Query 047837
Match_columns 882
No_of_seqs 824 out of 4079
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 05:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 7.8E-62 2.7E-66 559.2 66.8 528 3-684 21-610 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 7.5E-60 2.6E-64 542.6 71.5 546 4-717 20-571 (577)
3 2ymu_A WD-40 repeat protein; u 100.0 2.2E-59 7.4E-64 538.8 71.4 558 33-761 7-570 (577)
4 1nr0_A Actin interacting prote 100.0 3.1E-58 1.1E-62 529.2 64.7 530 45-716 19-601 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-55 4.7E-60 553.4 59.7 585 5-719 620-1242(1249)
6 1pgu_A Actin interacting prote 100.0 2.2E-54 7.5E-59 501.7 57.7 528 3-685 21-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-54 1.5E-58 539.9 60.8 548 34-714 607-1197(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 5.3E-53 1.8E-57 502.3 57.5 591 4-714 21-817 (902)
9 1pgu_A Actin interacting prote 100.0 1.9E-50 6.6E-55 468.5 55.5 520 40-717 16-605 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 8E-51 2.7E-55 483.5 53.3 552 39-691 14-738 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-44 7.3E-49 432.1 49.6 470 33-682 4-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 6.4E-43 2.2E-47 419.2 51.3 458 4-640 17-502 (814)
13 1vyh_C Platelet-activating fac 100.0 4.9E-40 1.7E-44 358.1 37.7 242 369-684 149-410 (410)
14 3ow8_A WD repeat-containing pr 100.0 2.8E-39 9.7E-44 339.1 40.4 286 308-684 30-320 (321)
15 4gqb_B Methylosome protein 50; 100.0 1.5E-39 5.2E-44 343.4 36.5 299 311-687 31-333 (344)
16 1got_B GT-beta; complex (GTP-b 100.0 5.6E-39 1.9E-43 340.7 41.1 287 240-682 54-340 (340)
17 4g56_B MGC81050 protein; prote 100.0 2.8E-39 9.7E-44 344.7 36.9 249 369-687 93-345 (357)
18 1vyh_C Platelet-activating fac 100.0 2.5E-39 8.6E-44 352.5 36.7 307 35-550 101-410 (410)
19 2ynn_A Coatomer subunit beta'; 100.0 2.6E-38 8.8E-43 329.7 41.7 287 239-685 11-302 (304)
20 1r5m_A SIR4-interacting protei 100.0 2.9E-38 1E-42 347.9 44.2 185 491-685 219-425 (425)
21 3ow8_A WD repeat-containing pr 100.0 1.5E-38 5.1E-43 333.6 39.0 286 36-550 26-320 (321)
22 1got_B GT-beta; complex (GTP-b 100.0 5.8E-38 2E-42 332.9 41.3 290 32-548 45-340 (340)
23 3iz6_a 40S ribosomal protein R 100.0 9.7E-39 3.3E-43 344.4 35.4 325 69-645 47-377 (380)
24 2ynn_A Coatomer subunit beta'; 100.0 7.1E-38 2.4E-42 326.4 40.7 292 33-551 4-302 (304)
25 2pbi_B Guanine nucleotide-bind 100.0 7.1E-38 2.4E-42 333.7 41.5 290 240-682 63-354 (354)
26 3iz6_a 40S ribosomal protein R 100.0 3.9E-38 1.3E-42 339.7 35.1 298 240-687 65-377 (380)
27 1gxr_A ESG1, transducin-like e 100.0 1.5E-36 5.1E-41 322.7 44.8 328 240-683 8-335 (337)
28 4g56_B MGC81050 protein; prote 100.0 5.5E-38 1.9E-42 334.7 32.5 307 22-554 26-346 (357)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.4E-37 2.2E-41 325.4 40.0 296 312-691 18-341 (345)
30 2pbi_B Guanine nucleotide-bind 100.0 1.3E-36 4.5E-41 323.9 41.0 289 33-548 55-354 (354)
31 4ery_A WD repeat-containing pr 100.0 2.1E-36 7.1E-41 317.4 40.5 243 369-684 64-311 (312)
32 1erj_A Transcriptional repress 100.0 1.8E-36 6.3E-41 328.2 41.1 306 309-686 63-390 (393)
33 2pm9_A Protein WEB1, protein t 100.0 5.9E-38 2E-42 344.4 28.9 343 241-686 12-415 (416)
34 4gqb_B Methylosome protein 50; 100.0 1.4E-36 4.9E-41 320.6 36.6 297 242-645 31-333 (344)
35 3frx_A Guanine nucleotide-bind 100.0 6.5E-36 2.2E-40 313.8 41.3 287 306-685 13-317 (319)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.9E-36 1.3E-40 319.3 40.0 220 369-650 104-342 (345)
37 3frx_A Guanine nucleotide-bind 100.0 9.4E-36 3.2E-40 312.6 39.5 288 33-552 8-318 (319)
38 4ery_A WD repeat-containing pr 100.0 2.4E-35 8.3E-40 309.3 41.5 291 32-550 13-311 (312)
39 1gxr_A ESG1, transducin-like e 100.0 7.9E-36 2.7E-40 317.1 38.3 322 45-598 10-336 (337)
40 2xzm_R RACK1; ribosome, transl 100.0 4.5E-35 1.5E-39 311.2 43.9 146 491-645 186-342 (343)
41 3vl1_A 26S proteasome regulato 100.0 3.3E-36 1.1E-40 330.9 34.6 321 245-685 60-419 (420)
42 1erj_A Transcriptional repress 100.0 3.5E-35 1.2E-39 318.2 41.3 317 23-551 41-389 (393)
43 3vl1_A 26S proteasome regulato 100.0 4.4E-36 1.5E-40 329.9 34.5 352 46-599 58-419 (420)
44 2hes_X YDR267CP; beta-propelle 100.0 2.7E-35 9.3E-40 310.7 38.9 297 308-685 12-328 (330)
45 1r5m_A SIR4-interacting protei 100.0 1.7E-35 5.7E-40 325.8 38.5 317 3-550 48-424 (425)
46 2pm9_A Protein WEB1, protein t 100.0 5.5E-37 1.9E-41 336.7 25.1 351 87-644 11-415 (416)
47 2hes_X YDR267CP; beta-propelle 100.0 5.4E-35 1.9E-39 308.4 38.0 305 30-551 2-328 (330)
48 3gre_A Serine/threonine-protei 100.0 4.4E-36 1.5E-40 331.5 30.6 387 6-682 33-437 (437)
49 2xzm_R RACK1; ribosome, transl 100.0 8.1E-35 2.8E-39 309.2 37.7 284 308-685 19-340 (343)
50 1k32_A Tricorn protease; prote 100.0 4.9E-34 1.7E-38 348.7 49.7 509 6-717 20-629 (1045)
51 2j04_B YDR362CP, TAU91; beta p 100.0 8.4E-36 2.9E-40 330.5 28.0 350 45-643 134-517 (524)
52 3v7d_B Cell division control p 100.0 1.1E-33 3.7E-38 315.0 44.1 343 33-640 112-460 (464)
53 4aow_A Guanine nucleotide-bind 100.0 7.5E-34 2.6E-38 302.3 38.6 294 30-553 26-339 (340)
54 4h5i_A Guanine nucleotide-exch 100.0 8.4E-35 2.9E-39 310.9 30.6 301 312-686 16-344 (365)
55 2j04_B YDR362CP, TAU91; beta p 100.0 9.3E-36 3.2E-40 330.1 23.7 331 250-687 170-519 (524)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-33 1.1E-37 308.9 43.7 310 248-686 124-443 (445)
57 3zwl_B Eukaryotic translation 100.0 5.6E-33 1.9E-37 299.3 43.9 308 34-646 24-349 (369)
58 4gga_A P55CDC, cell division c 100.0 1.6E-33 5.3E-38 308.6 39.8 287 314-690 109-400 (420)
59 4aow_A Guanine nucleotide-bind 100.0 4E-33 1.4E-37 296.7 41.8 289 308-687 36-339 (340)
60 3zwl_B Eukaryotic translation 100.0 4.4E-33 1.5E-37 300.1 41.7 287 240-687 31-348 (369)
61 3ei3_B DNA damage-binding prot 100.0 1.1E-33 3.7E-38 306.3 36.2 248 368-685 116-382 (383)
62 3k26_A Polycomb protein EED; W 100.0 1.3E-33 4.3E-38 304.0 35.9 293 308-684 16-365 (366)
63 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-33 1.6E-37 307.8 40.6 322 32-551 108-442 (445)
64 4h5i_A Guanine nucleotide-exch 100.0 6.5E-34 2.2E-38 304.0 32.3 206 368-643 131-343 (365)
65 4a11_B DNA excision repair pro 100.0 7.4E-34 2.5E-38 310.8 32.8 206 461-684 183-404 (408)
66 4e54_B DNA damage-binding prot 100.0 4.1E-34 1.4E-38 314.6 30.6 253 368-688 162-433 (435)
67 1sq9_A Antiviral protein SKI8; 100.0 1.8E-33 6.3E-38 306.4 35.5 297 306-686 12-396 (397)
68 4ggc_A P55CDC, cell division c 100.0 1.1E-32 3.7E-37 290.2 39.9 283 315-687 30-317 (318)
69 3v7d_B Cell division control p 100.0 2E-32 6.8E-37 304.8 41.8 329 245-681 126-459 (464)
70 2pm7_B Protein transport prote 100.0 6.2E-33 2.1E-37 287.9 34.8 250 366-684 5-284 (297)
71 1k8k_C P40, ARP2/3 complex 41 100.0 8.3E-33 2.8E-37 298.3 36.4 252 369-686 51-362 (372)
72 3dm0_A Maltose-binding peripla 100.0 2.2E-32 7.5E-37 319.9 42.8 161 462-642 515-692 (694)
73 1k32_A Tricorn protease; prote 100.0 8.3E-32 2.8E-36 329.0 49.7 482 5-687 57-639 (1045)
74 3i2n_A WD repeat-containing pr 100.0 5.8E-33 2E-37 297.6 33.4 290 308-687 16-355 (357)
75 3dm0_A Maltose-binding peripla 100.0 1.9E-32 6.5E-37 320.4 40.2 288 305-684 377-692 (694)
76 4aez_A CDC20, WD repeat-contai 100.0 3.3E-32 1.1E-36 296.2 38.1 284 313-691 96-386 (401)
77 3odt_A Protein DOA1; ubiquitin 100.0 7E-32 2.4E-36 283.3 39.1 288 306-692 14-303 (313)
78 3ei3_B DNA damage-binding prot 100.0 1.2E-32 4E-37 298.2 33.7 314 26-551 57-382 (383)
79 1sq9_A Antiviral protein SKI8; 100.0 1.8E-32 6.3E-37 298.5 34.9 316 35-552 9-396 (397)
80 3i2n_A WD repeat-containing pr 100.0 1.8E-32 6.2E-37 293.8 34.3 308 36-602 12-356 (357)
81 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-32 4.6E-37 296.7 33.2 312 38-554 4-364 (372)
82 3dwl_C Actin-related protein 2 100.0 1.5E-33 5.2E-38 304.6 24.5 251 368-683 53-377 (377)
83 2j04_A TAU60, YPL007P, hypothe 100.0 2.8E-34 9.6E-39 307.3 17.6 324 45-588 16-350 (588)
84 3k26_A Polycomb protein EED; W 100.0 7.9E-33 2.7E-37 297.7 28.5 330 36-550 12-365 (366)
85 4e54_B DNA damage-binding prot 100.0 2.1E-32 7.1E-37 301.0 32.2 313 33-553 110-432 (435)
86 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-31 9.8E-36 278.6 38.1 290 28-555 3-300 (313)
87 4a11_B DNA excision repair pro 100.0 7.7E-32 2.6E-36 294.8 33.1 316 308-692 41-372 (408)
88 3bg1_A Protein SEC13 homolog; 100.0 8.7E-33 3E-37 289.5 24.3 250 367-684 10-292 (316)
89 2j04_A TAU60, YPL007P, hypothe 100.0 6.8E-33 2.3E-37 296.7 21.2 317 242-716 16-351 (588)
90 3dwl_C Actin-related protein 2 100.0 1.2E-32 4.2E-37 297.5 23.3 306 39-549 8-377 (377)
91 4gga_A P55CDC, cell division c 100.0 1E-30 3.5E-35 286.2 38.3 297 245-662 109-414 (420)
92 1p22_A F-BOX/WD-repeat protein 100.0 8.3E-31 2.8E-35 288.5 35.7 280 309-694 132-423 (435)
93 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-30 4.7E-35 278.1 35.9 263 367-690 8-342 (351)
94 4aez_A CDC20, WD repeat-contai 100.0 9.6E-31 3.3E-35 284.6 35.2 285 246-651 98-388 (401)
95 1yfq_A Cell cycle arrest prote 100.0 1E-30 3.5E-35 278.3 33.1 281 308-683 9-322 (342)
96 3dw8_B Serine/threonine-protei 100.0 2.2E-30 7.6E-35 286.9 34.0 347 241-683 28-444 (447)
97 2w18_A PALB2, fancn, partner a 100.0 4.4E-30 1.5E-34 257.7 32.6 275 315-683 44-355 (356)
98 4ggc_A P55CDC, cell division c 100.0 1.1E-29 3.9E-34 267.1 37.5 280 245-645 29-317 (318)
99 3dw8_B Serine/threonine-protei 100.0 1.7E-30 5.7E-35 288.0 30.0 263 369-689 27-377 (447)
100 2pm7_B Protein transport prote 100.0 1E-29 3.4E-34 263.7 32.9 241 458-717 3-276 (297)
101 3jrp_A Fusion protein of prote 100.0 7.3E-30 2.5E-34 276.0 33.1 250 367-685 8-287 (379)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-30 8.2E-35 281.8 28.5 294 315-686 39-343 (402)
103 3gre_A Serine/threonine-protei 100.0 3.8E-30 1.3E-34 283.9 29.0 344 247-706 33-418 (437)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-29 1.7E-33 275.6 37.8 302 313-685 7-391 (450)
105 3mmy_A MRNA export factor; mRN 100.0 3E-29 1E-33 269.9 33.3 287 307-686 36-347 (368)
106 4gq1_A NUP37; propeller, trans 100.0 2.1E-29 7.2E-34 272.4 30.7 317 312-684 17-388 (393)
107 3mmy_A MRNA export factor; mRN 100.0 2.8E-29 9.7E-34 270.1 31.4 307 26-550 23-345 (368)
108 2w18_A PALB2, fancn, partner a 100.0 1.6E-28 5.4E-33 246.5 34.1 162 461-641 175-355 (356)
109 3f3f_A Nucleoporin SEH1; struc 100.0 4.9E-29 1.7E-33 266.1 32.5 310 36-555 5-341 (351)
110 1p22_A F-BOX/WD-repeat protein 100.0 8.8E-29 3E-33 272.3 35.0 287 248-663 138-433 (435)
111 3bws_A Protein LP49; two-domai 100.0 1.7E-27 5.9E-32 262.4 44.5 281 313-685 125-432 (433)
112 3bg1_A Protein SEC13 homolog; 100.0 1.9E-29 6.4E-34 264.1 27.1 250 36-402 7-293 (316)
113 3jrp_A Fusion protein of prote 100.0 9.1E-29 3.1E-33 267.3 32.8 261 32-509 1-288 (379)
114 2xyi_A Probable histone-bindin 100.0 2.7E-28 9.3E-33 267.5 35.9 260 367-686 125-411 (430)
115 1yfq_A Cell cycle arrest prote 100.0 1E-28 3.5E-33 262.8 31.0 277 367-718 8-315 (342)
116 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-28 3.7E-33 268.7 31.1 273 373-710 37-328 (402)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5E-28 1.7E-32 267.4 35.7 208 369-642 148-390 (450)
118 3vu4_A KMHSV2; beta-propeller 100.0 6.9E-28 2.3E-32 256.6 35.0 304 26-553 3-338 (355)
119 3vu4_A KMHSV2; beta-propeller 100.0 6.2E-28 2.1E-32 256.9 33.8 285 308-687 17-338 (355)
120 3jro_A Fusion protein of prote 100.0 9.8E-29 3.4E-33 290.2 28.1 253 366-687 5-287 (753)
121 1l0q_A Surface layer protein; 100.0 2.4E-26 8.3E-31 249.4 43.4 333 57-630 3-365 (391)
122 1l0q_A Surface layer protein; 100.0 1.8E-26 6.1E-31 250.4 41.7 319 21-586 11-365 (391)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-28 8.9E-33 259.1 25.9 199 462-683 123-331 (343)
124 3bws_A Protein LP49; two-domai 100.0 2.2E-26 7.6E-31 253.5 37.9 309 23-550 102-431 (433)
125 1nir_A Nitrite reductase; hemo 100.0 9E-26 3.1E-30 252.5 37.9 347 6-607 143-522 (543)
126 3lrv_A PRE-mRNA-splicing facto 100.0 7.3E-27 2.5E-31 248.0 26.2 181 501-689 106-296 (343)
127 4gq1_A NUP37; propeller, trans 100.0 1.3E-26 4.4E-31 250.5 27.5 284 245-642 93-388 (393)
128 2xyi_A Probable histone-bindin 99.9 1.1E-25 3.7E-30 246.8 33.7 265 306-644 124-411 (430)
129 1nir_A Nitrite reductase; hemo 99.9 2.7E-25 9.3E-30 248.6 36.8 341 248-695 144-524 (543)
130 3jro_A Fusion protein of prote 99.9 9.5E-26 3.2E-30 264.8 30.2 244 459-719 4-278 (753)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.9E-24 1E-28 233.2 28.6 311 244-667 65-410 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 6.5E-24 2.2E-28 250.9 33.8 371 45-599 37-459 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-23 6.7E-28 226.7 32.8 306 314-708 66-410 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 5E-23 1.7E-27 242.7 31.5 122 3-126 19-152 (723)
135 2ecf_A Dipeptidyl peptidase IV 99.9 6.8E-23 2.3E-27 242.2 31.6 382 243-686 38-460 (741)
136 2z3z_A Dipeptidyl aminopeptida 99.9 5.6E-22 1.9E-26 232.8 34.8 369 47-606 28-441 (706)
137 2z3z_A Dipeptidyl aminopeptida 99.9 4.6E-22 1.6E-26 233.6 29.9 379 244-687 28-437 (706)
138 3u4y_A Uncharacterized protein 99.9 5.9E-21 2E-25 201.6 33.6 279 317-687 4-306 (331)
139 3u4y_A Uncharacterized protein 99.9 6.1E-21 2.1E-25 201.5 33.6 287 7-405 4-307 (331)
140 1ri6_A Putative isomerase YBHE 99.9 1.1E-20 3.9E-25 200.5 35.0 279 323-684 6-307 (343)
141 1xfd_A DIP, dipeptidyl aminope 99.9 9.6E-22 3.3E-26 231.7 27.4 319 313-713 19-427 (723)
142 1pby_B Quinohemoprotein amine 99.9 7E-20 2.4E-24 193.9 34.6 105 57-163 2-127 (337)
143 2ojh_A Uncharacterized protein 99.9 4.6E-21 1.6E-25 198.7 23.2 255 328-676 19-293 (297)
144 3vgz_A Uncharacterized protein 99.9 2.8E-19 9.6E-24 190.6 37.0 280 313-676 43-335 (353)
145 1ri6_A Putative isomerase YBHE 99.9 1.9E-19 6.6E-24 191.0 33.6 271 312-667 39-335 (343)
146 2ojh_A Uncharacterized protein 99.9 2.4E-20 8.1E-25 193.4 24.9 232 461-715 38-291 (297)
147 1pby_B Quinohemoprotein amine 99.9 2.4E-20 8.1E-25 197.5 24.9 277 323-692 3-317 (337)
148 3vgz_A Uncharacterized protein 99.9 2.4E-19 8.2E-24 191.1 32.0 270 371-714 41-332 (353)
149 1z68_A Fibroblast activation p 99.9 7.3E-20 2.5E-24 215.2 29.6 150 4-158 19-198 (719)
150 1z68_A Fibroblast activation p 99.9 8.8E-20 3E-24 214.5 29.0 390 49-607 20-451 (719)
151 3hfq_A Uncharacterized protein 99.8 4.1E-18 1.4E-22 181.0 37.6 249 370-684 39-316 (347)
152 3hfq_A Uncharacterized protein 99.8 9.2E-18 3.1E-22 178.2 36.1 263 313-647 42-323 (347)
153 3o4h_A Acylamino-acid-releasin 99.8 5.8E-19 2E-23 201.8 28.1 174 491-685 125-315 (582)
154 1jmx_B Amine dehydrogenase; ox 99.8 4.7E-18 1.6E-22 180.7 32.2 298 4-409 3-332 (349)
155 1jmx_B Amine dehydrogenase; ox 99.8 2E-18 6.9E-23 183.6 27.3 243 376-692 5-332 (349)
156 4a5s_A Dipeptidyl peptidase 4 99.8 5.2E-18 1.8E-22 199.1 33.1 392 46-607 18-457 (740)
157 4a5s_A Dipeptidyl peptidase 4 99.8 1E-17 3.5E-22 196.6 35.2 152 4-159 20-201 (740)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 4.8E-19 1.6E-23 192.6 21.0 205 465-686 37-279 (434)
159 3scy_A Hypothetical bacterial 99.8 3.7E-17 1.3E-21 174.6 34.1 277 314-663 53-360 (361)
160 3scy_A Hypothetical bacterial 99.8 1.2E-16 4.2E-21 170.5 35.9 251 370-684 49-336 (361)
161 3o4h_A Acylamino-acid-releasin 99.8 1.6E-18 5.4E-23 198.2 21.0 255 370-712 21-298 (582)
162 2oiz_A Aromatic amine dehydrog 99.8 1.4E-16 4.9E-21 168.8 33.2 303 251-667 13-360 (361)
163 2oit_A Nucleoporin 214KDA; NH2 99.8 1.2E-17 4.1E-22 181.5 24.3 257 370-684 36-332 (434)
164 3pe7_A Oligogalacturonate lyas 99.8 6.4E-17 2.2E-21 174.8 29.0 120 24-147 12-141 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-16 4.8E-21 170.0 29.9 188 497-686 117-342 (365)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.8E-16 6.2E-21 169.1 26.8 155 3-159 42-223 (365)
167 3pe7_A Oligogalacturonate lyas 99.8 4.2E-16 1.4E-20 168.3 29.8 300 316-683 41-380 (388)
168 3c5m_A Oligogalacturonate lyas 99.7 7.9E-17 2.7E-21 174.6 22.8 119 24-150 12-136 (396)
169 2oiz_A Aromatic amine dehydrog 99.7 5E-15 1.7E-19 156.9 35.2 132 21-160 30-182 (361)
170 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-15 5.4E-20 159.1 30.6 209 464-686 90-323 (329)
171 3c5m_A Oligogalacturonate lyas 99.7 3.9E-16 1.3E-20 169.2 24.4 92 70-163 12-114 (396)
172 1qks_A Cytochrome CD1 nitrite 99.7 8E-14 2.7E-18 155.0 41.2 153 3-161 156-330 (567)
173 1q7f_A NHL, brain tumor CG1071 99.7 9.2E-15 3.1E-19 150.2 31.3 249 369-687 28-282 (286)
174 1qks_A Cytochrome CD1 nitrite 99.7 2.1E-13 7.3E-18 151.6 39.4 341 249-694 163-547 (567)
175 3azo_A Aminopeptidase; POP fam 99.6 1.8E-14 6.1E-19 167.5 27.7 252 38-401 19-322 (662)
176 3azo_A Aminopeptidase; POP fam 99.6 1.9E-14 6.5E-19 167.3 25.7 337 243-683 25-409 (662)
177 1q7f_A NHL, brain tumor CG1071 99.6 3.1E-13 1.1E-17 138.7 30.9 247 311-644 30-281 (286)
178 4a2l_A BT_4663, two-component 99.6 5.5E-10 1.9E-14 132.1 60.0 532 11-684 96-658 (795)
179 2gop_A Trilobed protease; beta 99.6 6.7E-13 2.3E-17 140.6 30.4 124 11-149 23-188 (347)
180 3e5z_A Putative gluconolactona 99.6 4.9E-13 1.7E-17 138.0 27.1 232 371-685 28-286 (296)
181 2gop_A Trilobed protease; beta 99.6 5.2E-13 1.8E-17 141.5 27.9 162 499-684 152-330 (347)
182 2z2n_A Virginiamycin B lyase; 99.6 2.3E-11 7.8E-16 125.6 38.9 279 311-685 15-295 (299)
183 3dsm_A Uncharacterized protein 99.6 6.1E-13 2.1E-17 139.0 27.0 270 330-693 16-309 (328)
184 2dg1_A DRP35, lactonase; beta 99.6 9.2E-13 3.1E-17 138.6 28.6 226 462-710 42-294 (333)
185 3fvz_A Peptidyl-glycine alpha- 99.6 7.1E-13 2.4E-17 138.8 26.6 206 499-707 69-303 (329)
186 2dg1_A DRP35, lactonase; beta 99.6 2.3E-12 8E-17 135.5 30.7 267 313-675 8-300 (333)
187 4a2l_A BT_4663, two-component 99.6 5.7E-09 1.9E-13 123.3 63.1 532 9-686 49-615 (795)
188 3sjl_D Methylamine dehydrogena 99.6 6.8E-12 2.3E-16 130.1 32.9 118 6-127 38-179 (386)
189 3dsm_A Uncharacterized protein 99.6 2.1E-12 7.3E-17 134.8 29.1 268 22-410 17-309 (328)
190 1rwi_B Serine/threonine-protei 99.6 6.9E-13 2.4E-17 134.8 24.7 241 372-688 25-267 (270)
191 3no2_A Uncharacterized protein 99.6 1.6E-12 5.4E-17 131.4 27.1 220 381-673 3-231 (276)
192 2xdw_A Prolyl endopeptidase; a 99.5 7.2E-13 2.5E-17 154.7 27.9 246 369-687 123-416 (710)
193 3e5z_A Putative gluconolactona 99.5 4.2E-12 1.4E-16 130.9 27.7 230 459-712 22-273 (296)
194 2xdw_A Prolyl endopeptidase; a 99.5 7.6E-12 2.6E-16 146.0 32.7 150 9-160 80-268 (710)
195 2mad_H Methylamine dehydrogena 99.5 6.1E-11 2.1E-15 125.3 36.3 285 8-408 28-356 (373)
196 3sjl_D Methylamine dehydrogena 99.5 1.9E-11 6.6E-16 126.7 30.7 209 491-706 150-384 (386)
197 2z2n_A Virginiamycin B lyase; 99.5 3E-10 1E-14 117.1 37.7 280 243-645 16-297 (299)
198 2bkl_A Prolyl endopeptidase; m 99.5 1.1E-12 3.9E-17 152.5 20.8 246 368-687 118-399 (695)
199 2mad_H Methylamine dehydrogena 99.5 4.7E-10 1.6E-14 118.5 38.5 287 249-650 28-357 (373)
200 3v9f_A Two-component system se 99.5 3.3E-08 1.1E-12 116.5 58.4 534 10-685 73-656 (781)
201 2qc5_A Streptogramin B lactona 99.4 5.8E-10 2E-14 115.0 36.6 278 310-683 19-298 (300)
202 3no2_A Uncharacterized protein 99.4 1.3E-11 4.4E-16 124.7 23.0 193 489-693 5-203 (276)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 6.5E-11 2.2E-15 123.1 28.1 242 372-685 19-299 (314)
204 2bkl_A Prolyl endopeptidase; m 99.4 1.1E-11 3.7E-16 144.3 23.9 243 313-646 123-400 (695)
205 3c75_H MADH, methylamine dehyd 99.4 1.6E-10 5.4E-15 122.3 30.1 275 22-409 99-409 (426)
206 3g4e_A Regucalcin; six bladed 99.4 1.5E-10 5.1E-15 119.0 29.3 227 373-674 15-261 (297)
207 2qc5_A Streptogramin B lactona 99.4 1.3E-09 4.3E-14 112.4 36.3 240 371-685 20-260 (300)
208 3v9f_A Two-component system se 99.4 3E-07 1E-11 108.4 60.8 514 8-687 24-570 (781)
209 1rwi_B Serine/threonine-protei 99.4 7.2E-11 2.5E-15 119.7 24.6 220 466-708 25-246 (270)
210 1xip_A Nucleoporin NUP159; bet 99.3 3.5E-11 1.2E-15 125.4 19.9 173 466-673 39-232 (388)
211 1yr2_A Prolyl oligopeptidase; 99.3 4.3E-11 1.5E-15 140.2 22.7 179 500-687 244-443 (741)
212 3hrp_A Uncharacterized protein 99.3 7.7E-10 2.6E-14 118.7 29.4 240 371-683 131-408 (409)
213 1yr2_A Prolyl oligopeptidase; 99.3 3.4E-10 1.2E-14 132.6 27.3 241 313-645 165-443 (741)
214 4a0p_A LRP6, LRP-6, low-densit 99.3 6E-06 2E-10 93.0 63.4 517 14-690 7-554 (628)
215 3c75_H MADH, methylamine dehyd 99.3 2.3E-09 7.9E-14 113.4 30.1 290 331-706 99-423 (426)
216 2ghs_A AGR_C_1268P; regucalcin 99.3 3.5E-09 1.2E-13 110.3 30.1 221 374-673 52-290 (326)
217 3s94_A LRP-6, low-density lipo 99.3 2.8E-06 9.4E-11 95.6 55.7 516 15-686 11-552 (619)
218 3g4e_A Regucalcin; six bladed 99.2 4.9E-09 1.7E-13 107.6 29.5 229 463-713 11-259 (297)
219 3hrp_A Uncharacterized protein 99.2 1.8E-09 6.2E-14 115.8 26.6 261 3-338 133-408 (409)
220 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 3.3E-09 1.1E-13 110.1 27.7 222 465-708 18-280 (314)
221 1mda_H Methylamine dehydrogena 99.2 5.1E-10 1.7E-14 116.6 20.7 250 23-345 47-351 (368)
222 1xip_A Nucleoporin NUP159; bet 99.2 1.6E-10 5.5E-15 120.4 16.2 179 522-716 39-234 (388)
223 3iuj_A Prolyl endopeptidase; h 99.2 4.3E-09 1.5E-13 122.0 28.7 178 499-687 208-407 (693)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.2E-08 1.1E-12 105.6 33.3 314 252-682 52-375 (376)
225 1kb0_A Quinohemoprotein alcoho 99.2 1.7E-08 5.8E-13 115.6 32.9 169 500-672 284-537 (677)
226 1yiq_A Quinohemoprotein alcoho 99.2 1E-08 3.5E-13 117.7 30.8 188 525-713 239-535 (689)
227 1yiq_A Quinohemoprotein alcoho 99.2 1.3E-08 4.5E-13 116.7 31.8 171 500-674 276-538 (689)
228 3s94_A LRP-6, low-density lipo 99.2 1.5E-05 5E-10 89.8 55.1 151 5-161 44-203 (619)
229 3dr2_A Exported gluconolactona 99.2 1.3E-08 4.4E-13 104.9 28.1 189 464-680 85-302 (305)
230 2qe8_A Uncharacterized protein 99.2 2.9E-09 1E-13 111.8 23.5 278 312-681 18-317 (343)
231 1kb0_A Quinohemoprotein alcoho 99.2 1.3E-08 4.6E-13 116.5 30.8 188 525-713 247-537 (677)
232 3dr2_A Exported gluconolactona 99.1 1.4E-08 4.9E-13 104.6 26.6 232 455-711 35-292 (305)
233 2ghs_A AGR_C_1268P; regucalcin 99.1 5.1E-08 1.7E-12 101.4 30.5 220 466-710 50-286 (326)
234 4a0p_A LRP6, LRP-6, low-densit 99.1 5.6E-05 1.9E-09 85.1 60.2 150 5-161 41-198 (628)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2E-07 6.7E-12 99.4 31.6 312 56-548 53-375 (376)
236 1mda_H Methylamine dehydrogena 99.0 9.6E-09 3.3E-13 106.9 20.3 202 497-704 94-365 (368)
237 3hxj_A Pyrrolo-quinoline quino 99.0 1.5E-08 5E-13 106.1 22.1 176 492-686 150-325 (330)
238 2qe8_A Uncharacterized protein 99.0 1.5E-08 5.3E-13 106.2 21.5 233 465-712 17-307 (343)
239 1fwx_A Nitrous oxide reductase 99.0 2.4E-08 8.3E-13 107.8 22.4 93 58-151 15-156 (595)
240 2ece_A 462AA long hypothetical 99.0 8.6E-07 2.9E-11 92.3 31.8 139 23-163 44-240 (462)
241 1fwx_A Nitrous oxide reductase 99.0 3.1E-08 1.1E-12 106.9 20.5 146 529-688 245-434 (595)
242 2ece_A 462AA long hypothetical 98.9 1.5E-07 5.3E-12 97.8 24.6 221 490-714 97-399 (462)
243 2hz6_A Endoplasmic reticulum t 98.9 3.6E-10 1.2E-14 119.7 4.8 192 491-698 11-205 (369)
244 3iuj_A Prolyl endopeptidase; h 98.9 4.4E-08 1.5E-12 113.4 20.5 201 463-686 127-360 (693)
245 3hxj_A Pyrrolo-quinoline quino 98.9 3.7E-08 1.3E-12 102.9 17.7 128 21-162 39-167 (330)
246 2hz6_A Endoplasmic reticulum t 98.9 8.8E-10 3E-14 116.7 4.2 160 491-667 51-216 (369)
247 2iwa_A Glutamine cyclotransfer 98.8 4.7E-07 1.6E-11 88.6 22.1 152 3-163 23-184 (266)
248 1kv9_A Type II quinohemoprotei 98.8 1.3E-06 4.5E-11 99.9 29.5 187 525-712 234-517 (668)
249 1kv9_A Type II quinohemoprotei 98.8 2.5E-06 8.5E-11 97.6 30.9 170 500-673 271-520 (668)
250 1npe_A Nidogen, entactin; glyc 98.8 2E-05 6.9E-10 78.9 33.2 218 466-707 37-262 (267)
251 2iwa_A Glutamine cyclotransfer 98.7 3E-06 1E-10 82.9 23.3 184 491-686 34-238 (266)
252 1npe_A Nidogen, entactin; glyc 98.7 6.5E-05 2.2E-09 75.2 34.1 166 491-667 93-263 (267)
253 1flg_A Protein (quinoprotein e 98.7 1.5E-05 5E-10 89.2 31.2 187 525-713 250-546 (582)
254 2ad6_A Methanol dehydrogenase 98.7 5E-06 1.7E-10 93.0 27.4 185 526-712 240-523 (571)
255 2ad6_A Methanol dehydrogenase 98.7 1.7E-05 5.9E-10 88.6 31.1 166 500-670 273-522 (571)
256 3nol_A Glutamine cyclotransfer 98.6 2.7E-06 9.2E-11 81.9 19.6 172 491-674 55-244 (262)
257 1w6s_A Methanol dehydrogenase 98.6 2.3E-05 7.8E-10 87.4 29.8 186 526-713 246-533 (599)
258 3nol_A Glutamine cyclotransfer 98.6 2.2E-06 7.4E-11 82.6 18.5 149 4-163 46-204 (262)
259 2fp8_A Strictosidine synthase; 98.5 4.2E-05 1.4E-09 79.1 27.8 180 492-685 94-313 (322)
260 1w6s_A Methanol dehydrogenase 98.5 0.0001 3.5E-09 82.2 31.6 170 499-673 278-535 (599)
261 2fp8_A Strictosidine synthase; 98.5 5.5E-05 1.9E-09 78.2 27.8 152 2-160 20-216 (322)
262 2p4o_A Hypothetical protein; p 98.5 8.4E-05 2.9E-09 76.1 28.8 170 500-676 96-279 (306)
263 3nok_A Glutaminyl cyclase; bet 98.5 1.9E-05 6.4E-10 76.1 21.7 172 491-674 67-254 (268)
264 1flg_A Protein (quinoprotein e 98.5 7E-05 2.4E-09 83.7 30.0 170 499-673 291-548 (582)
265 3mbr_X Glutamine cyclotransfer 98.5 1.5E-05 5.2E-10 76.1 20.7 149 4-163 24-182 (243)
266 3nok_A Glutaminyl cyclase; bet 98.4 4.1E-05 1.4E-09 73.7 21.8 134 491-630 108-253 (268)
267 3mbr_X Glutamine cyclotransfer 98.4 0.00012 4E-09 70.0 23.7 171 491-674 33-223 (243)
268 3qqz_A Putative uncharacterize 98.4 0.00043 1.5E-08 67.3 28.2 205 462-682 24-250 (255)
269 3tc9_A Hypothetical hydrolase; 98.3 0.00015 5.1E-09 77.8 26.5 153 2-160 138-301 (430)
270 4hw6_A Hypothetical protein, I 98.3 0.00013 4.4E-09 78.3 25.7 152 3-159 141-303 (433)
271 3ott_A Two-component system se 98.3 0.014 4.8E-07 68.1 52.3 494 9-687 28-547 (758)
272 2p4o_A Hypothetical protein; p 98.3 0.00029 9.9E-09 72.0 26.3 150 3-160 34-198 (306)
273 1ijq_A LDL receptor, low-densi 98.3 0.0012 4E-08 67.7 30.6 139 15-159 3-151 (316)
274 3v65_B Low-density lipoprotein 98.3 0.0011 3.8E-08 70.0 31.0 142 13-160 87-234 (386)
275 3v64_C Agrin; beta propeller, 98.2 0.0033 1.1E-07 65.3 33.7 141 14-160 45-191 (349)
276 1k3i_A Galactose oxidase precu 98.2 0.00026 8.8E-09 81.1 26.3 131 498-632 368-530 (656)
277 3v64_C Agrin; beta propeller, 98.2 0.003 1E-07 65.6 31.6 205 466-692 74-282 (349)
278 3ei3_A DNA damage-binding prot 98.2 0.031 1.1E-06 67.3 62.3 175 499-685 807-999 (1158)
279 3kya_A Putative phosphatase; s 98.2 0.0006 2.1E-08 73.0 26.3 156 3-160 141-341 (496)
280 3p5b_L Low density lipoprotein 98.2 0.0036 1.2E-07 66.4 32.4 142 13-160 83-234 (400)
281 1k3i_A Galactose oxidase precu 98.1 0.00042 1.4E-08 79.3 26.5 113 49-162 190-325 (656)
282 3qqz_A Putative uncharacterize 98.1 0.00035 1.2E-08 67.9 21.6 153 5-161 31-205 (255)
283 3sov_A LRP-6, low-density lipo 98.1 0.0026 8.9E-08 64.9 29.3 141 14-160 5-154 (318)
284 1ijq_A LDL receptor, low-densi 98.1 0.0063 2.1E-07 62.2 32.1 152 491-651 91-246 (316)
285 3ott_A Two-component system se 98.1 0.033 1.1E-06 65.0 57.4 491 15-685 114-626 (758)
286 3p5b_L Low density lipoprotein 98.1 0.0079 2.7E-07 63.7 33.5 162 491-660 173-337 (400)
287 3v65_B Low-density lipoprotein 98.1 0.0055 1.9E-07 64.6 32.2 205 466-692 117-325 (386)
288 3tc9_A Hypothetical hydrolase; 98.1 0.0014 4.9E-08 70.2 27.3 157 522-684 227-429 (430)
289 3sov_A LRP-6, low-density lipo 98.1 0.0032 1.1E-07 64.2 28.5 207 465-692 35-245 (318)
290 2xbg_A YCF48-like protein; pho 98.1 0.0094 3.2E-07 61.2 32.1 157 517-683 159-320 (327)
291 2xzh_A Clathrin heavy chain 1; 98.0 0.0092 3.2E-07 58.7 28.6 243 5-342 71-334 (365)
292 3amr_A 3-phytase; beta-propell 98.0 0.0013 4.6E-08 66.1 23.6 187 491-684 42-262 (355)
293 2xe4_A Oligopeptidase B; hydro 98.0 0.00037 1.3E-08 81.0 22.1 197 466-683 175-398 (751)
294 3amr_A 3-phytase; beta-propell 97.9 0.0063 2.1E-07 61.3 26.2 157 492-651 90-272 (355)
295 4hw6_A Hypothetical protein, I 97.9 0.0024 8.2E-08 68.4 24.8 185 492-684 155-373 (433)
296 2xe4_A Oligopeptidase B; hydro 97.9 0.00051 1.7E-08 79.8 20.6 155 522-685 175-354 (751)
297 3m0c_C LDL receptor, low-densi 97.9 0.01 3.5E-07 68.3 30.8 141 14-160 396-546 (791)
298 1bpo_A Protein (clathrin); cla 97.8 0.023 7.9E-07 58.3 28.5 244 4-342 69-333 (494)
299 3ei3_A DNA damage-binding prot 97.8 0.14 4.7E-06 61.8 62.3 171 500-681 493-678 (1158)
300 2p9w_A MAL S 1 allergenic prot 97.8 0.0042 1.4E-07 62.0 22.5 194 491-685 27-265 (334)
301 2xbg_A YCF48-like protein; pho 97.7 0.048 1.6E-06 55.9 30.6 102 45-152 36-143 (327)
302 3kya_A Putative phosphatase; s 97.7 0.025 8.5E-07 60.6 27.7 163 523-691 249-481 (496)
303 3m0c_C LDL receptor, low-densi 97.6 0.045 1.5E-06 63.0 30.9 152 491-650 485-639 (791)
304 1n7d_A LDL receptor, low-densi 97.5 0.00028 9.6E-09 80.8 11.4 139 15-159 379-527 (699)
305 2p9w_A MAL S 1 allergenic prot 97.5 0.0026 8.8E-08 63.5 16.7 163 521-685 13-215 (334)
306 2xzh_A Clathrin heavy chain 1; 97.5 0.083 2.8E-06 52.1 32.8 178 499-685 126-332 (365)
307 2ism_A Putative oxidoreductase 97.4 0.037 1.3E-06 57.3 23.9 60 613-673 268-333 (352)
308 3sre_A PON1, serum paraoxonase 97.4 0.05 1.7E-06 55.7 24.2 172 497-675 81-287 (355)
309 1n7d_A LDL receptor, low-densi 97.3 0.0011 3.7E-08 75.9 11.9 153 491-652 467-623 (699)
310 3a9g_A Putative uncharacterize 97.2 0.089 3E-06 54.4 24.8 137 3-148 31-215 (354)
311 1bpo_A Protein (clathrin); cla 97.2 0.3 1E-05 50.3 32.3 179 499-686 125-332 (494)
312 2ism_A Putative oxidoreductase 96.9 0.13 4.6E-06 53.0 22.6 202 465-685 31-297 (352)
313 3das_A Putative oxidoreductase 96.7 0.62 2.1E-05 47.3 30.7 103 45-150 32-159 (347)
314 2g8s_A Glucose/sorbosone dehyd 96.7 0.55 1.9E-05 48.4 25.4 69 613-683 271-350 (353)
315 3das_A Putative oxidoreductase 96.7 0.17 5.7E-06 51.6 20.3 151 518-672 29-219 (347)
316 3sre_A PON1, serum paraoxonase 96.6 0.12 4.2E-06 52.8 19.1 160 522-685 51-252 (355)
317 3pbp_A Nucleoporin NUP82; beta 96.6 0.13 4.4E-06 53.0 18.7 105 53-160 29-158 (452)
318 1tl2_A L10, protein (tachylect 96.6 0.11 3.8E-06 48.1 16.3 184 491-686 6-209 (236)
319 1xi4_A Clathrin heavy chain; a 96.5 0.093 3.2E-06 62.5 19.1 207 5-280 70-297 (1630)
320 3a9g_A Putative uncharacterize 96.5 0.98 3.3E-05 46.5 32.2 101 45-150 29-154 (354)
321 3pbp_A Nucleoporin NUP82; beta 96.3 0.22 7.4E-06 51.3 18.3 135 9-147 28-196 (452)
322 2vpj_A Kelch-like protein 12; 96.1 0.21 7.1E-06 50.3 17.9 183 491-685 65-278 (301)
323 2vpj_A Kelch-like protein 12; 96.0 0.66 2.3E-05 46.5 20.9 134 23-162 32-186 (301)
324 2xn4_A Kelch-like protein 2; s 95.9 0.25 8.7E-06 49.7 17.2 183 491-685 64-276 (302)
325 1cru_A Protein (soluble quinop 95.9 0.56 1.9E-05 50.2 20.3 111 520-632 26-163 (454)
326 3ii7_A Kelch-like protein 7; p 95.8 0.29 9.9E-06 49.4 17.2 183 491-685 58-272 (306)
327 1tl2_A L10, protein (tachylect 95.7 0.22 7.6E-06 46.1 13.9 111 39-154 35-157 (236)
328 3ii7_A Kelch-like protein 7; p 95.7 1.2 3.9E-05 44.8 21.4 133 23-161 25-179 (306)
329 2g8s_A Glucose/sorbosone dehyd 95.7 2.3 7.7E-05 43.7 31.8 103 45-150 18-149 (353)
330 2xn4_A Kelch-like protein 2; s 95.4 1.5 5.3E-05 43.8 20.8 133 23-161 31-183 (302)
331 3s25_A Hypothetical 7-bladed b 95.1 0.63 2.2E-05 46.5 16.3 123 8-149 60-202 (302)
332 1zgk_A Kelch-like ECH-associat 95.1 1.5 5E-05 44.1 19.5 133 23-161 40-194 (308)
333 4asc_A Kelch repeat and BTB do 94.8 3.9 0.00013 41.1 24.9 142 15-161 6-175 (315)
334 1zgk_A Kelch-like ECH-associat 94.6 0.53 1.8E-05 47.5 14.6 165 499-675 90-272 (308)
335 4asc_A Kelch repeat and BTB do 94.5 1.7 5.7E-05 43.9 18.2 183 491-686 7-222 (315)
336 2be1_A Serine/threonine-protei 94.4 0.85 2.9E-05 46.1 15.1 149 496-648 64-236 (339)
337 1xi4_A Clathrin heavy chain; a 94.4 2.1 7.2E-05 51.4 20.1 191 491-690 79-294 (1630)
338 3s25_A Hypothetical 7-bladed b 93.9 2.7 9.3E-05 41.9 17.9 160 526-711 58-238 (302)
339 2woz_A Kelch repeat and BTB do 93.8 3.1 0.00011 41.9 18.6 184 491-686 18-232 (318)
340 1cru_A Protein (soluble quinop 93.7 4.3 0.00015 43.2 20.1 109 466-588 28-163 (454)
341 2woz_A Kelch repeat and BTB do 93.6 6.6 0.00023 39.4 23.7 143 15-162 17-186 (318)
342 2uvk_A YJHT; unknown function, 93.6 7.4 0.00025 39.8 21.6 146 499-649 168-348 (357)
343 2be1_A Serine/threonine-protei 93.3 0.23 7.8E-06 50.3 8.7 195 491-690 12-236 (339)
344 3sbq_A Nitrous-oxide reductase 93.2 0.74 2.5E-05 49.0 12.3 120 23-149 299-453 (638)
345 3q6k_A 43.2 kDa salivary prote 92.6 10 0.00035 38.8 24.0 118 19-161 120-254 (381)
346 2uvk_A YJHT; unknown function, 92.6 1.6 5.6E-05 44.9 14.5 53 635-689 286-346 (357)
347 3sbq_A Nitrous-oxide reductase 92.3 2.1 7.2E-05 45.7 14.3 101 569-673 323-453 (638)
348 2zwa_A Leucine carboxyl methyl 92.0 11 0.00038 42.7 21.5 150 491-645 400-579 (695)
349 2wg3_C Hedgehog-interacting pr 90.6 4 0.00014 43.4 15.0 113 521-633 14-159 (463)
350 2zwa_A Leucine carboxyl methyl 89.5 17 0.00059 41.2 20.0 139 23-162 413-579 (695)
351 2wg3_C Hedgehog-interacting pr 88.0 11 0.00039 39.9 16.1 105 45-151 14-159 (463)
352 3no0_A DNA gyrase subunit A; D 84.5 31 0.0011 33.5 23.7 188 491-685 37-246 (276)
353 4a9v_A PHOX; hydrolase, beta-p 81.6 2.5 8.4E-05 45.5 7.0 59 3-64 478-550 (592)
354 3q6k_A 43.2 kDa salivary prote 78.7 61 0.0021 33.1 20.0 133 13-149 169-342 (381)
355 3uc1_A DNA gyrase subunit A; D 77.2 62 0.0021 32.3 21.0 163 520-685 94-279 (327)
356 4gq2_M Nucleoporin NUP120; bet 76.4 16 0.00056 43.0 12.7 38 244-281 238-275 (950)
357 1suu_A DNA gyrase subunit A; t 75.4 67 0.0023 31.8 28.0 122 521-643 100-231 (312)
358 3zwu_A Alkaline phosphatase PH 72.5 6 0.00021 43.3 7.1 58 3-63 478-549 (592)
359 3qhy_B Beta-lactamase inhibito 71.2 79 0.0027 30.7 20.4 170 498-688 80-249 (282)
360 1zi0_A DNA gyrase subunit A; b 70.5 86 0.003 30.9 24.8 165 520-685 94-277 (307)
361 4gq2_M Nucleoporin NUP120; bet 67.1 2E+02 0.0068 33.8 19.0 38 372-410 237-274 (950)
362 3qhy_B Beta-lactamase inhibito 66.2 99 0.0034 30.0 18.5 128 20-159 40-167 (282)
363 3zwu_A Alkaline phosphatase PH 64.6 19 0.00065 39.4 9.0 60 47-106 478-548 (592)
364 4a9v_A PHOX; hydrolase, beta-p 61.9 29 0.001 37.4 9.5 58 90-148 477-548 (592)
365 1suu_A DNA gyrase subunit A; t 61.3 1.3E+02 0.0045 29.7 23.0 190 491-685 10-231 (312)
366 3l6v_A GYRA, DNA gyrase subuni 60.3 1.5E+02 0.0052 30.1 24.9 123 520-643 98-265 (370)
367 4fhn_B Nucleoporin NUP120; pro 60.0 1.1E+02 0.0036 37.0 15.4 39 372-411 239-277 (1139)
368 3uc1_A DNA gyrase subunit A; D 55.8 1.7E+02 0.0057 29.1 20.1 190 491-685 5-228 (327)
369 3no0_A DNA gyrase subunit A; D 55.0 1.5E+02 0.0052 28.5 18.0 157 521-686 24-197 (276)
370 4fhn_B Nucleoporin NUP120; pro 49.2 1.4E+02 0.0048 36.0 13.9 38 614-651 239-276 (1139)
371 1wp5_A Topoisomerase IV; broke 47.9 2.2E+02 0.0074 28.2 24.4 164 521-685 92-277 (323)
372 3f7f_A Nucleoporin NUP120; nuc 45.6 85 0.0029 35.0 10.0 37 46-86 223-259 (729)
373 1zi0_A DNA gyrase subunit A; b 44.1 2.4E+02 0.0082 27.6 21.8 189 491-685 5-226 (307)
374 1wp5_A Topoisomerase IV; broke 43.8 2.5E+02 0.0086 27.8 19.7 192 491-685 7-225 (323)
375 1zvt_A Topoisomerase IV subuni 43.1 2.2E+02 0.0076 27.0 13.1 146 534-686 4-164 (256)
376 3b7f_A Glycosyl hydrolase, BNR 39.4 3.2E+02 0.011 27.7 20.1 194 487-682 20-260 (394)
377 4hvt_A Ritya.17583.B, post-pro 33.7 1.2E+02 0.0042 34.1 9.4 95 21-116 319-429 (711)
378 3f7f_A Nucleoporin NUP120; nuc 32.2 4.7E+02 0.016 29.2 13.2 85 321-411 171-259 (729)
379 3mez_B Mannose-specific lectin 30.4 2.1E+02 0.0072 22.9 10.4 61 580-643 24-84 (113)
380 3mez_A Mannose-specific lectin 29.6 1.6E+02 0.0054 23.5 7.0 24 315-338 53-76 (111)
381 3elq_A Arylsulfate sulfotransf 28.5 5.9E+02 0.02 27.5 14.8 70 14-85 218-300 (571)
382 3l6v_A GYRA, DNA gyrase subuni 26.7 5.1E+02 0.017 26.1 21.2 189 491-685 9-265 (370)
383 4hvt_A Ritya.17583.B, post-pro 25.5 7.4E+02 0.025 27.7 21.1 178 498-684 215-429 (711)
384 3a0c_A Mannose/sialic acid-bin 22.6 2.9E+02 0.0099 21.9 9.6 80 10-104 18-97 (110)
385 1zvt_A Topoisomerase IV subuni 22.0 5E+02 0.017 24.4 15.2 149 491-643 4-163 (256)
386 3mez_B Mannose-specific lectin 21.5 3.1E+02 0.011 21.8 10.3 57 92-159 26-83 (113)
387 3mez_A Mannose-specific lectin 20.5 3.2E+02 0.011 21.7 7.2 54 92-157 22-75 (111)
388 3d8d_A Amyloid beta A4 precurs 20.4 2.1E+02 0.0071 24.3 5.9 41 12-56 54-94 (148)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-62 Score=559.16 Aligned_cols=528 Identities=14% Similarity=0.214 Sum_probs=403.7
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc--ee
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL--AF 80 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~--~~ 80 (882)
+..++|+|||. .+++.+++.|++||+++++....+.+|. ..|++++|||||++||+|+. |++|+|||+.++ ..
