l~fs~d~~~l~~~~~~~i~iwd~~~~~ 162 (882)
||.++.+.+ ..|++||+.+|+.+...+... ..+. .+.-..|.-+..+--++....+|.++-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhh
Confidence 567888877 789999999999887766442 1221 1111223233444444555556655433
No 432
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.33 E-value=2.7 Score=41.00 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=81.8
Q ss_pred EEEEEcCCCceeEEEee-cCCCCEEEEEEccCCCEEEEEeC-C--CeEEEEeCccCccceeeeccceecccCCceEEEEE
Q 047837 501 IHLYDVKRNFDLIESID-DHSAAVTAVKFTCNGRKILSCSA-D--RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDI 576 (882)
Q Consensus 501 v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 576 (882)
-.+||+.++.- +.+. .......+=.+-+||++|.+|+. + ..+++++................+.....-.....
T Consensus 48 s~~yD~~tn~~--rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTF--RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcE--EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 34677776521 1221 12222333456789999998875 2 34777776531111111111111223334456667
Q ss_pred ecCCCEEEEEeCCC-cEEEEEccC-CceEEEE--Ee----ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047837 577 DPTMEVVITVGQDK-KINSFSIAA-GKLIRSF--KQ----AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVA 648 (882)
Q Consensus 577 sp~~~~l~~~~~d~-~v~iwd~~~-~~~~~~~--~~----~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~ 648 (882)
-|||+.|+.|+.+. +..+|.-.. ......+ .. .....---.+...|||++++.+..+ -.|||..+.+.++
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 78999999998775 456666432 1111111 10 0111222356778999999988765 4678998888777
Q ss_pred EEccC
Q 047837 649 KAMGH 653 (882)
Q Consensus 649 ~~~~h 653 (882)
.+..-
T Consensus 204 ~lP~l 208 (243)
T PF07250_consen 204 TLPDL 208 (243)
T ss_pred eCCCC
Confidence 76543
No 433
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.32 E-value=16 Score=38.11 Aligned_cols=107 Identities=9% Similarity=0.128 Sum_probs=67.6
Q ss_pred CEEEEEEccCCCEEEEEeCC------CeEEEEeCccCccceeee--ccc-------eecccCCceEEEEEecCCCEEEEE
Q 047837 522 AVTAVKFTCNGRKILSCSAD------RSLVVRDVVETNSAYKIS--RRH-------QQLASQGTVYDMDIDPTMEVVITV 586 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~--~~~-------~~~~~~~~v~~~~~sp~~~~l~~~ 586 (882)
..-+|++.++|.++++.-.+ ..|..++.. +.....+. ... .....+....+++++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34578887788888887777 788888876 44333331 111 223455678999999999976665
Q ss_pred eC-----CC--c-------EEE--EEccC-CceEEEEEe--cc-----CCCCcEEEEECCCCCEEEE
Q 047837 587 GQ-----DK--K-------INS--FSIAA-GKLIRSFKQ--AK-----DFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 587 ~~-----d~--~-------v~i--wd~~~-~~~~~~~~~--~~-----~~~~v~~~~~spdg~~l~~ 629 (882)
.+ |+ . +++ ||..+ ++....+.. .. ....++.+.+-+++++|+.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 43 22 1 444 45444 333333321 11 4578999999999998875
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.24 E-value=4.5 Score=45.74 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=75.0
Q ss_pred ceEEEEEec--CCCEEEEEeCCCcEEEEEccC-------C----c---------eEEEEEeccCCCCcEEEEEC--CCCC
Q 047837 570 TVYDMDIDP--TMEVVITVGQDKKINSFSIAA-------G----K---------LIRSFKQAKDFGDPMKVTVD--PSGS 625 (882)
Q Consensus 570 ~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~-------~----~---------~~~~~~~~~~~~~v~~~~~s--pdg~ 625 (882)
.|+.+.... +.+.|+.+..||.|.+|.+++ . + +...+ .-...++.++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~---~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL---RVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe---ecCCceeEEEEEecCcce
Confidence 455554443 446889999999999997632 1 0 11111 234578899998 7888
Q ss_pred EEEEEeCCCcEEEEEccCC--eEEEE-EccCCCCeEEEEECCCC---C---EEEEEeCCCeEEEEeC
Q 047837 626 YLVCSYSNKSICLYDFISG--EMVAK-AMGHGEVITGVTFLPDC---K---HIVSVGGDGLQRVKEK 683 (882)
Q Consensus 626 ~l~~~~~dg~i~iwd~~~~--~~~~~-~~~h~~~v~~l~~s~d~---~---~l~s~~~dg~i~vwd~ 683 (882)
+||+++....|.||-.... +.... -..|...|-+|+|-++. . +|+.++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999988888888766542 11111 11256688999997643 2 7888999999999888
No 435
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.03 E-value=13 Score=36.30 Aligned_cols=188 Identities=13% Similarity=0.053 Sum_probs=112.2
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
.-+++...+.|--.|..++ +....-.+....-..|..-|||...++-+.. -|.-.|-++.+...-... .......
T Consensus 75 VWft~qg~gaiGhLdP~tG-ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp---~~~a~~n 149 (353)
T COG4257 75 VWFTAQGTGAIGHLDPATG-EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP---LEHADAN 149 (353)
T ss_pred eEEecCccccceecCCCCC-ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc---cccCCCc
Confidence 5566666666767777776 3333333444556678888998887766554 344455543332211111 1112356
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE--EE
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM--VA 648 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~--~~ 648 (882)
.....|.+.|.+.+++... .---.|.. ...+..+. .......+.|+..|||...++.-.+..|-.-|..++.. +-
T Consensus 150 let~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfp-aPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p 226 (353)
T COG4257 150 LETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFP-APQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVP 226 (353)
T ss_pred ccceeeCCCccEEEeeccc-cceecCcc-cCceeeec-cCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceec
Confidence 7788999999998887532 11111111 11223332 12445678899999999998887888888888877622 21
Q ss_pred EEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 649 KAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 649 ~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
.-......-+.+--+|.|+.-+|....+.+..+|....
T Consensus 227 ~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 227 QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred CCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 12221233455556778888888777788888887543
No 436
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.92 E-value=20 Score=38.37 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce------------
Q 047837 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY------------ 556 (882)
Q Consensus 489 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~------------ 556 (882)
..++.+-+.||.+.+|+-+.- ...+.+.. ---...+.|.+.-..+++++.+..+..|....-....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 358999999999999996642 22333332 2333457888888899999999899998764211000
Q ss_pred ----eeeccceecccCCceEEEEEec---CCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEE-E------CC
Q 047837 557 ----KISRRHQQLASQGTVYDMDIDP---TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVT-V------DP 622 (882)
Q Consensus 557 ----~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~------sp 622 (882)
+.........-...+.++..-. ....+++-+ ...+.+.+. +|......+ ......+++ | .+
T Consensus 223 ~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~kr---Ld~~p~~~~~Y~~~~~~~~ 297 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKR---LDYNPSCFCPYRVPWYNEP 297 (418)
T ss_pred ccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEe---cCCceeeEEEEEeecccCC
Confidence 0000001111122333333322 222333322 345555554 354443333 222233322 2 12
Q ss_pred CC-CEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEE---ECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 623 SG-SYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVT---FLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 623 dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~---~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
+. ..+++++.++++.||.-. +++-..+....+| ++. |..-...|++-+.+|.+.+-=+.+
T Consensus 298 ~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 298 STRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 21 247888899999999743 3333322222333 333 333345888899999998876654
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.66 E-value=1.3 Score=42.76 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=50.7
Q ss_pred EcCCCCEEEEeecCCCCeEEEEECCCceeeEEe-------e-------ccccceeEEEECCCCCEEEEEc-CEEEEEEcC
Q 047837 52 MSRDGRYVAAGESGPQPAVLVWDCANLAFISEL-------K-------GHLYGVECIAFSPDGEHLVTVG-GYIYLWNWR 116 (882)
Q Consensus 52 ~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l-------~-------~h~~~V~~lafspdg~~Las~~-~~i~iWd~~ 116 (882)
+..++.+|.+.+. +|.+++||+.+++.+..- . .....|..+.++.+|.-|++.+ |..+.||..
T Consensus 18 l~~~~~~Ll~iT~--~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITS--SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeC--CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4456778888765 889999999998875432 2 2456788899999999888888 888888865
Q ss_pred ccee
Q 047837 117 SAML 120 (882)
Q Consensus 117 ~g~~ 120 (882)
-+.-
T Consensus 96 L~~W 99 (219)
T PF07569_consen 96 LGCW 99 (219)
T ss_pred ccee
Confidence 4443
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.59 E-value=4 Score=46.20 Aligned_cols=119 Identities=9% Similarity=0.131 Sum_probs=75.4
Q ss_pred EEEEEEcc--CCCEEEEEeCCCeEEEEeCccCcc--------cee-----eeccceecccCCceEEEEEe--cCCCEEEE
Q 047837 523 VTAVKFTC--NGRKILSCSADRSLVVRDVVETNS--------AYK-----ISRRHQQLASQGTVYDMDID--PTMEVVIT 585 (882)
Q Consensus 523 v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~--------~~~-----~~~~~~~~~~~~~v~~~~~s--p~~~~l~~ 585 (882)
|+.|.... +...|+.+..||.|.+|.+++--. ... .....-.......+++++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 55554443 456888999999999997642100 000 00011112233578899998 77888898
Q ss_pred EeCCCcEEEEEccCCc-eEEEEEeccCCCCcEEEEECCCC-----C-EEEEEeCCCcEEEEEc
Q 047837 586 VGQDKKINSFSIAAGK-LIRSFKQAKDFGDPMKVTVDPSG-----S-YLVCSYSNKSICLYDF 641 (882)
Q Consensus 586 ~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~spdg-----~-~l~~~~~dg~i~iwd~ 641 (882)
++....|.||-..... .......+.+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888887655421 11111112466788899997643 2 7888999999999888
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.38 E-value=13 Score=41.67 Aligned_cols=91 Identities=11% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeec--CCcccceeEEEEccCCC
Q 047837 67 QPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKA--NSSCSAITSACFSSDAK 143 (882)
Q Consensus 67 d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~--~~~~~~v~~l~fs~d~~ 143 (882)
-..|+|++. +|+++.++.-....+..+.|+.+..+|+..- |++.|+++.... +..... ......|..+.|..+|-
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce
Confidence 446899987 6777766554444889999999888887776 999999975433 322111 11114566666666665
Q ss_pred EEEEECCCcEEEEEcc
Q 047837 144 FIVTAGKKHLKFWTIG 159 (882)
Q Consensus 144 ~l~~~~~~~i~iwd~~ 159 (882)
.+.+.++..+.+-+..