T Consensus 21 ~~~~~~spdg~-~l~~~~~~~v~l~~~~~~~~~~~~~~h~--~~v~~~~~spdg~~lasg~~--d~~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 21 AVVLGNTPAGD-KIQYCNGTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSPSGYYCASGDV--HGNVRIWDTTQTTHIL 95 (611)
T ss_dssp CCCCEECTTSS-EEEEEETTEEEEEETTCSSCCEEECCCS--SCEEEEEECTTSSEEEEEET--TSEEEEEESSSTTCCE
T ss_pred eeEEeeCCCCC-EEEeCCCCEEEEecCCCcccCeEecCCC--CceEEEEECCCCcEEEEEeC--CCCEEEeECCCCccee
Confidence 55789999987 8888999999999999999999999999 89999999999999999976 899999999754 34
Q ss_pred eEEeeccccceeEEEECCCCCEEEEEc-C-----EEEEEEcCcceeeeeeecCCcccceeEEEEccCCC-EEEEECC-Cc
Q 047837 81 ISELKGHLYGVECIAFSPDGEHLVTVG-G-----YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAK-FIVTAGK-KH 152 (882)
Q Consensus 81 ~~~l~~h~~~V~~lafspdg~~Las~~-~-----~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~-~l~~~~~-~~ 152 (882)
...+.+|.+.|.+++|+|||++||+++ + .|++|| +++.+..+.+|. ..|.+++|+|++. .|++++. +.
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~--~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQA--RAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCS--SCEEEEEECSSSSCEEEEEETTSC
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCC--CCceEEEECCCCCeEEEEEeCCCe
Confidence 567889999999999999999999887 2 566665 677778888877 8999999999987 5888775 89
Q ss_pred EEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccC
Q 047837 153 LKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSG 232 (882)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~ 232 (882)
|++||...++. ...+.+|...+
T Consensus 172 v~lwd~~~~~~--------~~~l~~H~~~V-------------------------------------------------- 193 (611)
T 1nr0_A 172 VAIFEGPPFKF--------KSTFGEHTKFV-------------------------------------------------- 193 (611)
T ss_dssp EEEEETTTBEE--------EEEECCCSSCE--------------------------------------------------
T ss_pred EEEEECCCCeE--------eeeeccccCce--------------------------------------------------
Confidence 99999876543 12233344433
Q ss_pred ceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCC
Q 047837 233 LSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPN 312 (882)
Q Consensus 233 ~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (882)
.+++|+|++++|++++.|++|++||+.+++....+.... .....+...
T Consensus 194 ------------~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--------------------~~~~~h~~~ 241 (611)
T 1nr0_A 194 ------------HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--------------------LKNVAHSGS 241 (611)
T ss_dssp ------------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--------------------SSSCSSSSC
T ss_pred ------------EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--------------------ccccccCCC
Confidence 899999999999999999999999999887765542100 001135566
Q ss_pred cEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcc---------------------eeeeecc---cCCCC
Q 047837 313 AIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSA---------------------CIWDIKN---LGCEN 367 (882)
Q Consensus 313 ~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------------~v~~i~~---~~~~~ 367 (882)
+.+++|+|+++ +++++.|++|++||+.+++.......-..+.. .+|+... .....
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 78999999997 55677799999999987654332111001111 1111110 11235
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
+|...|.+++|+ +++++|++++.|++|++||+.++.........+. ..+.
T Consensus 322 gh~~~v~~l~~s-pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~-----------------------------~~v~ 371 (611)
T 1nr0_A 322 GHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHA-----------------------------TMIT 371 (611)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS-----------------------------SCEE
T ss_pred CCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeecccCCc-----------------------------ceEE
Confidence 799999999999 8999999999999999999998765443211121 1122
Q ss_pred EEEEcCCCC---------EEEee--------------eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEE
Q 047837 448 SMAVSSRGS---------TLLLD--------------AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLY 504 (882)
Q Consensus 448 ~~~~s~~~~---------~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iw 504 (882)
.+++++++. ..++. ........++|+|++. +++++ .++.+++|
T Consensus 372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~~~~~-~~~~v~~~ 437 (611)
T 1nr0_A 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-------------IAVAA-CYKHIAIY 437 (611)
T ss_dssp EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-------------CEEEE-ESSEEEEE
T ss_pred EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc-------------EEEEE-eCceEEEE
Confidence 233332222 21111 1223456778888876 56555 56789999
Q ss_pred EcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEE
Q 047837 505 DVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVI 584 (882)
Q Consensus 505 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 584 (882)
+ .+ + +..+. |...+.+++|+|||++|++++.|++|++||+........ .. ..|...|.+++|+|++++|+
T Consensus 438 ~--~~-~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~----~~-~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 438 S--HG-K-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV----KT-IVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp E--TT-E-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE----EE-EECSSCEEEEEECTTSSEEE
T ss_pred e--CC-c-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee----ec-cCCCCceEEEEECCCCCEEE
Confidence 8 33 3 44444 888999999999999999999999999999975432111 11 34668999999999999999
Q ss_pred EEeCCCcEEEEEccC-CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-EE-EEEccC-CCCeEEE
Q 047837 585 TVGQDKKINSFSIAA-GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE-MV-AKAMGH-GEVITGV 660 (882)
Q Consensus 585 ~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~-~~-~~~~~h-~~~v~~l 660 (882)
+++.|++|++||+.+ ++++.......|...|.+++|+|||++||+++.|++|+|||+.+++ .+ ..+.+| ...|.++
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v 587 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 587 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEE
Confidence 999999999999998 5554431112489999999999999999999999999999998865 33 567789 8999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCC
Q 047837 661 TFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 661 ~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+|+||++ |++++.|++|++|++.
T Consensus 588 ~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 588 IWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEETTE-EEEEETTSCEEEEECC
T ss_pred EEcCCCE-EEEecCCCCEEEEecc
Confidence 9999998 9999999999999973
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.5e-60 Score=542.64 Aligned_cols=546 Identities=21% Similarity=0.367 Sum_probs=436.5
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
+.++|+|||...+....++.|+|||. +++.++.+.+|. +.|++++|||||++||+++. |++|+|||. +++++..
T Consensus 20 ~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~--~~V~~l~fspdg~~las~~~--d~~i~vWd~-~~~~~~~ 93 (577)
T 2ymu_A 20 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSPDGQTIASASD--DKTVKLWNR-NGQLLQT 93 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECTTSSEEEEEET--TSCEEEEET-TSCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCC--CCEEEEEECCCCCEEEEEeC--CCEEEEEEC-CCCEEEE
Confidence 56899999984444444689999995 678889999999 89999999999999999965 899999995 6788999
Q ss_pred eeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEccc
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGS 160 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~ 160 (882)
+.+|...|.+++|+||+++|++++ +.+++|+..... ......+. ..|..+.|+|+++.++.++. +.+++|+...
T Consensus 94 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~-~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (577)
T 2ymu_A 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNG 170 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE-EEEECCCS--SCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce-eeeccCCC--CceeeeeeecCCccceecccccceeccccce
Confidence 999999999999999999999998 999999976544 44455554 89999999999999988876 6889998654
Q ss_pred CccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeee--E
Q 047837 161 SATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTK--S 238 (882)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~--~ 238 (882)
... .....+...+ ....+.+ ....++.+..++.+.+|+....... .
T Consensus 171 ~~~---------~~~~~~~~~v-------------~~~~~~~----------~~~~l~~~~~d~~v~~w~~~~~~~~~~~ 218 (577)
T 2ymu_A 171 QLL---------QTLTGHSSSV-------------WGVAFSP----------DGQTIASASDDKTVKLWNRNGQLLQTLT 218 (577)
T ss_dssp CEE---------EEEECCSSCE-------------EEEEECT----------TSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred eee---------eeccCCCcce-------------eeeeecC----------CCCEEEEEcCCCEEEEEeCCCcEEEEEe
Confidence 332 1111222222 0111111 1112566777888888876544433 3
Q ss_pred eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 239 VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 239 ~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.+...+.+++|+|++++|++++.|+.|++|+.. ++.+..+ ..+...+.+++|
T Consensus 219 ~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~---------------------------~~~~~~v~~v~~ 270 (577)
T 2ymu_A 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL---------------------------TGHSSSVNGVAF 270 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE---------------------------CCCSSCEEEEEE
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEE---------------------------ecCCCCEEEEEE
Confidence 356678999999999999999999999999964 3333222 234455678999
Q ss_pred cCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEE
Q 047837 319 STSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRL 397 (882)
Q Consensus 319 s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~v 397 (882)
+|+++ +++++.|+.|++||.... ....+.+ |...|.+++|+ ++++.|++++.|++|++
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~~~~----~~~~~~~----------------h~~~v~~~~~~-~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNRNGQ----LLQTLTG----------------HSSSVWGVAFS-PDGQTIASASDDKTVKL 329 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSC----EEEEECC----------------CSSCEEEEEEC-TTSSEEEEEETTSCEEE
T ss_pred cCCCCEEEEEeCCCEEEEEeCCCc----EEEEEec----------------CCCCeEEEEEC-CCCCEEEEEeCCCeEEE
Confidence 99997 555677999999997532 2223444 55566667777 89999999999999999
Q ss_pred EecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCC
Q 047837 398 WDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSK 477 (882)
Q Consensus 398 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~ 477 (882)
||...... ..+.+|...|.+++|+|+++
T Consensus 330 w~~~~~~~----------------------------------------------------~~~~~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 330 WNRNGQHL----------------------------------------------------QTLTGHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp EETTSCEE----------------------------------------------------EEECCCSSCEEEEEECTTSS
T ss_pred EeCCCCee----------------------------------------------------EEEeCCCCCEEEEEECCCCC
Confidence 99864321 12457888899999999988
Q ss_pred CCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcccee
Q 047837 478 KDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 478 ~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
++++|+.|+.|++||.. + +.+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++. ..
T Consensus 358 -------------~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~-~~ 420 (577)
T 2ymu_A 358 -------------TIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL-LQ 420 (577)
T ss_dssp -------------EEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCE-EE
T ss_pred -------------EEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCE-EE
Confidence 99999999999999964 3 6778889999999999999999999999999999999964 222 22
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC 637 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~ 637 (882)
. ...|...|.+++|+|++++|++++.|+.|++||. +++.+..+. +|...|++++|+||+++||+++.|+.|+
T Consensus 421 ~-----~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~--~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 421 T-----LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp E-----EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred E-----ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 2 2345679999999999999999999999999996 577888887 8999999999999999999999999999
Q ss_pred EEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEecccc
Q 047837 638 LYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRMDSVN 717 (882)
Q Consensus 638 iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 717 (882)
+||. +++++..+.+|...|++|+|+||+++|++++.|+.|++||..+........+...+..+.|+|++..++....+.
T Consensus 493 iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 493 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp EEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 9995 788999999999999999999999999999999999999976543333346778899999999998887765443
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-59 Score=538.81 Aligned_cols=558 Identities=22% Similarity=0.343 Sum_probs=428.5
Q ss_pred ceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEE
Q 047837 33 TQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYI 110 (882)
Q Consensus 33 ~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i 110 (882)
++++.|+||. +.|+|++|||||++||+|+. |+.|+|||. +++++++|.+|...|++|+|+|||++||+++ ++|
T Consensus 7 ~e~~~L~GH~--~~V~~~a~spdg~~las~~~--d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i 81 (577)
T 2ymu_A 7 KERNRLEAHS--SSVRGVAFSPDGQTIASASD--DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81 (577)
T ss_dssp CEEEEECCCS--SCEEEEEECTTSSCEEEEET--TSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeEECCCC--CcEEEEEECCCCCEEEEEeC--CCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 3457789999 89999999999999999965 899999995 7899999999999999999999999999998 999
Q ss_pred EEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccccccc
Q 047837 111 YLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKE 189 (882)
Q Consensus 111 ~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (882)
+|||+ +++++..+..|. ..|.+++|+||+++|++++. +.+++|+....... ....+...+.
T Consensus 82 ~vWd~-~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~v~------ 143 (577)
T 2ymu_A 82 KLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---------TLTGHSSSVW------ 143 (577)
T ss_dssp EEEET-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE---------EECCCSSCEE------
T ss_pred EEEEC-CCCEEEEEECCC--CCEEEEEECCCCCEEEEEcCCCceeecccccceee---------eccCCCCcee------
Confidence 99995 678888898887 89999999999999999986 78999997654331 1111222110
Q ss_pred ceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCcee--eeEeeceeeeeEEEecCCCEEEEEecCCeEEe
Q 047837 190 SYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSV--TKSVDLKVKNGFALSASSKLIACACSNGAVHL 267 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~v 267 (882)
...+... ...+......+.+..+...... ....+...+.+++|+|++++|++++.||.|++
T Consensus 144 -------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 206 (577)
T 2ymu_A 144 -------GVAFSPD----------GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206 (577)
T ss_dssp -------EEEECTT----------SSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred -------eeeeecC----------CccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEE
Confidence 0001100 1113333444444444433222 22334566789999999999999999999999
Q ss_pred eecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccce
Q 047837 268 FDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATR 346 (882)
Q Consensus 268 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~ 346 (882)
|+.. ++.+..+. .+...+.+++|+|+++ +++++.|+.|++||.... .
T Consensus 207 w~~~-~~~~~~~~---------------------------~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~----~ 254 (577)
T 2ymu_A 207 WNRN-GQLLQTLT---------------------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----L 254 (577)
T ss_dssp ECTT-SCEEEEEE---------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----E
T ss_pred EeCC-CcEEEEEe---------------------------cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC----E
Confidence 9964 44333322 3445567899999987 566778999999996432 2
Q ss_pred eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcce
Q 047837 347 CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHL 426 (882)
Q Consensus 347 ~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (882)
...+. +|...|.+++|+ ++++.|++++.|+.|++|+.... ..
T Consensus 255 ~~~~~----------------~~~~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~~~~-~~-------------------- 296 (577)
T 2ymu_A 255 LQTLT----------------GHSSSVNGVAFR-PDGQTIASASDDKTVKLWNRNGQ-LL-------------------- 296 (577)
T ss_dssp EEEEC----------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSC-EE--------------------
T ss_pred EEEEe----------------cCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCc-EE--------------------
Confidence 22333 356667777777 89999999999999999996532 11
Q ss_pred EeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEc
Q 047837 427 VSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDV 506 (882)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~ 506 (882)
..+.+|...|.+++|+|+++ ++++++.|+.|++||.
T Consensus 297 -------------------------------~~~~~h~~~v~~~~~~~~~~-------------~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 297 -------------------------------QTLTGHSSSVWGVAFSPDGQ-------------TIASASDDKTVKLWNR 332 (577)
T ss_dssp -------------------------------EEECCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEET
T ss_pred -------------------------------EEEecCCCCeEEEEECCCCC-------------EEEEEeCCCeEEEEeC
Confidence 12457889999999999988 8999999999999998
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE
Q 047837 507 KRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV 586 (882)
Q Consensus 507 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 586 (882)
.. ..+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++.... ...|...|.+++|+|++++|+++
T Consensus 333 ~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~------~~~~~~~v~~~~~s~dg~~l~~~ 403 (577)
T 2ymu_A 333 NG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT------LTGHSSSVRGVAFSPDGQTIASA 403 (577)
T ss_dssp TS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEE------EECCSSCEEEEEECTTSSCEEEE
T ss_pred CC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEE------ecCCCCCeEEEEECCCCCEEEEE
Confidence 64 4566788999999999999999999999999999999964 222222 22455799999999999999999
Q ss_pred eCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCC
Q 047837 587 GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDC 666 (882)
Q Consensus 587 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~ 666 (882)
+.|+.|++||. +++.+..+. +|...|++++|+||+++|++++.|+.|++||. +++.+..+.+|...|++++|+||+
T Consensus 404 ~~d~~v~~~~~-~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 404 SDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp ETTSEEEEECT-TCCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred eCCCEEEEEeC-CCCEEEEec--CCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCC
Confidence 99999999995 578888887 89999999999999999999999999999996 678888999999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEecccccccccCcCcCCCccccceecCCceeeEEE
Q 047837 667 KHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRMDSVNMSFKKDLDQIGPHLHYHGVKPHLTSAFKF 746 (882)
Q Consensus 667 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 746 (882)
++|++++.|+.|++||..+........+...+..+.|+|++..++....+......+ ..++.+. ....+...+..+
T Consensus 480 ~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd--~~~~~~~--~~~~h~~~v~~~ 555 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQ--TLTGHSSSVWGV 555 (577)
T ss_dssp CEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC--TTSCEEE--EEECCSSCEEEE
T ss_pred CEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe--CCCCEEE--EEcCCCCCEEEE
Confidence 999999999999999976544333345677889999999998888776665543323 2333332 222233344455
Q ss_pred ecCCchhhhhccccc
Q 047837 747 SISRLPKWAQKKVTD 761 (882)
Q Consensus 747 ~~~~~~~~~~~~~~~ 761 (882)
.++++++++.+.+.|
T Consensus 556 ~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 556 AFSPDGQTIASASSD 570 (577)
T ss_dssp EECTTSSCEEEEETT
T ss_pred EEcCCCCEEEEEeCC
Confidence 555555554444443
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-58 Score=529.19 Aligned_cols=530 Identities=16% Similarity=0.195 Sum_probs=396.9
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcce--e
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAM--L 120 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~--~ 120 (882)
+.+.+++|||||++||+++ ++.|+|||+.+++.+..+.+|...|++++|||||++||+++ ++|+|||+.+++ +
T Consensus 19 g~~~~~~~spdg~~l~~~~---~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCN---GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 95 (611)
T ss_dssp TCCCCCEECTTSSEEEEEE---TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CceeEEeeCCCCCEEEeCC---CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee
Confidence 7889999999999999986 34899999999999999999999999999999999999999 999999997654 3
Q ss_pred eeeeecCCcccceeEEEEccCCCEEEEECCC-----cEEEEEcccCccceeccccCccceeecCccccccccccceEEEe
Q 047837 121 VMKLKANSSCSAITSACFSSDAKFIVTAGKK-----HLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSV 195 (882)
Q Consensus 121 ~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 195 (882)
...+..|. +.|.+++|+||+++|++++++ .|++||. +.. ...+.+|...+
T Consensus 96 ~~~~~~~~--~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~--------~~~l~gh~~~v------------- 150 (611)
T 1nr0_A 96 KTTIPVFS--GPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTS--------NGNLTGQARAM------------- 150 (611)
T ss_dssp EEEEECSS--SCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCB--------CBCCCCCSSCE-------------
T ss_pred eEeecccC--CceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCC--------cceecCCCCCc-------------
Confidence 45566665 899999999999999988752 5777764 322 12344455444
Q ss_pred eecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCC-EEEEEecCCeEEeeecccce
Q 047837 196 ISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSK-LIACACSNGAVHLFDIQSLK 274 (882)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~dg~I~vwd~~~~~ 274 (882)
.+++|+|++. .|++|+.|++|++||..+++
T Consensus 151 -------------------------------------------------~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 151 -------------------------------------------------NSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp -------------------------------------------------EEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred -------------------------------------------------eEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 8999999987 69999999999999988876
Q ss_pred ecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeE-EEEeCCceEEEEEcccccccceeeeeecC
Q 047837 275 HAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKL-VVVYGDHSLYVWDIHDVNEATRCCVLVSH 353 (882)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 353 (882)
....+. .|...+.+++|+|++++ ++++.|++|++||+.+++... .+...
T Consensus 182 ~~~~l~---------------------------~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~---~~~~~ 231 (611)
T 1nr0_A 182 FKSTFG---------------------------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG---VFEDD 231 (611)
T ss_dssp EEEEEC---------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---ECBCT
T ss_pred Eeeeec---------------------------cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee---eeccc
Confidence 654442 34455679999999975 557779999999987764322 11100
Q ss_pred cceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeee
Q 047837 354 SACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFE 433 (882)
Q Consensus 354 ~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (882)
.....+|...|.+++|+ +++++|++++.|++|++||+.+++.+.....+..... ..... .+.
T Consensus 232 ---------~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~-------~~~~~-~~~ 293 (611)
T 1nr0_A 232 ---------SLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED-------QQLGI-IWT 293 (611)
T ss_dssp ---------TSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG-------CEEEE-EEC
T ss_pred ---------cccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc-------eeEEE-EEc
Confidence 00112588889999998 8999999999999999999998877655432211000 00000 001
Q ss_pred eeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeE
Q 047837 434 RNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLI 513 (882)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~ 513 (882)
...+........++.+..........+.+|...|.+++|+|+++ +|++++.|+.|++||+.++ ...
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-------------~l~s~s~D~~v~~Wd~~~~-~~~ 359 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-------------TLFSADAEGHINSWDISTG-ISN 359 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTTC-CEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-------------EEEEEeCCCcEEEEECCCC-cee
Confidence 11111111222333333222222234568999999999999998 9999999999999999886 444
Q ss_pred EEe-ecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce------e---------e-----------------ec
Q 047837 514 ESI-DDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY------K---------I-----------------SR 560 (882)
Q Consensus 514 ~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~------~---------~-----------------~~ 560 (882)
..+ .+|...|.+++|++++ .+++++.|+.+++|++....... . + ..
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~ 438 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence 444 5799999999999765 68899999999999986532110 0 0 00
Q ss_pred --cceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 047837 561 --RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICL 638 (882)
Q Consensus 561 --~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~i 638 (882)
......+...+.+++|+|||++|++++.|++|++||+.+++...... .+|...|++++|+|||++||+++.|++|++
T Consensus 439 ~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 439 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp TTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 00111234578999999999999999999999999998765432221 378999999999999999999999999999
Q ss_pred EEccC-CeEEEE--EccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC-C-ccc-CC-CCCcccEEEecCCCeEE
Q 047837 639 YDFIS-GEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILP-P-RNF-AQ-PAALSPIIFCEEEDQKC 711 (882)
Q Consensus 639 wd~~~-~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~-~-~~~-~~-~~~~~~~~~s~~~~~~~ 711 (882)
||+.+ ++++.. +.+|...|.+++|+|||++|++++.|++|++||+..+.. . ..+ .+ ...+..+.|++++. ++
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~ 596 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IV 596 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EE
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EE
Confidence 99998 666544 344999999999999999999999999999999987653 2 233 44 57788899998876 55
Q ss_pred Eeccc
Q 047837 712 RMDSV 716 (882)
Q Consensus 712 ~~~~~ 716 (882)
....+
T Consensus 597 s~~~D 601 (611)
T 1nr0_A 597 SAGQD 601 (611)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 54433
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-55 Score=553.39 Aligned_cols=585 Identities=19% Similarity=0.268 Sum_probs=451.3
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEe
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISEL 84 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l 84 (882)
.++|+||++..+....++.|.|||+.+++.+..+.+|. +.|.+++|+|||++||+|+. |+.|+|||+.+++++..+
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~ 695 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSYIATCSA--DKKVKIWDSATGKLVHTY 695 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC--CCEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceEEEE
Confidence 47899998855445557899999999999999999998 89999999999999999965 899999999999999999
Q ss_pred eccccceeEEEECC--CCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcc
Q 047837 85 KGHLYGVECIAFSP--DGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIG 159 (882)
Q Consensus 85 ~~h~~~V~~lafsp--dg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~ 159 (882)
.+|...|.+++|+| ++.+|++++ +.|++||+.+++++..+..|. ..|.+++|+|++++|++++. +.|++||+.
T Consensus 696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT--NSVNHCRFSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS--SCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC--CCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence 99999999999999 556888888 999999999999999999887 89999999999999999876 899999998
Q ss_pred cCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceee---
Q 047837 160 SSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVT--- 236 (882)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~--- 236 (882)
++....... .......+..+. ......+.+..|..++. .+... .++.+..|+......
T Consensus 774 ~~~~~~~~~--~~~~~~~~~~~~------~~~~~~v~~~~~s~dg~----------~l~~~-~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 774 SANERKSIN--VKRFFLSSEDPP------EDVEVIVKCCSWSADGD----------KIIVA-AKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp GTEEEEEEE--CCCCC--------------CCCCCBCCCCBCTTSS----------EEEEE-ETTEEEEEETTTCCEEEE
T ss_pred CCcccceec--ccccccccCCcc------ccccceEEEEEECCCCC----------EEEEE-cCCcEEEEEecCCCceeE
Confidence 876522111 100000000000 00000112222322221 11222 245555665432211
Q ss_pred -eEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEE
Q 047837 237 -KSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIA 315 (882)
Q Consensus 237 -~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (882)
...+...+.+++|+|++.++++++.||.|++|++.+++....+. .+...+.+
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---------------------------~h~~~v~~ 887 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR---------------------------GHLSWVHG 887 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---------------------------CCSSCEEE
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---------------------------CCccceEE
Confidence 12345677899999999999999999999999999887665542 34555679
Q ss_pred EeecCCCe-EEEEeCCceEEEEEcccccccceee-------eeecCcce-----------eeeecccCCCCCCCCCccee
Q 047837 316 CQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCC-------VLVSHSAC-----------IWDIKNLGCENMHDPSVSCV 376 (882)
Q Consensus 316 ~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~-----------v~~i~~~~~~~~h~~~v~~~ 376 (882)
++|+|+++ +++++.|+.|++|++.......... ........ ++..........+...+.++
T Consensus 888 v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 967 (1249)
T 3sfz_A 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC 967 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEE
Confidence 99999996 6667789999999986532111000 00000000 00000001112246779999
Q ss_pred eeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCC
Q 047837 377 ARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGS 456 (882)
Q Consensus 377 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 456 (882)
+|+ ++++++++++.||.|++|++.+++...
T Consensus 968 ~~s-p~g~~l~~g~~~g~i~i~d~~~~~~~~------------------------------------------------- 997 (1249)
T 3sfz_A 968 CLS-PHLEYVAFGDEDGAIKIIELPNNRVFS------------------------------------------------- 997 (1249)
T ss_dssp EEC-TTSSEEEEEETTSCCEEEETTTTSCEE-------------------------------------------------
T ss_pred EEc-CCCCEEEEEcCCCCEEEEEcCCCceee-------------------------------------------------
Confidence 999 899999999999999999998765432
Q ss_pred EEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEE
Q 047837 457 TLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKIL 536 (882)
Q Consensus 457 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 536 (882)
.+.+|...|.+++|+|+++ ++++++.||.|++||+.++ ... .+..|...|.+++|+|++ .++
T Consensus 998 --~~~~h~~~v~~l~~s~dg~-------------~l~s~~~dg~i~vwd~~~~-~~~-~~~~~~~~v~~~~~~~~~-~l~ 1059 (1249)
T 3sfz_A 998 --SGVGHKKAVRHIQFTADGK-------------TLISSSEDSVIQVWNWQTG-DYV-FLQAHQETVKDFRLLQDS-RLL 1059 (1249)
T ss_dssp --ECCCCSSCCCCEEECSSSS-------------CEEEECSSSBEEEEETTTT-EEE-CCBCCSSCEEEEEECSSS-EEE
T ss_pred --ecccCCCceEEEEECCCCC-------------EEEEEcCCCEEEEEECCCC-ceE-EEecCCCcEEEEEEcCCC-cEE
Confidence 2447888999999999988 8999999999999999886 333 456899999999999966 678
Q ss_pred EEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcE
Q 047837 537 SCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPM 616 (882)
Q Consensus 537 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 616 (882)
+++.|+.|++||+.++.....+ ..|.+.|.+++|+|+++++++++.|++|++||+.+++.+..+. +|...|+
T Consensus 1060 ~~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~ 1131 (1249)
T 3sfz_A 1060 SWSFDGTVKVWNVITGRIERDF------TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVR 1131 (1249)
T ss_dssp EEESSSEEEEEETTTTCCCEEE------ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEE
T ss_pred EEECCCcEEEEECCCCceeEEE------cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEE
Confidence 8999999999999877655443 2345789999999999999999999999999999999988887 8999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE---------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 617 KVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA---------MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 617 ~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
+++|+|||++||+++.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++ |.|++||+.++.
T Consensus 1132 ~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~ 1209 (1249)
T 3sfz_A 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGD 1209 (1249)
T ss_dssp EEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCB
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCc
Confidence 9999999999999999999999999999877654 67999999999999999999886 899999999888
Q ss_pred CCcccC-CCCCcccEEEecCCCeEEEecccccc
Q 047837 688 PPRNFA-QPAALSPIIFCEEEDQKCRMDSVNMS 719 (882)
Q Consensus 688 ~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~ 719 (882)
....+. +...+..+.|++++..++........
T Consensus 1210 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v 1242 (1249)
T 3sfz_A 1210 SSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGIL 1242 (1249)
T ss_dssp CCCCCCCSSCCCCCCEECSSSCCEEEECTTCCE
T ss_pred eeeeeeccCCcccEEEECCCCCEEEEecCCcEE
Confidence 777664 55668889999998877776655433
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-54 Score=501.68 Aligned_cols=528 Identities=15% Similarity=0.205 Sum_probs=394.1
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCC----ceEEEEEecCCCCC-eEEEEEcC--CCCEEEEeecCCCCeEEEEEC
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSS----TQSHLMVSHRMPKP-LCCVAMSR--DGRYVAAGESGPQPAVLVWDC 75 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~----~~~~~l~~h~~~~~-I~~va~sp--dg~~la~g~~~~d~~I~vwd~ 75 (882)
+..++|+||+. .+++..++.|.|||++++ +....+.+|. .. |++++|+| |+++||+|+. |+.|+|||+
T Consensus 21 v~~~~~spdg~-~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~~l~s~~~--dg~v~vw~~ 95 (615)
T 1pgu_A 21 TTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDE--SGKVIVWGW 95 (615)
T ss_dssp CCCCEEETTTT-EEEEEETTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEET--TSEEEEEEE
T ss_pred eeEEEECCCCC-EEEEecCCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCCEEEEecC--CCEEEEEeC
Confidence 46799999987 788888999999999999 8888999998 88 99999999 9999999966 899999999
Q ss_pred CCc--------eeeEEeeccccceeEEEECCCCCEEEEEc-C-----EEEEEEcCcceeeeeeecCCcccceeEEEEccC
Q 047837 76 ANL--------AFISELKGHLYGVECIAFSPDGEHLVTVG-G-----YIYLWNWRSAMLVMKLKANSSCSAITSACFSSD 141 (882)
Q Consensus 76 ~t~--------~~~~~l~~h~~~V~~lafspdg~~Las~~-~-----~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d 141 (882)
.++ +.+..+.+|...|.+++|+||+++|++++ . .|++|| +++.+..+..|. ..|.+++|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~--~~v~~~~~~~~ 171 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS--QRINACHLKQS 171 (615)
T ss_dssp EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS--SCEEEEEECSS
T ss_pred CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC--ccEEEEEECCC
Confidence 855 77888999999999999999999999998 3 666666 778888888876 89999999999
Q ss_pred CC-EEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEE
Q 047837 142 AK-FIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYA 219 (882)
Q Consensus 142 ~~-~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (882)
++ +|++++. +.|++||+.+++.. ..+..|...
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~--------~~~~~~~~~-------------------------------------- 205 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFS--------ASDRTHHKQ-------------------------------------- 205 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEE--------EEECSSSCT--------------------------------------
T ss_pred CCcEEEEEeCCCcEEEEeCCCccee--------eeecccCCC--------------------------------------
Confidence 97 6777765 89999998776541 112222220
Q ss_pred EccCceEEEEccCceeeeEeeceeeeeEEEecC-CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchh
Q 047837 220 LTDAGILYIVHSGLSVTKSVDLKVKNGFALSAS-SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAK 298 (882)
Q Consensus 220 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (882)
...+.+++|+|+ +++|++++.||.|++||+.+++.+..+. .
T Consensus 206 ---------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~---------- 247 (615)
T 1pgu_A 206 ---------------------GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-------D---------- 247 (615)
T ss_dssp ---------------------TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-------B----------
T ss_pred ---------------------CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec-------c----------
Confidence 002388999999 9999999999999999999887765541 0
Q ss_pred hhccccccCCCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceee
Q 047837 299 ATELYFKLTPTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVA 377 (882)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~ 377 (882)
....+...+.+++|+ +++ +++++.|+.|++||+.+++... .+..+. ..+...+.++.
T Consensus 248 ------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~------------~~~~~~~~~~~ 305 (615)
T 1pgu_A 248 ------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ---KWTLDK------------QQLGNQQVGVV 305 (615)
T ss_dssp ------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE---EEECCT------------TCGGGCEEEEE
T ss_pred ------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCC------------CcccCceeEEE
Confidence 000344567789999 776 6667779999999998764322 333331 11234555666
Q ss_pred eccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCE
Q 047837 378 RGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGST 457 (882)
Q Consensus 378 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 457 (882)
|. ++.++++++.||.|++||+.+++.+.........+.....+. ++.. +.|+..
T Consensus 306 ~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--l~~~----------------------~~dg~i 359 (615)
T 1pgu_A 306 AT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP--LISG----------------------SYDGRI 359 (615)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT--TEEE----------------------ETTSCE
T ss_pred eC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC--cEEE----------------------CCCCeE
Confidence 64 788999999999999999998666554432222211111111 1111 111111
Q ss_pred EEe------eeccceEEEEEEecCCCC----------------------CccceeccCCceEEEEEcCCCcEEEEEcCCC
Q 047837 458 LLL------DAHDAEILSLSFSLSSKK----------------------DDVLEEVTDSHYFLASGGRDRTIHLYDVKRN 509 (882)
Q Consensus 458 ~~~------~~~~~~v~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~ 509 (882)
.++ ..|...|.+++| +++.. ......+.+++.+++++ .++.+.+|++.++
T Consensus 360 ~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~ 437 (615)
T 1pgu_A 360 MEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTG 437 (615)
T ss_dssp EETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTC
T ss_pred EEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEe-CCCceEEEeccCC
Confidence 111 345555555555 22220 00000000111134333 4445555555444
Q ss_pred ceeEEEeecCCCCEEEEEEccCCCEEEEEeC-CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC
Q 047837 510 FDLIESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ 588 (882)
Q Consensus 510 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 588 (882)
+.+..+. |...+.+++|+ +++|++++. |+.|++||+....... .....|...|.+++|+|++++|++++.
T Consensus 438 -~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 438 -DIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF-----DLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp -CEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE-----ECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred -ceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc-----cccCCccCceEEEEECCCCCEEEEcCC
Confidence 4444444 88899999998 889999999 9999999998643221 223345689999999999999999999
Q ss_pred CCcEEEEEccCCceEEEEEecc-CCCCcEEEEECC----------CCCEEEEEeCCCcEEEEEccCC-eEEEEEccCCCC
Q 047837 589 DKKINSFSIAAGKLIRSFKQAK-DFGDPMKVTVDP----------SGSYLVCSYSNKSICLYDFISG-EMVAKAMGHGEV 656 (882)
Q Consensus 589 d~~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~sp----------dg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~ 656 (882)
|+.|++||+.+++.+..+. + |...|++++|+| ++++||+++.||.|++||+.++ +++..+.+|...
T Consensus 509 dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~ 586 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 586 (615)
T ss_dssp TSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred CCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc
Confidence 9999999999999988876 5 899999999999 9999999999999999999998 888999999999
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 657 ITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 657 v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
|++++|+||++ |++++.||.|++|++..
T Consensus 587 v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 587 VNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred eEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999999 99999999999999864
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.3e-54 Score=539.85 Aligned_cols=548 Identities=15% Similarity=0.235 Sum_probs=427.8
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEE
Q 047837 34 QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIY 111 (882)
Q Consensus 34 ~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~ 111 (882)
....+.+|. +.|++++|||||++||+|+. |++|+|||+.+++.+..+.+|...|.+++|+|||++||+++ ++|+
T Consensus 607 ~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 607 SRLVVRPHT--DAVYHACFSQDGQRIASCGA--DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CSEEECCCS--SCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEeccc--ccEEEEEECCCCCEEEEEeC--CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 335677898 89999999999999999965 89999999999999999999999999999999999999998 9999
Q ss_pred EEEcCcceeeeeeecCCcccceeEEEEcc--CCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccc
Q 047837 112 LWNWRSAMLVMKLKANSSCSAITSACFSS--DAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQK 188 (882)
Q Consensus 112 iWd~~~g~~~~~~~~~~~~~~v~~l~fs~--d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 188 (882)
|||+.+++++..+..|. ..|.+++|+| ++.++++++. +.|++||+.++.. ...+..|..+
T Consensus 683 vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--------~~~~~~h~~~------- 745 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHS--EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--------RNTMFGHTNS------- 745 (1249)
T ss_dssp EEETTTCCEEEEEECCS--SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--------EEEECCCSSC-------
T ss_pred EEECCCCceEEEEcCCC--CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch--------hheecCCCCC-------
Confidence 99999999999999887 8999999999 5557888775 8999999987765 1122233333
Q ss_pred cceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEee
Q 047837 189 ESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLF 268 (882)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vw 268 (882)
+.+++|+|++++|++++.||.|++|
T Consensus 746 -------------------------------------------------------v~~~~~sp~~~~l~s~s~dg~v~vw 770 (1249)
T 3sfz_A 746 -------------------------------------------------------VNHCRFSPDDELLASCSADGTLRLW 770 (1249)
T ss_dssp -------------------------------------------------------EEEEEECSSTTEEEEEESSSEEEEE
T ss_pred -------------------------------------------------------EEEEEEecCCCEEEEEECCCeEEEE
Confidence 3889999999999999999999999
Q ss_pred ecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceee
Q 047837 269 DIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCC 348 (882)
Q Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~ 348 (882)
|+.+++....+........ +. .........+.+++|+|+|+.++++.++.+.+||+.++.....
T Consensus 771 d~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-- 834 (1249)
T 3sfz_A 771 DVRSANERKSINVKRFFLS--SE------------DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-- 834 (1249)
T ss_dssp EGGGTEEEEEEECCCCC----------------------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE--
T ss_pred eCCCCcccceecccccccc--cC------------CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE--
Confidence 9998877665542211000 00 0011123346688999999988888899999999987643221
Q ss_pred eeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCcc-ceeeecCCcceE
Q 047837 349 VLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHES-LNIEPMSTAHLV 427 (882)
Q Consensus 349 ~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 427 (882)
+ ..+|...|.+++|+ +++.++++++.||.|++||+.++............ ..+...+....+
T Consensus 835 -~---------------~~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 835 -I---------------HTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp -E---------------ECSSSSCCCEEEEC-SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -E---------------cCCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEE
Confidence 1 12467788888888 89999999999999999999988766554322221 112222222222
Q ss_pred eeeeeee----ee---------------eeeeccccCeEEEEEcCCCCEEEe--------eeccceEEEEEEecCCCCCc
Q 047837 428 SAGIFER----NT---------------METSVSTQGYRSMAVSSRGSTLLL--------DAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 428 ~~~~~~~----~~---------------~~~~~~~~~~~~~~~s~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~ 480 (882)
..+..+. +. ............+........... ..+...+.+++|+|++.
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~--- 974 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE--- 974 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS---
T ss_pred EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC---
Confidence 2111110 00 000011111111222222222111 12345688889999888
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeec
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISR 560 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 560 (882)
++++|+.+|.|++||+.++ .....+.+|...|.+++|+|++++|++++.||.|++||+.++....
T Consensus 975 ----------~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---- 1039 (1249)
T 3sfz_A 975 ----------YVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---- 1039 (1249)
T ss_dssp ----------EEEEEETTSCCEEEETTTT-SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC----
T ss_pred ----------EEEEEcCCCCEEEEEcCCC-ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE----
Confidence 9999999999999999887 6778888999999999999999999999999999999998654331
Q ss_pred cceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 561 RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 561 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
...|...+.+++|+|++ .+++++.|+.|++||+.+++.+..+. +|...|++++|+|++++|++++.||.|++||
T Consensus 1040 ---~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1040 ---LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp ---CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEE--CCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred ---EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEc--ccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 22455799999999965 57888999999999999999999998 8999999999999999999999999999999
Q ss_pred ccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc----------CCCCCcccEEEecCCCeE
Q 047837 641 FISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF----------AQPAALSPIIFCEEEDQK 710 (882)
Q Consensus 641 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~s~~~~~~ 710 (882)
+.+++++..+.+|.+.|++++|+|||++|++++.||.|++||+.++.....+ .+...+..+.|++++..+
T Consensus 1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 1193 (1249)
T 3sfz_A 1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL 1193 (1249)
T ss_dssp SSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCE
T ss_pred CCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEE
Confidence 9999999999999999999999999999999999999999999987766554 456778899999999988
Q ss_pred EEec
Q 047837 711 CRMD 714 (882)
Q Consensus 711 ~~~~ 714 (882)
+...
T Consensus 1194 ~s~~ 1197 (1249)
T 3sfz_A 1194 VSAG 1197 (1249)
T ss_dssp EEES
T ss_pred EECC
Confidence 8775
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-53 Score=502.25 Aligned_cols=591 Identities=12% Similarity=0.050 Sum_probs=416.9
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
..++|+||+...++...++.|+|||..+.+....+ .|. ..|.+++|+| |++||+++. |++|+|||+.+++++..
T Consensus 21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~--~~V~~l~fsp-g~~L~S~s~--D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDR--SAIKEMRFVK-GIYLVVINA--KDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSC--CCEEEEEEET-TTEEEEEET--TCEEEEEETTTCSEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCC--CCEEEEEEcC-CCEEEEEEC--cCeEEEEECCCCcEEEE
Confidence 46899999874444445789999999887765553 455 7899999999 889999965 89999999999999999
Q ss_pred eeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceee-----------eeeecCCcccceeEEEEccC-CCEEEEEC
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLV-----------MKLKANSSCSAITSACFSSD-AKFIVTAG 149 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~-----------~~~~~~~~~~~v~~l~fs~d-~~~l~~~~ 149 (882)
+. |...|++++|+|++++|++++ |+|++||+.++++. ..+..| .+.|.+++|+|+ +..|++++
T Consensus 95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h--~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR--LSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC--CCCCCEEEEETTEEEEEEEEC
T ss_pred Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC--CCCeEEEEEccCCCCEEEEEe
Confidence 87 778999999999999999998 99999999998764 122334 489999999996 46777776
Q ss_pred C-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEE
Q 047837 150 K-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYI 228 (882)
Q Consensus 150 ~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~ 228 (882)
. +.| +||+.+++.. +. +..|..+-...... .
T Consensus 172 ~dg~v-lWd~~~~~~~--~~------~~~~~~~g~~~~~~----------------------------------~----- 203 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIK--QS------FIYELPPFAPGGDF----------------------------------S----- 203 (902)
T ss_dssp SSCEE-EEETTTTEEE--EE------ECCCBCTTCCCSTT----------------------------------C-----
T ss_pred CCCcE-EEECCCCceE--EE------EecccCCcCCCccc----------------------------------c-----
Confidence 5 789 9999877652 11 11110000000000 0
Q ss_pred EccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceeccc--cc---ccCcc-c-CC---CCCccccchh
Q 047837 229 VHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGT--LH---YSEAK-K-CN---GENDTVSTAK 298 (882)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~--~~---~~~~~-~-~~---~~~~~~~~~~ 298 (882)
......+...+.+++|+|+|++|++++.||.|++||+.+++.+.. +. ...+. . .. .+...+..+.
T Consensus 204 -----~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~ 278 (902)
T 2oaj_A 204 -----EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVY 278 (902)
T ss_dssp -----CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEE
T ss_pred -----cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEE
Confidence 000001123358999999999999999999999999998876542 10 00000 0 00 0111111110
Q ss_pred hh--------------------------cc-------------------------cccc-CCCCCCcEEEeecC------
Q 047837 299 AT--------------------------EL-------------------------YFKL-TPTIPNAIACQFST------ 320 (882)
Q Consensus 299 ~~--------------------------~~-------------------------~~~~-~~~~~~~~~~~~s~------ 320 (882)
+. .. ...+ ..+...+..+.+.+
T Consensus 279 w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~ 358 (902)
T 2oaj_A 279 WMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYF 358 (902)
T ss_dssp EEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHH
T ss_pred EEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCc
Confidence 00 00 0000 01234555666544
Q ss_pred ----CC-eEEEEeCCceEEEEEcccccccce----eeeeecCcceeeeeccc------------------CCCCCCCCCc
Q 047837 321 ----SE-KLVVVYGDHSLYVWDIHDVNEATR----CCVLVSHSACIWDIKNL------------------GCENMHDPSV 373 (882)
Q Consensus 321 ----~~-~ll~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~v~~i~~~------------------~~~~~h~~~v 373 (882)
+. .+++++.|+.|++|++.++..... ...+..|...|..+.+. ..+.+|...+
T Consensus 359 ~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v 438 (902)
T 2oaj_A 359 AGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTK 438 (902)
T ss_dssp HHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCC
T ss_pred CCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCC
Confidence 12 467778899999999865532111 11234455556555441 1346788888
Q ss_pred ceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcC
Q 047837 374 SCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSS 453 (882)
Q Consensus 374 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 453 (882)
..++|+ +++++|++|+.|++|++||+.++..... . ...+.+..
T Consensus 439 ~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~-----~-------------------------------~~~~~l~~ 481 (902)
T 2oaj_A 439 RQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDN-----A-------------------------------SFEVNLSR 481 (902)
T ss_dssp CCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTT-----B-------------------------------CEEEEHHH
T ss_pred Cccccc-ccCcEEEEecCCCcEEEEECCCccccCC-----c-------------------------------eEEeechh
Confidence 889999 7999999999999999999987632100 0 00000000
Q ss_pred CCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-----------------------
Q 047837 454 RGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF----------------------- 510 (882)
Q Consensus 454 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~----------------------- 510 (882)
.+-.+|...|.+++|+|+++ +||+|+.||+|+|||+.++.
T Consensus 482 ----~~~~~h~~~V~svafspdg~-------------~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 482 ----TLNKAKELAVDKISFAAETL-------------ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp ----HTTCSSSCCEEEEEEETTTT-------------EEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred ----hcCCCCCCceeEEEecCCCC-------------eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 00126889999999999998 99999999999999997641
Q ss_pred ---------------------eeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceec-ccC
Q 047837 511 ---------------------DLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL-ASQ 568 (882)
Q Consensus 511 ---------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~ 568 (882)
+++..+.+|...|++++|+||| +||+++.|++|++||+++........ ..... +|.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~-~~~~~~gh~ 622 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMEN-IREISGAQS 622 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEE-GGGTCSSCC
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEee-hhHhccccc
Confidence 3467788999999999999999 99999999999999987554332211 11222 577
Q ss_pred CceEEEEEe-----cCC---CEEEEEeCCCcEEEEEc---cCCceEEEEEecc---CCCCcEEEE-EC------------
Q 047837 569 GTVYDMDID-----PTM---EVVITVGQDKKINSFSI---AAGKLIRSFKQAK---DFGDPMKVT-VD------------ 621 (882)
Q Consensus 569 ~~v~~~~~s-----p~~---~~l~~~~~d~~v~iwd~---~~~~~~~~~~~~~---~~~~v~~~~-~s------------ 621 (882)
..|++++|+ ||| ++|++++.|++|++||+ .+|+....+..+. |.+.|..++ |+
T Consensus 623 ~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~ 702 (902)
T 2oaj_A 623 ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIP 702 (902)
T ss_dssp CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHH
T ss_pred cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHH
Confidence 899999999 886 89999999999999999 8888888887332 357788777 66
Q ss_pred ----------CCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEE---E------ECCCCCEEEEEeCCCeEEEEe
Q 047837 622 ----------PSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGV---T------FLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 622 ----------pdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l---~------~s~d~~~l~s~~~dg~i~vwd 682 (882)
+++.+|+++ +..|+||++.++++.+....|...+.++ . |++++..|++.+.||.|++|+
T Consensus 703 ~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 703 KMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp HHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEE
T ss_pred HHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEE
Confidence 566566655 7789999999999998887787777776 5 788999999999999999999
Q ss_pred CCCCCCCcccCCCCCc-----ccEEEecCCCeEEEec
Q 047837 683 KYGILPPRNFAQPAAL-----SPIIFCEEEDQKCRMD 714 (882)
Q Consensus 683 ~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~ 714 (882)
+.+.+.+..+..+... ....|+..++......
T Consensus 781 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 817 (902)
T 2oaj_A 781 IPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVS 817 (902)
T ss_dssp TTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECS
T ss_pred CcchHHHhhccCCcccccccccceEEcCCCCEEEEeC
Confidence 9999988777655443 2456777776555444
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-50 Score=468.49 Aligned_cols=520 Identities=15% Similarity=0.179 Sum_probs=395.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc----eeeEEeeccccc-eeEEEECC--CCCEEEEEc--CEE
Q 047837 40 SHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL----AFISELKGHLYG-VECIAFSP--DGEHLVTVG--GYI 110 (882)
Q Consensus 40 ~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~----~~~~~l~~h~~~-V~~lafsp--dg~~Las~~--~~i 110 (882)
.|. +.|.+++|||||++||+++ ++.|+|||+.++ +.+..+.+|... |.+++|+| |+++||+++ +.|
T Consensus 16 ~~~--~~v~~~~~spdg~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 16 TQR--NFTTHLSYDPTTNAIAYPC---GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp CCT--TCCCCCEEETTTTEEEEEE---TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred Ccc--CceeEEEECCCCCEEEEec---CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 355 8899999999999999996 568999999999 899999999999 99999999 999999998 999
Q ss_pred EEEEcCcc--------eeeeeeecCCcccceeEEEEccCCCEEEEECCC-----cEEEEEcccCccceeccccCccceee
Q 047837 111 YLWNWRSA--------MLVMKLKANSSCSAITSACFSSDAKFIVTAGKK-----HLKFWTIGSSATARTRLNKGTESLTL 177 (882)
Q Consensus 111 ~iWd~~~g--------~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~ 177 (882)
+|||+.++ +.+..+..|. ..|.+++|+|++++|++++.+ .|.+|| .+.. ...+..
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~--------~~~~~~ 158 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLA--GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS--------LGEVSG 158 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE--------EEECCS
T ss_pred EEEeCCCCcccccccccccchhhccc--ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCc--------ceeeec
Confidence 99999865 6677777766 899999999999999998753 677777 3322 111222
Q ss_pred cCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCC-EE
Q 047837 178 HAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSK-LI 256 (882)
Q Consensus 178 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l 256 (882)
|... +.+++|+|+++ +|
T Consensus 159 ~~~~--------------------------------------------------------------v~~~~~~~~~~~~l 176 (615)
T 1pgu_A 159 HSQR--------------------------------------------------------------INACHLKQSRPMRS 176 (615)
T ss_dssp CSSC--------------------------------------------------------------EEEEEECSSSSCEE
T ss_pred CCcc--------------------------------------------------------------EEEEEECCCCCcEE
Confidence 3332 38899999998 89
Q ss_pred EEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCC---CcEEEeecCC-Ce-EEEEeCCc
Q 047837 257 ACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIP---NAIACQFSTS-EK-LVVVYGDH 331 (882)
Q Consensus 257 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~-~~-ll~~~~d~ 331 (882)
++++.||.|++||+.+++.+..+. .+.. .+.+++|+|+ ++ +++++.|+
T Consensus 177 ~~~~~d~~v~vwd~~~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 177 MTVGDDGSVVFYQGPPFKFSASDR---------------------------THHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp EEEETTTEEEEEETTTBEEEEEEC---------------------------SSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred EEEeCCCcEEEEeCCCcceeeeec---------------------------ccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 999999999999999887765543 2233 5779999999 87 55577799
Q ss_pred eEEEEEcccccccceeeee-ecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecc
Q 047837 332 SLYVWDIHDVNEATRCCVL-VSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDV 410 (882)
Q Consensus 332 ~i~iwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 410 (882)
.|++||+.+++... .+ . ....|...|.+++|+ ++.+|++++.||.|++||+.+++.+....
T Consensus 230 ~i~vwd~~~~~~~~---~~~~-------------~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 230 KISCFDGKSGEFLK---YIED-------------DQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp CEEEEETTTCCEEE---ECCB-------------TTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCCEeE---Eecc-------------cccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 99999998764322 12 1 001467777888887 88999999999999999999887766544
Q ss_pred cCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCce
Q 047837 411 LGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHY 490 (882)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 490 (882)
....... .............+......+.+..+..........+.+|...|.+++| |+
T Consensus 292 ~~~~~~~------~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--------------- 349 (615)
T 1pgu_A 292 LDKQQLG------NQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--------------- 349 (615)
T ss_dssp CCTTCGG------GCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---------------
T ss_pred CCCCccc------CceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---------------
Confidence 3311000 0000110101122222223334444443333333456678888999888 64
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc---------------
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA--------------- 555 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--------------- 555 (882)
+++++.||.|++|++. .+. ..|...|.+++| +++..|++++.|+.|++||+.+....
T Consensus 350 -l~~~~~dg~i~~w~~~----~~~--~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 350 -LISGSYDGRIMEWSSS----SMH--QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp -TEEEETTSCEEETTTT----EEE--CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred -cEEECCCCeEEEEEch----hhc--CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 6888899999999987 233 779999999999 66788999999999999998743210
Q ss_pred -------eeee-----ccceecccCCceEEEEEecCCCEEEEEeC-CCcEEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 556 -------YKIS-----RRHQQLASQGTVYDMDIDPTMEVVITVGQ-DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 556 -------~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
..+. .......+...+.+++|+ +++|++++. |+.|++||+.+++... .....|...|++++|+|
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~ 498 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISP 498 (615)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECT
T ss_pred EEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECC
Confidence 0000 001112345789999999 889999999 9999999999887653 22237899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEEcc-CCCCeEEEEECC----------CCCEEEEEeCCCeEEEEeCCCC-CCCc
Q 047837 623 SGSYLVCSYSNKSICLYDFISGEMVAKAMG-HGEVITGVTFLP----------DCKHIVSVGGDGLQRVKEKYGI-LPPR 690 (882)
Q Consensus 623 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~----------d~~~l~s~~~dg~i~vwd~~~~-~~~~ 690 (882)
++++|++++.||.|++||+.+++.+..+.+ |...|++++|+| ++++|++++.||.|++||+.+. ....
T Consensus 499 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 499 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 999999999999999999999999999988 999999999999 9999999999999999999987 4554
Q ss_pred cc-CCCCCcccEEEecCCCeEEEecccc
Q 047837 691 NF-AQPAALSPIIFCEEEDQKCRMDSVN 717 (882)
Q Consensus 691 ~~-~~~~~~~~~~~s~~~~~~~~~~~~~ 717 (882)
.+ .+...+..+.|++++. ++....+.
T Consensus 579 ~~~~h~~~v~~l~~s~~~~-l~s~~~d~ 605 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETPST-LVSSGADA 605 (615)
T ss_dssp ETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred hhhcCccceEEEEEcCCCC-eEEecCCc
Confidence 44 4677889999999987 66655443
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-51 Score=483.50 Aligned_cols=552 Identities=11% Similarity=0.075 Sum_probs=363.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcC
Q 047837 39 VSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWR 116 (882)
Q Consensus 39 ~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~ 116 (882)
.+|. ..|+|++|+||+++||+|+. |++|+|||..+++.+..+. |...|.+|+|+| |++|++++ ++|+|||+.
T Consensus 14 ~gh~--~~V~~lafspdg~~lAsgs~--Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 14 YGMS--SKPIAAAFDFTQNLLAIATV--TGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EECS--SCEEEEEEETTTTEEEEEET--TSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred cCCC--CCcEEEEECCCCCEEEEEeC--CCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 4787 89999999999999999976 8999999999888776654 888999999999 88999998 999999999
Q ss_pred cceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCc---cceeecCccccccccccceE
Q 047837 117 SAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGT---ESLTLHAKPVNLGIQKESYF 192 (882)
Q Consensus 117 ~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~ 192 (882)
+++++..+. +. ..|++++|+|++++|++++. +.|++||+.++.....+..... ..+..|.
T Consensus 88 ~~~~~~~~~-~~--~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~------------- 151 (902)
T 2oaj_A 88 SQKVLTTVF-VP--GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL------------- 151 (902)
T ss_dssp TCSEEEEEE-CS--SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC-------------
T ss_pred CCcEEEEEc-CC--CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC-------------
Confidence 999998886 33 78999999999999999875 8999999987654110000000 0111222
Q ss_pred EEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecC-CCEEEEEecCCeEEeeecc
Q 047837 193 VSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSAS-SKLIACACSNGAVHLFDIQ 271 (882)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~dg~I~vwd~~ 271 (882)
..+.+++|+|+ +..|++|+.||.| +||+.
T Consensus 152 -------------------------------------------------~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 152 -------------------------------------------------SPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp -------------------------------------------------CCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred -------------------------------------------------CCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 23489999996 5789999999999 99999
Q ss_pred cceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeee
Q 047837 272 SLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVL 350 (882)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~ 350 (882)
+++.+..+.........+.... ......+...+.+++|+|+|+ +++++.|+.|++||+.+++.... ..+
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~---------~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~-r~l 251 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFS---------EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA-RTV 251 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTC---------CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE-ECS
T ss_pred CCceEEEEecccCCcCCCcccc---------cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE-Eee
Confidence 9887766542210000000000 001122345688999999997 55677799999999987653221 011
Q ss_pred ---ecCcceeeeecccCCCCCCCCCcceeeecc---CC-CcEEEEeeCC-----CcEEEEecCC----------------
Q 047837 351 ---VSHSACIWDIKNLGCENMHDPSVSCVARGC---TG-GVSFSTCSAD-----GTIRLWDLAL---------------- 402 (882)
Q Consensus 351 ---~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~---~~-~~~l~t~~~d-----g~i~vwd~~~---------------- 402 (882)
.+|... .... .....|...|.+++|++ ++ +.+|++|+.| ..+++|++..
T Consensus 252 ~~~~~~~~~-~~~~--~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~ 328 (902)
T 2oaj_A 252 FETEINVPQ-PDYI--RDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYY 328 (902)
T ss_dssp SCSCTTSCC-TTCC--CCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHH
T ss_pred cccccCCCC-CcCC--CCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhh
Confidence 122110 0000 00002344566777742 22 2455666554 2566666310
Q ss_pred -------------Cceeeecc-cC---------Ccc---ceeeecCCcceEee--eeeeee----eeeeeccccCeEEEE
Q 047837 403 -------------QSELSKDV-LG---------HES---LNIEPMSTAHLVSA--GIFERN----TMETSVSTQGYRSMA 450 (882)
Q Consensus 403 -------------~~~~~~~~-~~---------~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~ 450 (882)
...+.... .. ... +.....+...++.. +..... ..........+..++
T Consensus 329 ~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~ 408 (902)
T 2oaj_A 329 ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSM 408 (902)
T ss_dssp HSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEE
T ss_pred cCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEE
Confidence 00010110 00 000 00000011111110 000000 000111123344444
Q ss_pred EcCC-------------CCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce----eE
Q 047837 451 VSSR-------------GSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD----LI 513 (882)
Q Consensus 451 ~s~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~----~~ 513 (882)
+++. .....+.+|...+..++|+|+++ +|++|+.|++|++||+.++.. ..
T Consensus 409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-------------~laSgs~DgtVrlWd~~~g~~~~~~~~ 475 (902)
T 2oaj_A 409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-------------AFITGHSNGSVRIYDASHGDIQDNASF 475 (902)
T ss_dssp EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-------------EEEEEETTSEEEEEESSCCTTTTTBCE
T ss_pred EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-------------EEEEecCCCcEEEEECCCccccCCceE
Confidence 4321 11113445666666666666665 999999999999999987521 01
Q ss_pred E-Eee-----cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce-------------------------------
Q 047837 514 E-SID-----DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY------------------------------- 556 (882)
Q Consensus 514 ~-~~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~------------------------------- 556 (882)
. .+. +|...|.+++|+||+++||+++.||+|++||+.+++...
T Consensus 476 ~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (902)
T 2oaj_A 476 EVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRD 555 (902)
T ss_dssp EEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGG
T ss_pred EeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccc
Confidence 1 111 789999999999999999999999999999998652100
Q ss_pred --------eeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe----ccCCCCcEEEEEC---
Q 047837 557 --------KISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ----AKDFGDPMKVTVD--- 621 (882)
Q Consensus 557 --------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s--- 621 (882)
.+........|.+.|++++|+||| +||+|+.|++|++||++++..+..... .+|...|++++|+
T Consensus 556 ~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~ 634 (902)
T 2oaj_A 556 RAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIME 634 (902)
T ss_dssp GCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEE
T ss_pred cCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEe
Confidence 000112223477899999999999 999999999999999988777653221 1788899999999
Q ss_pred --CCC---CEEEEEeCCCcEEEEEc---cCCeEEEEEccCC-----CCeEEEE-EC----------------------CC
Q 047837 622 --PSG---SYLVCSYSNKSICLYDF---ISGEMVAKAMGHG-----EVITGVT-FL----------------------PD 665 (882)
Q Consensus 622 --pdg---~~l~~~~~dg~i~iwd~---~~~~~~~~~~~h~-----~~v~~l~-~s----------------------~d 665 (882)
||| ++|++|+.|++|++||+ .+|+.+..+.+|. ++|..++ |+ ++
T Consensus 635 ~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 714 (902)
T 2oaj_A 635 YGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP 714 (902)
T ss_dssp CTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC
T ss_pred cCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC
Confidence 885 89999999999999999 8899888887774 7788887 76 45
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcc
Q 047837 666 CKHIVSVGGDGLQRVKEKYGILPPRN 691 (882)
Q Consensus 666 ~~~l~s~~~dg~i~vwd~~~~~~~~~ 691 (882)
+..|+++ +..||||++.+.+....
T Consensus 715 ~~~l~~~--~~~ir~~~~~~~k~~~k 738 (902)
T 2oaj_A 715 GIVLITG--FDDIRLITLGKSKSTHK 738 (902)
T ss_dssp EEEEEEC--SSEEEEECTTCCCEEEE
T ss_pred eEEEEEe--ccceEEEeCccccceee
Confidence 5444433 78999999988766643
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-44 Score=432.05 Aligned_cols=470 Identities=13% Similarity=0.173 Sum_probs=355.4
Q ss_pred ceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEE
Q 047837 33 TQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYI 110 (882)
Q Consensus 33 ~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i 110 (882)
+..+.+.+|. +.|.+++|||||++||+|+. +|.|+|||+.+++.+..+.+|...|.+++|+||+++|++++ +.|
T Consensus 4 ~~~~~~~~h~--~~v~~i~~sp~~~~la~~~~--~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 4 DIKKTFSNRS--DRVKGIDFHPTEPWVLTTLY--SGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp CCEEEEEEEC--SCEEEEEECSSSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred ccceeeecCC--CceEEEEECCCCCEEEEEeC--CCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 3457788999 89999999999999999965 88999999999999999999999999999999999999998 999
Q ss_pred EEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccccccc
Q 047837 111 YLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKE 189 (882)
Q Consensus 111 ~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (882)
+|||+.+++.+..+..|. ..|.+++|+|++++|++++. +.|++|++.++... ...+..|..+
T Consensus 80 ~vw~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-------~~~~~~~~~~-------- 142 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------EQTFEGHEHF-------- 142 (814)
T ss_dssp EEEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-------EEEEECCSSC--------
T ss_pred EEEECCCCcEEEEEecCC--CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-------EEEEcCCCCc--------
Confidence 999999999999998887 89999999999999999876 89999999765320 1112222222
Q ss_pred ceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec-CCCEEEEEecCCeEEee
Q 047837 190 SYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA-SSKLIACACSNGAVHLF 268 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~dg~I~vw 268 (882)
+.+++|+| ++..|++++.||.|++|
T Consensus 143 ------------------------------------------------------v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 143 ------------------------------------------------------VMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp ------------------------------------------------------EEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ------------------------------------------------------EEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 38899999 89999999999999999
Q ss_pred ecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC--CCe-EEEEeCCceEEEEEcccccccc
Q 047837 269 DIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST--SEK-LVVVYGDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~-ll~~~~d~~i~iwd~~~~~~~~ 345 (882)
|+.+++....+. ..+...+.+++|+| ++. +++++.|+.|++||+.+++.
T Consensus 169 d~~~~~~~~~~~--------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-- 220 (814)
T 3mkq_A 169 SLGQSTPNFTLT--------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-- 220 (814)
T ss_dssp ETTCSSCSEEEE--------------------------CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE--
T ss_pred ECCCCcceeEEe--------------------------cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--
Confidence 998765544332 11224456889998 776 55566699999999977543
Q ss_pred eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcc
Q 047837 346 RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH 425 (882)
Q Consensus 346 ~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (882)
...+.+ |...|.+++|+ +++.+|++++.||.|++||+.+++......
T Consensus 221 -~~~~~~----------------~~~~v~~~~~~-~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------------- 267 (814)
T 3mkq_A 221 -VATLEG----------------HMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKTLN--------------- 267 (814)
T ss_dssp -EEEEEC----------------CSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCSEEEEEC---------------
T ss_pred -EEEEcC----------------CCCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEee---------------
Confidence 223333 55667777887 899999999999999999999876654322
Q ss_pred eEeeeeeeeeeeeeeccccCeEEEEEcCCCCEE-EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCc---E
Q 047837 426 LVSAGIFERNTMETSVSTQGYRSMAVSSRGSTL-LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRT---I 501 (882)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~---v 501 (882)
.....+..++++|++..+ +..+..+.+..+..... .....+.+++..+++++.+.. +
T Consensus 268 ---------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~ 328 (814)
T 3mkq_A 268 ---------------VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND----EPTLSLDPVGKLVWSGGKNAAASDI 328 (814)
T ss_dssp ---------------CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC----SCCEEECSSSEEEEECCTTSCTTCE
T ss_pred ---------------cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC----CceeEECCCCCEEEECcccccceee
Confidence 122346677777776532 33344444433322111 112223334446776655432 1
Q ss_pred EE------EEcCCC---ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceE
Q 047837 502 HL------YDVKRN---FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVY 572 (882)
Q Consensus 502 ~i------wd~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 572 (882)
.. |++..+ ......+..+...+.+++|+|+|+++++++ ++.+.+|++...... +.+.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----------~~~~i~ 396 (814)
T 3mkq_A 329 FTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----------AFGKCQ 396 (814)
T ss_dssp EEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----------EEEECS
T ss_pred eeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----------CCCceE
Confidence 11 222221 112234456777899999999999999998 899999997632111 124788
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC---CEEEEEeCCCcEEEEEccCCeEEEE
Q 047837 573 DMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG---SYLVCSYSNKSICLYDFISGEMVAK 649 (882)
Q Consensus 573 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~dg~i~iwd~~~~~~~~~ 649 (882)
+++|+|+++++++++.++.|++|+. +. +|...+.+++|+|+| .+|++++.|+.|++||+.+++.+..
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~~~--------~~--~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYYKN--------FK--EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEEET--------TE--ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEEEC--------CC--CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 9999999999999999999999963 22 577788999999998 6888989999999999999999999
Q ss_pred EccCCCCeEEEEECCCCCEEEEE------eCCCeEEEEe
Q 047837 650 AMGHGEVITGVTFLPDCKHIVSV------GGDGLQRVKE 682 (882)
Q Consensus 650 ~~~h~~~v~~l~~s~d~~~l~s~------~~dg~i~vwd 682 (882)
+..|.. .+.|+|||++|+++ +.++.+.+|-
T Consensus 467 ~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 IDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 987764 89999999999999 6666555554
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.4e-43 Score=419.20 Aligned_cols=458 Identities=14% Similarity=0.163 Sum_probs=341.5
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
..++|+||+...++...++.|.|||+.+++.+..+.+|. +.|.+++|+|++++||+|+. |+.|+|||+.+++.+..
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--CcEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEE
Confidence 468999998844444557899999999999999999998 89999999999999999965 89999999999999999
Q ss_pred eeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcc-eeeeeeecCCcccceeEEEEcc-CCCEEEEECC-CcEEEEEc
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSA-MLVMKLKANSSCSAITSACFSS-DAKFIVTAGK-KHLKFWTI 158 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g-~~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~~~-~~i~iwd~ 158 (882)
+.+|...|.+++|+|++++|++++ +.|++||+.++ .....+..|. ..|.+++|+| +++.|++++. +.|++||+
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC--CcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999998 99999999987 6777777776 8999999999 8888888875 89999999
Q ss_pred ccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeE
Q 047837 159 GSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKS 238 (882)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~ 238 (882)
.++.... .+..+.
T Consensus 171 ~~~~~~~--------~~~~~~----------------------------------------------------------- 183 (814)
T 3mkq_A 171 GQSTPNF--------TLTTGQ----------------------------------------------------------- 183 (814)
T ss_dssp TCSSCSE--------EEECCC-----------------------------------------------------------
T ss_pred CCCccee--------EEecCC-----------------------------------------------------------
Confidence 7655411 111110
Q ss_pred eeceeeeeEEEec--CCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEE
Q 047837 239 VDLKVKNGFALSA--SSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIAC 316 (882)
Q Consensus 239 ~~~~~~~~~~~s~--d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (882)
...+.+++|+| ++.+|++++.||.|++||+.+++.+..+. .+...+.++
T Consensus 184 --~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------------------------~~~~~v~~~ 234 (814)
T 3mkq_A 184 --ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---------------------------GHMSNVSFA 234 (814)
T ss_dssp --TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE---------------------------CCSSCEEEE
T ss_pred --CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc---------------------------CCCCCEEEE
Confidence 01227889999 99999999999999999999887665543 344556789
Q ss_pred eecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc-EEEEeeCCCc
Q 047837 317 QFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV-SFSTCSADGT 394 (882)
Q Consensus 317 ~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~-~l~t~~~dg~ 394 (882)
+|+|++. +++++.||.|++||+.+++.. ..+. .|...+.+++|+ +++. .+++++.++.
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~---~~~~----------------~~~~~v~~~~~~-~~~~~~~~~~~~~~~ 294 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVE---KTLN----------------VGLERSWCIATH-PTGRKNYIASGFDNG 294 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEE---EEEC----------------CSSSSEEEEEEC-TTCGGGEEEEEETTE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEE---EEee----------------cCCCcEEEEEEc-cCCCceEEEEEeCCC
Confidence 9999997 555667999999999875432 2232 245667777777 5655 3355555778
Q ss_pred EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc-----CC-----CCEEEeeecc
Q 047837 395 IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS-----SR-----GSTLLLDAHD 464 (882)
Q Consensus 395 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~-----~~~~~~~~~~ 464 (882)
+.+|++.......... +. ...+..+.... ........... .. ........+.
T Consensus 295 ~~~~~~~~~~~~~~~~---------~~--g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 295 FTVLSLGNDEPTLSLD---------PV--GKLVWSGGKNA-------AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp EEEEECSCCSCCEEEC---------SS--SEEEEECCTTS-------CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred EEEEEcCCCCceeEEC---------CC--CCEEEECcccc-------cceeeeeeecccccccccCccceeeeecCCCCc
Confidence 9999987654322111 11 01111000000 00000000000 00 0112234566
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
..+.+++|+|+++ ++++++ ++.+.+|++... ... +...+.+++|+|+++++++++.++.|
T Consensus 357 ~~~~~~~~spdg~-------------~la~~~-~~~~~i~~~~~~-~~~-----~~~~i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 357 VFPQSLAHSPNGR-------------FVTVVG-DGEYVIYTALAW-RNK-----AFGKCQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp SCCSEEEECTTSS-------------EEEEEE-TTEEEEEETTTT-EEE-----EEEECSEEEECTTSSCEEEECTTCCE
T ss_pred cCCceeEECCCCC-------------EEEEec-CCEEEEEECccc-ccc-----CCCceEEEEEeCCCCeEEEEeCCCcE
Confidence 7788999999988 888887 899999998653 222 34567899999999999999999999
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCC---CEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM---EVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
++|+... .+...+.+++|+|++ .+|++++.|+.|++||+.+++.+..+. .+.. .++|+
T Consensus 417 ~l~~~~~--------------~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s 477 (814)
T 3mkq_A 417 KYYKNFK--------------EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID--VNAK---DVIWS 477 (814)
T ss_dssp EEEETTE--------------ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES--SCEE---EEEEC
T ss_pred EEEECCC--------------CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe--cCCC---EEEEc
Confidence 9996321 123577889999998 688999999999999999999999886 4433 89999
Q ss_pred CCCCEEEEE------eCCCcEEEEE
Q 047837 622 PSGSYLVCS------YSNKSICLYD 640 (882)
Q Consensus 622 pdg~~l~~~------~~dg~i~iwd 640 (882)
|||++|+++ +.++.+.+|-
T Consensus 478 ~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 478 DNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred CCCCEEEEEEcCcccCCceEEEEEe
Confidence 999999999 6555444543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-40 Score=358.11 Aligned_cols=242 Identities=21% Similarity=0.330 Sum_probs=216.9
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.+++|+ +++++|++|+.|++|++||+.+.+.+.
T Consensus 149 h~~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~----------------------------------------- 186 (410)
T 1vyh_C 149 HTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECIR----------------------------------------- 186 (410)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEEE-----------------------------------------
T ss_pred cCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeE-----------------------------------------
Confidence 55667777777 789999999999999999998765432
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
.+.+|...|.+++|+|++. ++++|+.|++|++||+.++ ..+..+.+|...|.++.|
T Consensus 187 ----------~~~~h~~~V~~v~~~p~~~-------------~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 187 ----------TMHGHDHNVSSVSIMPNGD-------------HIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp ----------CCCCCSSCEEEEEECSSSS-------------EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE
T ss_pred ----------EEcCCCCCEEEEEEeCCCC-------------EEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEE
Confidence 2457889999999999988 9999999999999999987 678889999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC--------------------CCEEEEEeC
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT--------------------MEVVITVGQ 588 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------------------~~~l~~~~~ 588 (882)
+|++.+|++++.|++|++||+.+......+ ..|...|.+++|+|+ +.+|++|+.
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKECKAEL------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeeEe------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 999999999999999999999876544332 234578999999996 679999999
Q ss_pred CCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCE
Q 047837 589 DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKH 668 (882)
Q Consensus 589 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 668 (882)
|+.|++||+.+++++..+. +|...|.+++|+|+|++|++++.||.|++||+.+++++..+.+|...|++++|+|++.+
T Consensus 317 D~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp TSEEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred CCeEEEEECCCCceEEEEE--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence 9999999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEeCC
Q 047837 669 IVSVGGDGLQRVKEKY 684 (882)
Q Consensus 669 l~s~~~dg~i~vwd~~ 684 (882)
|++++.|+.|++|+++
T Consensus 395 l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 395 VVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTSEEEEEC--
T ss_pred EEEEeCCCcEEEEeCC
Confidence 9999999999999863
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=339.07 Aligned_cols=286 Identities=20% Similarity=0.282 Sum_probs=244.4
Q ss_pred CCCCCcEEEeecCCC-----eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 308 PTIPNAIACQFSTSE-----KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~-----~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
.|...|.+++|++++ .+++++.|++|++|++...... ....+ .+|...|.+++|+ ++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l----------------~gh~~~v~~~~~~-~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSL----------------EGHQLGVVSVDIS-HT 91 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEE----------------CCCSSCEEEEEEC-SS
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeee----------------ccCCCCEEEEEEC-CC
Confidence 466667799999853 3777888999999998764321 11123 3466677777777 78
Q ss_pred CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 462 (882)
+.++++++.|++|++||+.+++.+.. +..
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~~---------------------------------------------------~~~ 120 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIKS---------------------------------------------------IDA 120 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEE---------------------------------------------------EEC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEEE---------------------------------------------------EeC
Confidence 99999999999999999988765432 335
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCC
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 542 (882)
|...+.+++|+|+++ +|++|+.|+.|++|++.++ .....+..|...|.+++|+|++++|++++.|+
T Consensus 121 ~~~~~~~~~~spdg~-------------~l~~g~~dg~v~i~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 121 GPVDAWTLAFSPDSQ-------------YLATGTHVGKVNIFGVESG-KKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp CTTCCCCEEECTTSS-------------EEEEECTTSEEEEEETTTC-SEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCccEEEEEECCCCC-------------EEEEEcCCCcEEEEEcCCC-ceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence 666777888999888 9999999999999999887 66677888999999999999999999999999
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
.|++||+.+++....+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|...|.+++|+|
T Consensus 187 ~i~iwd~~~~~~~~~~------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp 258 (321)
T 3ow8_A 187 IINIFDIATGKLLHTL------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS--GHASWVLNVAFCP 258 (321)
T ss_dssp CEEEEETTTTEEEEEE------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT
T ss_pred eEEEEECCCCcEEEEE------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc--CCCCceEEEEECC
Confidence 9999999876544332 2345789999999999999999999999999999999998887 8999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 623 SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 623 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
++++|++++.|++|++||+.+++++..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999963
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=343.37 Aligned_cols=299 Identities=17% Similarity=0.170 Sum_probs=237.4
Q ss_pred CCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee
Q 047837 311 PNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS 390 (882)
Q Consensus 311 ~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~ 390 (882)
..+.+++|+|||++++++.|+++++||........ ...++.... ......|...|.+++|+ ++ ..|++|+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~v~~~~~s-~d-~~l~~~s 100 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKD---PCAAPNEGF-----CSAGVQTEAGVADLTWV-GE-RGILVAS 100 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESS---GGGTTCGGG-----CSEEEEESSCEEEEEEE-TT-TEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeecc---ccccCCcce-----eeeeeccCCCEEEEEEe-CC-CeEEEEE
Confidence 34678999999999988888888888743210000 000111100 00012356779999998 55 4688999
Q ss_pred CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEE
Q 047837 391 ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSL 470 (882)
Q Consensus 391 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~ 470 (882)
.||+|++||+.+++.+... .....+|.+.|.++
T Consensus 101 ~dg~v~lWd~~~~~~~~~~-----------------------------------------------~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVS-----------------------------------------------KFCKYEHDDIVSTV 133 (344)
T ss_dssp TTSEEEEEEECTTSSCEEE-----------------------------------------------EEEEECCSSCEEEE
T ss_pred CCCEEEEEeccCCCceeEe-----------------------------------------------eccccCCCCCEEEE
Confidence 9999999999887653211 11245899999999
Q ss_pred EEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCC-EEEEEeCCCeEEEEeC
Q 047837 471 SFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGR-KILSCSADRSLVVRDV 549 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~ 549 (882)
+|+|+++ +|++|+.|++|++||+.++ +.+..+.+|...|.+++|++++. +|++++.|++|++||+
T Consensus 134 ~~spdg~-------------~l~sgs~d~~i~iwd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 134 SVLSSGT-------------QAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EECTTSS-------------EEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EECCCCC-------------EEEEEeCCCeEEEEECCCC-cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 9999998 9999999999999999987 88899999999999999999874 7899999999999999
Q ss_pred ccCccceeeeccceecccCCceEEEEEecC-CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC-CEE
Q 047837 550 VETNSAYKISRRHQQLASQGTVYDMDIDPT-MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG-SYL 627 (882)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l 627 (882)
++++....+... .+...+.+++|+|+ +++|++|+.|+.|++||+++++++..+. +|...|++++|+|++ ++|
T Consensus 200 ~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~--~h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 200 RCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA--VHSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp TSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE--CCSSCEEEEEECSSSSCCE
T ss_pred cccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc--CCCCCEEEEEEccCCCeEE
Confidence 977665544322 23357899999995 5688999999999999999999999998 899999999999998 589
Q ss_pred EEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCC
Q 047837 628 VCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCK-HIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~i~vwd~~~~~ 687 (882)
|+|+.|++|+|||+.+++++ .+.+|.+.|++|+|+|+++ +|+|++.|++|++|++.+..
T Consensus 274 asgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 274 ASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99999999999999998765 5788999999999999986 57799999999999997654
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.6e-39 Score=340.67 Aligned_cols=287 Identities=15% Similarity=0.215 Sum_probs=242.6
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
|...|.+++|+|++++|++|+.||.|++||+.+++.+..
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~----------------------------------------- 92 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA----------------------------------------- 92 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-----------------------------------------
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE-----------------------------------------
Confidence 455668899999999999999999999998776543221
Q ss_pred CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEe
Q 047837 320 TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWD 399 (882)
Q Consensus 320 ~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd 399 (882)
+. .|...|.+++|+ +++++|++++.|+.+++|+
T Consensus 93 ------------------------------~~----------------~~~~~v~~~~~s-~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 93 ------------------------------IP----------------LRSSWVMTCAYA-PSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp ------------------------------EE----------------CSSSCEEEEEEC-TTSSEEEEEETTCEEEEEE
T ss_pred ------------------------------ee----------------cCCccEEEEEEC-CCCCEEEEEeCCCeEEEEE
Confidence 11 244556677777 7889999999999999999
Q ss_pred cCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCC
Q 047837 400 LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKD 479 (882)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (882)
+.+.....+ ....+.+|.+.|.++.|++++
T Consensus 126 ~~~~~~~~~-----------------------------------------------~~~~~~~h~~~v~~~~~~~~~--- 155 (340)
T 1got_B 126 LKTREGNVR-----------------------------------------------VSRELAGHTGYLSCCRFLDDN--- 155 (340)
T ss_dssp TTTCSBSCE-----------------------------------------------EEEEEECCSSCEEEEEEEETT---
T ss_pred CccCCCcce-----------------------------------------------eEEEecCCCccEEEEEECCCC---
Confidence 876432100 012355789999999999876
Q ss_pred ccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeee
Q 047837 480 DVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKIS 559 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 559 (882)
.+++++.|+.|++||+.++ ..+..+.+|...|.+++|+|++++|++++.|+.|++||++++.....+
T Consensus 156 -----------~l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~- 222 (340)
T 1got_B 156 -----------QIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF- 222 (340)
T ss_dssp -----------EEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-
T ss_pred -----------cEEEEECCCcEEEEECCCC-cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE-
Confidence 4899999999999999887 788889999999999999999999999999999999999866543332
Q ss_pred ccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
..|...|.+++|+|++++|++++.|++|++||+++++.+..+....+...|++++|+|+|++|++|+.|+.|++|
T Consensus 223 -----~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vw 297 (340)
T 1got_B 223 -----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297 (340)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -----cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEE
Confidence 245579999999999999999999999999999999888887633445679999999999999999999999999
Q ss_pred EccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 640 DFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 640 d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
|+.+++.+..+.+|...|.+++|+|||++|++++.|+.|++||
T Consensus 298 d~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999997
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.8e-39 Score=344.67 Aligned_cols=249 Identities=18% Similarity=0.241 Sum_probs=204.0
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.+++|+ +++. +++++.||+|++||+.+++.....
T Consensus 93 ~~~~V~~~~~s-~d~~-~l~~s~dg~v~lWd~~~~~~~~~~--------------------------------------- 131 (357)
T 4g56_B 93 TEAGVTDVAWV-SEKG-ILVASDSGAVELWEILEKESLLVN--------------------------------------- 131 (357)
T ss_dssp CSSCEEEEEEE-TTTE-EEEEETTSCEEEC--------CCC---------------------------------------
T ss_pred CCCCEEEEEEc-CCCC-EEEEECCCEEEEeeccccceeEEE---------------------------------------
Confidence 56667778887 5664 556778999999998876543210
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
.....+|...|.+++|+|+++ +|++|+.|+.|++||+.++ +.+..+.+|...|.+++|
T Consensus 132 --------~~~~~~h~~~V~~v~~spdg~-------------~l~sgs~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 132 --------KFAKYEHDDIVKTLSVFSDGT-------------QAVSGGKDFSVKVWDLSQK-AVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp --------CEEECCCSSCEEEEEECSSSS-------------EEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEE
T ss_pred --------eeccCCCCCCEEEEEECCCCC-------------EEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEE
Confidence 112347899999999999988 9999999999999999987 788899999999999999
Q ss_pred ccCCC-EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 529 TCNGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 529 s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
++++. ++++++.|+.|++||+++++....... ..+...+.+++|+|++ .+|++++.|+.|++||+++++.+..+
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE
T ss_pred ccCCCceeeeeccCCceEEEECCCCceeeeeee----ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE
Confidence 99875 789999999999999987665443321 2334689999999974 68999999999999999999999998
Q ss_pred EeccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC
Q 047837 607 KQAKDFGDPMKVTVDPSG-SYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP-DCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~i~vwd~~ 684 (882)
. +|...|++++|+|++ ++||+++.|++|+|||+++++++..+ +|.+.|++|+|+| |+++|+|++.||.|++|++.
T Consensus 266 ~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 266 A--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp C--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred e--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 7 899999999999987 68999999999999999999887655 7999999999998 89999999999999999997
Q ss_pred CCC
Q 047837 685 GIL 687 (882)
Q Consensus 685 ~~~ 687 (882)
...
T Consensus 343 ~~~ 345 (357)
T 4g56_B 343 SEG 345 (357)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-39 Score=352.47 Aligned_cols=307 Identities=20% Similarity=0.321 Sum_probs=251.4
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEE
Q 047837 35 SHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYL 112 (882)
Q Consensus 35 ~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~i 112 (882)
...+.+|. ++|++++|+|++++||+|+. |++|+|||+.+++.+.++.+|.+.|.+++|+|+|++|++++ ++|+|
T Consensus 101 ~~~l~gh~--~~V~~~~~~p~~~~l~s~s~--Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 101 KYALSGHR--SPVTRVIFHPVFSVMVSASE--DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp SCEEECCS--SCEEEEEECSSSSEEEEEES--SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred eEeecccC--CcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 45678998 89999999999999999976 89999999999999999999999999999999999999999 99999
Q ss_pred EEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccce
Q 047837 113 WNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESY 191 (882)
Q Consensus 113 Wd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 191 (882)
||+.+++++..+..|. ..|.+++|+|++++|++++. +.|++||+.++.. ...+..|...
T Consensus 177 wd~~~~~~~~~~~~h~--~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~--------~~~~~~h~~~---------- 236 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHD--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--------VKTFTGHREW---------- 236 (410)
T ss_dssp EETTSSCEEECCCCCS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--------EEEEECCSSC----------
T ss_pred EeCCCCceeEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEeCCCcc----------
Confidence 9999999999998887 89999999999999999875 8999999987765 1122233332
Q ss_pred EEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecc
Q 047837 192 FVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQ 271 (882)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~ 271 (882)
+.+++|+|++.+|++|+.||.|++||+.
T Consensus 237 ----------------------------------------------------v~~~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 237 ----------------------------------------------------VRMVRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp ----------------------------------------------------EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------------------------------------------EEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 2788999999999999999999999998
Q ss_pred cceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeee
Q 047837 272 SLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLV 351 (882)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~ 351 (882)
+++....+. .+...+.+++|+|++.+..... ..