T Consensus 141 avlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVE 156 (829)
T ss_pred EEEecCCcEEEEcCCC
Confidence 5555554445444443
No 440
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=3.3 Score=48.19 Aligned_cols=147 Identities=12% Similarity=0.018 Sum_probs=92.0
Q ss_pred ceEEEEEecCCCEEEEE--eCCCcEEEEEccCCceEE-----EEEe----ccCCCCcEEEEECCCCC-EEEEEeCCCcEE
Q 047837 570 TVYDMDIDPTMEVVITV--GQDKKINSFSIAAGKLIR-----SFKQ----AKDFGDPMKVTVDPSGS-YLVCSYSNKSIC 637 (882)
Q Consensus 570 ~v~~~~~sp~~~~l~~~--~~d~~v~iwd~~~~~~~~-----~~~~----~~~~~~v~~~~~spdg~-~l~~~~~dg~i~ 637 (882)
.+..+...+|+...++. +.+-.|..||+++-..-. -+.. .....-..++.|.|.-. ..|+...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56677777887654443 344478999987543221 1110 01223455778888543 345666789999
Q ss_pred EEEccCCeE-EEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcc----cCCCCCcccEEEecCCCeEEE
Q 047837 638 LYDFISGEM-VAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRN----FAQPAALSPIIFCEEEDQKCR 712 (882)
Q Consensus 638 iwd~~~~~~-~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~ 712 (882)
+..+..... +..+. ....+++++|+|.|+.|+.|-..|++.-|.......... ....+-+..+++-...++++.
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 887754322 22322 556789999999999999999999999998765422211 122445566777777777666
Q ss_pred ecccc
Q 047837 713 MDSVN 717 (882)
Q Consensus 713 ~~~~~ 717 (882)
.....
T Consensus 261 y~n~t 265 (1405)
T KOG3630|consen 261 YGNVT 265 (1405)
T ss_pred ecccc
Confidence 65443
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.17 E-value=1.2 Score=29.40 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=24.5
Q ss_pred cceeEEEECCC-C--CEEEEEc--CEEEEEEcCcc
Q 047837 89 YGVECIAFSPD-G--EHLVTVG--GYIYLWNWRSA 118 (882)
Q Consensus 89 ~~V~~lafspd-g--~~Las~~--~~i~iWd~~~g 118 (882)
+.|.++.|||+ + ++|+.+. +.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 5888877 99999999853
No 442
>PRK13684 Ycf48-like protein; Provisional
Probab=90.15 E-value=27 Score=36.62 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=19.3
Q ss_pred cceeEEEEccCCCEEEEECCCcEE
Q 047837 131 SAITSACFSSDAKFIVTAGKKHLK 154 (882)
Q Consensus 131 ~~v~~l~fs~d~~~l~~~~~~~i~ 154 (882)
..+..+.+.+++.+++++..|.+.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~ 196 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFY 196 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEE
Confidence 678999999999888887777543
No 443
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.00 E-value=1.5 Score=28.98 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCC---CEEEEeecCCCCeEEEEECCC
Q 047837 45 KPLCCVAMSRDG---RYVAAGESGPQPAVLVWDCAN 77 (882)
Q Consensus 45 ~~I~~va~spdg---~~la~g~~~~d~~I~vwd~~t 77 (882)
+.|.++.|||+. .+||.++. .+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~--~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEH--QGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEcc--CCeEEEEEccc
Confidence 468999999854 59999854 88999999984
No 444
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.74 E-value=25 Score=35.76 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=84.8
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCC-----CEEEEE-eCCCcEEEEEccCCceEEEEEecc------
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-----EVVITV-GQDKKINSFSIAAGKLIRSFKQAK------ 610 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~------ 610 (882)
.|.+||+.+.+...+................+.+.... .++..+ ...+-|.++|+.+++.-+.+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 57788888877665555444444445678888887732 233333 334589999999988766553111
Q ss_pred -----------CCCCcEEEEECC---CCCEEEEEeCCCcEEEEEccCC--------------eEEEEEccCCCCeEEEEE
Q 047837 611 -----------DFGDPMKVTVDP---SGSYLVCSYSNKSICLYDFISG--------------EMVAKAMGHGEVITGVTF 662 (882)
Q Consensus 611 -----------~~~~v~~~~~sp---dg~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~l~~ 662 (882)
....+..++.+| +|++|.-..-.+ -++|.+.+. +.+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 112355666655 666666554332 234444321 112222111246678899
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 047837 663 LPDCKHIVSVGGDGLQRVKEKYGILPP 689 (882)
Q Consensus 663 s~d~~~l~s~~~dg~i~vwd~~~~~~~ 689 (882)
+++|.+.++--..+.|..|+..++...
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~ 220 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTP 220 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-G
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCc
Confidence 999999999999999999998875543
No 445
>PHA03098 kelch-like protein; Provisional
Probab=89.58 E-value=19 Score=40.90 Aligned_cols=108 Identities=8% Similarity=0.005 Sum_probs=53.7
Q ss_pred CCCEEEEEeCC------CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC--------cEEEEE
Q 047837 531 NGRKILSCSAD------RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK--------KINSFS 596 (882)
Q Consensus 531 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------~v~iwd 596 (882)
+++..+.|+.+ ..+..||+.+.. ........ . ......+...+++..+.|+.+. .+.+||
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p-~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLP-I---SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCC-c---cccCceEEEECCEEEEECCccCCCCCcccceEEEec
Confidence 66677777632 357888876432 11111100 0 0111122333566667766432 388899
Q ss_pred ccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC-----CcEEEEEccCCeE
Q 047837 597 IAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN-----KSICLYDFISGEM 646 (882)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d-----g~i~iwd~~~~~~ 646 (882)
..+++-...-...........+.+ ++++++.|+.+ +.+.+||..+.+.
T Consensus 463 ~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 463 PVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 887653221110011112222333 67777777654 4688888877653
No 446
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.54 E-value=1.5 Score=29.03 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=29.4
Q ss_pred CCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEE
Q 047837 98 PDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACF 138 (882)
Q Consensus 98 pdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~f 138 (882)
||+++|.++. ++|.++|..+++.+.++... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg---~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG---GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC---CCCceEEe
Confidence 6788887766 99999999999999888875 34445554
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=89.44 E-value=11 Score=41.88 Aligned_cols=131 Identities=10% Similarity=0.038 Sum_probs=64.0
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee--EEeeccccceeEEEECCCC
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI--SELKGHLYGVECIAFSPDG 100 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~--~~l~~h~~~V~~lafspdg 100 (882)
.+..||+.+++....-.-.. ......+..-+|++.++|+.+....+..||..+++-. ..+....... .+..-+|
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~--~~~~~~g 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP--AVASINN 363 (480)
T ss_pred eEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc--EEEEECC
Confidence 57789998876544321111 1111222235778878885433356889998765432 2232111111 1222367
Q ss_pred CEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccC
Q 047837 101 EHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSS 161 (882)
Q Consensus 101 ~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~ 161 (882)
+..+.|| ..+..||..+.+-...-.... ..-...+..-++++.+.|| .+.+||..++
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~--~r~~~~~~~~~~~IYv~GG--~~e~ydp~~~ 425 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY--PHYKSCALVFGRRLFLVGR--NAEFYCESSN 425 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC--ccccceEEEECCEEEEECC--ceEEecCCCC
Confidence 7767776 357788877665433211111 1111112233455555553 4556666443
No 448
>PRK10115 protease 2; Provisional
Probab=89.42 E-value=49 Score=38.65 Aligned_cols=173 Identities=8% Similarity=0.070 Sum_probs=85.9
Q ss_pred CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC------CeEEEEeCccCccce-eeeccceecccCCc
Q 047837 498 DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD------RSLVVRDVVETNSAY-KISRRHQQLASQGT 570 (882)
Q Consensus 498 dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~ 570 (882)
...|++.|+.++..+...+.+ .. ..++|++|++.|+....+ ..|+.+++.++.... .+..... ..
T Consensus 152 ~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~-----~~ 223 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKD-----DT 223 (686)
T ss_pred EEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCC-----CC
Confidence 345888888776322222222 11 469999999877765432 357778887663222 2222111 12
Q ss_pred eE-EEEEecCCCEEEEEeC---CCcEEEEEcc--CCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC---CCcEEEEEc
Q 047837 571 VY-DMDIDPTMEVVITVGQ---DKKINSFSIA--AGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS---NKSICLYDF 641 (882)
Q Consensus 571 v~-~~~~sp~~~~l~~~~~---d~~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---dg~i~iwd~ 641 (882)
.. ....+.++++++..+. ++.+.+++.. +++....+. ...+....+. +..+.+++.... ...|...++
T Consensus 224 ~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~ 300 (686)
T PRK10115 224 FYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP--RRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRV 300 (686)
T ss_pred EEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE--CCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecC
Confidence 22 3334448887665543 3578888853 344322232 1222222222 333333333322 223444455
Q ss_pred c-CCeEEEEEccC-C-CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 642 I-SGEMVAKAMGH-G-EVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 642 ~-~~~~~~~~~~h-~-~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
. .++. ..+..+ . ..|..+.+. .+.++++...+|.-+++-+
T Consensus 301 ~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 301 RDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 4 2322 233334 3 367888887 3345556666776555544
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.13 E-value=8.1 Score=40.32 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=79.7
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC---ceeEEEeecCCCCEEEEEEccCCCEEEEEe
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN---FDLIESIDDHSAAVTAVKFTCNGRKILSCS 539 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 539 (882)
..++|.++.|+++.+ .+|+--.+.+|.+++.... .......+..+..|....|+.+ .-+|..+
T Consensus 65 d~G~I~SIkFSlDnk-------------ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-------------ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred CCCceeEEEeccCcc-------------eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe
Confidence 356888999999988 8999999999999998432 1223334444566899999855 6777777
Q ss_pred CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe--CCCcEEEEEccCCc
Q 047837 540 ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGK 601 (882)
Q Consensus 540 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~iwd~~~~~ 601 (882)
..| +.+|.+.......+....+. ..|.-.+|.++-+.++.++ ..+++.=+.++++.