T Consensus 265 ~~~~~~~~~---------------------------~h~~~v~~~~~~~~~~~~~~~~--------------------~~ 297 (410)
T 1vyh_C 265 TKECKAELR---------------------------EHRHVVECISWAPESSYSSISE--------------------AT 297 (410)
T ss_dssp TCCEEEEEC---------------------------CCSSCEEEEEECCSCGGGGGGG--------------------CC
T ss_pred CCceeeEec---------------------------CCCceEEEEEEcCcccccchhh--------------------hc
Confidence 876654432 2344456778887754211000 00
Q ss_pred cCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeee
Q 047837 352 SHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGI 431 (882)
Q Consensus 352 ~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (882)
+. ..... ...+.+|++|+.|++|++||+.++..+.
T Consensus 298 ~~--------------------~~~~~-~~~g~~l~sgs~D~~i~iwd~~~~~~~~------------------------ 332 (410)
T 1vyh_C 298 GS--------------------ETKKS-GKPGPFLLSGSRDKTIKMWDVSTGMCLM------------------------ 332 (410)
T ss_dssp SC--------------------C--------CCEEEEEETTSEEEEEETTTTEEEE------------------------
T ss_pred cc--------------------ccccc-CCCCCEEEEEeCCCeEEEEECCCCceEE------------------------
Confidence 00 00000 1357899999999999999998776432
Q ss_pred eeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce
Q 047837 432 FERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD 511 (882)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~ 511 (882)
.+.+|...|.+++|+|+++ +|++|+.|+.|++||+.++ +
T Consensus 333 ---------------------------~~~~h~~~v~~v~~~~~g~-------------~l~s~s~D~~i~vwd~~~~-~ 371 (410)
T 1vyh_C 333 ---------------------------TLVGHDNWVRGVLFHSGGK-------------FILSCADDKTLRVWDYKNK-R 371 (410)
T ss_dssp ---------------------------EEECCSSCEEEEEECSSSS-------------CEEEEETTTEEEEECCTTS-C
T ss_pred ---------------------------EEECCCCcEEEEEEcCCCC-------------EEEEEeCCCeEEEEECCCC-c
Confidence 2457899999999999988 8999999999999999876 7
Q ss_pred eEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 512 LIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 512 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
++..+.+|...|++++|+|++.+|++++.|++|++|+++
T Consensus 372 ~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 372 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 788899999999999999999999999999999999863
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-38 Score=329.75 Aligned_cols=287 Identities=15% Similarity=0.177 Sum_probs=243.0
Q ss_pred eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 239 VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 239 ~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
.|...|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~---------------------------------------- 50 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS---------------------------------------- 50 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE----------------------------------------
Confidence 3455678899999999999999999999998876543321
Q ss_pred cCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 319 STSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 319 s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
+.+ |...|.+++|+ +++++|++|+.|++|++|
T Consensus 51 -------------------------------~~~----------------~~~~v~~~~~~-~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 51 -------------------------------IQV----------------TETPVRAGKFI-ARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp -------------------------------EEC----------------CSSCEEEEEEE-GGGTEEEEEETTSEEEEE
T ss_pred -------------------------------eec----------------cCCcEEEEEEe-CCCCEEEEECCCCEEEEE
Confidence 222 44556667777 789999999999999999
Q ss_pred ecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCC
Q 047837 399 DLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKK 478 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (882)
|+.+++.+. .+.+|...|.+++|+|+++
T Consensus 83 d~~~~~~~~---------------------------------------------------~~~~h~~~v~~~~~~~~~~- 110 (304)
T 2ynn_A 83 NYNTGEKVV---------------------------------------------------DFEAHPDYIRSIAVHPTKP- 110 (304)
T ss_dssp ETTTCCEEE---------------------------------------------------EEECCSSCEEEEEECSSSS-
T ss_pred ECCCCcEEE---------------------------------------------------EEeCCCCcEEEEEEcCCCC-
Confidence 998776432 3568999999999999988
Q ss_pred CccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCcccee
Q 047837 479 DDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
+|++|+.|++|++||+.++......+.+|...|.+++|+| ++.+|++++.|++|++||+........
T Consensus 111 ------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 178 (304)
T 2ynn_A 111 ------------YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178 (304)
T ss_dssp ------------EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE
T ss_pred ------------EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence 9999999999999999887677788999999999999999 688999999999999999987665544
Q ss_pred eeccceecccCCceEEEEEec--CCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCc
Q 047837 558 ISRRHQQLASQGTVYDMDIDP--TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKS 635 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~ 635 (882)
+... +...+..+.|+| ++.+|++++.|++|++||+++++++..+. +|...|.+++|+|++++|++++.||+
T Consensus 179 ~~~~-----~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 179 LTTG-----QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGT 251 (304)
T ss_dssp EECC-----CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred eccC-----CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC--CCCCCEEEEEECCCCCEEEEEcCCCe
Confidence 4332 235788999987 77899999999999999999999999998 89999999999999999999999999
Q ss_pred EEEEEccCCeEEEEEccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeCCC
Q 047837 636 ICLYDFISGEMVAKAMGHGEVITGVTFLPDCK--HIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 636 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~--~l~s~~~dg~i~vwd~~~ 685 (882)
|++||+.+++++..+..|...+.+++|+|++. +|++++.|| +.+|++.+
T Consensus 252 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999999999999999999999999885 577766554 67787754
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=347.90 Aligned_cols=185 Identities=14% Similarity=0.138 Sum_probs=169.4
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
.+++++.++.|++||+.++ ..+..+..|...|.+++|+|++++|++++.|+.|++||+.+......+. .|...
T Consensus 219 ~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~ 291 (425)
T 1r5m_A 219 KFVIPGPKGAIFVYQITEK-TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY------GHSQS 291 (425)
T ss_dssp EEEEECGGGCEEEEETTCS-SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC------CCSSC
T ss_pred EEEEEcCCCeEEEEEcCCC-ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec------CCCcc
Confidence 5889999999999999886 6777888999999999999999999999999999999998765544432 34579
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-----
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE----- 645 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~----- 645 (882)
|.+++|+|++ ++++++.|+.|++||+.+++.+..+. .|...+.+++|+|++++|++++.||.|++||+.+++
T Consensus 292 i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 368 (425)
T 1r5m_A 292 IVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS 368 (425)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----
T ss_pred EEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceee
Confidence 9999999999 99999999999999999999999888 788999999999999999999999999999999988
Q ss_pred ---------------EEEEEccCCC--CeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 646 ---------------MVAKAMGHGE--VITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 646 ---------------~~~~~~~h~~--~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.+..+.+|.. .|++++|+|++++|++++.||.|++||+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 369 LYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred eecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8999999976 999999999999999999999999999863
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=333.56 Aligned_cols=286 Identities=22% Similarity=0.354 Sum_probs=240.0
Q ss_pred EEEEecCCCCCeEEEEEcCC----CCEEEEeecCCCCeEEEEECCCcee--eEEeeccccceeEEEECCCCCEEEEEc--
Q 047837 36 HLMVSHRMPKPLCCVAMSRD----GRYVAAGESGPQPAVLVWDCANLAF--ISELKGHLYGVECIAFSPDGEHLVTVG-- 107 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spd----g~~la~g~~~~d~~I~vwd~~t~~~--~~~l~~h~~~V~~lafspdg~~Las~~-- 107 (882)
..+.+|. +.|.+++|+|+ +++||+|+. |++|+|||+.+++. ...+.+|...|.+++|++++.+|++++
T Consensus 26 ~~~~~H~--~~V~~v~~~~~~~~~~~~l~tgs~--D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 26 KQEQAHD--DAIWSVAWGTNKKENSETVVTGSL--DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EETTSSS--SCEEEEEEC-------CEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eecccCC--CcEEEEEEecCCCCCCCEEEEEcC--CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 3445788 89999999985 679999976 89999999987754 456899999999999999999999999
Q ss_pred CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccc
Q 047837 108 GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGI 186 (882)
Q Consensus 108 ~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 186 (882)
++|++||+.+++++..+..+. ..+.+++|+|++++|++++. +.|++|++.++... ..+..+.
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~--------~~~~~~~------- 164 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--------YSLDTRG------- 164 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT--TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE--------EEEECSS-------
T ss_pred CcEEEEECCCCCEEEEEeCCC--ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee--------EEecCCC-------
Confidence 999999999999999998776 78999999999999999986 89999999876541 1111111
Q ss_pred cccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEE
Q 047837 187 QKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVH 266 (882)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~ 266 (882)
..+.+++|+|++++|++|+.||.|+
T Consensus 165 -------------------------------------------------------~~v~~~~~spdg~~lasg~~dg~i~ 189 (321)
T 3ow8_A 165 -------------------------------------------------------KFILSIAYSPDGKYLASGAIDGIIN 189 (321)
T ss_dssp -------------------------------------------------------SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -------------------------------------------------------ceEEEEEECCCCCEEEEEcCCCeEE
Confidence 1237899999999999999999999
Q ss_pred eeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccce
Q 047837 267 LFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATR 346 (882)
Q Consensus 267 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~ 346 (882)
+||+.+++.+..
T Consensus 190 iwd~~~~~~~~~-------------------------------------------------------------------- 201 (321)
T 3ow8_A 190 IFDIATGKLLHT-------------------------------------------------------------------- 201 (321)
T ss_dssp EEETTTTEEEEE--------------------------------------------------------------------
T ss_pred EEECCCCcEEEE--------------------------------------------------------------------
Confidence 999886543321
Q ss_pred eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcce
Q 047837 347 CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHL 426 (882)
Q Consensus 347 ~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (882)
+ .+|...|.+++|+ +++++|++++.|++|++||+.++....
T Consensus 202 ---~----------------~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~~~~~~------------------- 242 (321)
T 3ow8_A 202 ---L----------------EGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAG------------------- 242 (321)
T ss_dssp ---E----------------CCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTTCCEEE-------------------
T ss_pred ---E----------------cccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCCcceeE-------------------
Confidence 1 1255667788888 789999999999999999998755432
Q ss_pred EeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEc
Q 047837 427 VSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDV 506 (882)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~ 506 (882)
.+.+|...|.+++|+|++. +|++++.|++|++||+
T Consensus 243 --------------------------------~~~~h~~~v~~~~~sp~~~-------------~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 243 --------------------------------TLSGHASWVLNVAFCPDDT-------------HFVSSSSDKSVKVWDV 277 (321)
T ss_dssp --------------------------------EECCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEET
T ss_pred --------------------------------EEcCCCCceEEEEECCCCC-------------EEEEEeCCCcEEEEeC
Confidence 2557899999999999988 9999999999999999
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 507 KRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 507 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
.++ .++..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 278 ~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 278 GTR-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCC-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 887 7888999999999999999999999999999999999963
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.8e-38 Score=332.88 Aligned_cols=290 Identities=19% Similarity=0.317 Sum_probs=240.2
Q ss_pred CceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CE
Q 047837 32 STQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GY 109 (882)
Q Consensus 32 ~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~ 109 (882)
.+....+.+|. +.|.+++|+||+++||+|+. |++|+|||+.+++.+..+..|...|.+++|+|+|++|++++ +.
T Consensus 45 ~~~~~~l~gH~--~~v~~~~~s~d~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHL--AKIYAMHWGTDSRLLLSASQ--DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCS--SCEEEEEECTTSSEEEEEET--TTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred chhheeecCCC--CceEEEEECCCCCEEEEEeC--CCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 34567788999 89999999999999999966 89999999999999999999999999999999999999999 99
Q ss_pred EEEEEcCcc----eeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCcccccc
Q 047837 110 IYLWNWRSA----MLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLG 185 (882)
Q Consensus 110 i~iWd~~~g----~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 185 (882)
|++||+.++ +....+..|. ..|.++.|++++.+++.+.++.|++||+.++.. ...+..|...
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~--------~~~~~~h~~~---- 186 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHT--GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ--------TTTFTGHTGD---- 186 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCS--SCEEEEEEEETTEEEEEETTSCEEEEETTTTEE--------EEEECCCSSC----
T ss_pred EEEEECccCCCcceeEEEecCCC--ccEEEEEECCCCcEEEEECCCcEEEEECCCCcE--------EEEEcCCCCc----
Confidence 999999876 3455666766 899999999998866666779999999987655 1122233333
Q ss_pred ccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeE
Q 047837 186 IQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAV 265 (882)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I 265 (882)
+.+++|+|++++|++|+.||.|
T Consensus 187 ----------------------------------------------------------v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 187 ----------------------------------------------------------VMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp ----------------------------------------------------------EEEEEECTTSSEEEEEETTSCE
T ss_pred ----------------------------------------------------------eEEEEECCCCCEEEEEeCCCcE
Confidence 3789999999999999999999
Q ss_pred EeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccc
Q 047837 266 HLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 266 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~ 345 (882)
++||+.+++...
T Consensus 209 ~~wd~~~~~~~~-------------------------------------------------------------------- 220 (340)
T 1got_B 209 KLWDVREGMCRQ-------------------------------------------------------------------- 220 (340)
T ss_dssp EEEETTTCSEEE--------------------------------------------------------------------
T ss_pred EEEECCCCeeEE--------------------------------------------------------------------
Confidence 999987643321
Q ss_pred eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcc
Q 047837 346 RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAH 425 (882)
Q Consensus 346 ~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (882)
.+. +|...|.+++|+ |++++|++++.||+|++||+.+++.+....
T Consensus 221 ---~~~----------------~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------------- 265 (340)
T 1got_B 221 ---TFT----------------GHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYS--------------- 265 (340)
T ss_dssp ---EEC----------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEEC---------------
T ss_pred ---EEc----------------CCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEc---------------
Confidence 122 255667777777 789999999999999999998765432210
Q ss_pred eEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEE
Q 047837 426 LVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYD 505 (882)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd 505 (882)
...+...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 266 ----------------------------------~~~~~~~v~~~~~s~~g~-------------~l~~g~~d~~i~vwd 298 (340)
T 1got_B 266 ----------------------------------HDNIICGITSVSFSKSGR-------------LLLAGYDDFNCNVWD 298 (340)
T ss_dssp ----------------------------------CTTCCSCEEEEEECTTSS-------------EEEEEETTSEEEEEE
T ss_pred ----------------------------------cCCcccceEEEEECCCCC-------------EEEEECCCCeEEEEE
Confidence 012334688899999888 999999999999999
Q ss_pred cCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 506 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
+.+. ..+..+.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 299 ~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9876 67888999999999999999999999999999999997
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.7e-39 Score=344.42 Aligned_cols=325 Identities=17% Similarity=0.248 Sum_probs=250.1
Q ss_pred eEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEE
Q 047837 69 AVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIV 146 (882)
Q Consensus 69 ~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~ 146 (882)
.+..|+..+..+.++|.+|.+.|.+++|+|++++|++++ ++|+|||+.+++.+..+..|. ..|.+++|+|++++|+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--PWVMECAFAPNGQSVA 124 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--TTCCCCEECTTSSEEE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--CCEEEEEECCCCCEEE
Confidence 566788888999999999999999999999999999999 999999999999888887765 5566666655555555
Q ss_pred EECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceE
Q 047837 147 TAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGIL 226 (882)
Q Consensus 147 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i 226 (882)
++
T Consensus 125 s~------------------------------------------------------------------------------ 126 (380)
T 3iz6_a 125 CG------------------------------------------------------------------------------ 126 (380)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred Ee------------------------------------------------------------------------------
Confidence 54
Q ss_pred EEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhcccccc
Q 047837 227 YIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKL 306 (882)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (882)
+.|+.|++|++.+...... .
T Consensus 127 ---------------------------------~~d~~v~iw~~~~~~~~~~-----------~---------------- 146 (380)
T 3iz6_a 127 ---------------------------------GLDSACSIFNLSSQADRDG-----------N---------------- 146 (380)
T ss_dssp ---------------------------------CSSSCCEEEECCCCSSCCC-----------S----------------
T ss_pred ---------------------------------eCCCcEEEEECCCCccccC-----------C----------------
Confidence 4444444444432110000 0
Q ss_pred CCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 307 TPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 307 ~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
......+ .+|...|.+++|.+.++..|
T Consensus 147 -------------------------------------~~~~~~~----------------~gh~~~v~~~~~~~~~~~~l 173 (380)
T 3iz6_a 147 -------------------------------------MPVSRVL----------------TGHKGYASSCQYVPDQETRL 173 (380)
T ss_dssp -------------------------------------STTCCBC----------------CCCSSCCCCCBCCSSSSSCE
T ss_pred -------------------------------------ccceeec----------------cCCCcceEEEEEecCCCCEE
Confidence 0000012 23555666667765556789
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
++|+.|++|++||+.+++.+...... ...+|...
T Consensus 174 ~s~s~D~~i~~wd~~~~~~~~~~~~~----------------------------------------------~~~~h~~~ 207 (380)
T 3iz6_a 174 ITGSGDQTCVLWDVTTGQRISIFGSE----------------------------------------------FPSGHTAD 207 (380)
T ss_dssp EEECTTSCEEEECTTTCCEEEEECCC----------------------------------------------SSSSCCSC
T ss_pred EEECCCCcEEEEEcCCCcEEEEeecc----------------------------------------------cCCCCccC
Confidence 99999999999999987654321000 01368889
Q ss_pred EEEEEEec-CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 047837 467 ILSLSFSL-SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLV 545 (882)
Q Consensus 467 v~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 545 (882)
|.+++|++ ++. ++++|+.|+.|++||++.....+..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 208 v~~~~~~~~~~~-------------~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 208 VLSLSINSLNAN-------------MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274 (380)
T ss_dssp EEEEEECSSSCC-------------EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred eEEEEeecCCCC-------------EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence 99999987 455 8999999999999999865577888999999999999999999999999999999
Q ss_pred EEeCccCccceeeecccee-cccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe--ccCCCCcEEEEECC
Q 047837 546 VRDVVETNSAYKISRRHQQ-LASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ--AKDFGDPMKVTVDP 622 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~sp 622 (882)
+||++++.....+...... ..+...|.+++|+|+|++|++|+.|+.|++||+.+++.+..+.. .+|.+.|++++|+|
T Consensus 275 lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp EEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred EEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence 9999976654443222111 11223589999999999999999999999999999998887732 37899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCe
Q 047837 623 SGSYLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 623 dg~~l~~~~~dg~i~iwd~~~~~ 645 (882)
||++|++|+.|++|+||++...+
T Consensus 355 dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 355 DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999987654
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.1e-38 Score=326.41 Aligned_cols=292 Identities=14% Similarity=0.198 Sum_probs=239.8
Q ss_pred ceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEE
Q 047837 33 TQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYI 110 (882)
Q Consensus 33 ~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i 110 (882)
+..+.+.+|. +.|.+++|+||+++||+|+. |++|+|||+.+++.++.+.+|...|.+++|+|++++|++++ ++|
T Consensus 4 ~~~~~~~~h~--~~V~~~~fsp~~~~l~s~~~--dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRS--DRVKGIDFHPTEPWVLTTLY--SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEEC--SCEEEEEECSSSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eeEEeecCCC--CceEEEEECCCCCEEEEEcC--CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 3456788999 89999999999999999965 89999999999999999999999999999999999999999 999
Q ss_pred EEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccccccc
Q 047837 111 YLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKE 189 (882)
Q Consensus 111 ~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (882)
++||+.+++++..+..|. ..|.+++|+|++++|++++. ++|++||+.++... ...+.+|...
T Consensus 80 ~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-------~~~~~~h~~~-------- 142 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------EQTFEGHEHF-------- 142 (304)
T ss_dssp EEEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE-------EEEECCCCSC--------
T ss_pred EEEECCCCcEEEEEeCCC--CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch-------hhhhcccCCc--------
Confidence 999999999999999887 89999999999999999986 89999999765331 1122233333
Q ss_pred ceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec-CCCEEEEEecCCeEEee
Q 047837 190 SYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA-SSKLIACACSNGAVHLF 268 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~dg~I~vw 268 (882)
+.+++|+| ++.+|++|+.||.|++|
T Consensus 143 ------------------------------------------------------v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 143 ------------------------------------------------------VMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp ------------------------------------------------------EEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred ------------------------------------------------------EEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 38899999 67899999999999999
Q ss_pred ecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceee
Q 047837 269 DIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCC 348 (882)
Q Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~ 348 (882)
|+.++.....+
T Consensus 169 d~~~~~~~~~~--------------------------------------------------------------------- 179 (304)
T 2ynn_A 169 SLGQSTPNFTL--------------------------------------------------------------------- 179 (304)
T ss_dssp ETTCSSCSEEE---------------------------------------------------------------------
T ss_pred ECCCCCcccee---------------------------------------------------------------------
Confidence 98654322111
Q ss_pred eeecCcceeeeecccCCCCCCCCCcceeeecc-CCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceE
Q 047837 349 VLVSHSACIWDIKNLGCENMHDPSVSCVARGC-TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLV 427 (882)
Q Consensus 349 ~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (882)
..+ |...+..+.|++ +++.+|++++.|++|++||+.+++.+.
T Consensus 180 -~~~----------------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~-------------------- 222 (304)
T 2ynn_A 180 -TTG----------------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-------------------- 222 (304)
T ss_dssp -ECC----------------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--------------------
T ss_pred -ccC----------------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--------------------
Confidence 011 223344444442 477899999999999999998765432
Q ss_pred eeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcC
Q 047837 428 SAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVK 507 (882)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~ 507 (882)
.+.+|...|.+++|+|+++ +|++|+.||+|++||+.
T Consensus 223 -------------------------------~~~~h~~~v~~~~~~p~~~-------------~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 223 -------------------------------TLEGHMSNVSFAVFHPTLP-------------IIISGSEDGTLKIWNSS 258 (304)
T ss_dssp -------------------------------EEECCSSCEEEEEECSSSS-------------EEEEEETTSCEEEEETT
T ss_pred -------------------------------eeCCCCCCEEEEEECCCCC-------------EEEEEcCCCeEEEEECC
Confidence 3568999999999999988 99999999999999998
Q ss_pred CCceeEEEeecCCCCEEEEEEccCCC--EEEEEeCCCeEEEEeCcc
Q 047837 508 RNFDLIESIDDHSAAVTAVKFTCNGR--KILSCSADRSLVVRDVVE 551 (882)
Q Consensus 508 ~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~ 551 (882)
+. +....+..|...+.+++|+|++. ++++++.|| +.+|++..
T Consensus 259 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 259 TY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp TC-CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CC-ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 86 78889999999999999999875 577777666 78888763
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.1e-38 Score=333.66 Aligned_cols=290 Identities=17% Similarity=0.241 Sum_probs=242.8
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
|...|.+++|+|++++|++|+.||.|++||..+++....+
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~---------------------------------------- 102 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV---------------------------------------- 102 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----------------------------------------
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE----------------------------------------
Confidence 4556689999999999999999999999997764332111
Q ss_pred CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEe
Q 047837 320 TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWD 399 (882)
Q Consensus 320 ~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd 399 (882)
. .|...|.+++|+ |++..|++++.|+.+++|+
T Consensus 103 -------------------------------~----------------~~~~~v~~~~~s-p~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 103 -------------------------------T----------------MPCTWVMACAYA-PSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp -------------------------------E----------------CSSSCCCEEEEC-TTSSEEEEESTTSEEEEEE
T ss_pred -------------------------------e----------------cCCCCEEEEEEC-CCCCEEEEeeCCCCEEEEE
Confidence 1 134456777777 7888899999999999998
Q ss_pred cCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCC
Q 047837 400 LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKD 479 (882)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (882)
+......... .....+.+|...|.+++|+|++.
T Consensus 135 ~~~~~~~~~~---------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~-- 167 (354)
T 2pbi_B 135 LTFDKNENMA---------------------------------------------AKKKSVAMHTNYLSACSFTNSDM-- 167 (354)
T ss_dssp CCCCTTCCSG---------------------------------------------GGCEEEEECSSCEEEEEECSSSS--
T ss_pred Eecccccccc---------------------------------------------ccceeeeccCCcEEEEEEeCCCC--
Confidence 8643211000 01123457999999999999988
Q ss_pred ccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEeCccCcccee
Q 047837 480 DVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC--NGRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
.|++++.|++|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.|+.|++||++++.....
T Consensus 168 -----------~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~ 235 (354)
T 2pbi_B 168 -----------QILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235 (354)
T ss_dssp -----------EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred -----------EEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 8999999999999999887 78889999999999999988 578999999999999999987654333
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC 637 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~ 637 (882)
+ ..|...|.+++|+|++.+|++++.|++|++||+++++.+..+....+...+.+++|+|+|++|++++.|+.|+
T Consensus 236 ~------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 236 F------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp E------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred e------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 2 2355799999999999999999999999999999988887776444456789999999999999999999999
Q ss_pred EEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 638 LYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 638 iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
+||+.+++.+..+.+|...|++++|+|||++|++++.|+.|++|+
T Consensus 310 vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 310 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999999999996
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.9e-38 Score=339.70 Aligned_cols=298 Identities=18% Similarity=0.244 Sum_probs=241.2
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
|...|.+++|+|++++|++|+.||+|++||+.+++....
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~----------------------------------------- 103 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA----------------------------------------- 103 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE-----------------------------------------
Confidence 344558899999999999999999999999876543321
Q ss_pred CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEe
Q 047837 320 TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWD 399 (882)
Q Consensus 320 ~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd 399 (882)
+. .|...|.+++|+ +++++|++++.|+.+++|+
T Consensus 104 ------------------------------~~----------------~h~~~v~~~~~s-~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 104 ------------------------------IK----------------LHCPWVMECAFA-PNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp ------------------------------EE----------------CCCTTCCCCEEC-TTSSEEEECCSSSCCEEEE
T ss_pred ------------------------------Ee----------------cCCCCEEEEEEC-CCCCEEEEeeCCCcEEEEE
Confidence 11 245567777887 7899999999999999999
Q ss_pred cCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCC
Q 047837 400 LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKD 479 (882)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (882)
+.+........ .....+.+|.+.|.++.|.|+..
T Consensus 137 ~~~~~~~~~~~--------------------------------------------~~~~~~~gh~~~v~~~~~~~~~~-- 170 (380)
T 3iz6_a 137 LSSQADRDGNM--------------------------------------------PVSRVLTGHKGYASSCQYVPDQE-- 170 (380)
T ss_dssp CCCCSSCCCSS--------------------------------------------TTCCBCCCCSSCCCCCBCCSSSS--
T ss_pred CCCCccccCCc--------------------------------------------cceeeccCCCcceEEEEEecCCC--
Confidence 87543211000 00112457888898899988653
Q ss_pred ccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe-----ecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCc
Q 047837 480 DVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI-----DDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-----~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
..|++|+.|++|++||+.++ ..+..+ .+|...|.+++|++ ++.+|++++.|++|++||++...
T Consensus 171 ----------~~l~s~s~D~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 171 ----------TRLITGSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp ----------SCEEEECTTSCEEEECTTTC-CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred ----------CEEEEECCCCcEEEEEcCCC-cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 26999999999999999987 555555 57999999999987 88999999999999999998544
Q ss_pred cceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc-----CCCCcEEEEECCCCCEEE
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK-----DFGDPMKVTVDPSGSYLV 628 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~l~ 628 (882)
....... +|.+.|.+++|+|++++|++++.|++|++||+++++.+..+..+. +...+++++|+|+|++|+
T Consensus 240 ~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 240 RAVRTYH-----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp CCCEEEC-----CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred cceEEEC-----CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 4333332 455899999999999999999999999999999999988876321 123489999999999999
Q ss_pred EEeCCCcEEEEEccCCeEEEEE----ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 629 CSYSNKSICLYDFISGEMVAKA----MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 629 ~~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
+|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++.|++|++|++.+.+
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999988887 6799999999999999999999999999999997654
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-36 Score=322.71 Aligned_cols=328 Identities=16% Similarity=0.178 Sum_probs=270.7
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
+...+.+++|+|||++++++..++.+..|.......... ..++...+.+++|+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~h~~~v~~~~~~ 60 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN---------------------------TLNHGEVVCAVTIS 60 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE---------------------------EECCSSCCCEEEEC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce---------------------------eccCCCceEEEEEe
Confidence 344568999999999999998888777765543322211 11355567799999
Q ss_pred CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEe
Q 047837 320 TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWD 399 (882)
Q Consensus 320 ~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd 399 (882)
|++++++++.|+.|++||+.+++.......+. ...|...|.+++|+ +++++|++++.||.|++||
T Consensus 61 ~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD--------------CLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp SSSSEEEEECBSEEEEEETTSTTCCSCSEEEE--------------CSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEE
T ss_pred cCCcEEEEcCCCeEEEEECCCCCceeeeeccc--------------ccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEE
Confidence 99998887779999999998765433322222 12467778888888 7999999999999999999
Q ss_pred cCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCC
Q 047837 400 LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKD 479 (882)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (882)
+.+++... ...+..|...|.+++|+|+++
T Consensus 126 ~~~~~~~~-------------------------------------------------~~~~~~~~~~i~~~~~~~~~~-- 154 (337)
T 1gxr_A 126 LAAPTPRI-------------------------------------------------KAELTSSAPACYALAISPDSK-- 154 (337)
T ss_dssp CCCC--EE-------------------------------------------------EEEEECSSSCEEEEEECTTSS--
T ss_pred CCCCCcce-------------------------------------------------eeecccCCCceEEEEECCCCC--
Confidence 98754211 123456888899999999888
Q ss_pred ccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeee
Q 047837 480 DVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKIS 559 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 559 (882)
++++++.|+.|++||+.++ +.+..+..|...|.+++|+|++++|++++.|+.|++||+++.+.....
T Consensus 155 -----------~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~- 221 (337)
T 1gxr_A 155 -----------VCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH- 221 (337)
T ss_dssp -----------EEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred -----------EEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-
Confidence 8999999999999999887 778888999999999999999999999999999999999876544332
Q ss_pred ccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
.+...+.+++|+|++++|++++.|+.|++||+.+++.. .+. .|...+.+++|+|++++|++++.||.|++|
T Consensus 222 ------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 222 ------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp ------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 23468999999999999999999999999999988764 343 788999999999999999999999999999
Q ss_pred EccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 640 DFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 640 d~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
|+.+++.+... .|...|.+++|+|++++|++++.||.|++||+
T Consensus 293 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 293 RTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999888555 48899999999999999999999999999996
No 28
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.5e-38 Score=334.71 Aligned_cols=307 Identities=18% Similarity=0.210 Sum_probs=221.9
Q ss_pred eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC----CCeEEEEECCCceeeE----EeeccccceeE
Q 047837 22 CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP----QPAVLVWDCANLAFIS----ELKGHLYGVEC 93 (882)
Q Consensus 22 ~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~----d~~I~vwd~~t~~~~~----~l~~h~~~V~~ 93 (882)
.....|++... ...+|. +.|.+++|||||++||+|+.+. |+.|++|+..++.+.. ...+|...|.+
T Consensus 26 ~~~~~w~~p~~----~p~~H~--~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~ 99 (357)
T 4g56_B 26 SKGSAWGRPVT----APACME--VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTD 99 (357)
T ss_dssp ------------------CCC--SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEE
T ss_pred ccccccCCCCC----Cccccc--CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEE
Confidence 46788887643 235788 8999999999999999997532 6789999998876543 34569999999
Q ss_pred EEECCCCCEEEEEc-CEEEEEEcCcceeeee--eecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccc
Q 047837 94 IAFSPDGEHLVTVG-GYIYLWNWRSAMLVMK--LKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLN 169 (882)
Q Consensus 94 lafspdg~~Las~~-~~i~iWd~~~g~~~~~--~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~ 169 (882)
++|+||+++|+++. ++|+|||+.+++.+.. +....|...|.+++|+||+++|++++. +.|++||+.+++.
T Consensus 100 ~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~------ 173 (357)
T 4g56_B 100 VAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV------ 173 (357)
T ss_dssp EEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE------
T ss_pred EEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE------
Confidence 99999998887777 9999999999875543 333334489999999999999999876 8999999987765
Q ss_pred cCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEE
Q 047837 170 KGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFAL 249 (882)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (882)
...+..|... +.+++|
T Consensus 174 --~~~~~~h~~~--------------------------------------------------------------v~~v~~ 189 (357)
T 4g56_B 174 --LKSYNAHSSE--------------------------------------------------------------VNCVAA 189 (357)
T ss_dssp --EEEECCCSSC--------------------------------------------------------------EEEEEE
T ss_pred --EEEEcCCCCC--------------------------------------------------------------EEEEEE
Confidence 1122233333 378999
Q ss_pred ecCCC-EEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEe
Q 047837 250 SASSK-LIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVY 328 (882)
Q Consensus 250 s~d~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~ 328 (882)
++++. ++++++.||.|++||+.+++....+.
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~------------------------------------------------ 221 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRID------------------------------------------------ 221 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCBCBCC------------------------------------------------
T ss_pred ccCCCceeeeeccCCceEEEECCCCceeeeee------------------------------------------------
Confidence 99875 78899999999999988765432221
Q ss_pred CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeee
Q 047837 329 GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSK 408 (882)
Q Consensus 329 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~ 408 (882)
...|...+.+++|+|.++.+|++|+.|+.|++||+.+++.+.
T Consensus 222 -------------------------------------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~- 263 (357)
T 4g56_B 222 -------------------------------------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ- 263 (357)
T ss_dssp -------------------------------------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-
T ss_pred -------------------------------------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE-
Confidence 012445667778875567889999999999999998765432
Q ss_pred cccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCC
Q 047837 409 DVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDS 488 (882)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 488 (882)
.+.+|...|.+++|+|++.
T Consensus 264 --------------------------------------------------~~~~~~~~v~~l~~sp~~~----------- 282 (357)
T 4g56_B 264 --------------------------------------------------TSAVHSQNITGLAYSYHSS----------- 282 (357)
T ss_dssp --------------------------------------------------EECCCSSCEEEEEECSSSS-----------
T ss_pred --------------------------------------------------EEeccceeEEEEEEcCCCC-----------
Confidence 2457888999999999864
Q ss_pred ceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCcc
Q 047837 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNS 554 (882)
Q Consensus 489 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~ 554 (882)
.+|++|+.|++|+|||+.++ +.+.. .+|...|++++|+| ++++|++++.|++|++|++.+...
T Consensus 283 -~~lasgs~D~~i~iwd~~~~-~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 283 -PFLASISEDCTVAVLDADFS-EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp -CCEEEEETTSCEEEECTTSC-EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred -CEEEEEeCCCEEEEEECCCC-cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 27999999999999999876 55544 47999999999998 899999999999999999975443
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-37 Score=325.37 Aligned_cols=296 Identities=15% Similarity=0.209 Sum_probs=234.4
Q ss_pred CcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee
Q 047837 312 NAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS 390 (882)
Q Consensus 312 ~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~ 390 (882)
.+.+++|+|+|+ +++++.|+.|++||+..+........ ..+|...|.+++|+ +++++|++++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~----------------~~~h~~~v~~~~~s-p~g~~l~s~s 80 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL----------------SEGHQRTVRKVAWS-PCGNYLASAS 80 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE----------------CSSCSSCEEEEEEC-TTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee----------------ccccCCcEEEEEEC-CCCCEEEEEE
Confidence 577999999997 55577799999999976532211111 13577788888888 8999999999
Q ss_pred CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEE
Q 047837 391 ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSL 470 (882)
Q Consensus 391 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~ 470 (882)
.|+++++|++..+.... ...+.+|...|.++
T Consensus 81 ~D~~v~iw~~~~~~~~~-------------------------------------------------~~~~~~h~~~v~~v 111 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFEC-------------------------------------------------VTTLEGHENEVKSV 111 (345)
T ss_dssp TTSCEEEEEECCC-EEE-------------------------------------------------EEEECCCSSCEEEE
T ss_pred CCCcEEEEEccCCCeEE-------------------------------------------------EEEccCCCCCceEE
Confidence 99999999987543210 12356899999999
Q ss_pred EEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--eeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 471 SFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--DLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
+|+|+++ +|++|+.|+.|++||+.+.. ..+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 112 ~~sp~~~-------------~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 112 AWAPSGN-------------LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EECTTSS-------------EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred EEeCCCC-------------EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999988 99999999999999997642 44667889999999999999999999999999999999
Q ss_pred CccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC---------------ceEEEEEeccCCC
Q 047837 549 VVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG---------------KLIRSFKQAKDFG 613 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~---------------~~~~~~~~~~~~~ 613 (882)
......... ....+|...|.+++|+|++++|++++.|++|++||.... +++..+. ..|..
T Consensus 179 ~~~~~~~~~----~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 253 (345)
T 3fm0_A 179 EEEDDWVCC----ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSR 253 (345)
T ss_dssp EETTEEEEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSS
T ss_pred ecCCCEEEE----EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec-CCCCC
Confidence 875432211 122345689999999999999999999999999997432 2333443 23788
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEEccCCe--------E-EEEEccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeC
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYDFISGE--------M-VAKAMGHGEVITGVTFLPDC-KHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~--------~-~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~i~vwd~ 683 (882)
.|.+++|+|++.+|++++.|+.|++|+...+. . .....+|...|++++|+|++ .+|++++.||.|++|++
T Consensus 254 ~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 99999999999999999999999999987542 1 22346799999999999998 49999999999999999
Q ss_pred CCCCCCcc
Q 047837 684 YGILPPRN 691 (882)
Q Consensus 684 ~~~~~~~~ 691 (882)
...+.+..
T Consensus 334 ~~~~~~~~ 341 (345)
T 3fm0_A 334 QRPEGLHH 341 (345)
T ss_dssp CC------
T ss_pred cCCCCccc
Confidence 88776543
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=323.86 Aligned_cols=289 Identities=20% Similarity=0.287 Sum_probs=236.1
Q ss_pred ceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEE
Q 047837 33 TQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYI 110 (882)
Q Consensus 33 ~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i 110 (882)
+....+.+|. +.|.|++|+||+++||+|+. |++|+|||..+++....+..|...|.+++|+|+|.+||+++ +.+
T Consensus 55 ~~~~~l~gH~--~~V~~~~~s~d~~~l~s~s~--Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 55 KTRRTLKGHG--NKVLCMDWCKDKRRIVSSSQ--DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp CEEEEEECCS--SCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred EEEEEecCCC--CeEEEEEECCCCCEEEEEeC--CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 4567889999 89999999999999999966 99999999999999999999999999999999999999999 999
Q ss_pred EEEEcCcc------eeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccc
Q 047837 111 YLWNWRSA------MLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVN 183 (882)
Q Consensus 111 ~iWd~~~g------~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 183 (882)
++|++... .....+..|. ..|.+++|+|++..|++++. ++|++||+.+++. ...+.+|...+
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~--------~~~~~~h~~~v- 199 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHT--NYLSACSFTNSDMQILTASGDGTCALWDVESGQL--------LQSFHGHGADV- 199 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--------EEEEECCSSCE-
T ss_pred EEEEEeccccccccccceeeeccC--CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE--------EEEEcCCCCCe-
Confidence 99998643 3445566665 89999999999998888875 8999999987765 12233333332
Q ss_pred ccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec--CCCEEEEEec
Q 047837 184 LGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA--SSKLIACACS 261 (882)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~ 261 (882)
.+++|+| ++.+|++|+.
T Consensus 200 -------------------------------------------------------------~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 200 -------------------------------------------------------------LCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp -------------------------------------------------------------EEEEECCCSSCCEEEEEET
T ss_pred -------------------------------------------------------------EEEEEEeCCCCCEEEEEeC
Confidence 6677766 5789999999
Q ss_pred CCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccc
Q 047837 262 NGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDV 341 (882)
Q Consensus 262 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~ 341 (882)
||.|++||+.+++.+..
T Consensus 219 Dg~v~~wd~~~~~~~~~--------------------------------------------------------------- 235 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQA--------------------------------------------------------------- 235 (354)
T ss_dssp TSCEEEEETTTCCEEEE---------------------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEE---------------------------------------------------------------
Confidence 99999999876543211
Q ss_pred cccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeec
Q 047837 342 NEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPM 421 (882)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 421 (882)
+. .|...|.+++|+ |++.+|++++.|++|++||+...+.+....
T Consensus 236 --------~~----------------~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~----------- 279 (354)
T 2pbi_B 236 --------FE----------------THESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADREVAIYS----------- 279 (354)
T ss_dssp --------EC----------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred --------ec----------------CCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----------
Confidence 11 255667777777 788999999999999999998764332110
Q ss_pred CCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcE
Q 047837 422 STAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTI 501 (882)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v 501 (882)
...+...+.+++|+|++. ++++|+.|+.|
T Consensus 280 --------------------------------------~~~~~~~~~~~~~s~~g~-------------~l~~g~~d~~i 308 (354)
T 2pbi_B 280 --------------------------------------KESIIFGASSVDFSLSGR-------------LLFAGYNDYTI 308 (354)
T ss_dssp --------------------------------------CTTCCSCEEEEEECTTSS-------------EEEEEETTSCE
T ss_pred --------------------------------------CCCcccceeEEEEeCCCC-------------EEEEEECCCcE
Confidence 011234677888888887 99999999999
Q ss_pred EEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 502 HLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 502 ~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
++||+.++ ..+..+.+|...|.+++|+|++++|++++.|++|++|+
T Consensus 309 ~vwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 309 NVWDVLKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999877 67788899999999999999999999999999999996
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.1e-36 Score=317.41 Aligned_cols=243 Identities=20% Similarity=0.353 Sum_probs=210.3
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.+++|+ +++++|++++.||.|++||+.+++.+.
T Consensus 64 h~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~----------------------------------------- 101 (312)
T 4ery_A 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLK----------------------------------------- 101 (312)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEE-----------------------------------------
T ss_pred CCCceEEEEEc-CCCCEEEEECCCCEEEEEECCCCcEEE-----------------------------------------
Confidence 55667777787 789999999999999999998765432
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKF 528 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~ 528 (882)
.+.+|...|.+++|+|++. ++++|+.|+.|++||+.++ +.+..+..|...|.+++|
T Consensus 102 ----------~~~~~~~~v~~~~~~~~~~-------------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 102 ----------TLKGHSNYVFCCNFNPQSN-------------LIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp ----------EEECCSSCEEEEEECSSSS-------------EEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEE
T ss_pred ----------EEcCCCCCEEEEEEcCCCC-------------EEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEE
Confidence 2457889999999999988 9999999999999999887 678888999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe
Q 047837 529 TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ 608 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 608 (882)
+|++++|++++.|+.|++||+.++.....+... +...+..++|+|++++|++++.|+.|++||+.+++.+..+.
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~- 231 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-----DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT- 231 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCS-----SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEecc-----CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-
Confidence 999999999999999999999876554443322 23579999999999999999999999999999999998887
Q ss_pred ccCCCCc---EEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEe--CCCeEEEEeC
Q 047837 609 AKDFGDP---MKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVG--GDGLQRVKEK 683 (882)
Q Consensus 609 ~~~~~~v---~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~--~dg~i~vwd~ 683 (882)
+|.... ......+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+.
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 232 -GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp -SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred -ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 554433 2333446899999999999999999999999999999999999999999999999997 6999999986
Q ss_pred C
Q 047837 684 Y 684 (882)
Q Consensus 684 ~ 684 (882)
.
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 32
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-36 Score=328.23 Aligned_cols=306 Identities=19% Similarity=0.280 Sum_probs=243.7
Q ss_pred CCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeeccc--CCCCCCCCCcceeeeccCCCcEE
Q 047837 309 TIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNL--GCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 309 ~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
+...+.+++|+|+|++++++.++.+++|++.+++... .+.+|.......... .....+...|.+++|+ +++++|
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l 138 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFL 138 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEEC-TTSSEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEEC-CCCCEE
Confidence 4455679999999999988889999999998775432 333333211111100 0011244568999999 899999
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
++++.|++|++||+.+++.+. .+.+|...
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---------------------------------------------------~~~~h~~~ 167 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---------------------------------------------------ILQGHEQD 167 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---------------------------------------------------EECCCSSC
T ss_pred EEEcCCCeEEEEECCCCcEEE---------------------------------------------------EEccCCCC
Confidence 999999999999998765432 35689999
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLV 545 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~ 545 (882)
|.+++|+|++. +|++++.|++|++||+.++ +....+. +...+.+++|+| ++++|++++.|+.|+
T Consensus 168 v~~~~~~p~~~-------------~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~ 232 (393)
T 1erj_A 168 IYSLDYFPSGD-------------KLVSGSGDRTVRIWDLRTG-QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVR 232 (393)
T ss_dssp EEEEEECTTSS-------------EEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEE
T ss_pred EEEEEEcCCCC-------------EEEEecCCCcEEEEECCCC-eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 99999999988 8999999999999999887 5555554 667899999999 899999999999999
Q ss_pred EEeCccCccceeeeccc-eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC------------ceEEEEEeccCC
Q 047837 546 VRDVVETNSAYKISRRH-QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG------------KLIRSFKQAKDF 612 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~------------~~~~~~~~~~~~ 612 (882)
+||+.++.....+.... ....|...|.+++|+|++++|++++.|+.|++||+++. .+...+. +|.
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~--~h~ 310 (393)
T 1erj_A 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--GHK 310 (393)
T ss_dssp EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE--CCS
T ss_pred EEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe--ccc
Confidence 99998765544432211 12356789999999999999999999999999999763 3444555 889
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECC------CCCEEEEEeCCCeEEEEeCCCC
Q 047837 613 GDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP------DCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 613 ~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~------d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
..|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|++ ++++|++++.||.|++|++...
T Consensus 311 ~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999999999999999999999999999999999999999999999986 6889999999999999998643
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-38 Score=344.41 Aligned_cols=343 Identities=13% Similarity=0.195 Sum_probs=268.2
Q ss_pred ceeeeeEEEecCCC-EEEEE----------ecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCC
Q 047837 241 LKVKNGFALSASSK-LIACA----------CSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPT 309 (882)
Q Consensus 241 ~~~~~~~~~s~d~~-~l~~~----------~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (882)
...+.+++|+|+++ +|+++ +.||.|++|++.+++....+. ...+
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-------------------------~~~~ 66 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-------------------------SLQV 66 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-------------------------CCCC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-------------------------EEec
Confidence 34568999999987 99999 889999999998765321110 1134
Q ss_pred CCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccc-eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 310 IPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEAT-RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 310 ~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
...+.+++|+|+++ +++++.|+.|++||+....... ....+ ..|...|.+++|++.++.+|+
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~----------------~~h~~~v~~~~~~~~~~~~l~ 130 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF----------------SNHSSSVKTVKFNAKQDNVLA 130 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC----------------CCSSSCCCEEEECSSSTTBEE
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc----------------cCCccceEEEEEcCCCCCEEE
Confidence 55678999999997 5556679999999997632111 11222 347778888888833389999
Q ss_pred EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 388 TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 388 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
+++.||.|++||+.+.+....... .. .......|...|
T Consensus 131 s~~~dg~v~iwd~~~~~~~~~~~~---~~---------------------------------------~~~~~~~~~~~v 168 (416)
T 2pm9_A 131 SGGNNGEIFIWDMNKCTESPSNYT---PL---------------------------------------TPGQSMSSVDEV 168 (416)
T ss_dssp EECSSSCEEBCBTTTTSSCTTTCC---CB---------------------------------------CCCCSCCSSCCC
T ss_pred EEcCCCeEEEEECCCCcccccccc---cc---------------------------------------ccccccCCCCCe
Confidence 999999999999987652110000 00 000124688889
Q ss_pred EEEEEecC-CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC------CCCEEEEEEccCC-CEEEEEe
Q 047837 468 LSLSFSLS-SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH------SAAVTAVKFTCNG-RKILSCS 539 (882)
Q Consensus 468 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h------~~~v~~~~~s~~~-~~l~s~~ 539 (882)
.+++|+|+ +. ++++++.|+.|++||+.++ +.+..+..| ...|.+++|+|++ .+|++++
T Consensus 169 ~~~~~~~~~~~-------------~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 169 ISLAWNQSLAH-------------VFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CEEEECSSCTT-------------EEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred eEEEeCCCCCc-------------EEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 99999998 45 8999999999999999887 667777766 7899999999997 6899999
Q ss_pred CCC---eEEEEeCccCccceeeeccceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCc
Q 047837 540 ADR---SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDP 615 (882)
Q Consensus 540 ~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v 615 (882)
.|+ .|++||+++......... ..|...|.+++|+| ++++|++++.|+.|++||+++++.+..+. .|...|
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--~~~~~v 308 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQTLN----QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--ARGNWC 308 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBCCC----SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--CSSSCC
T ss_pred CCCCCceEEEEeCCCCCCCcEEee----cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--CCCCce
Confidence 998 999999987543333222 13457999999999 99999999999999999999999999998 889999
Q ss_pred EEEEECCCC-CEEEEEeCCCcEEEEEccCCeEEEEE-----------------------------------ccCCCCeEE
Q 047837 616 MKVTVDPSG-SYLVCSYSNKSICLYDFISGEMVAKA-----------------------------------MGHGEVITG 659 (882)
Q Consensus 616 ~~~~~spdg-~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------------~~h~~~v~~ 659 (882)
.+++|+|++ ++|++++.|+.|++||+.+++..... ..|..++.+
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPA 388 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccc
Confidence 999999999 89999999999999999876432111 116678889
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 660 VTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 660 l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
++|+|||++|++++.|+.|+||++.+.
T Consensus 389 ~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 389 AHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred eEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 999999999999999999999998753
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=320.65 Aligned_cols=297 Identities=14% Similarity=0.128 Sum_probs=227.5
Q ss_pred eeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 242 KVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 242 ~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
..+.+++|+|||++|++++ |+++|+||........... .+.... ......+...+.+++|+|+
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~--------~~~~~~--------~~~~~~~~~~v~~~~~s~d 93 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCA--------APNEGF--------CSAGVQTEAGVADLTWVGE 93 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGG--------TTCGGG--------CSEEEEESSCEEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccc--------cCCcce--------eeeeeccCCCEEEEEEeCC
Confidence 4468999999999998877 8889999854321111100 000000 0011123455789999999
Q ss_pred CeEEEEeCCceEEEEEcccccccceee-eeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEec
Q 047837 322 EKLVVVYGDHSLYVWDIHDVNEATRCC-VLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 322 ~~ll~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~ 400 (882)
+++++++.||+|++||+.+++...... .+ .+|...|++++|+ +++++|++|+.|++|++||+
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~----------------~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCK----------------YEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEE----------------ECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEET
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccc----------------cCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEEC
Confidence 999999999999999998876543221 12 2466777788888 89999999999999999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
.+++.+. .+.+|.+.|.+++|++++.
T Consensus 157 ~~~~~~~---------------------------------------------------~~~~h~~~V~~~~~~~~~~--- 182 (344)
T 4gqb_B 157 AQQVVLS---------------------------------------------------SYRAHAAQVTCVAASPHKD--- 182 (344)
T ss_dssp TTTEEEE---------------------------------------------------EECCCSSCEEEEEECSSCT---
T ss_pred CCCcEEE---------------------------------------------------EEcCcCCceEEEEecCCCC---
Confidence 9876543 3568999999999999875
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee--cCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCcccee
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID--DHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
.++++|+.|++|++||++++ +....+. .|...+.+++|+| ++++|++++.|++|++||+++++....
T Consensus 183 ---------~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 183 ---------SVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp ---------TEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred ---------Cceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 27899999999999999886 5555543 4566799999999 567889999999999999997765544
Q ss_pred eeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCC-EEEEEeCCCc
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS-YLVCSYSNKS 635 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~ 635 (882)
+ ..|...|++++|+|++ ++|++++.|++|++||+.+++++. +. +|.+.|++++|+|+++ +|++++.|++
T Consensus 253 ~------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 253 S------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp E------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred E------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence 3 2455799999999998 579999999999999999887654 44 8999999999999986 5779999999
Q ss_pred EEEEEccCCe
Q 047837 636 ICLYDFISGE 645 (882)
Q Consensus 636 i~iwd~~~~~ 645 (882)
|++|++.+..
T Consensus 324 v~~w~v~~~~ 333 (344)
T 4gqb_B 324 VVHHVVPTEP 333 (344)
T ss_dssp EEEEECCC--
T ss_pred EEEEECCCCC
Confidence 9999998754
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.5e-36 Score=313.80 Aligned_cols=287 Identities=17% Similarity=0.262 Sum_probs=239.0
Q ss_pred cCCCCCCcEEEeecCCC--eEEEEeCCceEEEEEccccccc--ceeeeeecCcceeeeecccCCCCCCCCCcceeeeccC
Q 047837 306 LTPTIPNAIACQFSTSE--KLVVVYGDHSLYVWDIHDVNEA--TRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCT 381 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~~--~ll~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~ 381 (882)
+.+|...+.+++|+|++ .+++++.|++|++|++...... .....+. +|...|.+++|+ +
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~----------------~h~~~v~~~~~s-~ 75 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----------------GHSHIVQDCTLT-A 75 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE----------------CCSSCEEEEEEC-T
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe----------------CCcccEEEEEEC-C
Confidence 34566677799999965 4677888999999998654321 1122333 466677777787 8
Q ss_pred CCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEee
Q 047837 382 GGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLD 461 (882)
Q Consensus 382 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 461 (882)
++.+|++++.|++|++||+.+++.+. .+.
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~---------------------------------------------------~~~ 104 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQ---------------------------------------------------RFV 104 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---------------------------------------------------EEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeE---------------------------------------------------EEc
Confidence 99999999999999999998876532 255
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccC------CCEE
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCN------GRKI 535 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l 535 (882)
+|...|.+++|+|++. ++++|+.|++|++||+.. ..+..+.+|...|.+++|+|. +..|
T Consensus 105 ~h~~~v~~~~~~~~~~-------------~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 105 GHKSDVMSVDIDKKAS-------------MIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp CCSSCEEEEEECTTSC-------------EEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEE
T ss_pred cCCCcEEEEEEcCCCC-------------EEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence 8999999999999988 999999999999999964 567788899999999999984 4589
Q ss_pred EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCc
Q 047837 536 LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDP 615 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v 615 (882)
++++.|+.|++||+.+...... ..+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+
T Consensus 170 ~s~~~d~~i~~wd~~~~~~~~~------~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v 240 (319)
T 3frx_A 170 ISAGNDKMVKAWNLNQFQIEAD------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---AQDEV 240 (319)
T ss_dssp EEEETTSCEEEEETTTTEEEEE------ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---CCSCE
T ss_pred EEEeCCCEEEEEECCcchhhee------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCcE
Confidence 9999999999999986543322 23456899999999999999999999999999999999998886 34689
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc--------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 616 MKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG--------HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 616 ~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.+++|+|++.+|++++.+ .+++|++..+..+..+.. |...+.+++|+|||++|++++.||.|++||+.+
T Consensus 241 ~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 241 FSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 999999999999998765 599999998887776643 456799999999999999999999999999864
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=319.33 Aligned_cols=220 Identities=20% Similarity=0.307 Sum_probs=168.3
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.+++|+ +++++|++++.|++|++||+........
T Consensus 104 h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~---------------------------------------- 142 (345)
T 3fm0_A 104 HENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYEC---------------------------------------- 142 (345)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEE----------------------------------------
T ss_pred CCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEE----------------------------------------
Confidence 55667777777 7899999999999999999876532110
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCCEEEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAAVTAVK 527 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~~~ 527 (882)
...+.+|...|.+++|+|++. +|++|+.|+.|++||..++. .....+.+|...|.+++
T Consensus 143 --------~~~~~~h~~~v~~~~~~p~~~-------------~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 143 --------VSVLNSHTQDVKHVVWHPSQE-------------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201 (345)
T ss_dssp --------EEEECCCCSCEEEEEECSSSS-------------CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred --------EEEecCcCCCeEEEEECCCCC-------------EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence 123557889999999999988 89999999999999998752 34568889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeee---------ccce-ecccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKIS---------RRHQ-QLASQGTVYDMDIDPTMEVVITVGQDKKINSFSI 597 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~ 597 (882)
|+|++++|++++.|++|++|+........... .... ...|...|++++|+|++..|++++.|+.|++|+.
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 99999999999999999999975332211100 0000 1125678999999999999999999999999998
Q ss_pred cCCc----eEEEE---EeccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEEccCCeEEEEE
Q 047837 598 AAGK----LIRSF---KQAKDFGDPMKVTVDPSG-SYLVCSYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 598 ~~~~----~~~~~---~~~~~~~~v~~~~~spdg-~~l~~~~~dg~i~iwd~~~~~~~~~~ 650 (882)
..+. ....+ ...+|...|++++|+|++ .+||+++.||+|++|++.+++.+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred CCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 7643 11111 113789999999999998 59999999999999999988766544
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.4e-36 Score=312.55 Aligned_cols=288 Identities=17% Similarity=0.334 Sum_probs=226.1
Q ss_pred ceEEEEEecCCCCCeEEEEEcCCC-CEEEEeecCCCCeEEEEECCC-----ceeeEEeeccccceeEEEECCCCCEEEEE
Q 047837 33 TQSHLMVSHRMPKPLCCVAMSRDG-RYVAAGESGPQPAVLVWDCAN-----LAFISELKGHLYGVECIAFSPDGEHLVTV 106 (882)
Q Consensus 33 ~~~~~l~~h~~~~~I~~va~spdg-~~la~g~~~~d~~I~vwd~~t-----~~~~~~l~~h~~~V~~lafspdg~~Las~ 106 (882)
.....|.+|. +.|.+++|+|++ ++||+|+. |++|++||+.+ +.++..+.+|...|.+++|+|||++|+++
T Consensus 8 ~l~~~l~gH~--~~V~~l~~~~~~~~~l~s~s~--D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 8 VLRGTLEGHN--GWVTSLATSAGQPNLLLSASR--DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp EEEEEECCCS--SCEEEEEECSSCTTEEEEEET--TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEEcccc--ceEEEEEccCCCccEEEEecC--CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 3446788999 899999999965 89999966 99999999864 45678899999999999999999999999
Q ss_pred c--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccc
Q 047837 107 G--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVN 183 (882)
Q Consensus 107 ~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 183 (882)
+ ++|+|||+.+++.+..+.+|. ..|.+++|+|++++|++++. +.|++||+..... ..+..|...
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~---------~~~~~h~~~-- 150 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL---------ATLLGHNDW-- 150 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSCEEEEEETTSCEEEEETTSCEE---------EEECCCSSC--
T ss_pred eCCCEEEEEECCCCCeeEEEccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---------EEEeccCCc--
Confidence 9 999999999999999999887 89999999999999999876 8999999864322 112222222
Q ss_pred ccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecC------CCEEE
Q 047837 184 LGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSAS------SKLIA 257 (882)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d------~~~l~ 257 (882)
+.+++|+|. +..|+
T Consensus 151 ------------------------------------------------------------v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 151 ------------------------------------------------------------VSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp ------------------------------------------------------------EEEEEECCC------CCEEE
T ss_pred ------------------------------------------------------------EEEEEEccCCCCCCCccEEE
Confidence 256677664 44677
Q ss_pred EEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEE
Q 047837 258 CACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWD 337 (882)
Q Consensus 258 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd 337 (882)
+++.|+.|++||+.+++..
T Consensus 171 s~~~d~~i~~wd~~~~~~~------------------------------------------------------------- 189 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIE------------------------------------------------------------- 189 (319)
T ss_dssp EEETTSCEEEEETTTTEEE-------------------------------------------------------------
T ss_pred EEeCCCEEEEEECCcchhh-------------------------------------------------------------
Confidence 7777777777776643221
Q ss_pred cccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccce
Q 047837 338 IHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLN 417 (882)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 417 (882)
..+. +|...|.+++|+ +++++|++++.||+|++||+.+++.+..
T Consensus 190 ----------~~~~----------------~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~~~~~~~~--------- 233 (319)
T 3frx_A 190 ----------ADFI----------------GHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLAAKKAMYT--------- 233 (319)
T ss_dssp ----------EEEC----------------CCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEE---------
T ss_pred ----------eeec----------------CCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEE---------
Confidence 1122 356667777887 8999999999999999999987665422
Q ss_pred eeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcC
Q 047837 418 IEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGR 497 (882)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 497 (882)
+ .+...|.+++|+|++. +++++..
T Consensus 234 ------------------------------------------~-~~~~~v~~~~~sp~~~-------------~la~~~~ 257 (319)
T 3frx_A 234 ------------------------------------------L-SAQDEVFSLAFSPNRY-------------WLAAATA 257 (319)
T ss_dssp ------------------------------------------E-ECCSCEEEEEECSSSS-------------EEEEEET
T ss_pred ------------------------------------------e-cCCCcEEEEEEcCCCC-------------EEEEEcC
Confidence 1 2345688899999887 7877765
Q ss_pred CCcEEEEEcCCCceeEEEee--------cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccC
Q 047837 498 DRTIHLYDVKRNFDLIESID--------DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVET 552 (882)
Q Consensus 498 dg~v~iwd~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~ 552 (882)
+ .+++|++... ..+..+. .|...+.+++|+|||++|++++.|+.|++||+.+.
T Consensus 258 ~-~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 T-GIKVFSLDPQ-YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp T-EEEEEEETTE-EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred C-CcEEEEeCcC-eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 5 5999999865 4444443 35677999999999999999999999999998753
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-35 Score=309.27 Aligned_cols=291 Identities=20% Similarity=0.403 Sum_probs=235.1
Q ss_pred CceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CE
Q 047837 32 STQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GY 109 (882)
Q Consensus 32 ~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~ 109 (882)
......+.+|. +.|++++|+|++++||+|+. |+.|+|||+.+++.+..+.+|...|.+++|+|++++|++++ +.
T Consensus 13 ~~~~~~~~gh~--~~v~~~~~s~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHT--KAVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCS--SCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEEEcccC--CcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 34566788998 89999999999999999965 88999999999999999999999999999999999999998 99
Q ss_pred EEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccc
Q 047837 110 IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQK 188 (882)
Q Consensus 110 i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 188 (882)
|++||+.+++++..+..|. ..|.+++|+|++++|++++. +.|++||+.+++.. ..+..|..+
T Consensus 89 i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~------- 151 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP------- 151 (312)
T ss_dssp EEEEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE--------EEECCCSSC-------
T ss_pred EEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE--------EEecCCCCc-------
Confidence 9999999999999999887 89999999999999999875 89999999876541 112222222
Q ss_pred cceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEee
Q 047837 189 ESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLF 268 (882)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vw 268 (882)
+.+++|+|++++|++++.||.|++|
T Consensus 152 -------------------------------------------------------v~~~~~~~~~~~l~~~~~d~~i~~w 176 (312)
T 4ery_A 152 -------------------------------------------------------VSAVHFNRDGSLIVSSSYDGLCRIW 176 (312)
T ss_dssp -------------------------------------------------------EEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -------------------------------------------------------EEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 3789999999999999999999999
Q ss_pred ecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceee
Q 047837 269 DIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCC 348 (882)
Q Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~ 348 (882)
|+.+++.+..+.
T Consensus 177 d~~~~~~~~~~~-------------------------------------------------------------------- 188 (312)
T 4ery_A 177 DTASGQCLKTLI-------------------------------------------------------------------- 188 (312)
T ss_dssp ETTTCCEEEEEC--------------------------------------------------------------------
T ss_pred ECCCCceeeEEe--------------------------------------------------------------------
Confidence 988654332210
Q ss_pred eeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEe
Q 047837 349 VLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVS 428 (882)
Q Consensus 349 ~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (882)
..+...+.+++|+ +++++|++++.||.|++||+.+++.+...
T Consensus 189 ------------------~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------- 230 (312)
T 4ery_A 189 ------------------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKCLKTY------------------- 230 (312)
T ss_dssp ------------------CSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEE-------------------
T ss_pred ------------------ccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEE-------------------
Confidence 0123455666776 78888999999999999998876654321
Q ss_pred eeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE--EEEEEe-cCCCCCccceeccCCceEEEEEcCCCcEEEEE
Q 047837 429 AGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI--LSLSFS-LSSKKDDVLEEVTDSHYFLASGGRDRTIHLYD 505 (882)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v--~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd 505 (882)
.+|...+ ....++ +++. ++++|+.||.|++||
T Consensus 231 --------------------------------~~~~~~~~~~~~~~~~~~~~-------------~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 231 --------------------------------TGHKNEKYCIFANFSVTGGK-------------WIVSGSEDNLVYIWN 265 (312)
T ss_dssp --------------------------------CSSCCSSSCCCEEEECSSSC-------------EEEECCTTSCEEEEE
T ss_pred --------------------------------EecCCceEEEEEEEEeCCCc-------------EEEEECCCCEEEEEE
Confidence 1121111 111222 2333 899999999999999
Q ss_pred cCCCceeEEEeecCCCCEEEEEEccCCCEEEEEe--CCCeEEEEeCc
Q 047837 506 VKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCS--ADRSLVVRDVV 550 (882)
Q Consensus 506 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~ 550 (882)
+.++ +.+..+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 266 ~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 266 LQTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TTTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9886 78889999999999999999999999987 69999999864
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.9e-36 Score=317.13 Aligned_cols=322 Identities=21% Similarity=0.312 Sum_probs=254.3
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceee--
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLV-- 121 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~-- 121 (882)
++|.+++|||||+++|++.. ++.+.+|+...........+|...|.+++|+|++++|++++ +.|++||+.+++..
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFP--PDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EECCEEEECSSSCEEECCCC--TTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC
T ss_pred CceeEEEECCCCCEEEeecC--CCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee
Confidence 68999999999999999854 55667777666555555567999999999999999999999 99999999987643
Q ss_pred -eeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecc
Q 047837 122 -MKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISAT 199 (882)
Q Consensus 122 -~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 199 (882)
..+....+...|.+++|+|++++|++++. +.|++||+.+++.... ..+..|.
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------~~~~~~~-------------------- 141 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK------AELTSSA-------------------- 141 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE------EEEECSS--------------------
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee------eecccCC--------------------
Confidence 33332234489999999999999998875 8999999976643100 0111111
Q ss_pred cccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccc
Q 047837 200 WTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTL 279 (882)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~ 279 (882)
..+.+++|+|++++|++++.||.|++||+.+++....
T Consensus 142 ------------------------------------------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~- 178 (337)
T 1gxr_A 142 ------------------------------------------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ- 178 (337)
T ss_dssp ------------------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-
T ss_pred ------------------------------------------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-
Confidence 2237889999999999999999999999876543211
Q ss_pred cccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeee
Q 047837 280 HYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWD 359 (882)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 359 (882)
+.
T Consensus 179 ----------------------------------------------------------------------~~-------- 180 (337)
T 1gxr_A 179 ----------------------------------------------------------------------FQ-------- 180 (337)
T ss_dssp ----------------------------------------------------------------------EC--------
T ss_pred ----------------------------------------------------------------------ee--------
Confidence 11
Q ss_pred ecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeee
Q 047837 360 IKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMET 439 (882)
Q Consensus 360 i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (882)
.|...|.+++|+ +++++|++++.||.|++||+.+++.+..
T Consensus 181 --------~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~------------------------------- 220 (337)
T 1gxr_A 181 --------GHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQ------------------------------- 220 (337)
T ss_dssp --------CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------
T ss_pred --------cccCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCceEee-------------------------------
Confidence 245566777777 7889999999999999999987654321
Q ss_pred eccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC
Q 047837 440 SVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH 519 (882)
Q Consensus 440 ~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h 519 (882)
..+...+.+++|+|+++ ++++++.++.|++||+.+. . ...+..|
T Consensus 221 ---------------------~~~~~~v~~~~~s~~~~-------------~l~~~~~~~~i~~~~~~~~-~-~~~~~~~ 264 (337)
T 1gxr_A 221 ---------------------HDFTSQIFSLGYCPTGE-------------WLAVGMESSNVEVLHVNKP-D-KYQLHLH 264 (337)
T ss_dssp ---------------------EECSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTSS-C-EEEECCC
T ss_pred ---------------------ecCCCceEEEEECCCCC-------------EEEEEcCCCcEEEEECCCC-C-eEEEcCC
Confidence 13566788899999887 8999999999999999876 3 3467789
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc
Q 047837 520 SAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 520 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 598 (882)
...|.+++|+|++++|++++.||.|++||+.+++.... ..+...+.+++|+|++++|++++.|+.|++||+.
T Consensus 265 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999999999999999999999999999987654422 2345789999999999999999999999999963
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-35 Score=311.23 Aligned_cols=146 Identities=15% Similarity=0.315 Sum_probs=120.3
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
++++++.|+.|++||.. ......+.+|...|.+++|+|++++|++++.|+.|++||+.......... .+...
T Consensus 186 ~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~------~~~~~ 257 (343)
T 2xzm_R 186 YFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF------DAGST 257 (343)
T ss_dssp EEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE------ECSSC
T ss_pred EEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee------cCCCc
Confidence 89999999999999943 36677888999999999999999999999999999999995443332221 12357
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEE--EEEe---------ccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIR--SFKQ---------AKDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~---------~~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
|.+++|+|++.+++++ .|+.|++||+.+++... .+.. .+|...+.+++|+|+|++|++|+.||.|++|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 9999999999887754 67889999998877554 3321 1577889999999999999999999999999
Q ss_pred EccCCe
Q 047837 640 DFISGE 645 (882)
Q Consensus 640 d~~~~~ 645 (882)
++++++
T Consensus 337 ~~~~g~ 342 (343)
T 2xzm_R 337 SFETSA 342 (343)
T ss_dssp EEEEEE
T ss_pred EEEccC
Confidence 998764
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.3e-36 Score=330.87 Aligned_cols=321 Identities=13% Similarity=0.173 Sum_probs=256.6
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK- 323 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~- 323 (882)
.+++|+|++++|++++.||.|++||+.+++....+. .........|+++++
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~ 111 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK----------------------------RADYTAVDTAKLQMRR 111 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC----------------------------SCCEEEEEEECSSSCE
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe----------------------------cCCceEEEEEecCCCE
Confidence 579999999999999999999999998876554332 111223457888986
Q ss_pred EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCC
Q 047837 324 LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQ 403 (882)
Q Consensus 324 ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~ 403 (882)
+++++.|+.|++||+.+++.. .. ...|...|.+++|+ +++++|++++.|++|++||+.++
T Consensus 112 l~~~~~dg~i~iwd~~~~~~~---~~----------------~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~ 171 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSNFNLQR---EI----------------DQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDG 171 (420)
T ss_dssp EEEEETTSCEEEECTTSCEEE---EE----------------TTSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCCEEEEeCCCccee---ee----------------cccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCC
Confidence 555677999999998765321 11 23467778888888 78999999999999999999876
Q ss_pred ceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccce
Q 047837 404 SELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLE 483 (882)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 483 (882)
+.+. .+.+|...|.+++|+|++.
T Consensus 172 ~~~~---------------------------------------------------~~~~h~~~v~~~~~~~~~~------ 194 (420)
T 3vl1_A 172 SNPR---------------------------------------------------TLIGHRATVTDIAIIDRGR------ 194 (420)
T ss_dssp CCCE---------------------------------------------------EEECCSSCEEEEEEETTTT------
T ss_pred cCce---------------------------------------------------EEcCCCCcEEEEEEcCCCC------
Confidence 5432 2457999999999999988
Q ss_pred eccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec---CCCCEEEEE---------------------EccCCCEEEEEe
Q 047837 484 EVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD---HSAAVTAVK---------------------FTCNGRKILSCS 539 (882)
Q Consensus 484 ~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~---h~~~v~~~~---------------------~s~~~~~l~s~~ 539 (882)
+|++++.|+.|++||+.++ +.+..+.. |...|.+++ |+|++++|++++
T Consensus 195 -------~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 195 -------NVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp -------EEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred -------EEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 9999999999999999887 66666664 444455554 578899999999
Q ss_pred CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEEccCCce-EEEEEeccCCCCcEE
Q 047837 540 ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFSIAAGKL-IRSFKQAKDFGDPMK 617 (882)
Q Consensus 540 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~ 617 (882)
.||.|++||+.+......+... |...|.+++|+|+++ +|++++.|+.|++||+++++. +..+. ..|...+.+
T Consensus 267 ~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~ 340 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQLPSK-----FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-INEGTPINN 340 (420)
T ss_dssp TTSCEEEEETTTCCEEEEECCT-----TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-ESTTSCEEE
T ss_pred CCCeEEEEECCCCceeEEcccc-----cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-ccCCCCceE
Confidence 9999999999877655554332 347899999999999 999999999999999998754 66666 135666777
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCC---------eEEEEEccCCCCeEEEEECCCCC---EEEEEeCCCeEEEEeCCC
Q 047837 618 VTVDPSGSYLVCSYSNKSICLYDFISG---------EMVAKAMGHGEVITGVTFLPDCK---HIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 618 ~~~spdg~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~s~d~~---~l~s~~~dg~i~vwd~~~ 685 (882)
+. .+++++|++++.|+.|++||+.+. .....+.+|...|.+++|+|+++ .|++++.+|.+.+|++++
T Consensus 341 ~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 341 VY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 75 467889999999999999998763 22234667899999999999999 888888999999999875
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-35 Score=318.16 Aligned_cols=317 Identities=21% Similarity=0.344 Sum_probs=242.6
Q ss_pred EEEEEECCCCceE----EEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecccc---------
Q 047837 23 VLVVYDVDSSTQS----HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLY--------- 89 (882)
Q Consensus 23 ~v~vwd~~~~~~~----~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~--------- 89 (882)
...+|+....+.. ....+|. ..|.|++|||||++||+|+ ++.++||++.+++.+..+.+|..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~fspdg~~la~g~---~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSLDHT--SVVCCVKFSNDGEYLATGC---NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEEECS--SCCCEEEECTTSSEEEEEC---BSCEEEEETTTCCEEEEECC------------
T ss_pred eEEEECCCCCcccCceeEEecCCC--CEEEEEEECCCCCEEEEEc---CCcEEEEEecCCCEEEEecCcccccccccccc
Confidence 4557776554322 1223687 8999999999999999984 56899999999999988876643
Q ss_pred ---------ceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEE
Q 047837 90 ---------GVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWT 157 (882)
Q Consensus 90 ---------~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd 157 (882)
.|.+++|+|||++||+++ ++|+|||+.+++.+..+.+|. ..|.+++|+|++++|++++. +.|++||
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC--CCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 399999999999999998 999999999999999999887 89999999999999999875 8999999
Q ss_pred cccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeee
Q 047837 158 IGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTK 237 (882)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~ 237 (882)
+.+++.... +. +
T Consensus 194 ~~~~~~~~~--------~~-~----------------------------------------------------------- 205 (393)
T 1erj_A 194 LRTGQCSLT--------LS-I----------------------------------------------------------- 205 (393)
T ss_dssp TTTTEEEEE--------EE-C-----------------------------------------------------------
T ss_pred CCCCeeEEE--------EE-c-----------------------------------------------------------
Confidence 987654100 00 0
Q ss_pred EeeceeeeeEEEec-CCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEE
Q 047837 238 SVDLKVKNGFALSA-SSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIAC 316 (882)
Q Consensus 238 ~~~~~~~~~~~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (882)
...+.+++|+| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 206 ---~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~------------------------------------ 246 (393)
T 1erj_A 206 ---EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD------------------------------------ 246 (393)
T ss_dssp ---SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------------------------
T ss_pred ---CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeec------------------------------------
Confidence 01126789999 89999999999999999988765433221
Q ss_pred eecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEE
Q 047837 317 QFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIR 396 (882)
Q Consensus 317 ~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~ 396 (882)
... .. ..+|...|.+++|+ +++++|++++.||+|+
T Consensus 247 ---------------------~~~-------~~----------------~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 247 ---------------------SEN-------ES----------------GTGHKDSVYSVVFT-RDGQSVVSGSLDRSVK 281 (393)
T ss_dssp --------------------------------------------------CCCSSCEEEEEEC-TTSSEEEEEETTSEEE
T ss_pred ---------------------ccc-------cC----------------CCCCCCCEEEEEEC-CCCCEEEEEeCCCEEE
Confidence 000 00 12366677778887 7899999999999999
Q ss_pred EEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCC
Q 047837 397 LWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSS 476 (882)
Q Consensus 397 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~ 476 (882)
+||+............ ........+.+|...|.+++|++++
T Consensus 282 ~wd~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~ 322 (393)
T 1erj_A 282 LWNLQNANNKSDSKTP---------------------------------------NSGTCEVTYIGHKDFVLSVATTQND 322 (393)
T ss_dssp EEEC------------------------------------------------------CEEEEEECCSSCEEEEEECGGG
T ss_pred EEECCCCCCcccccCC---------------------------------------CCCcceEEEecccCcEEEEEECCCC
Confidence 9999765432110000 0001123456899999999999998
Q ss_pred CCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc------CCCEEEEEeCCCeEEEEeCc
Q 047837 477 KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC------NGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~i~vwd~~ 550 (882)
. +|++|+.|+.|++||+.++ ..+..+.+|...|.+++|++ ++++|++++.|++|++|++.
T Consensus 323 ~-------------~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 323 E-------------YILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp C-------------EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred C-------------EEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 8 9999999999999999887 67888999999999999986 68899999999999999986
Q ss_pred c
Q 047837 551 E 551 (882)
Q Consensus 551 ~ 551 (882)
.
T Consensus 389 ~ 389 (393)
T 1erj_A 389 K 389 (393)
T ss_dssp E
T ss_pred c
Confidence 3
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-36 Score=329.87 Aligned_cols=352 Identities=13% Similarity=0.120 Sum_probs=273.8
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeee
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMK 123 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~ 123 (882)
.+++++|+|+|++||+|+. |+.|++||+.+++....+..| ..+...+|+|++++||+++ +.|+|||+.+++.+..
T Consensus 58 ~~~~~~~s~~g~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARL--DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CCTTCEEEEEETTEEEEEE--TTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceeeeecCCeEEEEEc--CCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence 3558999999999999976 889999999999988888777 4556668999999999998 9999999999999888
Q ss_pred eecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeeccccc
Q 047837 124 LKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTD 202 (882)
Q Consensus 124 ~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 202 (882)
+..|. ..|.+++|+|++++|++++. +.|++||+.+++. ...+..|..++
T Consensus 135 ~~~h~--~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------~~~~~~h~~~v-------------------- 184 (420)
T 3vl1_A 135 DQAHV--SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--------PRTLIGHRATV-------------------- 184 (420)
T ss_dssp TTSSS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--------CEEEECCSSCE--------------------
T ss_pred ccccc--CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--------ceEEcCCCCcE--------------------
Confidence 77776 89999999999999999886 8999999987655 12233343333
Q ss_pred CCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceeccccccc
Q 047837 203 NGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYS 282 (882)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 282 (882)
.+++|+|++++|++++.||.|++||+.+++.+..+...
T Consensus 185 ------------------------------------------~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 185 ------------------------------------------TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp ------------------------------------------EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred ------------------------------------------EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 88999999999999999999999999988776655311
Q ss_pred CcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecc
Q 047837 283 EAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKN 362 (882)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~ 362 (882)
. .+...+.+++|.+++...
T Consensus 223 ~------------------------~~~~~v~~~~~~~~~~~~------------------------------------- 241 (420)
T 3vl1_A 223 E------------------------NPHDGVNSIALFVGTDRQ------------------------------------- 241 (420)
T ss_dssp T------------------------BTTCCEEEEEEEECCCSS-------------------------------------
T ss_pred C------------------------CCCCCccEEEEecCCcce-------------------------------------
Confidence 0 112223344443332100
Q ss_pred cCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeecc
Q 047837 363 LGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVS 442 (882)
Q Consensus 363 ~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (882)
....|...+.+++|+ +++++|++++.||.|++||+.+++....
T Consensus 242 --~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------------------- 284 (420)
T 3vl1_A 242 --LHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVFSKEQTIQ---------------------------------- 284 (420)
T ss_dssp --CGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETTTCCEEEE----------------------------------
T ss_pred --eeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECCCCceeEE----------------------------------
Confidence 012256678888888 8999999999999999999987664322
Q ss_pred ccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec-CCC
Q 047837 443 TQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD-HSA 521 (882)
Q Consensus 443 ~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-h~~ 521 (882)
....|...|.+++|+|++. .+|++|+.||.|++||+.++..++..+.. |..
T Consensus 285 ----------------~~~~~~~~v~~~~~~~~~~------------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 285 ----------------LPSKFTCSCNSLTVDGNNA------------NYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp ----------------ECCTTSSCEEEEEECSSCT------------TEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred ----------------cccccCCCceeEEEeCCCC------------CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 1235778899999998875 27999999999999999987555666666 677
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeee---ccceecccCCceEEEEEecCCC---EEEEEeCCCcEEEE
Q 047837 522 AVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKIS---RRHQQLASQGTVYDMDIDPTME---VVITVGQDKKINSF 595 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~---~l~~~~~d~~v~iw 595 (882)
.|.++.+ +++++|++++.|+.|++|++.......... .......+...|.+++|+|+++ .+++++.+|.+.+|
T Consensus 337 ~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 337 PINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp CEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred CceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 7888855 578899999999999999998643332221 1222345667999999999999 78888899999999
Q ss_pred EccC
Q 047837 596 SIAA 599 (882)
Q Consensus 596 d~~~ 599 (882)
++..
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9864
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=310.68 Aligned_cols=297 Identities=18% Similarity=0.243 Sum_probs=224.3
Q ss_pred CCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 308 PTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
.+...+.+++|+++ .+++++.|+.|++||+..+... ....+. ...|...|.+++|+ +++++|+
T Consensus 12 ~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~-~~~~~~--------------~~~h~~~v~~v~~s-p~~~~la 74 (330)
T 2hes_X 12 LYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFT-LIDVLD--------------ETAHKKAIRSVAWR-PHTSLLA 74 (330)
T ss_dssp CCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCE-EEEEEC--------------TTCCCSCEEEEEEC-TTSSEEE
T ss_pred cCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeE-EEEEEe--------------cCCccCCEEEEEEC-CCCCEEE
Confidence 45666779999998 7778888999999999764211 111110 12377788888888 7899999
Q ss_pred EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 388 TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 388 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
+++.|++|++||+........ .. .....+.+|...|
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~------------------------------------~~--------~~~~~~~~h~~~V 110 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTF------------------------------------EM--------DLLAIIEGHENEV 110 (330)
T ss_dssp EEETTSCEEEEEC-------C------------------------------------CC--------EEEEEEC----CE
T ss_pred EEeCCCcEEEEEcccCcCccc------------------------------------cc--------eeEEEEcCCCCcE
Confidence 999999999999864221000 00 0012356899999
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC---ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN---FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
.+++|+|+++ +|++|+.|++|++||+... .+.+..+.+|...|.+++|+|++.+|++++.|++|
T Consensus 111 ~~v~~sp~g~-------------~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 177 (330)
T 2hes_X 111 KGVAWSNDGY-------------YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV 177 (330)
T ss_dssp EEEEECTTSC-------------EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred EEEEECCCCC-------------EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 9999999988 9999999999999999532 25677889999999999999999999999999999
Q ss_pred EEEeCccCc-cceeeeccceecccCCceEEEEEecC--CCEEEEEeCCCcEEEEEccCC--------ceEEEEEeccCCC
Q 047837 545 VVRDVVETN-SAYKISRRHQQLASQGTVYDMDIDPT--MEVVITVGQDKKINSFSIAAG--------KLIRSFKQAKDFG 613 (882)
Q Consensus 545 ~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~--------~~~~~~~~~~~~~ 613 (882)
++||..... .... ...+|.+.|.+++|+|+ +.+|++++.|++|++||+..+ .+...+. ..|..
T Consensus 178 ~iW~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~ 251 (330)
T 2hes_X 178 RIWKDYDDDWECVA-----VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP-DVHKR 251 (330)
T ss_dssp EEEEEETTEEEEEE-----EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC-SCCSS
T ss_pred EEEECCCCCeeEEE-----EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc-ccccc
Confidence 999987542 1112 22345689999999998 779999999999999999765 2333333 23888
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEEccCCe--EEEE-EccCCC-CeEEEEECC--CCCEEEEEeCCCeEEEEeCCC
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYDFISGE--MVAK-AMGHGE-VITGVTFLP--DCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~h~~-~v~~l~~s~--d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.|.+++|++++ +|++++.||.|+|||..+++ .+.. +.+|.. .|.+++|+| ++++|++++.||.|++||+..
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999765 88999999999999998874 3433 357887 899999999 789999999999999999864
No 45
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=325.85 Aligned_cols=317 Identities=19% Similarity=0.308 Sum_probs=253.9
Q ss_pred CCCccccCCCCCeEEEe-eceEEEEEEC----CCCc------eEEEEEe----------cCCCCCeEEEEEcCCCCEEEE
Q 047837 3 PNHNIKKPDSSSKCAYV-AGCVLVVYDV----DSST------QSHLMVS----------HRMPKPLCCVAMSRDGRYVAA 61 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~-~~~~v~vwd~----~~~~------~~~~l~~----------h~~~~~I~~va~spdg~~la~ 61 (882)
...++|+|++...++.. .++.|.+||+ .+++ ....+.. |. +.|++++|+|++++||+
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT--NQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C--BCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCC--CceEEEEEcCCCCEEEE
Confidence 35689999987445544 4689999999 8888 4555544 45 79999999999999999
Q ss_pred eecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccc-------
Q 047837 62 GESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSA------- 132 (882)
Q Consensus 62 g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~------- 132 (882)
|+. |+.|++|| .+++.+..+.+|...|.+++|+|++++|++++ +.|++||+.+++.+..+..+. ..
T Consensus 126 ~~~--dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~ 200 (425)
T 1r5m_A 126 GVE--NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE--TGGSSINAE 200 (425)
T ss_dssp EET--TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred EeC--CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc--cCccceeec
Confidence 965 88999999 78889999999999999999999999999998 999999999999999888775 44
Q ss_pred --------eeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCC
Q 047837 133 --------ITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNG 204 (882)
Q Consensus 133 --------v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 204 (882)
+.+++|++++.+++.+.++.|++||+.++.. ...+..|..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--------~~~~~~~~~~----------------------- 249 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP--------TGKLIGHHGP----------------------- 249 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC--------SEEECCCSSC-----------------------
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce--------eeeeccCCCc-----------------------
Confidence 9999999997766655668999999987654 1112222222
Q ss_pred cccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCc
Q 047837 205 VVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEA 284 (882)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~ 284 (882)
+.+++|+|++++|++++.||.|++||+.+++....
T Consensus 250 ---------------------------------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------ 284 (425)
T 1r5m_A 250 ---------------------------------------ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC------ 284 (425)
T ss_dssp ---------------------------------------EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE------
T ss_pred ---------------------------------------eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE------
Confidence 27899999999999999999999999876433211
Q ss_pred ccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccC
Q 047837 285 KKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLG 364 (882)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 364 (882)
+.
T Consensus 285 -----------------------------------------------------------------~~------------- 286 (425)
T 1r5m_A 285 -----------------------------------------------------------------FY------------- 286 (425)
T ss_dssp -----------------------------------------------------------------EC-------------
T ss_pred -----------------------------------------------------------------ec-------------
Confidence 11
Q ss_pred CCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeecccc
Q 047837 365 CENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQ 444 (882)
Q Consensus 365 ~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (882)
.|...|.+++|+ +++ .+++++.||.|++||+.+++.+.
T Consensus 287 ---~~~~~i~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~------------------------------------- 324 (425)
T 1r5m_A 287 ---GHSQSIVSASWV-GDD-KVISCSMDGSVRLWSLKQNTLLA------------------------------------- 324 (425)
T ss_dssp ---CCSSCEEEEEEE-TTT-EEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred ---CCCccEEEEEEC-CCC-EEEEEeCCCcEEEEECCCCcEeE-------------------------------------
Confidence 245566677777 666 89999999999999998765432
Q ss_pred CeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce-------------
Q 047837 445 GYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD------------- 511 (882)
Q Consensus 445 ~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~------------- 511 (882)
.+..|...|.+++|+|++. +|++++.||.|++||+.+. .
T Consensus 325 --------------~~~~~~~~i~~~~~s~~~~-------------~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 325 --------------LSIVDGVPIFAGRISQDGQ-------------KYAVAFMDGQVNVYDLKKL-NSKSRSLYGNRDGI 376 (425)
T ss_dssp --------------EEECTTCCEEEEEECTTSS-------------EEEEEETTSCEEEEECHHH-HC------------
T ss_pred --------------ecccCCccEEEEEEcCCCC-------------EEEEEECCCeEEEEECCCC-ccceeeeecccccc
Confidence 2446788899999999988 9999999999999999875 4
Q ss_pred -------eEEEeecCCC--CEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 512 -------LIESIDDHSA--AVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 512 -------~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
.+..+..|.. .|.+++|+|++++|++++.||.|++||++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 6788888976 99999999999999999999999999985
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-37 Score=336.66 Aligned_cols=351 Identities=13% Similarity=0.166 Sum_probs=263.1
Q ss_pred cccceeEEEECCCCC-EEEEE----------c--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-Cc
Q 047837 87 HLYGVECIAFSPDGE-HLVTV----------G--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KH 152 (882)
Q Consensus 87 h~~~V~~lafspdg~-~Las~----------~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~ 152 (882)
+...|.+++|+|||+ +|+++ + +.|+|||+.+++....+....+...|.+++|+|++++|++++. +.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 345689999999997 99998 5 8999999998863322221123389999999999999999875 89
Q ss_pred EEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccC
Q 047837 153 LKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSG 232 (882)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~ 232 (882)
|++|++...... ......+..|..++
T Consensus 91 v~vw~~~~~~~~----~~~~~~~~~h~~~v-------------------------------------------------- 116 (416)
T 2pm9_A 91 LELYSTNEANNA----INSMARFSNHSSSV-------------------------------------------------- 116 (416)
T ss_dssp EEEECCSSTTSC----CCEEEECCCSSSCC--------------------------------------------------
T ss_pred EEEeeccccccc----ccchhhccCCccce--------------------------------------------------
Confidence 999999762110 00011222333333
Q ss_pred ceeeeEeeceeeeeEEEecC-CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCC
Q 047837 233 LSVTKSVDLKVKNGFALSAS-SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIP 311 (882)
Q Consensus 233 ~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (882)
.+++|+|+ +.+|++++.||.|++||+.+++......
T Consensus 117 ------------~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------- 153 (416)
T 2pm9_A 117 ------------KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------------------------- 153 (416)
T ss_dssp ------------CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------------------------------
T ss_pred ------------EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------------------------------
Confidence 88999998 8999999999999999998754210000
Q ss_pred CcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC
Q 047837 312 NAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA 391 (882)
Q Consensus 312 ~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~ 391 (882)
.... ......|...|.+++|++..+.+|++++.
T Consensus 154 -------------------------------~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 186 (416)
T 2pm9_A 154 -------------------------------TPLT----------------PGQSMSSVDEVISLAWNQSLAHVFASAGS 186 (416)
T ss_dssp -------------------------------CCBC----------------CCCSCCSSCCCCEEEECSSCTTEEEEESS
T ss_pred -------------------------------cccc----------------cccccCCCCCeeEEEeCCCCCcEEEEEcC
Confidence 0000 00013467778888888433889999999
Q ss_pred CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEE
Q 047837 392 DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLS 471 (882)
Q Consensus 392 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~ 471 (882)
||.|++||+.+++.+....... ...+|...|.+++
T Consensus 187 dg~v~iwd~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~v~~~~ 221 (416)
T 2pm9_A 187 SNFASIWDLKAKKEVIHLSYTS---------------------------------------------PNSGIKQQLSVVE 221 (416)
T ss_dssp SSCEEEEETTTTEEEEEECCCC---------------------------------------------CSSCCCCCEEEEE
T ss_pred CCCEEEEECCCCCcceEEeccc---------------------------------------------cccccCCceEEEE
Confidence 9999999998876543321100 0124578899999
Q ss_pred EecCCCCCccceeccCCceEEEEEcCCC---cEEEEEcCCCceeEEEee-cCCCCEEEEEEcc-CCCEEEEEeCCCeEEE
Q 047837 472 FSLSSKKDDVLEEVTDSHYFLASGGRDR---TIHLYDVKRNFDLIESID-DHSAAVTAVKFTC-NGRKILSCSADRSLVV 546 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~-~~~~l~s~~~dg~i~v 546 (882)
|+|++. .++++++.|+ .|++||+++.......+. +|...|.+++|+| ++++|++++.|+.|++
T Consensus 222 ~~~~~~------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 222 WHPKNS------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp ECSSCT------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred ECCCCC------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 999863 2899999998 999999998656677777 8999999999999 9999999999999999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCceEEEEEe-----------------
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKLIRSFKQ----------------- 608 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~----------------- 608 (882)
||+.+++....+. .|...|.+++|+|++ .+|++++.|+.|++||+.+++.......