T Consensus 131 ~~G-~e~y~v~pekrslRlVks~~-----~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 131 DQG-IEFYQVLPEKRSLRLVKSHN-----LNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred cCC-eEEEEEchhhhhhhhhhhcc-----cCccEEEEccccceEeeeccccccccccEEEeece
Confidence 666 88887765444444433332 5788888999887655443 34455555555443
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.07 E-value=2.2 Score=28.17 Aligned_cols=41 Identities=22% Similarity=0.061 Sum_probs=29.6
Q ss_pred CCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEE
Q 047837 54 RDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAF 96 (882)
Q Consensus 54 pdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~laf 96 (882)
||+++|.++.. .++.|.++|..+++.+..+.-. ..-..++|
T Consensus 1 pd~~~lyv~~~-~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS-GSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC-CCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 68888888764 3679999999999988887753 22334444
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.99 E-value=7.3 Score=46.52 Aligned_cols=142 Identities=11% Similarity=0.176 Sum_probs=90.5
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEc--------CCCC-EEEEeecCCCCeEEEEECCC----ceee
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMS--------RDGR-YVAAGESGPQPAVLVWDCAN----LAFI 81 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~s--------pdg~-~la~g~~~~d~~I~vwd~~t----~~~~ 81 (882)
++-...++.+.+||.+++.....+.+-. ..|..|.+- |.=+ +|++++ --.|.|+-+.- +..-
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~s--htIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLS--HTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchh--hhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEeccccCccc
Confidence 4666779999999999988878877766 567777643 2223 344443 22466665432 2110
Q ss_pred -----EEeeccccceeEEEECCCCCEEEEEc-CEEEEEEc----Ccc---e-e-------------eee-eecC-Ccccc
Q 047837 82 -----SELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNW----RSA---M-L-------------VMK-LKAN-SSCSA 132 (882)
Q Consensus 82 -----~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~----~~g---~-~-------------~~~-~~~~-~~~~~ 132 (882)
..+.-..-.|.|+....+|+.+.+|- | .||.+ .+| + + +.+ +... .+..+
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ccccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 11222355689999899999999887 7 44543 111 1 0 001 1111 23379
Q ss_pred eeEEEEccCCCEEEEECC-CcEEEEEcccCcc
Q 047837 133 ITSACFSSDAKFIVTAGK-KHLKFWTIGSSAT 163 (882)
Q Consensus 133 v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~ 163 (882)
|..++.......+.+-+. +.|.+|++.....
T Consensus 245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred ceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 999999998888888887 8999999987433
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.70 E-value=0.25 Score=55.22 Aligned_cols=185 Identities=9% Similarity=-0.007 Sum_probs=101.3
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCcc--CccceeeeccceecccCCceEEEE
Q 047837 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVE--TNSAYKISRRHQQLASQGTVYDMD 575 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~ 575 (882)
+-+++-+.......-..+++..+.|-.+.|-. +...+. -.-|.+.|||+.- ++....+.. +........+.-+.
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v-~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEV-TPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEE-eecCcCCCCcceee
Confidence 44666665443211123456667788888843 222222 2336788998863 222111111 11111112333444
Q ss_pred Ee---cCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEE-----------ECCCCCEEEEEeCCCcEEEEEc
Q 047837 576 ID---PTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVT-----------VDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 576 ~s---p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-----------~spdg~~l~~~~~dg~i~iwd~ 641 (882)
|. ++.-++..+..++++++..+.+... ..+. +|...++.++ .||||..+|.++.||.++.|.+
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r--sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR--SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHH--hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44 4566777777888888877654322 2222 3555544433 6999999999999998888776
Q ss_pred c-----CCeEEEEEccCCC-CeEEEEECCCC---------CEEEEEe-CCCeEEEEeCCCCCCC
Q 047837 642 I-----SGEMVAKAMGHGE-VITGVTFLPDC---------KHIVSVG-GDGLQRVKEKYGILPP 689 (882)
Q Consensus 642 ~-----~~~~~~~~~~h~~-~v~~l~~s~d~---------~~l~s~~-~dg~i~vwd~~~~~~~ 689 (882)
. ...+++.++.|.+ +-.|..|...- .++++++ ....+++|...-++++
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4 3355667777773 32232233221 2344444 4557899988776665
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=48 Score=37.51 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceee
Q 047837 520 SAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKI 558 (882)
Q Consensus 520 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 558 (882)
...+..+..||+.++|+-=..+|.|.+-+.+..+.....
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 456788999999999999999999999888755544443
No 454
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.46 E-value=19 Score=38.96 Aligned_cols=115 Identities=9% Similarity=0.043 Sum_probs=61.9
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeecccee-cccCCceEEEEEecCC------CEEEEEe----
Q 047837 519 HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQ-LASQGTVYDMDIDPTM------EVVITVG---- 587 (882)
Q Consensus 519 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~------~~l~~~~---- 587 (882)
.-...+.|+|.|||++|++--..|.|++++................ ....+....|+++|+- .+|....
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3455688999999987776655688999876543221111101000 1124678999999885 2343332
Q ss_pred ------CCCcEEEEEccCC--c---eEEEEEe--ccCCCCcEEEEECCCCCEEEEEeCC
Q 047837 588 ------QDKKINSFSIAAG--K---LIRSFKQ--AKDFGDPMKVTVDPSGSYLVCSYSN 633 (882)
Q Consensus 588 ------~d~~v~iwd~~~~--~---~~~~~~~--~~~~~~v~~~~~spdg~~l~~~~~d 633 (882)
....|.-|.+... . ....+.. ......-..|+|.|||.+.++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444554321 1 1111211 0112234578899999877765544
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.06 E-value=16 Score=31.47 Aligned_cols=120 Identities=8% Similarity=0.067 Sum_probs=68.9
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCcccee-eeccceecccCCceEEEEEec-----CCCEEEEEeCCCcEEEEEccC
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYK-ISRRHQQLASQGTVYDMDIDP-----TMEVVITVGQDKKINSFSIAA 599 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~v~iwd~~~ 599 (882)
-.|......|+.++.-|.|.|++......... .......+.-...|++++-.+ +...|+.| ....+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 34555556788888888899998764322111 111111222334777776554 23455555 456899999987
Q ss_pred CceEEEEEeccCCCCcEEEEEC---C-CCCEEEEEeCCCcEEEEEccCCeEEEEE
Q 047837 600 GKLIRSFKQAKDFGDPMKVTVD---P-SGSYLVCSYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 600 ~~~~~~~~~~~~~~~v~~~~~s---p-dg~~l~~~~~dg~i~iwd~~~~~~~~~~ 650 (882)
...+..-. -...+.++.+- . +..++++| .+..|.-||.+-.+..-+.
T Consensus 83 N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred Cchhhhhh---CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 76554332 33567777663 2 23444444 5677888886655554433
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.02 E-value=1.9 Score=44.62 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=100.0
Q ss_pred eEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceE-EEEEecCCCEEEEEeCCC
Q 047837 512 LIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVY-DMDIDPTMEVVITVGQDK 590 (882)
Q Consensus 512 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~ 590 (882)
.+..+......|..+-..|||+.|..-+. ..+.++++.+.....+.............|+ .+..-..|.-++++..||
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 34445555677888999999999987776 6688888874332221110000000001122 122233456677888888
Q ss_pred cEE-EEEccCCce-----EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECC
Q 047837 591 KIN-SFSIAAGKL-----IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP 664 (882)
Q Consensus 591 ~v~-iwd~~~~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 664 (882)
-|. .||++.+.. ++.++ -...++..+.-..+.+-+++-+.+|++.++.....+.+-.-. --..+.-+++||
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~--l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp 367 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFK--LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSP 367 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccc--cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCc
Confidence 765 456654321 22222 112333333333345567777788888888765544433222 223566789999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 665 DCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 665 d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
.+.+|++-. .|.|+++.+++..+.-
T Consensus 368 ~~~~Ll~e~-~gki~~~~l~Nr~Pei 392 (733)
T COG4590 368 NQAYLLSED-QGKIRLAQLENRNPEI 392 (733)
T ss_pred ccchheeec-CCceEEEEecCCCCCc
Confidence 999998655 4779999988765543
No 457
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.91 E-value=8.1 Score=37.76 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=49.6
Q ss_pred eEEEEECCCceeeEEeec-cccceeEEEECCCCCEEEEEc-----CEEEEEEcCc----ceeeeeeecCCcccceeEEEE
Q 047837 69 AVLVWDCANLAFISELKG-HLYGVECIAFSPDGEHLVTVG-----GYIYLWNWRS----AMLVMKLKANSSCSAITSACF 138 (882)
Q Consensus 69 ~I~vwd~~t~~~~~~l~~-h~~~V~~lafspdg~~Las~~-----~~i~iWd~~~----g~~~~~~~~~~~~~~v~~l~f 138 (882)
.-.+||+.+++.. .+.- ..--..+=+|-+||++|.+|+ ..+++++..+ ......-..-.....--.+.-
T Consensus 47 ~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 3568999987653 3332 222223346778999999998 5688888654 111111000111145556667
Q ss_pred ccCCCEEEEECCC
Q 047837 139 SSDAKFIVTAGKK 151 (882)
Q Consensus 139 s~d~~~l~~~~~~ 151 (882)
.|||+.|+.+|..