T Consensus 290 wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 290 WNPESAEQLSQFP------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp ECSSSCCEEEEEE------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred eeCCCCccceeec------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence 9998765544332 345789999999999 8999999999999999987654322110
Q ss_pred ----------------ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 047837 609 ----------------AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 609 ----------------~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~ 644 (882)
..+...+.+++|+|||++||+++.|+.|+||++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 015667889999999999999999999999999764
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-35 Score=308.40 Aligned_cols=305 Identities=15% Similarity=0.245 Sum_probs=218.4
Q ss_pred CCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc--eeeEEe-ec-cccceeEEEECCCCCEEEE
Q 047837 30 DSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL--AFISEL-KG-HLYGVECIAFSPDGEHLVT 105 (882)
Q Consensus 30 ~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~--~~~~~l-~~-h~~~V~~lafspdg~~Las 105 (882)
.+.+.+..+.+|. +.|.+++|+|+ +||+|+. |++|+|||+.++ +.+..+ .+ |...|.+++|+|++++||+
T Consensus 2 ~~~~~~~~~~~h~--~~v~~~~~s~~--~las~~~--D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 2 ASINLIKSLKLYK--EKIWSFDFSQG--ILATGST--DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp -CCEEEEEEECCS--SCEEEEEEETT--EEEEEES--SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred cccccceeeccCC--CceeeeccCCC--EEEEEcC--CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEE
Confidence 3456778889999 89999999998 9999965 899999999875 556666 45 9999999999999999999
Q ss_pred Ec--CEEEEEEcCc-------ceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccce
Q 047837 106 VG--GYIYLWNWRS-------AMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESL 175 (882)
Q Consensus 106 ~~--~~i~iWd~~~-------g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (882)
++ ++|+|||+.. .+++..+.+|. ..|.+++|+|++++|++++. +.|++||+...... ......+
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~----~~~~~~~ 149 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE----YECISVL 149 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC----CEEEEEE
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC----eEEEEEe
Confidence 98 9999999853 35667777776 89999999999999999985 89999998532110 0000112
Q ss_pred eecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCE
Q 047837 176 TLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKL 255 (882)
Q Consensus 176 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 255 (882)
..|.. .+.+++|+|++.+
T Consensus 150 ~~h~~--------------------------------------------------------------~v~~v~~~p~~~~ 167 (330)
T 2hes_X 150 QEHSQ--------------------------------------------------------------DVKHVIWHPSEAL 167 (330)
T ss_dssp CCCSS--------------------------------------------------------------CEEEEEECSSSSE
T ss_pred ccCCC--------------------------------------------------------------ceEEEEECCCCCE
Confidence 22222 2388999999999
Q ss_pred EEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEE
Q 047837 256 IACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYV 335 (882)
Q Consensus 256 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~i 335 (882)
|++++.|++|++||..++..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~------------------------------------------------------------ 187 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDW------------------------------------------------------------ 187 (330)
T ss_dssp EEEEETTSCEEEEEEETTEE------------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCCe------------------------------------------------------------
Confidence 99999999999999764310
Q ss_pred EEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC--CcEEEEeeCCCcEEEEecCCCceeeecccCC
Q 047837 336 WDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG--GVSFSTCSADGTIRLWDLALQSELSKDVLGH 413 (882)
Q Consensus 336 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 413 (882)
.....+.+ |...|.+++|+ ++ +.+|++++.|++|++||+..+.....
T Consensus 188 ---------~~~~~~~~----------------h~~~v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~----- 236 (330)
T 2hes_X 188 ---------ECVAVLNG----------------HEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ----- 236 (330)
T ss_dssp ---------EEEEEECC----------------CSSCEEEEEEC-CSSSSCEEEEEETTSCEEEEEEEEECTTSC-----
T ss_pred ---------eEEEEccC----------------CCCcEEEEEec-CCCCeeEEEEEeCCCeEEEEEecCCCcccc-----
Confidence 00112333 34445555565 44 56889999999999999864321000
Q ss_pred ccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEee-eccceEEEEEEecCCCCCccceeccCCceEE
Q 047837 414 ESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLD-AHDAEILSLSFSLSSKKDDVLEEVTDSHYFL 492 (882)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l 492 (882)
...... ..+. .|...|.+++|++++ +|
T Consensus 237 ------------------------------~~~~~~--------~~~~~~h~~~v~~v~~s~~~--------------~l 264 (330)
T 2hes_X 237 ------------------------------QEWVCE--------AILPDVHKRQVYNVAWGFNG--------------LI 264 (330)
T ss_dssp ------------------------------EEEEEE--------EECCSCCSSCEEEEEECTTS--------------CE
T ss_pred ------------------------------ceeEEe--------eecccccccceEEEEEcCCC--------------EE
Confidence 000000 0122 388899999999654 59
Q ss_pred EEEcCCCcEEEEEcCCCc-eeE-EEeecCCC-CEEEEEEcc--CCCEEEEEeCCCeEEEEeCcc
Q 047837 493 ASGGRDRTIHLYDVKRNF-DLI-ESIDDHSA-AVTAVKFTC--NGRKILSCSADRSLVVRDVVE 551 (882)
Q Consensus 493 ~~g~~dg~v~iwd~~~~~-~~~-~~~~~h~~-~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~ 551 (882)
++++.||.|++||..++. ... ....+|.. .|.+++|+| ++++|++++.||+|++||++.
T Consensus 265 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 265 ASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999999999987652 222 33467887 899999999 789999999999999999863
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=331.54 Aligned_cols=387 Identities=12% Similarity=0.133 Sum_probs=280.0
Q ss_pred ccccCCCCCeEEEeeceEEEEEECCCCceEEEE-EecCCCCCeEEEEEcC-CCCEEEEeecCCCCeEEEEECCC---ce-
Q 047837 6 NIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLM-VSHRMPKPLCCVAMSR-DGRYVAAGESGPQPAVLVWDCAN---LA- 79 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l-~~h~~~~~I~~va~sp-dg~~la~g~~~~d~~I~vwd~~t---~~- 79 (882)
..|.|++. .++... .|+. +++.+..+ .+|. +.|++++|+| ++++||+|+. |++|+|||+.+ +.
T Consensus 33 ~~f~~~~~-~~~~~~-----~w~~-~g~~~~~~~~~h~--~~V~~~~~s~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 33 KEFGPIQE-IVRSPN-----MGNL-RGKLIATLMENEP--NSITSSAVSPGETPYLITGSD--QGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGGCCCCC-CCCCCC-----GGGC-CCCEEEEECTTTT--SCEEEEEEECSSSCEEEEEET--TSEEEEEEHHHHHTTCC
T ss_pred hhcCCccc-cccccc-----cccc-cceEEeeeccCCC--CceEEEEECCCCCCEEEEecC--CceEEEeECcccccCcc
Confidence 34677765 222221 4884 46777777 7888 8999999999 9999999965 99999999977 43
Q ss_pred --eeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcC---cceeeeeeecCCcccceeEEEEccCCCEEEEECCCc
Q 047837 80 --FISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWR---SAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKH 152 (882)
Q Consensus 80 --~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~---~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~ 152 (882)
....+ +|...|.+++|+|++++|++++ +.|++||+. +++.+..+..+ .+..+.|+|++ ..+.
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----~i~~~~~~~~~------~~~~ 170 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE----CIRKINLKNFG------KNEY 170 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE----EEEEEEGGGGS------SCCC
T ss_pred cceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc----eeEEEEccCcc------cccC
Confidence 23333 4999999999999999999999 999999995 66666655543 57777777653 0000
Q ss_pred EEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccC
Q 047837 153 LKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSG 232 (882)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~ 232 (882)
T Consensus 171 -------------------------------------------------------------------------------- 170 (437)
T 3gre_A 171 -------------------------------------------------------------------------------- 170 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeEeeceeeeeE--EEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCC
Q 047837 233 LSVTKSVDLKVKNGF--ALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTI 310 (882)
Q Consensus 233 ~~~~~~~~~~~~~~~--~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (882)
+.++ .+++++.+|++++.||.|++||+.+++.+..+
T Consensus 171 -----------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------------- 208 (437)
T 3gre_A 171 -----------AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII------------------------------- 208 (437)
T ss_dssp -----------EEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE-------------------------------
T ss_pred -----------ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE-------------------------------
Confidence 0222 36688889999999999999998765443221
Q ss_pred CCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee
Q 047837 311 PNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS 390 (882)
Q Consensus 311 ~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~ 390 (882)
.+ ..|...|++++|+ +++.+|++++
T Consensus 209 ----------------------------------------~~--------------~~h~~~v~~~~~s-~~~~~l~s~~ 233 (437)
T 3gre_A 209 ----------------------------------------EN--------------SPRHGAVSSICID-EECCVLILGT 233 (437)
T ss_dssp ----------------------------------------EC--------------CGGGCCEEEEEEC-TTSCEEEEEE
T ss_pred ----------------------------------------cc--------------CCCCCceEEEEEC-CCCCEEEEEc
Confidence 11 0145567778887 7899999999
Q ss_pred CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEE
Q 047837 391 ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSL 470 (882)
Q Consensus 391 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~ 470 (882)
.||+|++||+.+++.+... ...|...|.++
T Consensus 234 ~dg~i~iwd~~~~~~~~~~--------------------------------------------------~~~~~~~v~~~ 263 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSW--------------------------------------------------SFGDHAPITHV 263 (437)
T ss_dssp TTSCEEEEETTTTEEEEEE--------------------------------------------------BCTTCEEEEEE
T ss_pred CCCeEEEEEcCCccEEEEE--------------------------------------------------ecCCCCceEEE
Confidence 9999999999876654321 11466688888
Q ss_pred EEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 471 SFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
+|+|... +++.+|++|+.|+.|++||+.++ ..+..+.+|...+..+.|+|+++.+ .+..
T Consensus 264 ~~~~~~s---------~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~------- 322 (437)
T 3gre_A 264 EVCQFYG---------KNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGL----EELN------- 322 (437)
T ss_dssp EECTTTC---------TTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSG----GGCC-------
T ss_pred EeccccC---------CCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCCccceeccccccc----ccce-------
Confidence 7776522 33459999999999999999887 7888999999999999999987655 1110
Q ss_pred cCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc-CCCCcEEEEECCCCCEEEE
Q 047837 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK-DFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~ 629 (882)
+ .. ..|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+. .........++++..+++.
T Consensus 323 -------~-~~---~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (437)
T 3gre_A 323 -------F-CG---IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLR 390 (437)
T ss_dssp -------C-CC---CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEE
T ss_pred -------e-cc---cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEE
Confidence 0 00 1244689999999 78999999999999999999999998887221 2334555666766666555
Q ss_pred EeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEe
Q 047837 630 SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD--CKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~s~~~dg~i~vwd 682 (882)
. |+...+..+.....|...|++++|+++ +.+|++++.||.|+||+
T Consensus 391 ~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 K--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp E--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred e--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4 333444555666779999999999998 78999999999999995
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.1e-35 Score=309.24 Aligned_cols=284 Identities=19% Similarity=0.225 Sum_probs=225.5
Q ss_pred CCCCCcEEEee-----cC-CCe-EEEEeCCceEEEEEcccccccc----eeeeeecCcceeeeecccCCCCCCCCCccee
Q 047837 308 PTIPNAIACQF-----ST-SEK-LVVVYGDHSLYVWDIHDVNEAT----RCCVLVSHSACIWDIKNLGCENMHDPSVSCV 376 (882)
Q Consensus 308 ~~~~~~~~~~~-----s~-~~~-ll~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~ 376 (882)
+|...+.+++| ++ +++ +++++.|++|++||+...+... .... +.+|...|.++
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~----------------l~~h~~~V~~~ 82 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA----------------LTGHNHFVSDL 82 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEE----------------ECCCSSCEEEE
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccch----------------hccCCCceEEE
Confidence 45556678888 66 676 5667779999999997543211 1112 24577778888
Q ss_pred eeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCC
Q 047837 377 ARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGS 456 (882)
Q Consensus 377 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 456 (882)
+|+ +++.++++++.|++|++||+.+++.+.
T Consensus 83 ~~~-~~~~~l~s~s~D~~v~lwd~~~~~~~~------------------------------------------------- 112 (343)
T 2xzm_R 83 ALS-QENCFAISSSWDKTLRLWDLRTGTTYK------------------------------------------------- 112 (343)
T ss_dssp EEC-SSTTEEEEEETTSEEEEEETTSSCEEE-------------------------------------------------
T ss_pred EEC-CCCCEEEEEcCCCcEEEEECCCCcEEE-------------------------------------------------
Confidence 888 789999999999999999998765432
Q ss_pred EEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee---cCCCCEEEEEEccCC-
Q 047837 457 TLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID---DHSAAVTAVKFTCNG- 532 (882)
Q Consensus 457 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~---~h~~~v~~~~~s~~~- 532 (882)
.+.+|...|.+++|+|+++ +|++++.|+.|++||+... ...... +|...|.+++|+|++
T Consensus 113 --~~~~h~~~v~~v~~sp~~~-------------~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 113 --RFVGHQSEVYSVAFSPDNR-------------QILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp --EEECCCSCEEEEEECSSTT-------------EEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEEEEEECCCCC
T ss_pred --EEcCCCCcEEEEEECCCCC-------------EEEEEcCCCEEEEEeccCC--ceeeeecccCCCceeeeeeeccccc
Confidence 2557999999999999998 9999999999999999743 222333 688999999999987
Q ss_pred ---------CEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC-Cce
Q 047837 533 ---------RKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA-GKL 602 (882)
Q Consensus 533 ---------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~ 602 (882)
.+|++++.|+.|++||.. .. ... ....|...|.+++|+|++++|++++.|+.|++||+.. ...
T Consensus 176 ~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~-~~~-----~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 176 SANKVQPFAPYFASVGWDGRLKVWNTN-FQ-IRY-----TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp SCSCCCSSCCEEEEEETTSEEEEEETT-TE-EEE-----EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred cccccCCCCCEEEEEcCCCEEEEEcCC-Cc-eeE-----EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 799999999999999953 22 211 2234567999999999999999999999999999954 444
Q ss_pred EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEE--EEc-----------cCCCCeEEEEECCCCCEE
Q 047837 603 IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVA--KAM-----------GHGEVITGVTFLPDCKHI 669 (882)
Q Consensus 603 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~l~~s~d~~~l 669 (882)
...+. +...|.+++|+|++++++++ .|+.|++||+.+++... .+. +|...|.+++|+|+|++|
T Consensus 249 ~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 249 QREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp SEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred ceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 44443 45679999999999988766 57789999998876433 443 688899999999999999
Q ss_pred EEEeCCCeEEEEeCCC
Q 047837 670 VSVGGDGLQRVKEKYG 685 (882)
Q Consensus 670 ~s~~~dg~i~vwd~~~ 685 (882)
++++.||.|++|++.+
T Consensus 325 ~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFET 340 (343)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEecCCceEEEEEEEc
Confidence 9999999999999864
No 50
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4.9e-34 Score=348.66 Aligned_cols=509 Identities=13% Similarity=0.071 Sum_probs=358.1
Q ss_pred ccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC----CCCeEEEEECCCceee
Q 047837 6 NIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG----PQPAVLVWDCANLAFI 81 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~----~d~~I~vwd~~t~~~~ 81 (882)
+.|+|+ .++|.+.+.|.+||+.+++.. .+.+|. ..+.+++|||||++||+++.. .+..|++||+.+++ .
T Consensus 20 ~~~S~~---~iaf~~~~~l~~~~~~gg~~~-~lt~~~--~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~ 92 (1045)
T 1k32_A 20 PDIHGD---RIIFVCCDDLWEHDLKSGSTR-KIVSNL--GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-I 92 (1045)
T ss_dssp EEEETT---EEEEEETTEEEEEETTTCCEE-EEECSS--SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-E
T ss_pred cEEeCC---EEEEEECCcEEEEECCCCcEE-EeeeCC--CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-e
Confidence 566754 899999899999999988764 557888 899999999999999988642 34589999999887 5
Q ss_pred EEeeccccce-------eEEEECCCCCEEEEEc-C-------EEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEE
Q 047837 82 SELKGHLYGV-------ECIAFSPDGEHLVTVG-G-------YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIV 146 (882)
Q Consensus 82 ~~l~~h~~~V-------~~lafspdg~~Las~~-~-------~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~ 146 (882)
..|..|...+ ..++|||||+++++++ . .|.+||+.+++... +..+ ....++|+| | +++
T Consensus 93 ~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~----~~~~~~~sp-G-~l~ 165 (1045)
T 1k32_A 93 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG----PATHILFAD-G-RRV 165 (1045)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC----SCSEEEEET-T-EEE
T ss_pred EEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC----CcceeeeCC-C-EEE
Confidence 7788899888 9999999999777766 2 58889988877543 3322 335677999 8 777
Q ss_pred EECC-------------CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCc
Q 047837 147 TAGK-------------KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGE 213 (882)
Q Consensus 147 ~~~~-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (882)
+++. ...++|....+.. ...+..|
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~--------~~~l~~~----------------------------------- 202 (1045)
T 1k32_A 166 IGRNTFELPHWKGYRGGTRGKIWIEVNSGA--------FKKIVDM----------------------------------- 202 (1045)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTE--------EEEEECC-----------------------------------
T ss_pred EeccCCCccccccccCCCcCCEEEECCCCC--------eEECcCC-----------------------------------
Confidence 7532 2344554322110 0001111
Q ss_pred eeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeeccc-ceecccccccCcccCCCCCc
Q 047837 214 SFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQS-LKHAGTLHYSEAKKCNGEND 292 (882)
Q Consensus 214 ~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 292 (882)
...+.+++|+++ .+++++..++.+++|.+.. +.....+. .
T Consensus 203 ---------------------------~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~--------~--- 243 (1045)
T 1k32_A 203 ---------------------------STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT--------S--- 243 (1045)
T ss_dssp ---------------------------SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC--------C---
T ss_pred ---------------------------CCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec--------C---
Confidence 122367889988 6677788889999998753 22222111 1
Q ss_pred cccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCC
Q 047837 293 TVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPS 372 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~ 372 (882)
...+...+|+|||+.++...++.|++|++.... ...+.++.... ......|...
T Consensus 244 -----------------~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~----l~~l~~~~~~~-----~~~~~~~~~~ 297 (1045)
T 1k32_A 244 -----------------FTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK----IEKIEIGDLES-----PEDRIISIPS 297 (1045)
T ss_dssp -----------------CCSSCEEEEEESSSCEEEEETTEEEEECTTTCC----EEECCCCCCCB-----CCSEEEECGG
T ss_pred -----------------CCCcceeeEcCCCCEEEEEeCCEEEEecCCceE----eeeeccCcccc-----cccccccccc
Confidence 112335799999997777789999999983321 11222211000 0001225667
Q ss_pred cceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 373 v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
+.+++|++++|+.|++++ ++.|.+|++..+....
T Consensus 298 v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--------------------------------------------- 331 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--------------------------------------------- 331 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE---------------------------------------------
T ss_pred cceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE---------------------------------------------
Confidence 899999846888888887 7899999987654321
Q ss_pred CCCCEEEeeeccc-eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEE-EEEcCCCceeEEEeecCCCCEEEEEEcc
Q 047837 453 SRGSTLLLDAHDA-EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIH-LYDVKRNFDLIESIDDHSAAVTAVKFTC 530 (882)
Q Consensus 453 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~-iwd~~~~~~~~~~~~~h~~~v~~~~~s~ 530 (882)
+..|.. .+..++|+ +++ .++.++.++.+. +|++..+ . ...+.+|...+..++|+|
T Consensus 332 -------~~~~~~~~~~~~~~s-dg~-------------~l~~~s~~~~l~~~~d~~~~-~-~~~l~~~~~~~~~~~~Sp 388 (1045)
T 1k32_A 332 -------VPEPLRIRYVRRGGD-TKV-------------AFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDR 388 (1045)
T ss_dssp -------CSCCSCEEEEEECSS-SEE-------------EEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECT
T ss_pred -------ccCCCcceEEeeeEc-CCC-------------eEEEEECCCceEEEEECCCC-C-ceEecCCccceeeeEECC
Confidence 223444 66777777 665 788877788888 8998765 3 334447888999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC----------cEEEEEccCC
Q 047837 531 NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK----------KINSFSIAAG 600 (882)
Q Consensus 531 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----------~v~iwd~~~~ 600 (882)
||++|++++.++.|++||+.+++... +.. .+...+.+++|+|||++|++++.++ .|++||+.++
T Consensus 389 DG~~la~~~~~~~v~~~d~~tg~~~~-~~~-----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 389 NGKFAVVANDRFEIMTVDLETGKPTV-IER-----SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEE-EEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred CCCEEEEECCCCeEEEEECCCCceEE-ecc-----CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 99999999999999999998665332 221 2346789999999999999887654 8999999988
Q ss_pred ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-----------------------------------
Q 047837 601 KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE----------------------------------- 645 (882)
Q Consensus 601 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~----------------------------------- 645 (882)
+ +..+. .|...+..++|+|||++|+.++.++...+|+.....
T Consensus 463 ~-~~~l~--~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1045)
T 1k32_A 463 K-IFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 539 (1045)
T ss_dssp E-EEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC
T ss_pred c-EEEee--CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccc
Confidence 7 55554 677788899999999999999887777777643221
Q ss_pred --------EEEEEccCCCCeEEEEECCCCCEEEE-------------EeCCCeEEEEeCCCCCCCcccCCCCCcccEEEe
Q 047837 646 --------MVAKAMGHGEVITGVTFLPDCKHIVS-------------VGGDGLQRVKEKYGILPPRNFAQPAALSPIIFC 704 (882)
Q Consensus 646 --------~~~~~~~h~~~v~~l~~s~d~~~l~s-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s 704 (882)
.+..+..|.+.+..++|+|||+++++ ...+..|.+||+.+....... ..+..+.||
T Consensus 540 ~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S 616 (1045)
T 1k32_A 540 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLS 616 (1045)
T ss_dssp CCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEEC
T ss_pred ccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEEC
Confidence 12234446678899999999988885 123457888998876643222 445678899
Q ss_pred cCCCeEEEecccc
Q 047837 705 EEEDQKCRMDSVN 717 (882)
Q Consensus 705 ~~~~~~~~~~~~~ 717 (882)
+++..++......
T Consensus 617 ~DG~~l~~~~~~~ 629 (1045)
T 1k32_A 617 ADRKTVMVRKDDG 629 (1045)
T ss_dssp TTSCEEEEEETTS
T ss_pred CCCCEEEEEcCCc
Confidence 9998877665553
No 51
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-36 Score=330.46 Aligned_cols=350 Identities=12% Similarity=0.089 Sum_probs=222.8
Q ss_pred CCeEEEEEcCCC---------CEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEE
Q 047837 45 KPLCCVAMSRDG---------RYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLW 113 (882)
Q Consensus 45 ~~I~~va~spdg---------~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iW 113 (882)
+.|.+|+|+|++ ++||+|+. +.. . -..+|++++|++++ ++|+||
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~--~~~--------~---------------~~~~~~~~~laS~s~D~tI~iW 188 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVS--QYM--------D---------------EPLNEHLEMFDKEKHSSCIQIF 188 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEE--C-----------------------------------------CEEEEEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEe--ccc--------C---------------CccchhhhhhccCCCCceEEEE
Confidence 889999999987 89999975 221 0 12479999999998 999999
Q ss_pred EcCcceee----eeeecCCcccceeEEEEccC------CCEEEEECC-CcEEEEEcccCcccee---ccccCccceeecC
Q 047837 114 NWRSAMLV----MKLKANSSCSAITSACFSSD------AKFIVTAGK-KHLKFWTIGSSATART---RLNKGTESLTLHA 179 (882)
Q Consensus 114 d~~~g~~~----~~~~~~~~~~~v~~l~fs~d------~~~l~~~~~-~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~ 179 (882)
|+.++++. ..+..|. +.|..++|+|+ +.+||+++. ++|++||+..+..... ........+.+|.
T Consensus 189 d~~~~~~~~~~~~~l~~~~--~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 189 KMNTSTLHCVKVQTIVHSF--GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp EEETTTCCEEEEEEEEECC--CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred EccCCCCCceEEEEEEecC--CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 99887653 2344444 78999999996 578998875 8999999976543100 0000000111111
Q ss_pred ccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEE
Q 047837 180 KPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACA 259 (882)
Q Consensus 180 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~ 259 (882)
..+.+++|++++ .|++|
T Consensus 267 --------------------------------------------------------------~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 267 --------------------------------------------------------------SLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp --------------------------------------------------------------TCEEEEEESSSS-EEEEE
T ss_pred --------------------------------------------------------------CCEEEEEecCCC-eEEEE
Confidence 122667776643 67777
Q ss_pred ecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcc
Q 047837 260 CSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIH 339 (882)
Q Consensus 260 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~ 339 (882)
+.||+|++||+.+++.
T Consensus 284 s~DgtV~lWD~~~~~~---------------------------------------------------------------- 299 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEV---------------------------------------------------------------- 299 (524)
T ss_dssp ETTSEEEEEETTBCSS----------------------------------------------------------------
T ss_pred eCCCEEEEEECCCCCC----------------------------------------------------------------
Confidence 7777777777654311
Q ss_pred cccccceeeeeecCcceeeeecccCCCCCCCCCccee--eeccCCC-cEEEEeeCCCcEEEEecCCCceeeecccCCccc
Q 047837 340 DVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCV--ARGCTGG-VSFSTCSADGTIRLWDLALQSELSKDVLGHESL 416 (882)
Q Consensus 340 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~--~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 416 (882)
....+.+| ...|.++ +|+ +++ .+|++++.|++|++||+++++....
T Consensus 300 ------~~~~~~~H----------------~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD~~~~~~~~~-------- 348 (524)
T 2j04_B 300 ------PSFYDQVH----------------DSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFNPKDIATTKT-------- 348 (524)
T ss_dssp ------CSEEEECS----------------SSCEEEEEEECC-TTSCCEEEEEETTSEEEEECGGGHHHHCE--------
T ss_pred ------ceEEeecc----------------cccEEEEEEEcC-CCCCeEEEEeccCCeEEEEECCCCCcccc--------
Confidence 01123344 4445555 333 676 8999999999999999987654321
Q ss_pred eeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc--ceEEEEEEecCCCCCccceeccCCceEEEE
Q 047837 417 NIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD--AEILSLSFSLSSKKDDVLEEVTDSHYFLAS 494 (882)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 494 (882)
+.+|. ..|.+++|+|+++ .+++
T Consensus 349 -------------------------------------------~~~~~~~~~v~~v~fsp~~~-------------~l~s 372 (524)
T 2j04_B 349 -------------------------------------------TVSRFRGSNLVPVVYCPQIY-------------SYIY 372 (524)
T ss_dssp -------------------------------------------EEEECSCCSCCCEEEETTTT-------------EEEE
T ss_pred -------------------------------------------cccccccCcccceEeCCCcC-------------eEEE
Confidence 12333 2467888999887 8999
Q ss_pred EcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEE
Q 047837 495 GGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDM 574 (882)
Q Consensus 495 g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 574 (882)
++.|++|++||++++ ..+..+.+|...|.+|+|+|++++|++|+.|++|++||+... ................+..+
T Consensus 373 ~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v 449 (524)
T 2j04_B 373 SDGASSLRAVPSRAA-FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKW 449 (524)
T ss_dssp ECSSSEEEEEETTCT-TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEEC
T ss_pred eCCCCcEEEEECccc-ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEe
Confidence 999999999999886 556678889999999999999999999999999999998643 11110000001112357899
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcc-CCceEEEEEeccCCCCcEEEEECCCCC---EEEEEeCCCcEEEEEccC
Q 047837 575 DIDPTMEVVITVGQDKKINSFSIA-AGKLIRSFKQAKDFGDPMKVTVDPSGS---YLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 575 ~~sp~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~spdg~---~l~~~~~dg~i~iwd~~~ 643 (882)
+|+|++..+.. .. .+.+|+.. ++.++..+. +|...|.+++|+|++. +||+|+.||.|+||++.-
T Consensus 450 ~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 450 DYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp BCCSSSCEEEE-CC--CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccCCCCCeEEc-cC--CceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 99999985532 22 23344432 466777776 8999999999999954 999999999999999863
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-33 Score=315.05 Aligned_cols=343 Identities=20% Similarity=0.315 Sum_probs=259.0
Q ss_pred ceEEEEEecCCCCC-eEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CE
Q 047837 33 TQSHLMVSHRMPKP-LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GY 109 (882)
Q Consensus 33 ~~~~~l~~h~~~~~-I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~ 109 (882)
.....+.+|. .. ++|+.+ ++++||+|+. |+.|++||+.+++++..+.+|.+.|.+++|+|++ +|++++ ++
T Consensus 112 ~~~~~l~~h~--~~v~~~~~~--~~~~l~sgs~--dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 112 PQRTTLRGHM--TSVITCLQF--EDNYVITGAD--DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp CEEEEEECCS--SSCEEEEEE--ETTEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred cceEEEcCCC--CCcEEEEEE--CCCEEEEEcC--CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence 4556788998 55 577666 5679999966 8999999999999999999999999999999998 888888 99
Q ss_pred EEEEEcCcceeeeeeecCCcccceeEEEEcc--CCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccc
Q 047837 110 IYLWNWRSAMLVMKLKANSSCSAITSACFSS--DAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGI 186 (882)
Q Consensus 110 i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~--d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 186 (882)
|++||+.+++.+..+..|. ..|.+++|++ ++++|++++. +.|++||+.++..
T Consensus 185 i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~----------------------- 239 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS----------------------- 239 (464)
T ss_dssp EEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC-----------------------
T ss_pred EEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc-----------------------
Confidence 9999999999999988876 8898888874 5566666654 6677777654432
Q ss_pred cccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEE
Q 047837 187 QKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVH 266 (882)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~ 266 (882)
T Consensus 240 -------------------------------------------------------------------------------- 239 (464)
T 3v7d_B 240 -------------------------------------------------------------------------------- 239 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccce
Q 047837 267 LFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATR 346 (882)
Q Consensus 267 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~ 346 (882)
....... + ....+.+.+++ ....
T Consensus 240 ---------~~~~~~~-------~---------------------~~~~~~~~~~~--------------------~~~~ 262 (464)
T 3v7d_B 240 ---------VPDHGEE-------H---------------------DYPLVFHTPEE--------------------NPYF 262 (464)
T ss_dssp ---------C-------------C---------------------CSSEEESCGGG--------------------CTTE
T ss_pred ---------ccccccc-------C---------------------CcceEeeccCC--------------------CeEE
Confidence 1000000 0 00000000000 0011
Q ss_pred eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcce
Q 047837 347 CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHL 426 (882)
Q Consensus 347 ~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (882)
...+.+|...+. ++. ++++++++++.||.|++||+.+++.+.
T Consensus 263 ~~~~~~~~~~v~----------------~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~------------------- 304 (464)
T 3v7d_B 263 VGVLRGHMASVR----------------TVS---GHGNIVVSGSYDNTLIVWDVAQMKCLY------------------- 304 (464)
T ss_dssp EEEECCCSSCEE----------------EEE---EETTEEEEEETTSCEEEEETTTTEEEE-------------------
T ss_pred EEEccCccceEE----------------EEc---CCCCEEEEEeCCCeEEEEECCCCcEEE-------------------
Confidence 112334444333 332 578899999999999999998765432
Q ss_pred EeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEc
Q 047837 427 VSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDV 506 (882)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~ 506 (882)
.+.+|...|.+++|+|+++ ++++|+.||.|++||+
T Consensus 305 --------------------------------~~~~~~~~v~~~~~~~~~~-------------~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 305 --------------------------------ILSGHTDRIYSTIYDHERK-------------RCISASMDTTIRIWDL 339 (464)
T ss_dssp --------------------------------EECCCSSCEEEEEEETTTT-------------EEEEEETTSCEEEEET
T ss_pred --------------------------------EecCCCCCEEEEEEcCCCC-------------EEEEEeCCCcEEEEEC
Confidence 2457889999999999988 9999999999999999
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE
Q 047837 507 KRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV 586 (882)
Q Consensus 507 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 586 (882)
.++ +.+..+.+|...|.+++|+ +.+|++++.||.|++||+.+....... .+...+..++|++++++++++
T Consensus 340 ~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 340 ENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp TTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-------ECTTCCCEEEEEECSSEEEEE
T ss_pred CCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-------cCCCCccEEEEEeCCCEEEEe
Confidence 887 7888999999999999996 689999999999999999875543332 133578889999999999999
Q ss_pred eCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 587 GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 587 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
+ |+.|++||+++++.+..+. ..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 410 ~-dg~i~iwd~~~g~~~~~~~-~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 410 S-ENQFNIYNLRSGKLVHANI-LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp E-TTEEEEEETTTCCEEESCT-TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred c-CCeEEEEECCCCcEEehhh-ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 8 8999999999999987633 2678899999997 344555666777655543
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.5e-34 Score=302.27 Aligned_cols=294 Identities=17% Similarity=0.278 Sum_probs=226.9
Q ss_pred CCCceEEEEEecCCCCCeEEEEEcCC-CCEEEEeecCCCCeEEEEECCCc-----eeeEEeeccccceeEEEECCCCCEE
Q 047837 30 DSSTQSHLMVSHRMPKPLCCVAMSRD-GRYVAAGESGPQPAVLVWDCANL-----AFISELKGHLYGVECIAFSPDGEHL 103 (882)
Q Consensus 30 ~~~~~~~~l~~h~~~~~I~~va~spd-g~~la~g~~~~d~~I~vwd~~t~-----~~~~~l~~h~~~V~~lafspdg~~L 103 (882)
++.+.+.+|.||. +.|++|+|+|+ +++||+|+. |++|+|||+.++ .+...+.+|...|.+++|+|||++|
T Consensus 26 ~~~~l~~tL~GH~--~~V~~v~~sp~~~~~l~S~s~--D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l 101 (340)
T 4aow_A 26 EQMTLRGTLKGHN--GWVTQIATTPQFPDMILSASR--DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA 101 (340)
T ss_dssp CEEEEEEEECCCS--SCEEEEEECTTCTTEEEEEET--TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CceEEEEEECCcc--CCEEEEEEeCCCCCEEEEEcC--CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE
Confidence 3344556789999 89999999998 689999966 899999998764 4567899999999999999999999
Q ss_pred EEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCc
Q 047837 104 VTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAK 180 (882)
Q Consensus 104 as~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (882)
++++ +.|++|+...+........+. ..+..+.+++++++|++++. +.+++||+........ ....|..
T Consensus 102 ~s~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~-------~~~~~~~ 172 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV-------QDESHSE 172 (340)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE-------CSSSCSS
T ss_pred EEEcccccceEEeecccceeeeecCCC--CceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE-------EeccccC
Confidence 9999 999999999999888887776 78999999999999999875 8999999865433100 0111111
Q ss_pred cccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCC--CEEEE
Q 047837 181 PVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASS--KLIAC 258 (882)
Q Consensus 181 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~--~~l~~ 258 (882)
.+..++|++++ .++++
T Consensus 173 --------------------------------------------------------------~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 173 --------------------------------------------------------------WVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp --------------------------------------------------------------CEEEEEECSCSSSCEEEE
T ss_pred --------------------------------------------------------------cccceEEccCCCCcEEEE
Confidence 12556666653 46677
Q ss_pred EecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEc
Q 047837 259 ACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDI 338 (882)
Q Consensus 259 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~ 338 (882)
++.|+.|++||+.+++...
T Consensus 191 ~~~d~~i~i~d~~~~~~~~------------------------------------------------------------- 209 (340)
T 4aow_A 191 CGWDKLVKVWNLANCKLKT------------------------------------------------------------- 209 (340)
T ss_dssp EETTSCEEEEETTTTEEEE-------------------------------------------------------------
T ss_pred EcCCCEEEEEECCCCceee-------------------------------------------------------------
Confidence 7778888888776543321
Q ss_pred ccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCcccee
Q 047837 339 HDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNI 418 (882)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 418 (882)
.+. +|...|++++|+ +++++|++++.||+|++||+.+.+.+..
T Consensus 210 ----------~~~----------------~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~---------- 252 (340)
T 4aow_A 210 ----------NHI----------------GHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYT---------- 252 (340)
T ss_dssp ----------EEC----------------CCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEE----------
T ss_pred ----------Eec----------------CCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEeccCceeee----------
Confidence 122 355667777787 7899999999999999999987654422
Q ss_pred eecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCC
Q 047837 419 EPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD 498 (882)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d 498 (882)
..+...|.++.|+|++. +++++.|
T Consensus 253 ------------------------------------------~~~~~~v~~~~~~~~~~--------------~~~~~~d 276 (340)
T 4aow_A 253 ------------------------------------------LDGGDIINALCFSPNRY--------------WLCAATG 276 (340)
T ss_dssp ------------------------------------------EECSSCEEEEEECSSSS--------------EEEEEET
T ss_pred ------------------------------------------ecCCceEEeeecCCCCc--------------eeeccCC
Confidence 12345688888888775 6677789
Q ss_pred CcEEEEEcCCCceeEEE---------eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc
Q 047837 499 RTIHLYDVKRNFDLIES---------IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~---------~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
+.|++||++.. ..+.. ..+|...|++++|+|++++|++++.||.|++||+.++.
T Consensus 277 ~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTT-EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCC-eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999875 34333 34688999999999999999999999999999998764
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.4e-35 Score=310.88 Aligned_cols=301 Identities=16% Similarity=0.158 Sum_probs=216.1
Q ss_pred CcEEEeecCCCeEEEEeC--------CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 312 NAIACQFSTSEKLVVVYG--------DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 312 ~~~~~~~s~~~~ll~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
++++++|+||+++|++++ ++.|++|+++......... + .....+. +..|...|.+++++ +
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-~----~~~~~~~----l~~~~~~v~s~~~~---~ 83 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-F----HILSEFA----LEDNDDSPTAIDAS---K 83 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-E----EEEEEEE----CCTTSCCCCEEEEE---T
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-e----eeeeEEE----ccCCCCceEEEEeC---C
Confidence 588999999999777643 3469999997654321110 0 0111111 23455666666654 4
Q ss_pred cEEEEe-----------eCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 384 VSFSTC-----------SADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 384 ~~l~t~-----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
+.++++ +.|+.+++|++.......+.. ....+
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~------------------------------------~~~~~- 126 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL------------------------------------TSVDF- 126 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE------------------------------------EEECS-
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEe------------------------------------eeece-
Confidence 455544 457778888876543221100 00000
Q ss_pred CCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEE--EEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc
Q 047837 453 SRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLA--SGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC 530 (882)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~ 530 (882)
.....++..+.+++|+|+++ +++ +++.|++|+|||+.++ ..+..+. |...|.+++|+|
T Consensus 127 -----~~~~~~~~~~~~v~fSpDg~-------------~la~as~~~d~~i~iwd~~~~-~~~~~~~-~~~~V~~v~fsp 186 (365)
T 4h5i_A 127 -----DASTNADDYTKLVYISREGT-------------VAAIASSKVPAIMRIIDPSDL-TEKFEIE-TRGEVKDLHFST 186 (365)
T ss_dssp -----SCCCCTTCCEEEEEECTTSS-------------CEEEEESCSSCEEEEEETTTT-EEEEEEE-CSSCCCEEEECT
T ss_pred -----eecCCcccCEEEEEEcCCCC-------------EEEEEECCCCCEEEEeECCCC-cEEEEeC-CCCceEEEEEcc
Confidence 00123445577778888776 554 5568999999999987 5666665 778899999999
Q ss_pred CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC----cEEEEEccCCceE--E
Q 047837 531 NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK----KINSFSIAAGKLI--R 604 (882)
Q Consensus 531 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~~~--~ 604 (882)
||++|++++.++ +.+|+..++....... ...|...|.+++|+|+++++++++.|+ .+++||+..+... .
T Consensus 187 dg~~l~s~s~~~-~~~~~~~~~~~~~~~~----~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~ 261 (365)
T 4h5i_A 187 DGKVVAYITGSS-LEVISTVTGSCIARKT----DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR 261 (365)
T ss_dssp TSSEEEEECSSC-EEEEETTTCCEEEEEC----CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE
T ss_pred CCceEEecccee-EEEEEeccCcceeeee----cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee
Confidence 999999998665 6666666554433221 223456899999999999999999887 6888998766532 2
Q ss_pred EEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 605 SFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA-MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 605 ~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
.....+|...|++++|+|||++||+|+.|++|+|||+++++++..+ .+|...|++|+|+|||++|+|++.|++|||||+
T Consensus 262 ~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 262 SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 2222388899999999999999999999999999999999999885 789999999999999999999999999999999
Q ss_pred CCC
Q 047837 684 YGI 686 (882)
Q Consensus 684 ~~~ 686 (882)
...
T Consensus 342 p~~ 344 (365)
T 4h5i_A 342 PLN 344 (365)
T ss_dssp CTT
T ss_pred CCC
Confidence 643
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-36 Score=330.09 Aligned_cols=331 Identities=11% Similarity=0.064 Sum_probs=221.4
Q ss_pred ecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC------Ce
Q 047837 250 SASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS------EK 323 (882)
Q Consensus 250 s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------~~ 323 (882)
+|+++.+++++.|++|+||++.+++...... ..+..+...+..++|+|+ +.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~-----------------------~~l~~~~~~V~~v~wsp~~~~~~~~~ 226 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKV-----------------------QTIVHSFGEVWDLKWHEGCHAPHLVG 226 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEE-----------------------EEEEECCCSEEEEEECSSCCCSSSSC
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEE-----------------------EEEEecCCcEEEEEECCCCCCCCCCc
Confidence 5788899999999999999998765321100 001123455778999996 34
Q ss_pred -EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCC
Q 047837 324 -LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLAL 402 (882)
Q Consensus 324 -ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~ 402 (882)
+++++.|++|++||+..+....... + ....++. .+.+|...|++++|+ ++ ..|++|+.||+|++||+.+
T Consensus 227 ~LAs~s~DgtvrlWd~~~~~~~~~~~-~-~~~~p~~------~l~~h~~~v~sv~~s-~~-~~lasgs~DgtV~lWD~~~ 296 (524)
T 2j04_B 227 CLSFVSQEGTINFLEIIDNATDVHVF-K-MCEKPSL------TLSLADSLITTFDFL-SP-TTVVCGFKNGFVAEFDLTD 296 (524)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSSEE-E-CCCSCSE------EECCTTTCEEEEEES-SS-SEEEEEETTSEEEEEETTB
T ss_pred eEEEEecCCeEEEEEcCCCccccccc-e-eecCceE------EEEcCCCCEEEEEec-CC-CeEEEEeCCCEEEEEECCC
Confidence 5557789999999997653221000 0 0000111 124577889999998 43 4899999999999999986
Q ss_pred CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEE--EEecCC-CCC
Q 047837 403 QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSL--SFSLSS-KKD 479 (882)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~--~~~~~~-~~~ 479 (882)
+... ...+.+|...|.++ +|++++ .
T Consensus 297 ~~~~--------------------------------------------------~~~~~~H~~~V~sv~~~~s~~g~~-- 324 (524)
T 2j04_B 297 PEVP--------------------------------------------------SFYDQVHDSYILSVSTAYSDFEDT-- 324 (524)
T ss_dssp CSSC--------------------------------------------------SEEEECSSSCEEEEEEECCTTSCC--
T ss_pred CCCc--------------------------------------------------eEEeecccccEEEEEEEcCCCCCe--
Confidence 4321 11356899999999 567766 5
Q ss_pred ccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCC--CEEEEEEccCCCEEEEEeCCCeEEEEeCccCcccee
Q 047837 480 DVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSA--AVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
+|++|+.|++|+|||++++ +....+.+|.. .|.+++|+|+++.+++++.|++|++||+++......
T Consensus 325 -----------~laS~S~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~ 392 (524)
T 2j04_B 325 -----------VVSTVAVDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP 392 (524)
T ss_dssp -----------EEEEEETTSEEEEECGGGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE
T ss_pred -----------EEEEeccCCeEEEEECCCC-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee
Confidence 8999999999999999875 45555666653 588999999999999999999999999987654333
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec---cCCCCcEEEEECCCCCEEEEEeCCC
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA---KDFGDPMKVTVDPSGSYLVCSYSNK 634 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~~dg 634 (882)
+ .+|.+.|++++|+|++++|++|+.|++|++||+..+ .+..+... .+...+.+++|+|++..+.. ..
T Consensus 393 l------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~-- 462 (524)
T 2j04_B 393 L------VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS-- 462 (524)
T ss_dssp E------EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--
T ss_pred e------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--
Confidence 2 245689999999999999999999999999998754 32221100 11124678999999986532 22
Q ss_pred cEEEEEcc-CCeEEEEEccCCCCeEEEEECCCCC---EEEEEeCCCeEEEEeCCCCC
Q 047837 635 SICLYDFI-SGEMVAKAMGHGEVITGVTFLPDCK---HIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 635 ~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~d~~---~l~s~~~dg~i~vwd~~~~~ 687 (882)
.+.+|+.. ++..+..+.+|...|.+|+|+|+++ .|++|+.||.|+||++....
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 23455443 5778888999999999999999964 99999999999999987654
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-33 Score=308.91 Aligned_cols=310 Identities=18% Similarity=0.293 Sum_probs=256.3
Q ss_pred EEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEE
Q 047837 248 ALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVV 327 (882)
Q Consensus 248 ~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~ 327 (882)
++++++++|++|+.||.|++||+.+++.+..+. .+...+.+++|+ ++.++++
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~---------------------------~h~~~v~~~~~~-~~~l~s~ 175 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV---------------------------GHTGGVWSSQMR-DNIIISG 175 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECC---------------------------CCSSCEEEEEEE-TTEEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc---------------------------CCCCCEEEEEec-CCEEEEE
Confidence 356679999999999999999999887765543 344556688887 4578888
Q ss_pred eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceee
Q 047837 328 YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELS 407 (882)
Q Consensus 328 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~ 407 (882)
+.|+.|++||+.+++.. ..+.+ |...|.+++++ ++.+++++.||+|++||+.+++.+.
T Consensus 176 ~~dg~i~vwd~~~~~~~---~~~~~----------------h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 176 STDRTLKVWNAETGECI---HTLYG----------------HTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp ETTSCEEEEETTTTEEE---EEECC----------------CSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred eCCCeEEEEECCcCcEE---EEECC----------------CCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 88999999999876432 23444 45556666664 5679999999999999998765432
Q ss_pred ecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccC
Q 047837 408 KDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTD 487 (882)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 487 (882)
.+.+|...|.++++ ++.
T Consensus 234 ---------------------------------------------------~~~~~~~~v~~~~~--~~~---------- 250 (445)
T 2ovr_B 234 ---------------------------------------------------VLMGHVAAVRCVQY--DGR---------- 250 (445)
T ss_dssp ---------------------------------------------------EEECCSSCEEEEEE--CSS----------
T ss_pred ---------------------------------------------------EEcCCcccEEEEEE--CCC----------
Confidence 24578888999988 444
Q ss_pred CceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceeccc
Q 047837 488 SHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 488 ~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
++++|+.||.|++||+.++ ..+..+.+|...|.+++| ++.++++++.|+.|++||+.+++....+. .|
T Consensus 251 ---~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~ 318 (445)
T 2ovr_B 251 ---RVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT------GH 318 (445)
T ss_dssp ---CEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred ---EEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc------CC
Confidence 7999999999999999887 788889999999999999 88999999999999999998766544332 33
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec-cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA-KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
...+.++.+ +++++++++.|+.|++||+.+++.+..+... .|...|++++|+ +++|++++.||.|++||+.+++.
T Consensus 319 ~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 319 QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 467777776 4679999999999999999999999988732 278899999996 68999999999999999999999
Q ss_pred EEEE-----ccCCCCeEEEEECCCCCEEEEEeCCCe----EEEEeCCCC
Q 047837 647 VAKA-----MGHGEVITGVTFLPDCKHIVSVGGDGL----QRVKEKYGI 686 (882)
Q Consensus 647 ~~~~-----~~h~~~v~~l~~s~d~~~l~s~~~dg~----i~vwd~~~~ 686 (882)
+..+ .+|.+.|.+++|+|++.+|++++.||+ |.+||+...
T Consensus 395 ~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 395 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9888 468899999999999999999999998 999998753
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-33 Score=299.26 Aligned_cols=308 Identities=19% Similarity=0.292 Sum_probs=247.8
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--CEEE
Q 047837 34 QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GYIY 111 (882)
Q Consensus 34 ~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~ 111 (882)
....+.+|. +.|++++|+|++++||+|+. |+.|+|||+.+++.+..+.+|...|.+++|+|++++|++++ +.|+
T Consensus 24 ~~~~l~~h~--~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 24 KAIKLTGHE--RPLTQVKYNKEGDLLFSCSK--DSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEECCS--SCEEEEEECTTSCEEEEEES--SSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccEEEEEee--ceEEEEEEcCCCCEEEEEeC--CCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445678998 89999999999999999965 88999999999999999999999999999999999999998 9999
Q ss_pred EEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccce
Q 047837 112 LWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESY 191 (882)
Q Consensus 112 iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 191 (882)
+||+.+++.+..+. +. ..|.+++|+|++++|++++.+
T Consensus 100 iwd~~~~~~~~~~~-~~--~~v~~~~~~~~~~~l~~~~~~---------------------------------------- 136 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SP--VPVKRVEFSPCGNYFLAILDN---------------------------------------- 136 (369)
T ss_dssp EEETTTCCEEEEEE-CS--SCEEEEEECTTSSEEEEEECC----------------------------------------
T ss_pred EEECCCCcEEEEee-cC--CCeEEEEEccCCCEEEEecCC----------------------------------------
Confidence 99999998888776 32 667677666666655544321
Q ss_pred EEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecc
Q 047837 192 FVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQ 271 (882)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~ 271 (882)
.+..+|.|++||+.
T Consensus 137 ------------------------------------------------------------------~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 137 ------------------------------------------------------------------VMKNPGSINIYEIE 150 (369)
T ss_dssp ------------------------------------------------------------------BTTBCCEEEEEEEE
T ss_pred ------------------------------------------------------------------ccCCCCEEEEEEec
Confidence 00012556666654
Q ss_pred cceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeee
Q 047837 272 SLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLV 351 (882)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~ 351 (882)
.......
T Consensus 151 ~~~~~~~------------------------------------------------------------------------- 157 (369)
T 3zwl_B 151 RDSATHE------------------------------------------------------------------------- 157 (369)
T ss_dssp ECTTTCC-------------------------------------------------------------------------
T ss_pred CCcccee-------------------------------------------------------------------------
Confidence 3211100
Q ss_pred cCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeee
Q 047837 352 SHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGI 431 (882)
Q Consensus 352 ~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (882)
+...... .+
T Consensus 158 ----------------------------------~~~~~~~-~~------------------------------------ 166 (369)
T 3zwl_B 158 ----------------------------------LTKVSEE-PI------------------------------------ 166 (369)
T ss_dssp ----------------------------------EEEECSS-CS------------------------------------
T ss_pred ----------------------------------ecccccc-ee------------------------------------
Confidence 0000000 00
Q ss_pred eeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc--eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC
Q 047837 432 FERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA--EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN 509 (882)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~ 509 (882)
..+..|.. .+.+++|+|+++ ++++++.||.|++||+.+.
T Consensus 167 --------------------------~~~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 167 --------------------------HKIITHEGLDAATVAGWSTKGK-------------YIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp --------------------------EEEECCTTCCCEEEEEECGGGC-------------EEEEEETTSEEEEEETTTT
T ss_pred --------------------------eeccCCcCccceeEEEEcCCCC-------------EEEEEcCCCEEEEEECCCC
Confidence 01123333 778888888877 8999999999999999985
Q ss_pred ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC
Q 047837 510 FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD 589 (882)
Q Consensus 510 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 589 (882)
...+..+..|...|.+++|+|++++|++++.|+.|++||+.+......+. +...+..++|+|+++++++++.+
T Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 208 YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-------TDCPLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CSSCEEEEEECSSSSEEEEEECC
T ss_pred cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-------CCCCceeEEecCCCceEEEeecC
Confidence 58888999999999999999999999999999999999998766544443 34689999999999999999998
Q ss_pred C--------------cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 590 K--------------KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 590 ~--------------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
+ .+++||+.+++.+..+. +|...|++++|+|++++|++++.||.|++|+++++..
T Consensus 281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 281 EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp C-------------CEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred CCceEEEEecCCCcceeEEEecCCCcchhhee--cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 8 89999999999999998 8999999999999999999999999999999987643
No 58
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-33 Score=308.56 Aligned_cols=287 Identities=21% Similarity=0.322 Sum_probs=238.8
Q ss_pred EEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCC
Q 047837 314 IACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADG 393 (882)
Q Consensus 314 ~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg 393 (882)
..++|++++ +|+++.|++|+|||..+++... .+.. ..|...|++++|+ +++++|++|+.||
T Consensus 109 ~~l~wS~~n-~lAvgld~tV~lWd~~tg~~~~---~~~~--------------~~~~~~V~sv~fs-pdg~~lasgs~Dg 169 (420)
T 4gga_A 109 NLVDWSSGN-VLAVALDNSVYLWSASSGDILQ---LLQM--------------EQPGEYISSVAWI-KEGNYLAVGTSSA 169 (420)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCCEEE---EEEC--------------CSTTCCEEEEEEC-TTSSEEEEEETTS
T ss_pred eeEEECCCC-EEEEEeCCEEEEEECCCCCEEE---EEEe--------------cCCCCcEEEEEEC-CCCCEEEEEECCC
Confidence 358899865 5666679999999998875432 1221 2466778888898 8999999999999
Q ss_pred cEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEe
Q 047837 394 TIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFS 473 (882)
Q Consensus 394 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~ 473 (882)
+|++||+.+++.+. .+.+|...+.++.++
T Consensus 170 ~v~iWd~~~~~~~~---------------------------------------------------~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 170 EVQLWDVQQQKRLR---------------------------------------------------NMTSHSARVGSLSWN 198 (420)
T ss_dssp CEEEEETTTTEEEE---------------------------------------------------EECCCSSCEEEEEEE
T ss_pred eEEEEEcCCCcEEE---------------------------------------------------EEeCCCCceEEEeeC
Confidence 99999999876543 245788888888876
Q ss_pred cCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc
Q 047837 474 LSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
+. ++++|+.|+.+++||.......+..+.+|...+..+.++|+++++++++.|+.+++|+...++
T Consensus 199 ~~---------------~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 199 SY---------------ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp TT---------------EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred CC---------------EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 43 899999999999999988777888999999999999999999999999999999999998665
Q ss_pred cceeeeccceecccCCceEEEEEecCCC-EEEEE--eCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEE
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTME-VVITV--GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS 630 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 630 (882)
..... ......+...|.+++|+|++. +++++ +.|++|++||+.+++++..+. +...+.++.|+|+++.++++
T Consensus 264 ~~~~~--~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~---~~~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 264 GGWVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISG 338 (420)
T ss_dssp SCSCC--SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE---CSSCEEEEEEETTTTEEEEE
T ss_pred cccee--eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec---cccceeeeeecCCCCeEEEE
Confidence 33221 122334567999999999765 55543 479999999999999998886 45689999999999998876
Q ss_pred e--CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 631 Y--SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 631 ~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
+ .|+.|+|||+.+++++..+.+|.+.|++|+|+|||++|+|++.|++|+|||+.+..+..
T Consensus 339 sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred EecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 5 78999999999999999999999999999999999999999999999999998765443
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4e-33 Score=296.70 Aligned_cols=289 Identities=20% Similarity=0.268 Sum_probs=234.6
Q ss_pred CCCCCcEEEeecCC-Ce-EEEEeCCceEEEEEcccccccce--eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 308 PTIPNAIACQFSTS-EK-LVVVYGDHSLYVWDIHDVNEATR--CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 308 ~~~~~~~~~~~s~~-~~-ll~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
+|...|.+++|+|+ ++ +++++.|++|++||+...+.... ...+ .+|...|.+++|+ +++
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l----------------~~h~~~V~~~~~s-~dg 98 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL----------------RGHSHFVSDVVIS-SDG 98 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE----------------CCCSSCEEEEEEC-TTS
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE----------------eCCCCCEEEEEEC-CCC
Confidence 45566679999998 45 55678899999999976543221 1222 3467777888887 899
Q ss_pred cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 384 VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 384 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
++|++++.|+.|++|+......... ...+
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~---------------------------------------------------~~~~ 127 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRR---------------------------------------------------FVGH 127 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE---------------------------------------------------EECC
T ss_pred CEEEEEcccccceEEeecccceeee---------------------------------------------------ecCC
Confidence 9999999999999999987654321 2345
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCC--CEEEEEeCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNG--RKILSCSAD 541 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d 541 (882)
...+....+++.+. ++++|+.|+.+++||............+|...+..++|++++ .++++++.|
T Consensus 128 ~~~~~~~~~~~~~~-------------~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 128 TKDVLSVAFSSDNR-------------QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp SSCEEEEEECTTSS-------------CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred CCceeEEEEeecCc-------------cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 56667777777777 899999999999999987656666677899999999999854 578899999
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
+.|++||+.+......+ ..|.+.|++++|+|++++|++++.|+.|++||+.+++.+..+. +...+.+++|+
T Consensus 195 ~~i~i~d~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~ 265 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNH------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFS 265 (340)
T ss_dssp SCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---CSSCEEEEEEC
T ss_pred CEEEEEECCCCceeeEe------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---CCceEEeeecC
Confidence 99999999866543332 2455799999999999999999999999999999999998886 45689999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCeEEEEEc---------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 622 PSGSYLVCSYSNKSICLYDFISGEMVAKAM---------GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 622 pdg~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
|++.++++ +.|+.|++||++++..+..+. +|...|++++|+|||++|++++.||.|+|||++++.
T Consensus 266 ~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 266 PNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSSSEEEE-EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCceeec-cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99876655 468999999999887776653 588999999999999999999999999999998764
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=300.09 Aligned_cols=287 Identities=16% Similarity=0.238 Sum_probs=240.9
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
|...+.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------------------------- 69 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT----------------------------------------- 69 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-----------------------------------------
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-----------------------------------------
Confidence 455668899999999999999999999998876543211
Q ss_pred CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEe
Q 047837 320 TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWD 399 (882)
Q Consensus 320 ~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd 399 (882)
+. .|...|.+++|+ +++++|++++.||.|++||
T Consensus 70 ------------------------------~~----------------~h~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 70 ------------------------------LD----------------GHTGTIWSIDVD-CFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp ------------------------------EC----------------CCSSCEEEEEEC-TTSSEEEEEETTTEEEEEE
T ss_pred ------------------------------hh----------------hcCCcEEEEEEc-CCCCEEEEEeCCCeEEEEE
Confidence 22 255667777777 7899999999999999999
Q ss_pred cCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCC
Q 047837 400 LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKD 479 (882)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (882)
+.+++.+.. + .+...|.+++|+|++.
T Consensus 103 ~~~~~~~~~---------------------------------------------------~-~~~~~v~~~~~~~~~~-- 128 (369)
T 3zwl_B 103 VSNGQCVAT---------------------------------------------------W-KSPVPVKRVEFSPCGN-- 128 (369)
T ss_dssp TTTCCEEEE---------------------------------------------------E-ECSSCEEEEEECTTSS--
T ss_pred CCCCcEEEE---------------------------------------------------e-ecCCCeEEEEEccCCC--
Confidence 987665432 1 2667888999999888
Q ss_pred ccceeccCCceEEEEEcCC-----CcEEEEEcCCCc----------eeEEEeecCCC--CEEEEEEccCCCEEEEEeCCC
Q 047837 480 DVLEEVTDSHYFLASGGRD-----RTIHLYDVKRNF----------DLIESIDDHSA--AVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 480 ~~~~~~~~~~~~l~~g~~d-----g~v~iwd~~~~~----------~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg 542 (882)
++++++.+ +.|++||+.... .....+..|.. .+.+++|+|++++|++++.||
T Consensus 129 -----------~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 197 (369)
T 3zwl_B 129 -----------YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG 197 (369)
T ss_dssp -----------EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred -----------EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence 89999988 999999987642 13445556666 999999999999999999999
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
.|++||+.+......... .|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+..++|+|
T Consensus 198 ~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~ 269 (369)
T 3zwl_B 198 KISKYDVSNNYEYVDSID-----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITP 269 (369)
T ss_dssp EEEEEETTTTTEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECS
T ss_pred EEEEEECCCCcEeEEEEe-----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecC
Confidence 999999987433333322 244789999999999999999999999999999999998886 678899999999
Q ss_pred CCCEEEEEeCCC--------------cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 623 SGSYLVCSYSNK--------------SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 623 dg~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
+++++++++.++ .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++....
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 999999999888 89999999999999999999999999999999999999999999999997644
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-33 Score=306.34 Aligned_cols=248 Identities=16% Similarity=0.119 Sum_probs=198.9
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
+|...|.+++|++.++.+|++++.|+.|++||+.... ....
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~-------------------------------------- 156 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVF-------------------------------------- 156 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEE--------------------------------------
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEE--------------------------------------
Confidence 3566777888873378999999999999999998532 1110
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
.....|...|.+++|+|++. ++++|+.|+.|++||+. + ..+..+.+|...|.+++
T Consensus 157 ----------~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 157 ----------AKTDSWDYWYCCVDVSVSRQ-------------MLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp ----------ECCCCSSCCEEEEEEETTTT-------------EEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEE
T ss_pred ----------eccCCCCCCeEEEEECCCCC-------------EEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEE
Confidence 00124567899999999988 99999999999999994 3 67788899999999999
Q ss_pred EccCCC-EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEccCCceEEE
Q 047837 528 FTCNGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSIAAGKLIRS 605 (882)
Q Consensus 528 ~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~ 605 (882)
|+|+++ +|++++.|+.|++||+.+........ ....|...|.+++|+| ++++|++++.|+.|++||+++++.+..
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI---AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE---EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE---EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 999999 99999999999999998743221111 1113568999999999 999999999999999999999988777
Q ss_pred EEecc-----CC----------CCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc--CCCCeEEEEECCCCCE
Q 047837 606 FKQAK-----DF----------GDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG--HGEVITGVTFLPDCKH 668 (882)
Q Consensus 606 ~~~~~-----~~----------~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~d~~~ 668 (882)
+..+. |. ..+..++|+|++++ +++.|+.|++||+.+++.+..+.+ |...+..++|+|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 76321 12 23344666666666 667899999999999999999987 5677888899999999
Q ss_pred EEEEeCCCeEEEEeCCC
Q 047837 669 IVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 669 l~s~~~dg~i~vwd~~~ 685 (882)
|++++ |+.|++||+++
T Consensus 367 l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 367 LASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEE-TTEEEEEECC-
T ss_pred EEEec-CCcEEEEecCC
Confidence 99997 99999999875
No 62
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-33 Score=303.99 Aligned_cols=293 Identities=15% Similarity=0.195 Sum_probs=240.3
Q ss_pred CCCCCcEEEeecCC---C--eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 308 PTIPNAIACQFSTS---E--KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 308 ~~~~~~~~~~~s~~---~--~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
.+...+.+++|+|+ + .+++++.++.|++||+.+++.... +..|.. ..|...|.+++|+ ++
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~---~~~~~~-----------~~~~~~v~~~~~~-~~ 80 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL---LQSYVD-----------ADADENFYTCAWT-YD 80 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE---EEEEEC-----------SCTTCCEEEEEEE-EC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe---eeeccc-----------cCCCCcEEEEEec-cC
Confidence 46667889999984 3 477888888999999987654332 222211 2367788899998 56
Q ss_pred ----CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEE
Q 047837 383 ----GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTL 458 (882)
Q Consensus 383 ----~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 458 (882)
+.+|++++.||.|++||+.+++.+.
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--------------------------------------------------- 109 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIK--------------------------------------------------- 109 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEE---------------------------------------------------
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEee---------------------------------------------------
Confidence 6799999999999999998765432
Q ss_pred EeeeccceEEEEEEec-CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe---ecCCCCEEEEEEccCCCE
Q 047837 459 LLDAHDAEILSLSFSL-SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI---DDHSAAVTAVKFTCNGRK 534 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~ 534 (882)
.+.+|...|.+++|+| ++. +|++|+.||.|++||+.++ +.+..+ .+|...|.+++|+|++++
T Consensus 110 ~~~~~~~~i~~~~~~~~~~~-------------~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 110 HYVGHGNAINELKFHPRDPN-------------LLLSVSKDHALRLWNIQTD-TLVAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp EEESCCSCEEEEEECSSCTT-------------EEEEEETTSCEEEEETTTT-EEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred eecCCCCcEEEEEECCCCCC-------------EEEEEeCCCeEEEEEeecC-eEEEEecccccccCceeEEEECCCCCE
Confidence 2457899999999999 776 9999999999999999887 666676 689999999999999999
Q ss_pred EEEEeCCCeEEEEeCccCccceeeec----------------------cceecccCCceEEEEEecCCCEEEEEeCCCcE
Q 047837 535 ILSCSADRSLVVRDVVETNSAYKISR----------------------RHQQLASQGTVYDMDIDPTMEVVITVGQDKKI 592 (882)
Q Consensus 535 l~s~~~dg~i~vwd~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v 592 (882)
|++++.|+.|++||+.+......+.. ......|...|.+++|+ +++|++++.|+.|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence 99999999999999986543322111 00111266899999999 7799999999999
Q ss_pred EEEEccCCce--------------EEEEEeccCCCCcEEEEECCC--CCEEEEEeCCCcEEEEEccCCe----EEEEEcc
Q 047837 593 NSFSIAAGKL--------------IRSFKQAKDFGDPMKVTVDPS--GSYLVCSYSNKSICLYDFISGE----MVAKAMG 652 (882)
Q Consensus 593 ~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~ 652 (882)
++||+.+++. +..+. .|...|++++|+|+ +++|++++.||.|++||+.+++ ....+.+
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 331 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 331 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC
T ss_pred EEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc
Confidence 9999988754 66666 78899999999999 9999999999999999999875 4557887
Q ss_pred C--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 653 H--GEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 653 h--~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
| ...|++++|+|++++|++++.||.|++||+.
T Consensus 332 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 332 HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 7 7999999999999999999999999999985
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-33 Score=307.78 Aligned_cols=322 Identities=18% Similarity=0.295 Sum_probs=252.6
Q ss_pred CceEEEEEecCCCCC-eEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--C
Q 047837 32 STQSHLMVSHRMPKP-LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--G 108 (882)
Q Consensus 32 ~~~~~~l~~h~~~~~-I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~ 108 (882)
.+....+.+|. +. ++| ++++|++||+|+. |+.|++||+.+++++..+.+|...|.+++|+ +.+|++++ +
T Consensus 108 ~~~~~~l~~h~--~~v~~~--~~~~g~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 108 LKSPKVLKGHD--DHVITC--LQFCGNRIVSGSD--DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp CCCCEEEECST--TSCEEE--EEEETTEEEEEET--TSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred cceeEEecccC--CCcEEE--EEEcCCEEEEEEC--CCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence 34556788998 54 565 4557899999966 8999999999999999999999999999998 56899988 9
Q ss_pred EEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccccc
Q 047837 109 YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQ 187 (882)
Q Consensus 109 ~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 187 (882)
+|++||+.+++.+..+..|. ..|.+++|+ ++.|++++. +.|++||+.+++. ...+..|..+
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~--------~~~~~~~~~~------ 241 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHT--STVRCMHLH--EKRVVSGSRDATLRVWDIETGQC--------LHVLMGHVAA------ 241 (445)
T ss_dssp CEEEEETTTTEEEEEECCCS--SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE--------EEEEECCSSC------
T ss_pred eEEEEECCcCcEEEEECCCC--CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE--------EEEEcCCccc------
Confidence 99999999999999999887 899999995 456777764 8999999987654 1112223222
Q ss_pred ccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEe
Q 047837 188 KESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHL 267 (882)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~v 267 (882)
+.+++| ++.+|++|+.||.|++
T Consensus 242 --------------------------------------------------------v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 242 --------------------------------------------------------VRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp --------------------------------------------------------EEEEEE--CSSCEEEEETTSCEEE
T ss_pred --------------------------------------------------------EEEEEE--CCCEEEEEcCCCEEEE
Confidence 266777 7889999999999999
Q ss_pred eecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEccccccccee
Q 047837 268 FDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRC 347 (882)
Q Consensus 268 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~ 347 (882)
||+.+++.+..+. .+...+.++.| ....+++++.|+.|++||+.+++..
T Consensus 264 wd~~~~~~~~~~~---------------------------~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~--- 312 (445)
T 2ovr_B 264 WDPETETCLHTLQ---------------------------GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCI--- 312 (445)
T ss_dssp EEGGGTEEEEEEC---------------------------CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEE---
T ss_pred EECCCCcEeEEec---------------------------CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEE---
Confidence 9999887765543 23445667888 3345777888999999999876432
Q ss_pred eeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceE
Q 047837 348 CVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLV 427 (882)
Q Consensus 348 ~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (882)
..+.+|. ..+.++.+ +++++++++.||.|++||+.+++.+.....
T Consensus 313 ~~~~~~~----------------~~v~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------- 357 (445)
T 2ovr_B 313 HTLTGHQ----------------SLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQG---------------- 357 (445)
T ss_dssp EEECCCC----------------SCEEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEEECS----------------
T ss_pred EEEcCCc----------------ccEEEEEE---eCCEEEEEeCCCeEEEEECCCCcEEEEEcc----------------
Confidence 2344444 44445544 467999999999999999987765432110
Q ss_pred eeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcC
Q 047837 428 SAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVK 507 (882)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~ 507 (882)
...|...|.+++|++ . ++++|+.||.|++||+.
T Consensus 358 --------------------------------~~~~~~~v~~~~~~~--~-------------~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 358 --------------------------------PNKHQSAVTCLQFNK--N-------------FVITSSDDGTVKLWDLK 390 (445)
T ss_dssp --------------------------------TTSCSSCEEEEEECS--S-------------EEEEEETTSEEEEEETT
T ss_pred --------------------------------CCCCCCCEEEEEECC--C-------------EEEEEeCCCeEEEEECC
Confidence 013778899999864 3 89999999999999999
Q ss_pred CCceeEEEe-----ecCCCCEEEEEEccCCCEEEEEeCCCe----EEEEeCcc
Q 047837 508 RNFDLIESI-----DDHSAAVTAVKFTCNGRKILSCSADRS----LVVRDVVE 551 (882)
Q Consensus 508 ~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~~~dg~----i~vwd~~~ 551 (882)
++ +.+..+ ..|...|.+++|+|++.++++++.||+ |.+||+..
T Consensus 391 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CC-ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 87 566666 468899999999999999999999998 99999874
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.5e-34 Score=303.99 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=166.3
Q ss_pred CCCCCcceeeeccCCCcEEEEe--eCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 368 MHDPSVSCVARGCTGGVSFSTC--SADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
.+...+.+++|+ |||++++++ +.|++|++||+.+++.+..
T Consensus 131 ~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~~------------------------------------- 172 (365)
T 4h5i_A 131 NADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKFE------------------------------------- 172 (365)
T ss_dssp CTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEEE-------------------------------------
T ss_pred CcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEEE-------------------------------------
Confidence 345668889999 899987654 4789999999998765432
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeE-EEeecCCCCEE
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLI-ESIDDHSAAVT 524 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~-~~~~~h~~~v~ 524 (882)
+ .|.+.|.+++|+|+++ ++++++.+ .+++|+..++.... .....|...|.
T Consensus 173 --------------~-~~~~~V~~v~fspdg~-------------~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 173 --------------I-ETRGEVKDLHFSTDGK-------------VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp --------------E-ECSSCCCEEEECTTSS-------------EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred --------------e-CCCCceEEEEEccCCc-------------eEEeccce-eEEEEEeccCcceeeeecCCCCCCEE
Confidence 1 4667899999999988 89988865 46667666653333 34557889999
Q ss_pred EEEEccCCCEEEEEeCCC----eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC
Q 047837 525 AVKFTCNGRKILSCSADR----SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG 600 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~ 600 (882)
+++|+|+++++++++.|+ .+++|++...... .........|...|++++|+|||++||+|+.|++|+|||++++
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceec--ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 999999999999999887 6888887744322 2222334456679999999999999999999999999999999
Q ss_pred ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 601 KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 601 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
+++..+. .+|...|++++|||||++||+++.|++|+|||+..
T Consensus 302 ~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 302 SMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9998863 38999999999999999999999999999999964
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.4e-34 Score=310.83 Aligned_cols=206 Identities=17% Similarity=0.155 Sum_probs=133.5
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe---------------ecCCCCEEE
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI---------------DDHSAAVTA 525 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~---------------~~h~~~v~~ 525 (882)
..|...|.+++|+|+++ .++++|+.||.|++||+++.......+ ..|...|.+
T Consensus 183 ~~~~~~v~~~~~~~~~~------------~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 183 QGHRQEILAVSWSPRYD------------YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp CCCCSCEEEEEECSSCT------------TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred cCCCCcEEEEEECCCCC------------cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 35677788888888776 258999999999999998765455555 578899999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRS 605 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 605 (882)
++|+|++++|++++.|+.|++||+.++............ .....+........+..+++++.|+.|++||+.+++.+..
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN-NSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC-CCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc-cccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence 999999999999999999999999976654332221111 1111222223333455677778899999999999999999
Q ss_pred EEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC
Q 047837 606 FKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLP-DCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 606 ~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~i~vwd~~ 684 (882)
+. +|...|++++|+|++++|++++.||.|++||+.+++.+.....+... ..+.+ +...+.+.+.|+.+++|+..
T Consensus 330 ~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 330 LK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred ec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 97 89999999999999999999999999999999999887665433222 22333 33445567789999999865
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-34 Score=314.60 Aligned_cols=253 Identities=17% Similarity=0.143 Sum_probs=197.8
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
+|...|++++|+|.++.+|++++.||+|++||++++..... .
T Consensus 162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~------------------------------------- 203 (435)
T 4e54_B 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF-A------------------------------------- 203 (435)
T ss_dssp SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE-E-------------------------------------
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE-e-------------------------------------
Confidence 47778888899866899999999999999999976432110 0
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
....+...+.+++|++++. +|++|+.||.|++||+.. +.+..+.+|...|.+++
T Consensus 204 -----------~~~~~~~~~~~~~~~~~~~-------------~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 204 -----------SSDTINIWFCSLDVSASSR-------------MVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVA 257 (435)
T ss_dssp -----------CCSSCSCCCCCEEEETTTT-------------EEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEE
T ss_pred -----------ccCCCCccEEEEEECCCCC-------------EEEEEeCCCcEeeeccCc--ceeEEEecccceEEeee
Confidence 0112344567788888887 999999999999999864 45667889999999999
Q ss_pred EccCCC-EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEE
Q 047837 528 FTCNGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 528 ~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 606 (882)
|+|++. +|++++.|+.|++||+++......+. ....|...|++++|+|++.+|++++.|+.|++||+.+++....+
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFL---YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS---BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEE---EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 999876 78899999999999998655433321 22356689999999999999999999999999999999888777
Q ss_pred EeccC----CCCcEEEEECCCCCEEEEEe------------CCCcEEEEEccCCeEEEEEc-cCCCCeEEE-EECCCCCE
Q 047837 607 KQAKD----FGDPMKVTVDPSGSYLVCSY------------SNKSICLYDFISGEMVAKAM-GHGEVITGV-TFLPDCKH 668 (882)
Q Consensus 607 ~~~~~----~~~v~~~~~spdg~~l~~~~------------~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l-~~s~d~~~ 668 (882)
..+.+ ...+..+.|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 52221 11344567788777777664 34579999999999988875 588889888 69999999
Q ss_pred EEEEeCCCeEEEEeCCCCCC
Q 047837 669 IVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 669 l~s~~~dg~i~vwd~~~~~~ 688 (882)
|++++ |+.|+||++++++.
T Consensus 415 lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 415 LASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEEC-SSEEEECCCC----
T ss_pred EEEEc-CCcEEEEECCcCee
Confidence 99876 88999999988764
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-33 Score=306.38 Aligned_cols=297 Identities=14% Similarity=0.152 Sum_probs=241.4
Q ss_pred cCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccc---eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 306 LTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEAT---RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
+..+...+.+++|+| ..+++++.||.|++||+.+.+... ....+. .|...|.+++|+ ++
T Consensus 12 ~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------------~h~~~v~~~~~~-~~ 73 (397)
T 1sq9_A 12 GKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF----------------VHKSGLHHVDVL-QA 73 (397)
T ss_dssp SSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE----------------CCTTCEEEEEEE-EE
T ss_pred hhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEe----------------cCCCcEEEEEEe-cc
Confidence 345667778999999 778888999999999998765111 112222 466677788887 66
Q ss_pred ----C---cEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCC
Q 047837 383 ----G---VSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRG 455 (882)
Q Consensus 383 ----~---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 455 (882)
+ .+|++++.||.|++|++.+++.....
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~---------------------------------------------- 107 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKV---------------------------------------------- 107 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCE----------------------------------------------
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccc----------------------------------------------
Confidence 8 99999999999999999875531000
Q ss_pred CEEEeeec-----cceEEEEEEe----cCCCCCccceeccCCceE-EEEEcCCCcEEEEEcCC------CceeEE-----
Q 047837 456 STLLLDAH-----DAEILSLSFS----LSSKKDDVLEEVTDSHYF-LASGGRDRTIHLYDVKR------NFDLIE----- 514 (882)
Q Consensus 456 ~~~~~~~~-----~~~v~~~~~~----~~~~~~~~~~~~~~~~~~-l~~g~~dg~v~iwd~~~------~~~~~~----- 514 (882)
....+..| ...|.+++|+ |++. + |++++.||.|++||+.+ . ..+.
T Consensus 108 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------------~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~ 173 (397)
T 1sq9_A 108 IFEKLDLLDSDMKKHSFWALKWGASNDRLLS-------------HRLVATDVKGTTYIWKFHPFADESNS-LTLNWSPTL 173 (397)
T ss_dssp EEEEECCSCTTGGGSCEEEEEEECCC----C-------------EEEEEEETTSCEEEEEEESSSSHHHH-TTTCCCCEE
T ss_pred cceeecccccccCCCcEEEEEEeeccCCCCc-------------eEEEEEeCCCcEEEEeCCcccccccc-ceeeccCcc
Confidence 01123455 5889999999 8887 8 99999999999999987 4 3333
Q ss_pred Ee-------ecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceeccc---CCceEEEEEecCCCEEE
Q 047837 515 SI-------DDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS---QGTVYDMDIDPTMEVVI 584 (882)
Q Consensus 515 ~~-------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~ 584 (882)
.+ ..|...|.+++|+|++ +|++++.|+.|++||+++......+... ..| ...|.+++|+|++++|+
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~h~~~~~~i~~i~~~~~~~~l~ 249 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ---HSMINNSNSIRSVKFSPQGSLLA 249 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC---C---CCCCCEEEEEECSSTTEEE
T ss_pred eeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc---ccccccCCccceEEECCCCCEEE
Confidence 55 4488999999999999 9999999999999999876544433220 113 57899999999999999
Q ss_pred EEeCC---CcEEEEEccCCceEEEEEecc-------------CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047837 585 TVGQD---KKINSFSIAAGKLIRSFKQAK-------------DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVA 648 (882)
Q Consensus 585 ~~~~d---~~v~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~ 648 (882)
+++.| +.|++||+.+++.+..+. . |...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 250 ~~~~d~~~g~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 250 IAHDSNSFGCITLYETEFGERIGSLS--VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEEC--BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEecCCCCceEEEEECCCCcccceec--cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 99999 999999999999999887 5 88999999999999999999999999999999999999
Q ss_pred EEc------cC---------------CCCeEEEEECCCC----------CEEEEEeCCCeEEEEeCCCC
Q 047837 649 KAM------GH---------------GEVITGVTFLPDC----------KHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 649 ~~~------~h---------------~~~v~~l~~s~d~----------~~l~s~~~dg~i~vwd~~~~ 686 (882)
.+. +| ...|++++|+|++ ++|++++.||.|++||+.++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999 88 9999999999998 79999999999999998764
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=290.22 Aligned_cols=283 Identities=20% Similarity=0.306 Sum_probs=234.3
Q ss_pred EEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCc
Q 047837 315 ACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGT 394 (882)
Q Consensus 315 ~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~ 394 (882)
.++||+++ +|+++.|++|+|||+.+++... .+.. ..|...|++++|+ +++++|++|+.||+
T Consensus 30 ~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~---~~~~--------------~~~~~~V~~v~~~-~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 30 LVDWSSGN-VLAVALDNSVYLWSASSGDILQ---LLQM--------------EQPGEYISSVAWI-KEGNYLAVGTSSAE 90 (318)
T ss_dssp CEEECTTS-EEEEEETTEEEEEETTTCCEEE---EEEC--------------CSTTCCEEEEEEC-TTSSEEEEEETTSE
T ss_pred EEEECCCC-EEEEEeCCEEEEEECCCCCEEE---EEEe--------------cCCCCeEEEEEEC-CCCCEEEEEECCCc
Confidence 58999987 6666779999999998875432 2221 2466778888888 89999999999999
Q ss_pred EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEec
Q 047837 395 IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSL 474 (882)
Q Consensus 395 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~ 474 (882)
|++|++.+++.+.. +.+|...+.++.+.+
T Consensus 91 v~iw~~~~~~~~~~---------------------------------------------------~~~h~~~~~~~~~~~ 119 (318)
T 4ggc_A 91 VQLWDVQQQKRLRN---------------------------------------------------MTSHSARVGSLSWNS 119 (318)
T ss_dssp EEEEETTTTEEEEE---------------------------------------------------EECCSSCEEEEEEET
T ss_pred EEEeecCCceeEEE---------------------------------------------------ecCccceEEEeecCC
Confidence 99999998775432 346777777665544
Q ss_pred CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcc
Q 047837 475 SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNS 554 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 554 (882)
. ++++++.++.+++|+.......+..+.+|...+..+.+++++++|++++.|+.|++||+.+++.
T Consensus 120 --~-------------~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 120 --Y-------------ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp --T-------------EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred --C-------------EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 3 8999999999999999987778888999999999999999999999999999999999987654
Q ss_pred ceeeeccceecccCCceEEEEEecCCCEE---EEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEe
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDPTMEVV---ITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY 631 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l---~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 631 (882)
..... .....+.+.|.+++++|++..+ ++++.++.|++||.......... .+...+..++|+|++..+++++
T Consensus 185 ~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 185 GWVPL--QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp BSCCS--EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEEETTTTEEEEEE
T ss_pred cccce--eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---cceeeeeeeeecccccceEEEE
Confidence 33221 2223445789999999977633 45667899999999988877766 4677899999999999887654
Q ss_pred --CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 632 --SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 632 --~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
.|+.|+|||+++++++..+.+|.+.|++|+|+|||++|+|++.||+|+|||+.+..
T Consensus 260 g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999997643
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-32 Score=304.80 Aligned_cols=329 Identities=17% Similarity=0.240 Sum_probs=254.1
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeE
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKL 324 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 324 (882)
.++.+ ++++|++|+.||.|++||+.+++.+..+. .+...+.+++|++++.+
T Consensus 126 ~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~---------------------------~h~~~V~~l~~~~~~~l 176 (464)
T 3v7d_B 126 TCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS---------------------------GHDGGVWALKYAHGGIL 176 (464)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEEC---------------------------CCSSCEEEEEECSTTEE
T ss_pred EEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEe---------------------------CCCcCEEEEEEcCCCEE
Confidence 44444 67899999999999999999988765543 35556679999999988
Q ss_pred EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeecc-CCCcEEEEeeCCCcEEEEecCCC
Q 047837 325 VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC-TGGVSFSTCSADGTIRLWDLALQ 403 (882)
Q Consensus 325 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~ 403 (882)
++++.|++|++||+.+++. ...+.+ |...|.+++|++ +++.++++++.||+|++||+.+.
T Consensus 177 ~s~s~dg~i~vwd~~~~~~---~~~~~~----------------h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 237 (464)
T 3v7d_B 177 VSGSTDRTVRVWDIKKGCC---THVFEG----------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237 (464)
T ss_dssp EEEETTSCEEEEETTTTEE---EEEECC----------------CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred EEEeCCCCEEEEECCCCcE---EEEECC----------------CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence 8999999999999987643 223444 555666666654 57789999999999999999876
Q ss_pred ceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCC---CEEEeeeccceEEEEEEecCCCCCc
Q 047837 404 SELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRG---STLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
............ ......+++ ......+|...|.++. +++.
T Consensus 238 ~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~--- 281 (464)
T 3v7d_B 238 SSVPDHGEEHDY-------------------------------PLVFHTPEENPYFVGVLRGHMASVRTVS--GHGN--- 281 (464)
T ss_dssp CCC------CCS-------------------------------SEEESCGGGCTTEEEEECCCSSCEEEEE--EETT---
T ss_pred cccccccccCCc-------------------------------ceEeeccCCCeEEEEEccCccceEEEEc--CCCC---
Confidence 644322111100 000011111 1234567888888874 4455
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeec
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISR 560 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 560 (882)
++++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 282 ----------~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-- 348 (464)
T 3v7d_B 282 ----------IVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-- 348 (464)
T ss_dssp ----------EEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred ----------EEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE--
Confidence 8999999999999999886 788889999999999999999999999999999999999876544433
Q ss_pred cceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 561 RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 561 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
..|...|.+++|+ +.+|++++.|+.|++||+.+++....+. +...+..++|+|++++|++++ ||.|++||
T Consensus 349 ----~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 349 ----QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp ----CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred ----eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 2345789999997 5899999999999999999988776663 667788899999999999998 89999999
Q ss_pred ccCCeEEEE-EccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 641 FISGEMVAK-AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 641 ~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
+++++.+.. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 419 ~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 419 LRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred CCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 999999886 66799999999997 34455555667765544
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-33 Score=287.92 Aligned_cols=250 Identities=17% Similarity=0.210 Sum_probs=207.3
Q ss_pred CCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 366 ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 366 ~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
+.+|...|.+++|+ +++++|++|+.|++|++||+......
T Consensus 5 ~~~h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~--------------------------------------- 44 (297)
T 2pm7_B 5 ANAHNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHK--------------------------------------- 44 (297)
T ss_dssp CCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBC---------------------------------------
T ss_pred ccCCcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcE---------------------------------------
Confidence 35678888888898 89999999999999999998743210
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecC--CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCC
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLS--SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAA 522 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~ 522 (882)
....+.+|.+.|.+++|+++ +. +|++|+.|++|++||+.++. ..+..+.+|...
T Consensus 45 ----------~~~~l~gH~~~V~~v~~s~~~~g~-------------~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~ 101 (297)
T 2pm7_B 45 ----------LIDTLTGHEGPVWRVDWAHPKFGT-------------ILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS 101 (297)
T ss_dssp ----------CCEEECCCSSCEEEEEECCGGGCS-------------EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC
T ss_pred ----------EEEEEccccCCeEEEEecCCCcCC-------------EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc
Confidence 01235689999999999864 55 89999999999999998752 356677889999
Q ss_pred EEEEEEccC--CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC-------------CCEEEEEe
Q 047837 523 VTAVKFTCN--GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT-------------MEVVITVG 587 (882)
Q Consensus 523 v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-------------~~~l~~~~ 587 (882)
|.+++|+|+ +.+|++++.|+.|++||++....... .....|...|.+++|+|+ +++|++++
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs 177 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC----EEEECCSSCEEEEEECCCC------------CCEEEEEE
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee----eeeecccCccceEeecCCcccccccCCCCCCcceEEEEc
Confidence 999999997 89999999999999999986532211 122345679999999997 57999999
Q ss_pred CCCcEEEEEccCCc----eEEEEEeccCCCCcEEEEECCCC---CEEEEEeCCCcEEEEEccCCe---EEEEE--ccCCC
Q 047837 588 QDKKINSFSIAAGK----LIRSFKQAKDFGDPMKVTVDPSG---SYLVCSYSNKSICLYDFISGE---MVAKA--MGHGE 655 (882)
Q Consensus 588 ~d~~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~dg~i~iwd~~~~~---~~~~~--~~h~~ 655 (882)
.|++|++||+++++ ....+. +|...|.+++|+|++ ++||+++.|++|+|||+++++ ....+ ..|..
T Consensus 178 ~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 178 ADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255 (297)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred CCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC
Confidence 99999999998876 455665 899999999999985 899999999999999998742 22233 46889
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 656 VITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 656 ~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.|.+++|+|++++|++++.|+.|++|+..
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999999999999999999999975
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.3e-33 Score=298.31 Aligned_cols=252 Identities=15% Similarity=0.130 Sum_probs=204.0
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.+++|+ +++++|++++.||.|++||+.+++....
T Consensus 51 h~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------------------------------------- 89 (372)
T 1k8k_C 51 HNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPT---------------------------------------- 89 (372)
T ss_dssp CSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTEEEEE----------------------------------------
T ss_pred CCCcccEEEEe-CCCCEEEEEcCCCeEEEEECCCCeeeee----------------------------------------
Confidence 55667777787 7899999999999999999977653211
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce---eEEEeecCCCCEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD---LIESIDDHSAAVTA 525 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~---~~~~~~~h~~~v~~ 525 (882)
.....|...|.+++|+|+++ ++++++.|+.|++||+..... .......|...|.+
T Consensus 90 ---------~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 90 ---------LVILRINRAARCVRWAPNEK-------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp ---------EECCCCSSCEEEEEECTTSS-------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred ---------EEeecCCCceeEEEECCCCC-------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 12346788899999999988 999999999999999987532 23334678999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccce------------eeeccceecccCCceEEEEEecCCCEEEEEeCCCcEE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAY------------KISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKIN 593 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~ 593 (882)
++|+|++++|++++.|+.|++||+....... ..........|...|.+++|+|++++|++++.|+.|+
T Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 148 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 9999999999999999999999975211000 0000011124567899999999999999999999999
Q ss_pred EEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC--CeE-------------------------
Q 047837 594 SFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS--GEM------------------------- 646 (882)
Q Consensus 594 iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~--~~~------------------------- 646 (882)
+||+++++.+..+. .|...+.+++|+|++++|+++ .|+.|++||+.+ ++.
T Consensus 228 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (372)
T 1k8k_C 228 LADADKKMAVATLA--SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 304 (372)
T ss_dssp EEEGGGTTEEEEEE--CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred EEECCCCceeEEEc--cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence 99999999999998 788899999999999999988 899999999988 531
Q ss_pred -------E------EEE-ccCCCCeEEEEEC-CCC---CEEEEEeCCCeEEEEeCCCC
Q 047837 647 -------V------AKA-MGHGEVITGVTFL-PDC---KHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 647 -------~------~~~-~~h~~~v~~l~~s-~d~---~~l~s~~~dg~i~vwd~~~~ 686 (882)
. ..+ .+|...|++++|. ++| ++|+|++.||.|++||+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0 223 4899999999966 677 99999999999999998654
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-32 Score=319.91 Aligned_cols=161 Identities=15% Similarity=0.261 Sum_probs=131.3
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD 541 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 541 (882)
+|...|.+++|+|++. ...+++|+.|+.|++||+.+. .....+.+|...|.+++|+|++++|++++.|
T Consensus 515 ~h~~~v~~~~~~~~~~-----------~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTL-----------QPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCSSCEEEEEECSCSS-----------SCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEEEeCCCC-----------cceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 3555677777777652 127999999999999999876 7788899999999999999999999999999
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc-----------
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK----------- 610 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----------- 610 (882)
+.|++||+.++.....+ .+...+.+++|+|++.++++++ ++.|++||+++++.+..+..+.
T Consensus 583 g~i~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSL-------EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654 (694)
T ss_dssp SBCEEEETTTTEEEECC-------BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------
T ss_pred CeEEEEECCCCceEEEe-------cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccc
Confidence 99999999876544332 2235799999999998888765 5669999999999888775211
Q ss_pred ------CCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 611 ------DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 611 ------~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
+...+++++|+|||++|++|+.||.|+|||+.
T Consensus 655 ~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 11236889999999999999999999999985
No 73
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=8.3e-32 Score=328.97 Aligned_cols=482 Identities=12% Similarity=0.091 Sum_probs=335.6
Q ss_pred CccccCCCCCeEEEeec-------eEEEEEECCCCceEEEEEecCCCCCe-------EEEEEcCCCCEEEEeecC----C
Q 047837 5 HNIKKPDSSSKCAYVAG-------CVLVVYDVDSSTQSHLMVSHRMPKPL-------CCVAMSRDGRYVAAGESG----P 66 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~-------~~v~vwd~~~~~~~~~l~~h~~~~~I-------~~va~spdg~~la~g~~~----~ 66 (882)
.++|+|||+ .++|.+. ..|.+||+.+++. +.+..|. ..+ .+++|||||++++++..+ .