T Consensus 126 L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 126 LPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCEEEEeCcC
Confidence 7899999999875
No 458
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.00 E-value=58 Score=36.59 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCCeEEEeeceEEEEEECCCCc--eEEEEEec-CCCCCeEEEEEcCCC-CEEEEeecCCCCeEEEEECCCceeeEEeecc
Q 047837 12 SSSKCAYVAGCVLVVYDVDSST--QSHLMVSH-RMPKPLCCVAMSRDG-RYVAAGESGPQPAVLVWDCANLAFISELKGH 87 (882)
Q Consensus 12 ~~~~~~~~~~~~v~vwd~~~~~--~~~~l~~h-~~~~~I~~va~spdg-~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h 87 (882)
+...++....|.+....+.... ......+. . ...+++++-.+| .+|.+|+..+|+.+.-|.....+.+..+. .
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~--~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N 298 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLC--SIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-N 298 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE----S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcC--ChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-C
Confidence 3334444445555555554322 12222233 3 567788877776 46666666678889999977777777776 4
Q ss_pred ccceeEEEECCC----CC------EEEEE-c----CEEEEEEcCcce---eeeeeecCCcccceeEEEEcc-CCCEEEEE
Q 047837 88 LYGVECIAFSPD----GE------HLVTV-G----GYIYLWNWRSAM---LVMKLKANSSCSAITSACFSS-DAKFIVTA 148 (882)
Q Consensus 88 ~~~V~~lafspd----g~------~Las~-~----~~i~iWd~~~g~---~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~ 148 (882)
-++|..+++-+. .. .|+++ | |.+++..-.-+- .+....... ...++.+.... +..+|+..
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEE
Confidence 567888888531 11 44444 4 788888532111 222222221 23444454433 25566666
Q ss_pred CCCcEEEEEcc
Q 047837 149 GKKHLKFWTIG 159 (882)
Q Consensus 149 ~~~~i~iwd~~ 159 (882)
....-+++.+.
T Consensus 378 ~~~~T~vl~~~ 388 (504)
T PF10433_consen 378 FPNETRVLQIS 388 (504)
T ss_dssp ESSEEEEEEES
T ss_pred cCCceEEEEEe
Confidence 65656666653
No 459
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.94 E-value=55 Score=36.30 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=64.4
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-------------CCcE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-------------DKKI 592 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------d~~v 592 (882)
+...++|.+++... ..+..+|+. ++........... ...=..+...|+|++|+.+.. .-.|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~---~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~I 226 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY---YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVI 226 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE---E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc---cccccccEECCCCCEEEEEeecccccCCCCccEecCEE
Confidence 56677888887655 668888876 3322221111100 011235677888988887772 1236
Q ss_pred EEEEccCCceEEEEEeccC-------------------------CCCcEEEEECC-CCCEEEEEeCCCcEEEEEccCCeE
Q 047837 593 NSFSIAAGKLIRSFKQAKD-------------------------FGDPMKVTVDP-SGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 593 ~iwd~~~~~~~~~~~~~~~-------------------------~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
..+| .+|+.+..+....| --.+.++.+.+ ++.+|+++-.-..|...|.++++.
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 6666 77777766543222 13478899988 666666766666899999889988
Q ss_pred EEEEccCC
Q 047837 647 VAKAMGHG 654 (882)
Q Consensus 647 ~~~~~~h~ 654 (882)
...+-.|.
T Consensus 306 ~Wilg~~~ 313 (477)
T PF05935_consen 306 KWILGPPG 313 (477)
T ss_dssp EEEES-ST
T ss_pred EEEeCCCC
Confidence 87776553
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.91 E-value=13 Score=39.43 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=85.9
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCC--------CEEEEEeCCCeEEEEeCccCccceeeeccc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNG--------RKILSCSADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~--------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
++..|+....++-.|+..+ +.+....-|..- -+.|.|+. ..|+-.+ +..|.-.|.+............
T Consensus 482 i~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred EEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeeh
Confidence 4455666677788888777 777777766654 56677743 2344334 4445555665443222222111
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
. ........+.+- ....++|+++..|.|++||--.-.....+. +-...|..+..+.+|+++++.+.. .+.+-|++
T Consensus 558 d-Y~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 558 D-YKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred h-cccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 1 111112222222 234589999999999999965333323333 556789999999999998877654 67777764
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.17 E-value=3.9 Score=39.55 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=46.3
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceec--------ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL--------ASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 598 (882)
+..++.+|++.+.+|.+++||+.+.+...........+ .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34478899999999999999999765443331111111 2345677788887777666543 4677777765
No 462
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.02 E-value=5.5 Score=31.79 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=36.0
Q ss_pred eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEE
Q 047837 22 CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVW 73 (882)
Q Consensus 22 ~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vw 73 (882)
+.+..||+.+++....+.+- .--+.|++|+|+.+|.+++...-...+.|
T Consensus 37 GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 57999999999887676665 35788999999999999976433333333
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.99 E-value=0.21 Score=51.92 Aligned_cols=134 Identities=15% Similarity=0.215 Sum_probs=89.9
Q ss_pred cccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE-Eee
Q 047837 7 IKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS-ELK 85 (882)
Q Consensus 7 ~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~-~l~ 85 (882)
.+-|.+...++.++...|..||-... . .+.+.. ++.-..+++..+|..+|+... ..+.+++||+.+..... .+.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq-~--~le~n~-tg~aldm~wDkegdvlavlAe-k~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQ-V--ILELNP-TGKALDMAWDKEGDVLAVLAE-KTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcc-e--ecccCC-chhHhhhhhccccchhhhhhh-cCCCeeechhhhhhHHHHhcc
Confidence 44566555666666778888885522 2 222222 256667888888877666542 36789999998654322 122
Q ss_pred c-cccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC
Q 047837 86 G-HLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG 149 (882)
Q Consensus 86 ~-h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~ 149 (882)
+ |.... ++|++-+..++.+. +.+.|++-.+.+.+...-.|. .+++++++.+.+..+....
T Consensus 116 g~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~--RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 116 GTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ--RRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred CcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccc--cceeEEEecccceeeecCc
Confidence 2 44433 88999999999888 999999987776665554454 8999999999876655443
No 464
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.72 E-value=12 Score=40.01 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=53.2
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEE---------ccCCeEEEE--Ec---------cCCCCeEEEEECCCC---CEEE
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYD---------FISGEMVAK--AM---------GHGEVITGVTFLPDC---KHIV 670 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd---------~~~~~~~~~--~~---------~h~~~v~~l~~s~d~---~~l~ 670 (882)
.|..+..++.|..++-.+.+|.+.++= +++|+.... .. ...-.+...+|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467788899999999998998655543 123432211 11 111245678899975 6788
Q ss_pred EEeCCCeEEEEeCCCCCCCc
Q 047837 671 SVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 671 s~~~dg~i~vwd~~~~~~~~ 690 (882)
.-+.|.+||+||+.....+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 88999999999998876653
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.62 E-value=14 Score=37.15 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=64.3
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec---C-CCCeEEEEECCCceeeEEeec-----cccceeE
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES---G-PQPAVLVWDCANLAFISELKG-----HLYGVEC 93 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~---~-~d~~I~vwd~~t~~~~~~l~~-----h~~~V~~ 93 (882)
.|++||..+.+-...-.+ -.+.|+.+.|..+.++++.|.- + ....+..||..+..- ..+.+ -.++|+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred EEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 699999997776655434 3388999999988888888842 2 356789999987754 33333 2377888
Q ss_pred EEECC-CCCEEEEEc------CEEEEEEcCcceeee
Q 047837 94 IAFSP-DGEHLVTVG------GYIYLWNWRSAMLVM 122 (882)
Q Consensus 94 lafsp-dg~~Las~~------~~i~iWd~~~g~~~~ 122 (882)
+.+.. |+..+..++ ..|..||-.+...+.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~ 129 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG 129 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence 88754 444444322 567777655444443
No 466
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.97 E-value=72 Score=35.83 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc--------eee-EEeeccccceeEEEECC
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL--------AFI-SELKGHLYGVECIAFSP 98 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~--------~~~-~~l~~h~~~V~~lafsp 98 (882)
.-..+++.|.|+.+|.+.. .+.+.|+-++.. ..+ ..+ .....|..++|-.
T Consensus 45 ~G~~l~vDP~~R~i~v~a~--e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~ 103 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAY--EGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLH 103 (504)
T ss_dssp T--EEEE-TTSSEEEEEEB--TTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES
T ss_pred CCcEEEECCcCCEEEEEec--CCeEEEEEecccccccccccccccccc-cCCceEEEEEEEe
Confidence 3557999999999999966 778888888760 111 111 1256678888875
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.82 E-value=0.11 Score=53.89 Aligned_cols=143 Identities=11% Similarity=0.123 Sum_probs=97.2
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEE-EEeCCCcEEEEEccCCc
Q 047837 523 VTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVI-TVGQDKKINSFSIAAGK 601 (882)
Q Consensus 523 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~ 601 (882)
.....|-+.+.-++.++.+..+..||-. ++....... .+....++|.-++..++ .+-..+.+.+||+.+..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~-------tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP-------TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC-------chhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3345677777778888888889999865 222222211 24566788888877554 44567899999998643
Q ss_pred eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCC
Q 047837 602 LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg 676 (882)
.. ++.. +....-.-+.|++.+..++.+-..|.+.|++..+.+.+...-.|..+++.+++.+.+. .+.++.|.
T Consensus 109 tq-qLE~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 109 TQ-QLES-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred HH-HHhc-cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 22 2221 2222222378999999999999999999999888776665545999999999998874 44455444
No 468
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.82 E-value=40 Score=35.12 Aligned_cols=66 Identities=8% Similarity=0.045 Sum_probs=34.4
Q ss_pred CCCEEEEEeC-----CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC----cEEEEEccCCc
Q 047837 531 NGRKILSCSA-----DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK----KINSFSIAAGK 601 (882)
Q Consensus 531 ~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~ 601 (882)
+++..+.|+. ...+..||+.+.. ....... ....+....+...++++.+.|+.++ .+..||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~---p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE--WFELPDF---PGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC--eeECCCC---CCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 5666666664 2357778876432 2211110 0001222233344677777777654 35688887654
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.71 E-value=56 Score=34.39 Aligned_cols=190 Identities=19% Similarity=0.291 Sum_probs=108.6
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc----CCCE--EEEEe-CC---CeEEEEeCccCcccee-e
Q 047837 490 YFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC----NGRK--ILSCS-AD---RSLVVRDVVETNSAYK-I 558 (882)
Q Consensus 490 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~--l~s~~-~d---g~i~vwd~~~~~~~~~-~ 558 (882)
.+++....++-+.+||+.. +.+..+. .+.+..+..-. +|+. |+.++ .+ .+|++|.+.......+ +
T Consensus 69 SlIigTdK~~GL~VYdL~G--k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDG--KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp -EEEEEETTTEEEEEETTS---EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ceEEEEeCCCCEEEEcCCC--cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 3777777888899999975 3444443 23444443321 3443 44443 22 4699998874322222 1
Q ss_pred ecc-ceecccCCceEEEEEe--c-CCC-EEEEEeCCCcEEEEEcc---CC----ceEEEEEeccCCCCcEEEEECCCCCE
Q 047837 559 SRR-HQQLASQGTVYDMDID--P-TME-VVITVGQDKKINSFSIA---AG----KLIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 559 ~~~-~~~~~~~~~v~~~~~s--p-~~~-~l~~~~~d~~v~iwd~~---~~----~~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
... +........++.+++- + +|. +++....+|.+.-|.+. .+ +++++|. -...+-.|+......+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDETGR 221 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecccCC
Confidence 111 1111122356777763 3 354 66677788988877764 23 4677776 3458899999998899
Q ss_pred EEEEeCCCcEEEEEccC-----CeEEEEEcc--CCCCeEEEEEC--CCCC-EEEEE-eCCCeEEEEeCCCC
Q 047837 627 LVCSYSNKSICLYDFIS-----GEMVAKAMG--HGEVITGVTFL--PDCK-HIVSV-GGDGLQRVKEKYGI 686 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~-----~~~~~~~~~--h~~~v~~l~~s--~d~~-~l~s~-~~dg~i~vwd~~~~ 686 (882)
|..+-++.-|.-|+.+. ++.+....+ ....|-.|+.- .+++ ||+.. -.+++..||+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988777777752 233433333 44677778763 3443 55444 47889999998764
No 470
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.57 E-value=18 Score=38.44 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=88.7
Q ss_pred ccccCCCCCeEEEeece---EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCE-------EEEeecCCCCeEEEEEC
Q 047837 6 NIKKPDSSSKCAYVAGC---VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRY-------VAAGESGPQPAVLVWDC 75 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~~~---~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~-------la~g~~~~d~~I~vwd~ 75 (882)
+..|..++ .++|..|+ .+.-.|++.|+.+-.-.-|. .| -+.|.|+.++ -.+|-. +..|.-.|.
T Consensus 472 ~mlh~~ds-sli~~dg~~~~kLykmDIErGkvveeW~~~d---dv-vVqy~p~~kf~qmt~eqtlvGlS--~~svFrIDP 544 (776)
T COG5167 472 IMLHDNDS-SLIYLDGGERDKLYKMDIERGKVVEEWDLKD---DV-VVQYNPYFKFQQMTDEQTLVGLS--DYSVFRIDP 544 (776)
T ss_pred ceeecCCc-ceEEecCCCcccceeeecccceeeeEeecCC---cc-eeecCCchhHHhcCccceEEeec--ccceEEecc
Confidence 34444443 46666654 67778888888887776665 23 5677775431 112322 334555554
Q ss_pred C-CceeeEEeeccccceeEEEECC----CCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEE
Q 047837 76 A-NLAFISELKGHLYGVECIAFSP----DGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTA 148 (882)
Q Consensus 76 ~-t~~~~~~l~~h~~~V~~lafsp----dg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 148 (882)
. .|..+.... ....++--.||. ..-|+|.++ |.|++||--.-+....+++-+ ..|..+..+.+|+++++.
T Consensus 545 R~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 545 RARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTANGKHILAT 621 (776)
T ss_pred cccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccc--cceeeeEeecCCcEEEEe
Confidence 3 332222111 222223233333 344888888 999999965444444455544 789999999999999988
Q ss_pred CCCcEEEEEccc
Q 047837 149 GKKHLKFWTIGS 160 (882)
Q Consensus 149 ~~~~i~iwd~~~ 160 (882)
....+.+-|+.-
T Consensus 622 Ck~yllL~d~~i 633 (776)
T COG5167 622 CKNYLLLTDVPI 633 (776)
T ss_pred ecceEEEEeccc
Confidence 888888888753
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.55 E-value=23 Score=37.98 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=19.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 522 AVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
.|..+..++.|..++..+.+|.+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vM 129 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVM 129 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEE
Confidence 4667788899999998888885444
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.48 E-value=20 Score=37.68 Aligned_cols=146 Identities=11% Similarity=0.108 Sum_probs=91.6
Q ss_pred EEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCc
Q 047837 315 ACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGT 394 (882)
Q Consensus 315 ~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~ 394 (882)
.+-|...++.+.+...|.+.=|-+......... +++ ....++|.++.|+ +|.+.||+--.|.+
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----------Sfd-----m~d~G~I~SIkFS-lDnkilAVQR~~~~ 89 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----------SFD-----MDDKGEIKSIKFS-LDNKILAVQRTSKT 89 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----------eee-----ecCCCceeEEEec-cCcceEEEEecCce
Confidence 456666677777777777777766443211111 111 1134577788888 89999999999999
Q ss_pred EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEec
Q 047837 395 IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSL 474 (882)
Q Consensus 395 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~ 474 (882)
|.+.+....+........ .......|....|..
T Consensus 90 v~f~nf~~d~~~l~~~~~-----------------------------------------------ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 90 VDFCNFIPDNSQLEYTQE-----------------------------------------------CKTKNANILGFCWTS 122 (657)
T ss_pred EEEEecCCCchhhHHHHH-----------------------------------------------hccCcceeEEEEEec
Confidence 999988543332221111 112334466667766
Q ss_pred CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEe
Q 047837 475 SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCS 539 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 539 (882)
... +|.-...| +.+|.+......++..+.|...|.-..|.++.+.+..++
T Consensus 123 s~e--------------~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 123 STE--------------IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred Cee--------------EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 643 55444444 778877665566677778888999999999877655443
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.41 E-value=12 Score=44.74 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEE--------EecCCCEEEEEeCCCcEEEEEccCCc--
Q 047837 532 GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMD--------IDPTMEVVITVGQDKKINSFSIAAGK-- 601 (882)
Q Consensus 532 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~~~~~d~~v~iwd~~~~~-- 601 (882)
++..++. |+.+.+|+.+++.......... ..|..+. |-|.=++++....--.|.++-+.-.+
T Consensus 91 ~RaWiTi--Dn~L~lWny~~~~e~~~~d~~s------htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 91 GRAWITI--DNNLFLWNYESDNELAEYDGLS------HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred cceEEEe--CCeEEEEEcCCCCccccccchh------hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence 4444443 6779999999865544433222 1333332 23333444444444555555443211
Q ss_pred -----eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc----CC---e-E----------------EEEEc-
Q 047837 602 -----LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI----SG---E-M----------------VAKAM- 651 (882)
Q Consensus 602 -----~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~----~~---~-~----------------~~~~~- 651 (882)
....+........|+++....+|+.+.+|- || .||.+. .| + + +-.+.
T Consensus 163 ~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 163 GELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred CcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 111222224566788999888999888875 55 455541 11 1 0 11223
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 652 GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 652 ~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.+.++|..+........|.+-+.-|+|++||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4677999999998889999999999999999975
No 474
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.21 E-value=1e+02 Score=36.51 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=51.3
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE----c-----------c----CCCCeEEEEECCCCCEEEEE
Q 047837 612 FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA----M-----------G----HGEVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~----~-----------~----h~~~v~~l~~s~d~~~l~s~ 672 (882)
...|.+++...-+.+++....||+|.++|..+.+.+... . | +-..+..++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 355777877777889999999999999998876554333 1 0 11234458899999999999
Q ss_pred eCCCeEE
Q 047837 673 GGDGLQR 679 (882)
Q Consensus 673 ~~dg~i~ 679 (882)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999866
No 475
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.15 E-value=1.7 Score=49.07 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=81.1
Q ss_pred EEEEEECCC--CceEEEEEecC------CCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEE
Q 047837 23 VLVVYDVDS--STQSHLMVSHR------MPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECI 94 (882)
Q Consensus 23 ~v~vwd~~~--~~~~~~l~~h~------~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~l 94 (882)
.+.|||++- |+..-.+.-|. .+..|...-|-++.-++..+.. +++|++-++.+... ..+++|...++.+
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~--~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK--GGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC--CCceeEeeechHHH-HHHHhcCCCcccH
Confidence 577888753 33222222221 1123444444556777777755 55666544433222 3455687776665
Q ss_pred E-----------ECCCCCEEEEEc--CEEEEEEc-----CcceeeeeeecCCcccceeEEEEccCC---------CEEEE
Q 047837 95 A-----------FSPDGEHLVTVG--GYIYLWNW-----RSAMLVMKLKANSSCSAITSACFSSDA---------KFIVT 147 (882)
Q Consensus 95 a-----------fspdg~~Las~~--~~i~iWd~-----~~g~~~~~~~~~~~~~~v~~l~fs~d~---------~~l~~ 147 (882)
+ .||||+.+|.+. |.++.|.+ ..-+++...+.|.....|..+ |.... .++++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEe
Confidence 4 489999998877 66665554 344566666666533455555 55432 35666
Q ss_pred ECC--CcEEEEEcccCccceecc
Q 047837 148 AGK--KHLKFWTIGSSATARTRL 168 (882)
Q Consensus 148 ~~~--~~i~iwd~~~~~~~~~~~ 168 (882)
+.+ +.+++|.-...++...+.
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~ 332 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL 332 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc
Confidence 666 469999988777743333
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.83 E-value=11 Score=37.85 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=61.7
Q ss_pred eEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--------CEEEEEEcCcceeeeeeecC--CcccceeEEEE
Q 047837 69 AVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--------GYIYLWNWRSAMLVMKLKAN--SSCSAITSACF 138 (882)
Q Consensus 69 ~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--------~~i~iWd~~~g~~~~~~~~~--~~~~~v~~l~f 138 (882)
.|++||..+.+-...-.+-.+.|+.|.|..+.++++.|. ..+..||+.+..-...-... .-.++|..+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 599999988887666666788999999998888888776 46889998877543222211 12378888888
Q ss_pred cc-CCCEEEEECC-----CcEEEEEcc
Q 047837 139 SS-DAKFIVTAGK-----KHLKFWTIG 159 (882)
Q Consensus 139 s~-d~~~l~~~~~-----~~i~iwd~~ 159 (882)
.. |+..+..+|. ..|..||-.
T Consensus 97 ~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 97 ISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred eccCCceEEEeceecCCCceEEEEcCC
Confidence 54 4444443332 347777643
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.34 E-value=38 Score=36.79 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=61.3
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEccCCce--EEEEE---eccCCCCcEEEEECCCC------CEEEEEe------
Q 047837 569 GTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL--IRSFK---QAKDFGDPMKVTVDPSG------SYLVCSY------ 631 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~spdg------~~l~~~~------ 631 (882)
...+.|+|.|||++|++--..|.|++++..++.. +..+. .....+....|+++|+- ++|....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 3677899999998777654469999998665432 21111 01135778999999884 2343332
Q ss_pred ----CCCcEEEEEccCC-------eEE-EEEc---cCCCCeEEEEECCCCCEEEEEeCC
Q 047837 632 ----SNKSICLYDFISG-------EMV-AKAM---GHGEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 632 ----~dg~i~iwd~~~~-------~~~-~~~~---~h~~~v~~l~~s~d~~~l~s~~~d 675 (882)
....|.-|.+... +.+ ..+. .|. -..|+|.|||++.++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 1223444544321 112 1121 133 3467899999877766644
No 478
>PRK13615 lipoprotein LpqB; Provisional
Probab=82.26 E-value=89 Score=35.11 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=91.5
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC-Cce
Q 047837 524 TAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA-GKL 602 (882)
Q Consensus 524 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~ 602 (882)
.+++.++++..++....++.+.++.... ....+... ..++.-.|.+++ .+-+.-.+...++..... |..
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~--~~~~~~~~-------~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~ 406 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDR--DAVLLDTR-------PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG 406 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCC--cceeeccC-------CccccCcCcCCC-CEEEEeCCCceEEEEecCCCce
Confidence 7889999999999888888788776551 11111111 246667777777 444443333345444332 443
Q ss_pred EEEEEec-cCCCCcEEEEECCCCCEEEEEeC---CCcEEEEEcc--CC--eEE----EEEccCCCCeEEEEECCCCCEEE
Q 047837 603 IRSFKQA-KDFGDPMKVTVDPSGSYLVCSYS---NKSICLYDFI--SG--EMV----AKAMGHGEVITGVTFLPDCKHIV 670 (882)
Q Consensus 603 ~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~---dg~i~iwd~~--~~--~~~----~~~~~h~~~v~~l~~s~d~~~l~ 670 (882)
.. .... .....|+.+..|+||-.+|.-.. .++|+|--+. .+ ..+ ..+..-...+.++.|..++.+.+
T Consensus 407 ~~-v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laV 485 (557)
T PRK13615 407 HP-VAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVAT 485 (557)
T ss_pred EE-eeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEE
Confidence 22 2211 23357999999999988776432 3456653332 23 123 12222234889999999998766
Q ss_pred EE---eCCCeEEEEeCCCCCCC
Q 047837 671 SV---GGDGLQRVKEKYGILPP 689 (882)
Q Consensus 671 s~---~~dg~i~vwd~~~~~~~ 689 (882)
.+ +.+..+++-.+.++...
T Consensus 486 l~~~~~~~~~v~~v~v~g~~~~ 507 (557)
T PRK13615 486 LTLAPDGERQVELHQVGGPSKD 507 (557)
T ss_pred EeccCCCCceEEEEECCCcccc
Confidence 55 23456778877755433
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.79 E-value=1.2e+02 Score=36.07 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=78.0
Q ss_pred CCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCc----cceeeeccce-ec----ccCCceEEEEEecCCCEEEEEeCCC
Q 047837 521 AAVTAVKFTC-NGRKILSCSADRSLVVRDVVETN----SAYKISRRHQ-QL----ASQGTVYDMDIDPTMEVVITVGQDK 590 (882)
Q Consensus 521 ~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~l~~~~~d~ 590 (882)
.+..+++|+| +.+.||+....|...||++.... .......... .+ .....-..+.|.++...|++++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 4677899999 66799999999999999992111 1111111110 00 11134457889888888887654 6
Q ss_pred cEEEEEccCCceEEEEEeccCCCCcEEEEECCC--CCEEEEEeCCCcEEEEEccC
Q 047837 591 KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPS--GSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 591 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~dg~i~iwd~~~ 643 (882)
.+.++|+++......+........|..+.-+|+ +..++-. ...|...|+..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 789999998766442332356678999999887 3333332 35788888876
No 480
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.06 E-value=5.3 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCEEEEeecCC-CCeEEEE
Q 047837 45 KPLCCVAMSRDGRYVAAGESGP-QPAVLVW 73 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~-d~~I~vw 73 (882)
+...+.+|||||++|+..+... .|.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 6788999999999999887522 1444444
No 481
>PRK13613 lipoprotein LpqB; Provisional
Probab=79.77 E-value=1e+02 Score=35.06 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=84.2
Q ss_pred CEEEEEEccCCCEEEEEeCCC-eEEEEeCccCcc----ceeeeccceecccCCceEEEEEecCCCEEEEEeC--CC--cE
Q 047837 522 AVTAVKFTCNGRKILSCSADR-SLVVRDVVETNS----AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ--DK--KI 592 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~--~v 592 (882)
.+.+.+.++++..+|....++ .+++..+..+.. ...... ....+.-.|.+++. +-+... ++ .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~-------~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl 435 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA-------DGRLTSPSWDGRGD-LWVVDRDPADPRLL 435 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec-------cCcccCCcCcCCCC-EEEecCCCCCceEE
Confidence 678999999999998777665 455544432222 111111 13466667777774 333322 22 25
Q ss_pred EEEEccCCceEEEEEeccCCC-CcEEEEECCCCCEEEEEeC---CCcEEEEEcc---CCe-EEE---EEccCCCCeEEEE
Q 047837 593 NSFSIAAGKLIRSFKQAKDFG-DPMKVTVDPSGSYLVCSYS---NKSICLYDFI---SGE-MVA---KAMGHGEVITGVT 661 (882)
Q Consensus 593 ~iwd~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~---dg~i~iwd~~---~~~-~~~---~~~~h~~~v~~l~ 661 (882)
++..- +|+... +......+ .|+.+..|+||-.+|.-.. .++|+|=-+. .|+ .+. .+..-...+.++.
T Consensus 436 ~v~~~-~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~ 513 (599)
T PRK13613 436 WLLQG-DGEPVE-VRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMS 513 (599)
T ss_pred EEEcC-CCcEEE-eeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeE
Confidence 55553 455432 22112223 7999999999988776433 2455554332 332 111 1222234589999
Q ss_pred ECCCCCEEEEEe-CCCeEEEEeC
Q 047837 662 FLPDCKHIVSVG-GDGLQRVKEK 683 (882)
Q Consensus 662 ~s~d~~~l~s~~-~dg~i~vwd~ 683 (882)
|..++.+++.+. .++...+|-+
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v 536 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYV 536 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEE
Confidence 999998877553 3334444443
No 482
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=79.70 E-value=36 Score=37.69 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=42.2
Q ss_pred CCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEcCEEEEEEcCcceeeeeeecCCcc-cceeEEEEccCCCEE
Q 047837 67 QPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGYIYLWNWRSAMLVMKLKANSSC-SAITSACFSSDAKFI 145 (882)
Q Consensus 67 d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~~~i~iWd~~~g~~~~~~~~~~~~-~~v~~l~fs~d~~~l 145 (882)
.+.+.+.|. .|..+..+.........+.+-++|.+|+..+..+..+|+. |+.+......... ..=..+.+.|+|++|
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L 204 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLL 204 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EE
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEE
Confidence 445777775 4555555543222222277789999998777999999974 6666665544310 012456677899988
Q ss_pred EEEC
Q 047837 146 VTAG 149 (882)
Q Consensus 146 ~~~~ 149 (882)
+.+.
T Consensus 205 ~l~~ 208 (477)
T PF05935_consen 205 ILAS 208 (477)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8766
No 483
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.48 E-value=88 Score=33.00 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=8.2
Q ss_pred CCCCEEEEEeCC
Q 047837 622 PSGSYLVCSYSN 633 (882)
Q Consensus 622 pdg~~l~~~~~d 633 (882)
.++++.+.|+.+
T Consensus 256 ~~~~Iyv~GG~~ 267 (346)
T TIGR03547 256 SNGVLLVAGGAN 267 (346)
T ss_pred ECCEEEEeecCC
Confidence 467777777753
No 484
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=78.68 E-value=66 Score=32.58 Aligned_cols=124 Identities=13% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CCccccCCCCCeEEEeece------------EEEEEECCCCceEEEEEecCCCCCeEEEEEcC---CCCEEEEeecCCCC
Q 047837 4 NHNIKKPDSSSKCAYVAGC------------VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSR---DGRYVAAGESGPQP 68 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~------------~v~vwd~~~~~~~~~l~~h~~~~~I~~va~sp---dg~~la~g~~~~d~ 68 (882)
|++++......++...+.. --+++|+.+++.+..=-...+ || ||++-+.=+. .+
T Consensus 155 NGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPh---------SPRWhdgrLwvldsg--tG 223 (335)
T TIGR03032 155 NGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPH---------SPRWYQGKLWLLNSG--RG 223 (335)
T ss_pred cceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCc---------CCcEeCCeEEEEECC--CC
Q ss_pred eEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc----------------------CEEEEEEcCcceeeeeeec
Q 047837 69 AVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG----------------------GYIYLWNWRSAMLVMKLKA 126 (882)
Q Consensus 69 ~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~----------------------~~i~iWd~~~g~~~~~~~~ 126 (882)
.|.-+|.++|+...... -.+....|+|. |++++++- .-|.|-|+.+|..+..++.
T Consensus 224 ev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~f 300 (335)
T TIGR03032 224 ELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRF 300 (335)
T ss_pred EEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEe
Q ss_pred CCcccceeEEEEccC
Q 047837 127 NSSCSAITSACFSSD 141 (882)
Q Consensus 127 ~~~~~~v~~l~fs~d 141 (882)
......+..+++-|.
T Consensus 301 eg~v~EifdV~vLPg 315 (335)
T TIGR03032 301 EGVIEEIYDVAVLPG 315 (335)
T ss_pred CCceeEEEEEEEecC
No 485
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.54 E-value=75 Score=31.66 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=91.9
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCC-CCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHS-AAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQG 569 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 569 (882)
+...+..|+-+.+-|+.....++..-.-.. ..+.++..+++..+++... .| +.+-|.........+..... ....
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-eg-vlivd~s~~ssp~~~gsyet--~~p~ 258 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-EG-VLIVDVSGPSSPTVFGSYET--SNPV 258 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-cc-eEEEecCCCCCceEeecccc--CCcc
Confidence 566677888899999987533332222122 3677777776654444332 33 77777775443333322111 1111
Q ss_pred ceEEEEEecCCCEEEEEeCCCcEEEEEccCCce---EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 570 TVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL---IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 570 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
.++.+.. .+++......+.-+.+-|+....- ...+. ........+..+ +.++..+..+ ...+-|....+.
T Consensus 259 ~~s~v~V--s~~~~Yvadga~gl~~idisnp~spfl~ss~~--t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~ 331 (370)
T COG5276 259 SISTVPV--SGEYAYVADGAKGLPIIDISNPPSPFLSSSLD--TAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSM 331 (370)
T ss_pred cccceec--ccceeeeeccccCceeEeccCCCCCchhcccc--CCCccccceEEe--cCeeEeccCC-ceEEEeCCChhh
Confidence 2222333 356666666666666666654221 11111 011122223222 4444444433 344444443333
Q ss_pred EEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 647 VAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 647 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.....+....+.+...+-+.+++.+...++-+.+|+..
T Consensus 332 m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 332 MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 33333333344444445566688888889999999853
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.44 E-value=28 Score=42.29 Aligned_cols=26 Identities=23% Similarity=0.040 Sum_probs=23.5
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 663 LPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 663 s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
+.++..++++..||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 88999999999999999999998643
No 487
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.36 E-value=1.5e+02 Score=35.22 Aligned_cols=164 Identities=12% Similarity=0.063 Sum_probs=95.9
Q ss_pred cCCCCEEEEEEc---c----CCCEEEEEeCCCeEEEEeCccCcc------c-eee-----eccceecccCCceEEEEEec
Q 047837 518 DHSAAVTAVKFT---C----NGRKILSCSADRSLVVRDVVETNS------A-YKI-----SRRHQQLASQGTVYDMDIDP 578 (882)
Q Consensus 518 ~h~~~v~~~~~s---~----~~~~l~s~~~dg~i~vwd~~~~~~------~-~~~-----~~~~~~~~~~~~v~~~~~sp 578 (882)
.-..+|..|+|. . ..++|++-. ...+.|+...-.+. . ..+ ...........+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 224555554 44577776221111 0 000 00000001234677899999
Q ss_pred C-CCEEEEEeCCCcEEEEEccCCc----eEEEEEe--cc-------CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 047837 579 T-MEVVITVGQDKKINSFSIAAGK----LIRSFKQ--AK-------DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 579 ~-~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~--~~-------~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~ 644 (882)
. .+.||+....|...|||+..+. ....+.. .+ .......+.|.++-..|++++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 4 4689999999999999992111 1111110 01 1123447889988888888754 47899999987
Q ss_pred eEEE--EEccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCC
Q 047837 645 EMVA--KAMGHGEVITGVTFLPD--CKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 645 ~~~~--~~~~h~~~v~~l~~s~d--~~~l~s~~~dg~i~vwd~~~ 685 (882)
.... ........|..+.-+++ +..++-.+ ..|...|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 6533 12224578888888887 33333322 5677777766
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.16 E-value=96 Score=32.73 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=82.0
Q ss_pred CcEEEEEcCCCceeEEEeec-------CCCCEEEEEEc--c-CCC-EEEEEeCCCeEEEEeCccCccceeeeccceeccc
Q 047837 499 RTIHLYDVKRNFDLIESIDD-------HSAAVTAVKFT--C-NGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~-------h~~~v~~~~~s--~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
.+|++|.+......+..+.. ....+..+++- + +|. +++....+|.+..|.+............-+.+.-
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46888877532122322221 12346777763 3 455 4556778899999888643221111111122233
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-----ceEEEEEeccCCCCcEEEEEC--CCCC-EE-EEEeCCCcEEE
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-----KLIRSFKQAKDFGDPMKVTVD--PSGS-YL-VCSYSNKSICL 638 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~s--pdg~-~l-~~~~~dg~i~i 638 (882)
...+..++......+|..+-++.-|.-|+.+.. +.+...........+-.|++- .+++ || ++.-.+++..|
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~V 286 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAV 286 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEE
Confidence 457889999998899999999988888887622 222222211234566677663 3432 44 45556778999
Q ss_pred EEccC-CeEEEEE
Q 047837 639 YDFIS-GEMVAKA 650 (882)
Q Consensus 639 wd~~~-~~~~~~~ 650 (882)
|+.+. ...+..+
T Consensus 287 y~r~~~~~~~g~f 299 (381)
T PF02333_consen 287 YDREGPNAYVGSF 299 (381)
T ss_dssp EESSTT--EEEEE
T ss_pred EecCCCCcccceE
Confidence 99875 3434443
No 489
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=77.99 E-value=1.2e+02 Score=38.22 Aligned_cols=375 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEcCEEEEEEcCcce
Q 047837 40 SHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGYIYLWNWRSAM 119 (882)
Q Consensus 40 ~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~~~i~iWd~~~g~ 119 (882)
.|. ..++.|..+++|..+=.= |+.++.||..+.+-.-.-..-...+..|+-.-||+..| -.-=.+-|+.++.
T Consensus 360 aH~--A~LTgv~~~~~ge~lRlH----d~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA--k~~~~l~nLSs~~ 431 (1774)
T PF11725_consen 360 AHI--AHLTGVHTDPDGEQLRLH----DDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA--KDDDTLVNLSSGQ 431 (1774)
T ss_pred HHH--HHhhccccCCCCCeEEee----cCceeeeccccceecCCCCcccchhhhhcccCCCceEe--cCCCceeecCCCC
Q ss_pred eeeeeecCCcccceeEEEEccCCCE-EEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeee
Q 047837 120 LVMKLKANSSCSAITSACFSSDAKF-IVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVIS 197 (882)
Q Consensus 120 ~~~~~~~~~~~~~v~~l~fs~d~~~-l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 197 (882)
.-...- ..+.+...+++++. +.++-+ ..+.+|++..-...........-.+..-....
T Consensus 432 ~~~~~v-----~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A--------------- 491 (1774)
T PF11725_consen 432 MSEAEV-----DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQA--------------- 491 (1774)
T ss_pred cchhhh-----hhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhh---------------
Q ss_pred cccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecc
Q 047837 198 ATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAG 277 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~ 277 (882)
.++.++++ .|+++..+|.+..=++...+.-.
T Consensus 492 -----------------------------------------------~~VgLs~d--rLFvADseGkLYsa~l~~~~~~~ 522 (1774)
T PF11725_consen 492 -----------------------------------------------QSVGLSND--RLFVADSEGKLYSADLPAAQDNE 522 (1774)
T ss_pred -----------------------------------------------hheeecCC--eEEEEeCCCCEEecccccccCCC
Q ss_pred cccccCcccC-------CCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCC-ceEEE---EEcccccccce
Q 047837 278 TLHYSEAKKC-------NGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGD-HSLYV---WDIHDVNEATR 346 (882)
Q Consensus 278 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d-~~i~i---wd~~~~~~~~~ 346 (882)
-.....+... -|+...+ ........+.+.++.=+..|..-++.-| ..-.+ |++.+.-....
T Consensus 523 ~~l~~~p~~~~~~~~~~~G~~~~V--------tGF~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N 594 (1774)
T PF11725_consen 523 PKLKLMPEPAYQLLGSALGGDHKV--------TGFISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDN 594 (1774)
T ss_pred cceEecccccccccccccccccee--------eccccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeEeec
Q ss_pred eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcce
Q 047837 347 CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHL 426 (882)
Q Consensus 347 ~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (882)
..-+.....+...-.. .=++.=..+=.||.|.-||-.+..-......+...+.--..+...+
T Consensus 595 ~~GL~~~~~p~~~~~l------------------dl~r~G~v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYV 656 (1774)
T PF11725_consen 595 TRGLPKPPAPAPHEIL------------------DLGRAGLVGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYV 656 (1774)
T ss_pred cCCCCCCCCCChHHhh------------------ccccccceeeccceEeeecCcchhhhhccCcCHHHHhccccCCceE
Q ss_pred EeeeeeeeeeeeeeccccCeEEEEEcCCCCE----------------------EEeeeccceEEEEEEecCCCCCcccee
Q 047837 427 VSAGIFERNTMETSVSTQGYRSMAVSSRGST----------------------LLLDAHDAEILSLSFSLSSKKDDVLEE 484 (882)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~ 484 (882)
+--|. +..+.+++.... .+-......|.+++.-...+
T Consensus 657 Lk~G~--------------vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~------- 715 (1774)
T PF11725_consen 657 LKDGK--------------VKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLEDRVITAFAVVNDNK------- 715 (1774)
T ss_pred ecCCc--------------eeeeecccCCCccccCCCcccccccccCCCCCCccccCCCcCcceeEEEEcCCc-------
Q ss_pred ccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 485 VTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 485 ~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
+++-...|.+.... ..+........+-.+.|..++.....++.|.....+..++
T Consensus 716 -------fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 716 -------FVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred -------eEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeEecCCCceeec
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.65 E-value=9.6 Score=43.37 Aligned_cols=73 Identities=10% Similarity=0.152 Sum_probs=44.4
Q ss_pred cCCCEEEEEeCCCcEEEEEccC----CceEEEEEec--------------------cCCCCcEEEEECC----CCCEEEE
Q 047837 578 PTMEVVITVGQDKKINSFSIAA----GKLIRSFKQA--------------------KDFGDPMKVTVDP----SGSYLVC 629 (882)
Q Consensus 578 p~~~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~--------------------~~~~~v~~~~~sp----dg~~l~~ 629 (882)
++...++.+..||.+....... +......... .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777778888777776653 2222211100 0123455667766 7789999
Q ss_pred EeCCCcEEEEEccCCeEEEEE
Q 047837 630 SYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~~~~~~~ 650 (882)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997665
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.76 E-value=12 Score=42.45 Aligned_cols=39 Identities=10% Similarity=0.335 Sum_probs=30.3
Q ss_pred CceEEEEEec----CCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 569 GTVYDMDIDP----TMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 569 ~~v~~~~~sp----~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
.....+++++ +..+|++.+.|+++|+||+.+++++.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3455666666 67899999999999999999999988765
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.34 E-value=51 Score=35.98 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=21.2
Q ss_pred CCCcEEEeecCCCe-EEEEeCCceEEEEEccc
Q 047837 310 IPNAIACQFSTSEK-LVVVYGDHSLYVWDIHD 340 (882)
Q Consensus 310 ~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~ 340 (882)
...+.++...+..+ +++...++.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34478888887765 66678899999999975
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.57 E-value=21 Score=33.13 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=25.7
Q ss_pred CeEEEEECCCC------CEEEEEeCCCeEEEEeCCCC
Q 047837 656 VITGVTFLPDC------KHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 656 ~v~~l~~s~d~------~~l~s~~~dg~i~vwd~~~~ 686 (882)
.|.+++|||-| -+|++...++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78899999944 47888999999999986553
No 494
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.38 E-value=19 Score=37.68 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=84.6
Q ss_pred ccccCCCCCeEEEeeceEEEEEECCCCceE-EEEEecCCCC----CeE-EEEEcCCCCEEEEeecCCCCeEEEE-ECC-C
Q 047837 6 NIKKPDSSSKCAYVAGCVLVVYDVDSSTQS-HLMVSHRMPK----PLC-CVAMSRDGRYVAAGESGPQPAVLVW-DCA-N 77 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~-~~l~~h~~~~----~I~-~va~spdg~~la~g~~~~d~~I~vw-d~~-t 77 (882)
+...|||. .+....|+.+.|+++.+.... +.+.... ++ .|+ .+-+-..|.-|.++ ..||.|.-| |+. +
T Consensus 226 llL~Pdg~-~LYv~~g~~~~v~~L~~r~l~~rkl~~ds-pg~~~~~Vte~l~lL~Gg~SLLv~--~~dG~vsQWFdvr~~ 301 (733)
T COG4590 226 LLLTPDGK-TLYVRTGSELVVALLDKRSLQIRKLVDDS-PGDSRHQVTEQLYLLSGGFSLLVV--HEDGLVSQWFDVRRD 301 (733)
T ss_pred hEECCCCC-EEEEecCCeEEEEeecccccchhhhhhcC-CCchHHHHHHHHHHHhCceeEEEE--cCCCceeeeeeeecC
Confidence 45678976 555566889999999866532 2221111 12 122 11112234445555 336677766 332 2
Q ss_pred ce----eeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCC
Q 047837 78 LA----FISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKK 151 (882)
Q Consensus 78 ~~----~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~ 151 (882)
++ .++.++-...+|..+.=-.+.+-+++-+ |++.++.....+.+-.-... ..+..++|||.+.+|++-..+
T Consensus 302 ~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~---~~~~~~~~Sp~~~~Ll~e~~g 378 (733)
T COG4590 302 GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY---QAPQLVAMSPNQAYLLSEDQG 378 (733)
T ss_pred CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh---cCcceeeeCcccchheeecCC
Confidence 22 1222222233444443333444555555 78877765554443322222 467789999999999998889
Q ss_pred cEEEEEcccCcc
Q 047837 152 HLKFWTIGSSAT 163 (882)
Q Consensus 152 ~i~iwd~~~~~~ 163 (882)
.++++.+++...
T Consensus 379 ki~~~~l~Nr~P 390 (733)
T COG4590 379 KIRLAQLENRNP 390 (733)
T ss_pred ceEEEEecCCCC
Confidence 999999887654
No 495
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=75.11 E-value=15 Score=23.72 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=20.8
Q ss_pred EccCCCCeEEEEECCCCCEEEEEe-CC--CeEEEE
Q 047837 650 AMGHGEVITGVTFLPDCKHIVSVG-GD--GLQRVK 681 (882)
Q Consensus 650 ~~~h~~~v~~l~~s~d~~~l~s~~-~d--g~i~vw 681 (882)
+......-....|||||++|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556677889999999887665 44 555555
No 496
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.93 E-value=18 Score=33.52 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.1
Q ss_pred CCCCccccCCCCCeEEEeeceEEEEEEC
Q 047837 2 KPNHNIKKPDSSSKCAYVAGCVLVVYDV 29 (882)
Q Consensus 2 ~~~~~~~~pd~~~~~~~~~~~~v~vwd~ 29 (882)
.++.++|+.||. ++++++..|.|.+.
T Consensus 6 ~~~~l~WS~Dg~--laV~t~~~v~IL~~ 31 (173)
T PF12657_consen 6 CPNALAWSEDGQ--LAVATGESVHILDP 31 (173)
T ss_pred CCcCeeECCCCC--EEEEcCCeEEEEec
Confidence 478899999974 99999999999943
No 497
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=74.61 E-value=1.1e+02 Score=31.47 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCEEEEeec----------------CCCCeEEEEECCCceeeEEeec--cc--------------------
Q 047837 47 LCCVAMSRDGRYVAAGES----------------GPQPAVLVWDCANLAFISELKG--HL-------------------- 88 (882)
Q Consensus 47 I~~va~spdg~~la~g~~----------------~~d~~I~vwd~~t~~~~~~l~~--h~-------------------- 88 (882)
...+.+.++|+.|++... -.|+.+..-|++||+.+..... |-
T Consensus 59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~ 138 (299)
T PF14269_consen 59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS 138 (299)
T ss_pred ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence 555777889988884321 0145677788889988765431 10
Q ss_pred -----cceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCc-ccceeE--EEEccCCCEEEEEC-CCcEEEEE
Q 047837 89 -----YGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSS-CSAITS--ACFSSDAKFIVTAG-KKHLKFWT 157 (882)
Q Consensus 89 -----~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~-~~~v~~--l~fs~d~~~l~~~~-~~~i~iwd 157 (882)
--+.+|...++|.||+|+- ..|.+.|-.+|+.+..+.+... ...... .++-.|-+++-... ++.|.++|
T Consensus 139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 0167788888999999998 9999999999999999976621 011111 23333444443333 36788887
Q ss_pred c
Q 047837 158 I 158 (882)
Q Consensus 158 ~ 158 (882)
=
T Consensus 219 N 219 (299)
T PF14269_consen 219 N 219 (299)
T ss_pred C
Confidence 5
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=74.04 E-value=80 Score=34.44 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 655 EVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 655 ~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
..|..|+..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999974
No 499
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.97 E-value=40 Score=27.00 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=30.4
Q ss_pred CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC
Q 047837 108 GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK 150 (882)
Q Consensus 108 ~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~ 150 (882)
|.+..||..+++..--+.+- .-.+.+++++|+.+++.+..
T Consensus 37 GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEEG
T ss_pred cCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEec
Confidence 78889999998765444433 56789999999999888865
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=72.29 E-value=1.2e+02 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=41.5
Q ss_pred CCCEEEEeecCCCCeEEEEECCC--ceeeEEeeccccceeEEEECCCCCEEEEEc-C--EEEEEEcCc
Q 047837 55 DGRYVAAGESGPQPAVLVWDCAN--LAFISELKGHLYGVECIAFSPDGEHLVTVG-G--YIYLWNWRS 117 (882)
Q Consensus 55 dg~~la~g~~~~d~~I~vwd~~t--~~~~~~l~~h~~~V~~lafspdg~~Las~~-~--~i~iWd~~~ 117 (882)
++++|+.|+. +| +.+-++.. ++..+.+ +...|+++...+.-+.|++.+ + .++.+++..
T Consensus 12 ~~~~lL~GTe--~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 12 DGKWLLVGTE--EG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CCcEEEEEeC--Cc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence 4468999976 54 66666654 3333333 567899999999988888877 4 499999843
Done!