T Consensus 57 ~~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt~~~--~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~ 132 (1045)
T 1k32_A 57 NARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEI-KRITYFS--GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 132 (1045)
T ss_dssp EEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEE-EECCCCC--EEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred CeEECCCCC-EEEEEEeeccCCCCCeEEEEECCCCCe-EEcccCC--CcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence 578999987 7777643 3899999998874 5667887 677 999999999977777532 2
Q ss_pred CCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc--------------CEEEEEEcCcceeeeeeecCCcccc
Q 047837 67 QPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG--------------GYIYLWNWRSAMLVMKLKANSSCSA 132 (882)
Q Consensus 67 d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--------------~~i~iWd~~~g~~~~~~~~~~~~~~ 132 (882)
...|.+||+.+++... +..+. ...++||| | +|+++. ....||....+.....+..|. ..
T Consensus 133 ~~~l~~~~~~~g~~~~-l~~~~--~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~--~~ 205 (1045)
T 1k32_A 133 MTCLYRVENDGINFVP-LNLGP--ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS--TH 205 (1045)
T ss_dssp CCEEEEEEGGGTEEEE-CCSCS--CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS--SC
T ss_pred cceEEEEECCCCCeEE-ecCCC--cceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC--Cc
Confidence 3568899998887643 33332 35678999 8 888752 346677544444455566655 89
Q ss_pred eeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCccccccc
Q 047837 133 ITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQA 211 (882)
Q Consensus 133 v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (882)
+.++.|+++ .++++++. +.+.+|.+...... . ..+..+.
T Consensus 206 v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~-~------~~l~~~~-------------------------------- 245 (1045)
T 1k32_A 206 VSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD-L------RKHTSFT-------------------------------- 245 (1045)
T ss_dssp CEEEEEETT-EEEEEECTTSSCEEEEEETTSCS-C------EECCCCC--------------------------------
T ss_pred ccceEEeCC-EEEEEEeccCceEEEEEeCCCCc-c------eEecCCC--------------------------------
Confidence 999999998 55555554 78889987532110 0 0011111
Q ss_pred CceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCC
Q 047837 212 GESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGEN 291 (882)
Q Consensus 212 ~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 291 (882)
.+...+|+|||++|+.+ .++.|.+|++...+ +..+. ++.
T Consensus 246 -------------------------------~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~--------~~~ 284 (1045)
T 1k32_A 246 -------------------------------DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIE--------IGD 284 (1045)
T ss_dssp -------------------------------SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECC--------CCC
T ss_pred -------------------------------CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeec--------cCc
Confidence 01456899999999888 48999999984332 22221 100
Q ss_pred ccccchhhhccccccCCCCCCcEEEeec-CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCC
Q 047837 292 DTVSTAKATELYFKLTPTIPNAIACQFS-TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHD 370 (882)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~ 370 (882)
... ......+...+..++|+ |||+.++...++.|++|++..+... .+..|..
T Consensus 285 ~~~--------~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~----~~~~~~~--------------- 337 (1045)
T 1k32_A 285 LES--------PEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL----KVPEPLR--------------- 337 (1045)
T ss_dssp CCB--------CCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE----ECSCCSC---------------
T ss_pred ccc--------cccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE----EccCCCc---------------
Confidence 000 00000122345689999 9998666666999999998765321 2223322
Q ss_pred CCcceeeeccCCCcEEEEeeCCCcEE-EEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 371 PSVSCVARGCTGGVSFSTCSADGTIR-LWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 371 ~~v~~~~~~~~~~~~l~t~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
..+..++|+ +++.|++++.++.+. +|++.+++..
T Consensus 338 ~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~------------------------------------------- 372 (1045)
T 1k32_A 338 IRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAE------------------------------------------- 372 (1045)
T ss_dssp EEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEE-------------------------------------------
T ss_pred ceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCce-------------------------------------------
Confidence 145566666 888899888888888 8898765421
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEc
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFT 529 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s 529 (882)
.+..|...+..++|+|+++ +|++++.++.|++||+.++ +......+|...+..++|+
T Consensus 373 ---------~l~~~~~~~~~~~~SpDG~-------------~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 373 ---------KFEENLGNVFAMGVDRNGK-------------FAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp ---------ECCCCCCSEEEEEECTTSS-------------EEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEEC
T ss_pred ---------EecCCccceeeeEECCCCC-------------EEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEEC
Confidence 1224566788888888888 8999999999999999876 5666666899999999999
Q ss_pred cCCCEEEEEeCCC----------eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC
Q 047837 530 CNGRKILSCSADR----------SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA 599 (882)
Q Consensus 530 ~~~~~l~s~~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~ 599 (882)
|||++|++++.++ .|++||+.++. ...+ ..+...+..++|+|||++|+.++.++...+|+...
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l------~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe------eCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 9999999887654 89999998654 2222 22335788899999999999999887777776533
Q ss_pred Cce-------------------------------------------EEEEEeccCCCCcEEEEECCCCCEEEE-------
Q 047837 600 GKL-------------------------------------------IRSFKQAKDFGDPMKVTVDPSGSYLVC------- 629 (882)
Q Consensus 600 ~~~-------------------------------------------~~~~~~~~~~~~v~~~~~spdg~~l~~------- 629 (882)
... +..+ ..+.+.+..++++|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l--~~~~~~~~~~~~s~dg~~~~~~~~~g~~ 580 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI--NVDPGDYRMIIPLESSILIYSVPVHGEF 580 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEEC--SCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEc--CCCCCChhheEEcCCCeEEEEecccCcc
Confidence 221 1111 134567889999999988875
Q ss_pred ------EeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 630 ------SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 630 ------~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
......|++||+.+++... +. ..+..++|||||++|++++.| .|++||+....
T Consensus 581 ~~~~~~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 581 AAYYQGAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHHHCCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1234578999998887533 32 568899999999999999876 79999998765
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=297.63 Aligned_cols=290 Identities=13% Similarity=0.223 Sum_probs=233.2
Q ss_pred CCCCCcEEEeecCCC-eEEEEe----CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 308 PTIPNAIACQFSTSE-KLVVVY----GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~-~ll~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
++...+.+++|+|++ .+++++ .|+.|++||+.+++.... ... .|...|.+++|+ ++
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~----------------~~~~~v~~~~~~-~~ 76 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REI----------------EKAKPIKCGTFG-AT 76 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEE----------------EESSCEEEEECT-TC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eee----------------cccCcEEEEEEc-CC
Confidence 356678899999998 465555 289999999987643211 111 356677778887 55
Q ss_pred ---CcEEEEeeCCCcEEEEecCCCc-eeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEE
Q 047837 383 ---GVSFSTCSADGTIRLWDLALQS-ELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTL 458 (882)
Q Consensus 383 ---~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 458 (882)
+.+|++++.||.|++||+.+++ .+ .
T Consensus 77 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------------------------------~ 105 (357)
T 3i2n_A 77 SLQQRYLATGDFGGNLHIWNLEAPEMPV---------------------------------------------------Y 105 (357)
T ss_dssp CTTTCCEEEEETTSCEEEECTTSCSSCS---------------------------------------------------E
T ss_pred CCCCceEEEecCCCeEEEEeCCCCCccE---------------------------------------------------E
Confidence 7999999999999999998765 22 1
Q ss_pred EeeeccceEEEEEEe------cCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCC----CEEEEE-
Q 047837 459 LLDAHDAEILSLSFS------LSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSA----AVTAVK- 527 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~------~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~----~v~~~~- 527 (882)
.+.+|...|.+++|. ++++ +|++++.|+.|++||+.++...+..+..|.. .+.+++
T Consensus 106 ~~~~~~~~v~~~~~~~~~~~s~~~~-------------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 106 SVKGHKEIINAIDGIGGLGIGEGAP-------------EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp EECCCSSCEEEEEEESGGGCC-CCC-------------EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred EEEecccceEEEeeccccccCCCcc-------------EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence 345788899999664 5555 8999999999999999987446777766554 899998
Q ss_pred ---EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec---CCCEEEEEeCCCcEEEEEccCCc
Q 047837 528 ---FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP---TMEVVITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 528 ---~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~ 601 (882)
|+|++++|++++.|+.|++||+++...... ..+...|.+++|+| ++.+|++++.|+.|++||+++++
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred EeccCCCCCEEEEEccCCeEEEEECccCceeee-------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 788999999999999999999987654221 23457899999999 99999999999999999999876
Q ss_pred eEEEEE---eccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEEccCC-------------------eEEEEEccCCCCeE
Q 047837 602 LIRSFK---QAKDFGDPMKVTVDPSGS-YLVCSYSNKSICLYDFISG-------------------EMVAKAMGHGEVIT 658 (882)
Q Consensus 602 ~~~~~~---~~~~~~~v~~~~~spdg~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~ 658 (882)
.+..+. ...|...|++++|+|+++ +|++++.||.|++||++++ +.+..+.+|...|+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 554442 227899999999999998 8999999999999999854 46788899999999
Q ss_pred EEEECCCCCEEE-EEeCCCeEEEEeCCCCC
Q 047837 659 GVTFLPDCKHIV-SVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 659 ~l~~s~d~~~l~-s~~~dg~i~vwd~~~~~ 687 (882)
+++|+|++++|+ +++.|+.|++||+....
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999999999998 89999999999997654
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-32 Score=320.39 Aligned_cols=288 Identities=23% Similarity=0.286 Sum_probs=235.7
Q ss_pred ccCCCCCCcEEEeecCCC-e-EEEEeCCceEEEEEcccccccc--eeeeeecCcceeeeecccCCCCCCCCCcceeeecc
Q 047837 305 KLTPTIPNAIACQFSTSE-K-LVVVYGDHSLYVWDIHDVNEAT--RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC 380 (882)
Q Consensus 305 ~~~~~~~~~~~~~~s~~~-~-ll~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~ 380 (882)
.+..|...|.+++|++++ . +++++.|++|++|++....... ....+ .+|...|.+++|+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~----------------~~h~~~v~~v~~s- 439 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL----------------TGHSHFVEDVVLS- 439 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE----------------ECCSSCEEEEEEC-
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee----------------cCCCCcEEEEEEC-
Confidence 456788999999999875 3 6678889999999997643221 11223 3466677778887
Q ss_pred CCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEe
Q 047837 381 TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLL 460 (882)
Q Consensus 381 ~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 460 (882)
+++++|++|+.||+|++||+.++.... .+
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---------------------------------------------------~~ 468 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---------------------------------------------------RF 468 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---------------------------------------------------EE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---------------------------------------------------EE
Confidence 899999999999999999998765432 25
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe---ecCCCCEEEEEEccCC--CEE
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI---DDHSAAVTAVKFTCNG--RKI 535 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~---~~h~~~v~~~~~s~~~--~~l 535 (882)
.+|...|.+++|+|++. +|++|+.|++|++||.... ...... .+|...|.+++|+|++ ..|
T Consensus 469 ~~h~~~v~~~~~s~~~~-------------~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 469 VGHTKDVLSVAFSLDNR-------------QIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp ECCSSCEEEEEECTTSS-------------CEEEEETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred eCCCCCEEEEEEeCCCC-------------EEEEEeCCCEEEEEECCCC-cceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 58999999999999988 8999999999999998654 222222 4688999999999986 689
Q ss_pred EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCc
Q 047837 536 LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDP 615 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v 615 (882)
++++.|++|++||+.+......+ ..|.+.|++++|+|++++|++++.|+.|++||+.+++.+..+. +...+
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~------~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---~~~~v 605 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTL------AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE---ANSVI 605 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---CSSCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---CCCcE
Confidence 99999999999999865433222 3456899999999999999999999999999999999887775 45689
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC-------------------CCeEEEEECCCCCEEEEEeCCC
Q 047837 616 MKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG-------------------EVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 616 ~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~l~~s~d~~~l~s~~~dg 676 (882)
.+++|+|++.+|++++ ++.|+|||+++++.+..+..+. ..+++++|+|||++|++++.||
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9999999999998876 5569999999999888775432 1378999999999999999999
Q ss_pred eEEEEeCC
Q 047837 677 LQRVKEKY 684 (882)
Q Consensus 677 ~i~vwd~~ 684 (882)
.|++|++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999985
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-32 Score=296.20 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=233.2
Q ss_pred cEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC
Q 047837 313 AIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD 392 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d 392 (882)
+.++.|++ +.+++++.|+.|++||+.+++... .+. ..|...|.+++|+ +++.+|++++.|
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~---~~~---------------~~~~~~v~~v~~s-~~~~~l~~~~~d 155 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERNVYVWNADSGSVSA---LAE---------------TDESTYVASVKWS-HDGSFLSVGLGN 155 (401)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTCCEEE---EEE---------------CCTTCCEEEEEEC-TTSSEEEEEETT
T ss_pred EEEEeecC-CCEEEEECCCeEEEeeCCCCcEeE---eee---------------cCCCCCEEEEEEC-CCCCEEEEECCC
Confidence 34567775 568888999999999998765322 111 1256778888888 799999999999
Q ss_pred CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE
Q 047837 393 GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF 472 (882)
Q Consensus 393 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~ 472 (882)
|.|++||+.+++.+. .+.+|...|.+++|
T Consensus 156 g~i~iwd~~~~~~~~---------------------------------------------------~~~~~~~~v~~~~~ 184 (401)
T 4aez_A 156 GLVDIYDVESQTKLR---------------------------------------------------TMAGHQARVGCLSW 184 (401)
T ss_dssp SCEEEEETTTCCEEE---------------------------------------------------EECCCSSCEEEEEE
T ss_pred CeEEEEECcCCeEEE---------------------------------------------------EecCCCCceEEEEE
Confidence 999999998765432 24578899999999
Q ss_pred ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccC
Q 047837 473 SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVET 552 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~ 552 (882)
++ . ++++|+.||.|++||+.........+.+|...|.+++|+|++++|++++.|+.|++||+.+.
T Consensus 185 ~~--~-------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 185 NR--H-------------VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp ET--T-------------EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred CC--C-------------EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence 54 3 89999999999999999655778889999999999999999999999999999999999875
Q ss_pred ccceeeeccceecccCCceEEEEEecCCC-EEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEE
Q 047837 553 NSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
.....+ ..|...|.+++|+|++. ++++++ .|+.|++||+.+++.+..+. +...+.+++|+|++++|++
T Consensus 250 ~~~~~~------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 250 IPKFTK------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp SEEEEE------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEE
T ss_pred CccEEe------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEE
Confidence 544333 23457899999999775 566654 79999999999999998885 5678999999999999999
Q ss_pred --EeCCCcEEEEEccCCeEEE--EEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcc
Q 047837 630 --SYSNKSICLYDFISGEMVA--KAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRN 691 (882)
Q Consensus 630 --~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~ 691 (882)
|+.||.|++||+.+++... .+.+|...|.+++|+|++++|++++.||.|++||+.++.....
T Consensus 321 ~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred EeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 4489999999999976544 4678999999999999999999999999999999988765543
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-32 Score=283.31 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=236.5
Q ss_pred cCCCCCCcEEEeecCCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc
Q 047837 306 LTPTIPNAIACQFSTSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV 384 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~ 384 (882)
+..+...+.+++| +++ .+++++.||.|++||+.+.... ..+.. |...|.+++|+ ++++
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~---~~~~~----------------~~~~v~~~~~~-~~~~ 72 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG---TVVYT----------------GQGFLNSVCYD-SEKE 72 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE---EEEEE----------------CSSCEEEEEEE-TTTT
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE---EEeec----------------CCccEEEEEEC-CCCC
Confidence 3456667789999 665 5777888999999999765322 22333 56677778887 7999
Q ss_pred EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc
Q 047837 385 SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD 464 (882)
Q Consensus 385 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 464 (882)
+|++++.||.|++|++....... ....+..|.
T Consensus 73 ~l~~~~~dg~i~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 104 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLFATSGED------------------------------------------------PLYTLIGHQ 104 (313)
T ss_dssp EEEEEETTSCEEEEETTCCTTSC------------------------------------------------C-CEECCCS
T ss_pred EEEEecCCCeEEEEEeeecCCCC------------------------------------------------cccchhhcc
Confidence 99999999999999997643211 112345788
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCe
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRS 543 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~ 543 (882)
..|.+++|. +. ++++++.|+.|++|| .. .....+..|...+.+++|+| ++.++++++.|+.
T Consensus 105 ~~i~~~~~~--~~-------------~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 105 GNVCSLSFQ--DG-------------VVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166 (313)
T ss_dssp SCEEEEEEE--TT-------------EEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred cCEEEEEec--CC-------------EEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEEECCCC
Confidence 999999994 34 899999999999999 33 67788889999999999999 9999999999999
Q ss_pred EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCC
Q 047837 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPS 623 (882)
Q Consensus 544 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spd 623 (882)
|++||.. .....+.. .+...+.+++|+|++. +++++.|+.|++||+++++.+..+. .|...+++++|+|+
T Consensus 167 i~i~d~~--~~~~~~~~-----~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 167 IKLWQND--KVIKTFSG-----IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHESFVYCIKLLPN 236 (313)
T ss_dssp EEEEETT--EEEEEECS-----SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTT
T ss_pred EEEEecC--ceEEEEec-----cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCceEEEEEEecC
Confidence 9999943 22222211 2457899999999998 9999999999999999999999998 89999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 624 GSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 624 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
+ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++ |++++.||.|++||+.+.......
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9 588999999999999999999999999999999999999998 667999999999999876655443
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-32 Score=298.20 Aligned_cols=314 Identities=13% Similarity=0.180 Sum_probs=232.3
Q ss_pred EEECCCCceEEEEEecCCCCCeEEEEEcCCC-CEEEEeecCCCCeEEEEECCCceeeEEee--ccccceeEEEECC-CCC
Q 047837 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDG-RYVAAGESGPQPAVLVWDCANLAFISELK--GHLYGVECIAFSP-DGE 101 (882)
Q Consensus 26 vwd~~~~~~~~~l~~h~~~~~I~~va~spdg-~~la~g~~~~d~~I~vwd~~t~~~~~~l~--~h~~~V~~lafsp-dg~ 101 (882)
+|++...+....+.+|. ..|.+++|+|++ ++||+|+. |+.|+|||+.+++....+. +|...|.+++|+| +++
T Consensus 57 ~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD--RRVTSLEWHPTHPTTVAVGSK--GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp HHHHTTCEEEEEECCCS--SCEEEEEECSSCTTEEEEEEB--TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred cccccccceEEeccCCC--CCEEEEEECCCCCCEEEEEcC--CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC
Confidence 34456667778888998 899999999999 99999976 8899999999988877775 6999999999999 789
Q ss_pred EEEEEc--CEEEEEEcCcceeeeeeecC-CcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceee
Q 047837 102 HLVTVG--GYIYLWNWRSAMLVMKLKAN-SSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTL 177 (882)
Q Consensus 102 ~Las~~--~~i~iWd~~~g~~~~~~~~~-~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 177 (882)
+|++++ +.|++||+.+ ..+..+..+ .+...|.+++|+|++++|++++. +.|++||+.. .. ...+..
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~--------~~~~~~ 202 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-HE--------IFKEKL 202 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-CE--------EEEEEC
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-CE--------EEEecc
Confidence 999998 9999999986 444444433 23477999999999999999986 8999999842 22 111222
Q ss_pred cCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCC-EE
Q 047837 178 HAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSK-LI 256 (882)
Q Consensus 178 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l 256 (882)
|... +.+++|+|+++ +|
T Consensus 203 h~~~--------------------------------------------------------------v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 203 HKAK--------------------------------------------------------------VTHAEFNPRCDWLM 220 (383)
T ss_dssp SSSC--------------------------------------------------------------EEEEEECSSCTTEE
T ss_pred CCCc--------------------------------------------------------------EEEEEECCCCCCEE
Confidence 3322 38899999999 89
Q ss_pred EEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEE
Q 047837 257 ACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVW 336 (882)
Q Consensus 257 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iw 336 (882)
++++.|+.|++||+.+++....+.
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~-------------------------------------------------------- 244 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYI-------------------------------------------------------- 244 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEE--------------------------------------------------------
T ss_pred EEEeCCCEEEEEeCCCCCcccceE--------------------------------------------------------
Confidence 999999999999988643211100
Q ss_pred EcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccC-CCcEEEEeeCCCcEEEEecCCCceeeecccCCcc
Q 047837 337 DIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCT-GGVSFSTCSADGTIRLWDLALQSELSKDVLGHES 415 (882)
Q Consensus 337 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 415 (882)
..+ + |...|.+++|+ + ++.+|++++.|+.|++||+.+++...........
T Consensus 245 -----------~~~-~----------------~~~~v~~~~~s-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 245 -----------AEM-P----------------HEKPVNAAYFN-PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp -----------EEE-E----------------CSSCEEEEEEC-TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred -----------EEe-c----------------CCCceEEEEEc-CCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 001 1 45566777777 6 8889999999999999999877654332110000
Q ss_pred ceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEE
Q 047837 416 LNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASG 495 (882)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g 495 (882)
.......+. ..++|+ +.+..++|+|+++ + +|
T Consensus 296 -----------------------~~~~~~~~~-~~~~p~----------~~~~~~~~s~dg~-------------~--s~ 326 (383)
T 3ei3_B 296 -----------------------QFQHLTPIK-ATWHPM----------YDLIVAGRYPDDQ-------------L--LL 326 (383)
T ss_dssp -----------------------CCTTSCCCC-CEECSS----------SSEEEEECBCCTT-------------T--CT
T ss_pred -----------------------ccccccceE-EeccCC----------CCceEEEecCCcc-------------c--cc
Confidence 000001111 133333 3345567777776 4 89
Q ss_pred cCCCcEEEEEcCCCceeEEEeec--CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCcc
Q 047837 496 GRDRTIHLYDVKRNFDLIESIDD--HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVE 551 (882)
Q Consensus 496 ~~dg~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~ 551 (882)
+.|+.|++||+.++ +.+..+.+ |...+..++|+|++++|++++ |+.|++||+++
T Consensus 327 s~d~~i~iwd~~~~-~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDANSG-GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETTTC-CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCeEEEEecCCC-ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999999999887 67777876 567788889999999999997 99999999873
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-32 Score=298.49 Aligned_cols=316 Identities=19% Similarity=0.211 Sum_probs=235.0
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce------eeEEeeccccceeEEEECCC----C---C
Q 047837 35 SHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA------FISELKGHLYGVECIAFSPD----G---E 101 (882)
Q Consensus 35 ~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~------~~~~l~~h~~~V~~lafspd----g---~ 101 (882)
...+.+|. +.|++++|+| ++||+|+. |+.|+|||+.+++ .+..+.+|...|.+++|+|+ | +
T Consensus 9 ~~~~~~h~--~~i~~~~~~~--~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 9 ANAGKAHD--ADIFSVSACN--SFTVSCSG--DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEESSCSS--SCEEEEEECS--SEEEEEET--TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhh--cCeEEEEecC--CeEEEEcC--CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 34566888 8999999999 79999965 8999999999988 78899999999999999999 9 9
Q ss_pred EEEEEc--CEEEEEEcCccee-----eeeeecCCc---ccceeEEEEc----cCCCE-EEEECC-CcEEEEEccc-----
Q 047837 102 HLVTVG--GYIYLWNWRSAML-----VMKLKANSS---CSAITSACFS----SDAKF-IVTAGK-KHLKFWTIGS----- 160 (882)
Q Consensus 102 ~Las~~--~~i~iWd~~~g~~-----~~~~~~~~~---~~~v~~l~fs----~d~~~-l~~~~~-~~i~iwd~~~----- 160 (882)
+|++++ +.|++||+.+++. +..+..+.. ...|.+++|+ |++++ |++++. +.|++||+..
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 999998 9999999999987 788877721 2899999999 99999 888865 8999999987
Q ss_pred -CccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 161 -SATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
+.... ......+... ......
T Consensus 163 ~~~~~~---~~~~~~~~~~-------------------------------------------------------~~~~~~ 184 (397)
T 1sq9_A 163 NSLTLN---WSPTLELQGT-------------------------------------------------------VESPMT 184 (397)
T ss_dssp HHTTTC---CCCEEEEEEE-------------------------------------------------------ECCSSS
T ss_pred ccceee---ccCcceeeee-------------------------------------------------------eccccC
Confidence 33210 0000011000 000000
Q ss_pred eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeec
Q 047837 240 DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFS 319 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 319 (882)
+...+.+++|+|++ +|++++.||.|++||+.+++.+..+
T Consensus 185 ~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------------- 223 (397)
T 1sq9_A 185 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF---------------------------------------- 223 (397)
T ss_dssp SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE----------------------------------------
Confidence 12233788889988 8888888888988888765433221
Q ss_pred CCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCC---CCCcceeeeccCCCcEEEEeeCC---C
Q 047837 320 TSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMH---DPSVSCVARGCTGGVSFSTCSAD---G 393 (882)
Q Consensus 320 ~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h---~~~v~~~~~~~~~~~~l~t~~~d---g 393 (882)
.. ...| ...|.+++|+ +++.+|++++.| |
T Consensus 224 -------------------------------~~-------------~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g 258 (397)
T 1sq9_A 224 -------------------------------ES-------------QHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFG 258 (397)
T ss_dssp -------------------------------EC-------------CC---CCCCCEEEEEEC-SSTTEEEEEEEETTEE
T ss_pred -------------------------------ec-------------cccccccCCccceEEEC-CCCCEEEEEecCCCCc
Confidence 11 0114 5667778887 789999999999 9
Q ss_pred cEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEe
Q 047837 394 TIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFS 473 (882)
Q Consensus 394 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~ 473 (882)
.|++||+.+++.+....... .+.........|...|.+++|+
T Consensus 259 ~i~i~d~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 259 CITLYETEFGERIGSLSVPT--------------------------------------HSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp EEEEEETTTCCEEEEECBC----------------------------------------------CCBSBSSCEEEEEEC
T ss_pred eEEEEECCCCcccceeccCc--------------------------------------ccccccccccccCCcEEEEEEC
Confidence 99999998776543211000 0000000011388999999999
Q ss_pred cCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee------cC---------------CCCEEEEEEccCC
Q 047837 474 LSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID------DH---------------SAAVTAVKFTCNG 532 (882)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~------~h---------------~~~v~~~~~s~~~ 532 (882)
|+++ +|++++.|+.|++||+.++ +.+..+. +| ...|.+++|+|++
T Consensus 301 ~~~~-------------~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 301 DSGE-------------TLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp SSSS-------------EEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred CCCC-------------EEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 9988 9999999999999999887 7788888 78 9999999999998
Q ss_pred ----------CEEEEEeCCCeEEEEeCccC
Q 047837 533 ----------RKILSCSADRSLVVRDVVET 552 (882)
Q Consensus 533 ----------~~l~s~~~dg~i~vwd~~~~ 552 (882)
++|++++.||.|++|++.++
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998754
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=293.77 Aligned_cols=308 Identities=14% Similarity=0.166 Sum_probs=230.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEE-EEeecC-CCCeEEEEECCCceeeEEee-ccccceeEEEECCC---CCEEEEEc--
Q 047837 36 HLMVSHRMPKPLCCVAMSRDGRYV-AAGESG-PQPAVLVWDCANLAFISELK-GHLYGVECIAFSPD---GEHLVTVG-- 107 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spdg~~l-a~g~~~-~d~~I~vwd~~t~~~~~~l~-~h~~~V~~lafspd---g~~Las~~-- 107 (882)
+.+.+|. ..|.+++|+|++..+ ++|+.+ .|+.|+|||+.+++...... +|...|.+++|+|+ |++|++++
T Consensus 12 ~~~~~h~--~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFN--YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECS--SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhccCCC--CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4567888 899999999999654 555321 38899999999988765543 69999999999998 79999998
Q ss_pred CEEEEEEcCcce-eeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccc
Q 047837 108 GYIYLWNWRSAM-LVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGI 186 (882)
Q Consensus 108 ~~i~iWd~~~g~-~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 186 (882)
+.|++||+.+++ .+..+..|. ..|.+++|.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~---------------------------------------------- 121 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIG---------------------------------------------- 121 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCS--SCEEEEEEES----------------------------------------------
T ss_pred CeEEEEeCCCCCccEEEEEecc--cceEEEeecc----------------------------------------------
Confidence 999999999988 777777766 7777776532
Q ss_pred cccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEE
Q 047837 187 QKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVH 266 (882)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~ 266 (882)
.++|+|++++|++++.||.|+
T Consensus 122 -----------------------------------------------------------~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 122 -----------------------------------------------------------GLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp -----------------------------------------------------------GGGCC-CCCEEEEEETTSCEE
T ss_pred -----------------------------------------------------------ccccCCCccEEEEEeCCCeEE
Confidence 235677888888888888888
Q ss_pred eeecccce-ecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccc
Q 047837 267 LFDIQSLK-HAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 267 vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~ 345 (882)
+||+.+++ ....+.
T Consensus 143 vwd~~~~~~~~~~~~----------------------------------------------------------------- 157 (357)
T 3i2n_A 143 VWDPRQKDDPVANME----------------------------------------------------------------- 157 (357)
T ss_dssp EECTTSCSSCSEEEC-----------------------------------------------------------------
T ss_pred EEeCCCCCCcceecc-----------------------------------------------------------------
Confidence 88887654 111110
Q ss_pred eeeeeecCcceeeeecccCCCCCCCCCcceee----eccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeec
Q 047837 346 RCCVLVSHSACIWDIKNLGCENMHDPSVSCVA----RGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPM 421 (882)
Q Consensus 346 ~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~----~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 421 (882)
.|.+ .+...|.+++ |+ +++.+|++++.||.|++||+.+++..
T Consensus 158 ------~~~~------------~~~~~v~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~--------------- 203 (357)
T 3i2n_A 158 ------PVQG------------ENKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLRNMALR--------------- 203 (357)
T ss_dssp ------CCTT------------SCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEE---------------
T ss_pred ------ccCC------------CCCCceEEEEEEeccC-CCCCEEEEEccCCeEEEEECccCcee---------------
Confidence 0000 0112333333 44 78999999999999999999876532
Q ss_pred CCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEec---CCCCCccceeccCCceEEEEEcCC
Q 047837 422 STAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSL---SSKKDDVLEEVTDSHYFLASGGRD 498 (882)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~~d 498 (882)
....|...|.+++|+| ++. ++++++.|
T Consensus 204 -------------------------------------~~~~~~~~v~~~~~~~~~~~~~-------------~l~~~~~d 233 (357)
T 3i2n_A 204 -------------------------------------WETNIKNGVCSLEFDRKDISMN-------------KLVATSLE 233 (357)
T ss_dssp -------------------------------------EEEECSSCEEEEEESCSSSSCC-------------EEEEEEST
T ss_pred -------------------------------------eecCCCCceEEEEcCCCCCCCC-------------EEEEECCC
Confidence 2346778899999999 666 89999999
Q ss_pred CcEEEEEcCCCceeEE-----EeecCCCCEEEEEEccCCC-EEEEEeCCCeEEEEeCccCcccee-------------ee
Q 047837 499 RTIHLYDVKRNFDLIE-----SIDDHSAAVTAVKFTCNGR-KILSCSADRSLVVRDVVETNSAYK-------------IS 559 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~-----~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-------------~~ 559 (882)
|.|++||+.++ .... .+.+|...|.+++|+|+++ +|++++.||.|++||+........ ..
T Consensus 234 g~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~ 312 (357)
T 3i2n_A 234 GKFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS 312 (357)
T ss_dssp TEEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEE
T ss_pred CeEEEEeCcCC-CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccc
Confidence 99999999864 3322 3448999999999999998 899999999999999986543311 11
Q ss_pred ccceecccCCceEEEEEecCCCEEE-EEeCCCcEEEEEccCCce
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVI-TVGQDKKINSFSIAAGKL 602 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~ 602 (882)
.......|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 313 ~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 1222345678999999999999988 899999999999987654
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-32 Score=296.67 Aligned_cols=312 Identities=15% Similarity=0.158 Sum_probs=235.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce--eeEEeeccccceeEEEECCCCCEEEEEc--CEEEEE
Q 047837 38 MVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA--FISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLW 113 (882)
Q Consensus 38 l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~--~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iW 113 (882)
+..|. ++|.+++|+||+++||+|+. |+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++ +.|++|
T Consensus 4 ~~~~~--~~i~~~~~s~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLV--EPISCHAWNKDRTQIAICPN--NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCS--SCCCEEEECTTSSEEEEECS--SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ecccC--CCeEEEEECCCCCEEEEEeC--CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 34577 89999999999999999954 8999999999998 8899999999999999999999999998 999999
Q ss_pred EcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceE
Q 047837 114 NWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYF 192 (882)
Q Consensus 114 d~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 192 (882)
|+.+++....+....+...|.+++|+|++++|++++. +.|++||+..+....... .....|
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~-------------- 141 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPI-------------- 141 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTC--------------
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----eeeccc--------------
Confidence 9999987666554444589999999999999999876 899999998765300000 000001
Q ss_pred EEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeeccc
Q 047837 193 VSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQS 272 (882)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 272 (882)
...+.+++|+|++++|++++.||.|++||+..
T Consensus 142 ------------------------------------------------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 142 ------------------------------------------------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp ------------------------------------------------CSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred ------------------------------------------------CCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 12338899999999999999999999999864
Q ss_pred ceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeec
Q 047837 273 LKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVS 352 (882)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~ 352 (882)
........ . ..|.... ........+
T Consensus 174 ~~~~~~~~-----------~-----------------------------------------~~~~~~~-~~~~~~~~~-- 198 (372)
T 1k8k_C 174 KEVEERPA-----------P-----------------------------------------TPWGSKM-PFGELMFES-- 198 (372)
T ss_dssp TTTSCCCC-----------C-----------------------------------------BTTBSCC-CTTCEEEEC--
T ss_pred cccccccc-----------c-----------------------------------------ccccccc-chhhheEec--
Confidence 32110000 0 0000000 000011111
Q ss_pred CcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeee
Q 047837 353 HSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIF 432 (882)
Q Consensus 353 ~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (882)
..|...|.+++|+ +++++|++++.||.|++||+.+++.+.
T Consensus 199 --------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------- 238 (372)
T 1k8k_C 199 --------------SSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVA------------------------- 238 (372)
T ss_dssp --------------CCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGTTEEE-------------------------
T ss_pred --------------CCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceeE-------------------------
Confidence 2356677888888 789999999999999999998776532
Q ss_pred eeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC--Cc
Q 047837 433 ERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR--NF 510 (882)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~--~~ 510 (882)
.+..|...|.+++|+|++. ++++| .|+.|++|++.. +.
T Consensus 239 --------------------------~~~~~~~~v~~~~~~~~~~-------------~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 239 --------------------------TLASETLPLLAVTFITESS-------------LVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp --------------------------EEECSSCCEEEEEEEETTE-------------EEEEE-TTSSCEEEEEETTTTE
T ss_pred --------------------------EEccCCCCeEEEEEecCCC-------------EEEEE-eCCeEEEEEccCcCce
Confidence 2446788899999999887 77777 899999999987 31
Q ss_pred -e------------------------------eE------EEe-ecCCCCEEEEEEc-cCC---CEEEEEeCCCeEEEEe
Q 047837 511 -D------------------------------LI------ESI-DDHSAAVTAVKFT-CNG---RKILSCSADRSLVVRD 548 (882)
Q Consensus 511 -~------------------------------~~------~~~-~~h~~~v~~~~~s-~~~---~~l~s~~~dg~i~vwd 548 (882)
. .. ..+ .+|...|++++|. ++| .+|++++.||.|++||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 0 00 222 4899999999976 566 9999999999999999
Q ss_pred CccCcc
Q 047837 549 VVETNS 554 (882)
Q Consensus 549 ~~~~~~ 554 (882)
+.+.+.
T Consensus 359 ~~~~~~ 364 (372)
T 1k8k_C 359 VRSLES 364 (372)
T ss_dssp HHHHHH
T ss_pred ecChhH
Confidence 986543
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=304.60 Aligned_cols=251 Identities=16% Similarity=0.171 Sum_probs=188.7
Q ss_pred CCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeE
Q 047837 368 MHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYR 447 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (882)
+|...|.+++|+ +++++|++++.||+|++||+.++....
T Consensus 53 ~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~~~---------------------------------------- 91 (377)
T 3dwl_C 53 DHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWK---------------------------------------- 91 (377)
T ss_dssp CCSSCEEEEEEC-TTTCCEEEEETTSSEEEC------CCC----------------------------------------
T ss_pred cCCceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCcee----------------------------------------
Confidence 356677777887 788999999999999999998755110
Q ss_pred EEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce--eEEEeec-CCCCEE
Q 047837 448 SMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD--LIESIDD-HSAAVT 524 (882)
Q Consensus 448 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~--~~~~~~~-h~~~v~ 524 (882)
....+..|...|.+++|+|+++ +|++++.|+.|++||+.++.. ....+.. |...|.
T Consensus 92 --------~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 92 --------QTLVLLRLNRAATFVRWSPNED-------------KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp --------CEEECCCCSSCEEEEECCTTSS-------------CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred --------eeeEecccCCceEEEEECCCCC-------------EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 1123457889999999999988 899999999999999987632 4667777 999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCccCcccee-----------eeccceecccCCceEEEEEecCCCEEEEEeCCCcEE
Q 047837 525 AVKFTCNGRKILSCSADRSLVVRDVVETNSAYK-----------ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKIN 593 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~ 593 (882)
+++|+|++++|++++.|+.|++||+........ .........|...|.+++|+|++++|++++.|+.|+
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVT 230 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEE
Confidence 999999999999999999999999863321110 011111126778999999999999999999999999
Q ss_pred EEEccCCce----EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe------------------------
Q 047837 594 SFSIAAGKL----IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE------------------------ 645 (882)
Q Consensus 594 iwd~~~~~~----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~------------------------ 645 (882)
+||+.+++. +..+. .|...|.+++|+|++++|++++.++.+ +|+...+.
T Consensus 231 iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (377)
T 3dwl_C 231 IAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307 (377)
T ss_dssp -CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred EEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccc
Confidence 999999987 77777 889999999999999999999866655 67654211
Q ss_pred ---------------EEEE-------------EccCCCCeEEEEECCCC-C---EEEEEeCCCeEEEEeC
Q 047837 646 ---------------MVAK-------------AMGHGEVITGVTFLPDC-K---HIVSVGGDGLQRVKEK 683 (882)
Q Consensus 646 ---------------~~~~-------------~~~h~~~v~~l~~s~d~-~---~l~s~~~dg~i~vwd~ 683 (882)
.... ...|...|+++++.++. . .|+|++.||.|++||+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0010 01299999999976543 3 6999999999999985
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=307.33 Aligned_cols=324 Identities=9% Similarity=0.043 Sum_probs=237.3
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEEcCEEEEEEcCcceeeeee
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVGGYIYLWNWRSAMLVMKL 124 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~~~i~iWd~~~g~~~~~~ 124 (882)
.+|.+++|||||+++|+++. |++|+ |...++ .+++|...|.+++|+||| .+.+|++.+++....+
T Consensus 16 ~~v~sv~~SpDG~~iASas~--D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~ 80 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFP--DISIG--QPKYAK---DINCNSKNLFHVKEFPLE--------FENKLDFELAQQNGLL 80 (588)
T ss_dssp SSSCCEEECTTSCEEEECSS--SEEEE--EECCCS---CCSSBGGGTEEEEEECCC--------CCCTTTTSCCCSSCSS
T ss_pred ccEEEEEECCCCCEEEEEcC--Cceee--cccccc---eecCCCccEEEEEECCCC--------CcceEEEEeCCCceEe
Confidence 68999999999999999955 88999 755554 458999999999999999 3445555544433333
Q ss_pred e-cCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeeccccc
Q 047837 125 K-ANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTD 202 (882)
Q Consensus 125 ~-~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 202 (882)
. .+ ...|.+++|+|||++||+++. |.|++|+.++ + ...+. |..++.
T Consensus 81 ~~~~--~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~--------l~~l~-~~~~~~------------------- 128 (588)
T 2j04_A 81 NSQP--VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M--------LTNLD-SKGNLS------------------- 128 (588)
T ss_dssp TTSC--SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E--------EEECC-CSSCST-------------------
T ss_pred ecCC--CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e--------eeecc-CCCccc-------------------
Confidence 3 22 388999999999999999876 8999999543 1 11112 222210
Q ss_pred CCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeeccccee-------
Q 047837 203 NGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKH------- 275 (882)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~------- 275 (882)
...+.+++|||||++||+|+.||+|++||+.++..
T Consensus 129 --------------------------------------~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~ 170 (588)
T 2j04_A 129 --------------------------------------SRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYF 170 (588)
T ss_dssp --------------------------------------TTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEE
T ss_pred --------------------------------------cccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccccee
Confidence 01237899999999999999999999999987642
Q ss_pred cccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcc
Q 047837 276 AGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSA 355 (882)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 355 (882)
+.++. ....++...+.+++|+|+| +++++.|++|++||++++........+.
T Consensus 171 l~ti~-----------------------~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~---- 222 (588)
T 2j04_A 171 ESSIR-----------------------LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQ---- 222 (588)
T ss_dssp EEEEE-----------------------CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEE----
T ss_pred eeeee-----------------------cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeec----
Confidence 11111 0012344567799999999 9999999999999998765321112231
Q ss_pred eeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeee
Q 047837 356 CIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERN 435 (882)
Q Consensus 356 ~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (882)
.+|...|.+++|+ ++.||+++ +++|++||+.+++...
T Consensus 223 -----------~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~---------------------------- 259 (588)
T 2j04_A 223 -----------NASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISS---------------------------- 259 (588)
T ss_dssp -----------CCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEE----------------------------
T ss_pred -----------ccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEE----------------------------
Confidence 1245667777776 57888887 6999999998765421
Q ss_pred eeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE--ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeE
Q 047837 436 TMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF--SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLI 513 (882)
Q Consensus 436 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~ 513 (882)
...+|...|..++| +|++. .+++++.||+ ++|...
T Consensus 260 -----------------------~~~gh~~~V~~va~~~s~d~~-------------~La~a~edG~-klw~~d------ 296 (588)
T 2j04_A 260 -----------------------LKTGSLENFHIIPLNHEKEST-------------ILLMSNKTSY-KVLLED------ 296 (588)
T ss_dssp -----------------------EECSCCSCCCEEEETTCSSCE-------------EEEECSSCEE-EEEESS------
T ss_pred -----------------------EEcCCCceEEEEEeeeCCCCC-------------EEEEEcCCCC-EEEeec------
Confidence 12268889999999 88877 8999999999 999976
Q ss_pred EEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC
Q 047837 514 ESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ 588 (882)
Q Consensus 514 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 588 (882)
.++++||+..+++. |+++++|+..... ...+ .+...|++++|+|||+.+|+++.
T Consensus 297 -----------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~-------~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 -----------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY-------ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -----------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS-------CCEEEEEEEEECTTSSEEEEEEE
T ss_pred -----------cEEECCCceEEEEc--CCEEEEEECCCCc-eeee-------ccceEEEEEEECCCCCEEEEEEe
Confidence 26699999888775 8999999986332 2111 11247999999999999998853
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.9e-33 Score=297.70 Aligned_cols=330 Identities=17% Similarity=0.234 Sum_probs=241.6
Q ss_pred EEEEecCCCCCeEEEEEcCC----CCEEEEeecCCCCeEEEEECCCceeeEEeec-----cccceeEEEECCC----CCE
Q 047837 36 HLMVSHRMPKPLCCVAMSRD----GRYVAAGESGPQPAVLVWDCANLAFISELKG-----HLYGVECIAFSPD----GEH 102 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spd----g~~la~g~~~~d~~I~vwd~~t~~~~~~l~~-----h~~~V~~lafspd----g~~ 102 (882)
....+|. +.|.+++|+|+ ..+++++.. ++.|+|||+.+++.+..+.. |...|.+++|+|+ |++
T Consensus 12 ~~~~~h~--~~v~~i~~~p~~~~~~~~~~~~~~--~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 12 SLKEDHN--QPLFGVQFNWHSKEGDPLVFATVG--SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp EEECTTC--SCEEEEEECTTCCTTSCEEEEEEE--TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred EeecCCC--CceEEEEEecccCCCCceEEEECC--CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence 3445788 89999999984 334444433 55999999999988877765 5578999999999 678
Q ss_pred EEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEcc-CCCEEEEECC-CcEEEEEcccCccceeccccCccceeec
Q 047837 103 LVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS-DAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLH 178 (882)
Q Consensus 103 Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 178 (882)
|++++ +.|+|||+.+++.+..+..|. ..|.+++|+| ++++|++++. +.|++||+.+++... ... .+..|
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~---~~~~~ 160 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKHYVGHG--NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA--IFG---GVEGH 160 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE--EEC---STTSC
T ss_pred EEEecCCCEEEEEEchhceEeeeecCCC--CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE--Eec---ccccc
Confidence 99998 999999999999999998876 8999999999 9999999875 899999998765411 100 00112
Q ss_pred CccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEE
Q 047837 179 AKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIAC 258 (882)
Q Consensus 179 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~ 258 (882)
. ..+.+++|+|++++|++
T Consensus 161 ~--------------------------------------------------------------~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 161 R--------------------------------------------------------------DEVLSADYDLLGEKIMS 178 (366)
T ss_dssp S--------------------------------------------------------------SCEEEEEECTTSSEEEE
T ss_pred c--------------------------------------------------------------CceeEEEECCCCCEEEE
Confidence 2 22388999999999999
Q ss_pred EecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEc
Q 047837 259 ACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDI 338 (882)
Q Consensus 259 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~ 338 (882)
++.||.|++||+.+++....+.. .+.|+|++..+.... ...+.
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~---~~~~~- 221 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKE---------------------------------SYDYNPNKTNRPFIS---QKIHF- 221 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHH---------------------------------HHTCCGGGCSSCCCC---EEECC-
T ss_pred ecCCCCEEEEECCCCccccccce---------------------------------eEEecCCCCcccccc---eeecc-
Confidence 99999999999998876655431 122333322111100 00000
Q ss_pred ccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCcccee
Q 047837 339 HDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNI 418 (882)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 418 (882)
.. ......|...|.+++|+ +++|++++.||.|++||+.+............
T Consensus 222 ------~~----------------~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---- 272 (366)
T 3k26_A 222 ------PD----------------FSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSE---- 272 (366)
T ss_dssp ------CS----------------EEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTC----
T ss_pred ------Cc----------------cccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCC----
Confidence 00 00123477788888887 66999999999999999987654322211110
Q ss_pred eecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecC--CCCCccceeccCCceEEEEEc
Q 047837 419 EPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLS--SKKDDVLEEVTDSHYFLASGG 496 (882)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~ 496 (882)
..... ...+..|...|.+++|+|+ +. +|++|+
T Consensus 273 -------------------------~~~~~--------~~~~~~~~~~v~~~~~s~~~~~~-------------~l~~~~ 306 (366)
T 3k26_A 273 -------------------------SNVTI--------LGRFDYSQCDIWYMRFSMDFWQK-------------MLALGN 306 (366)
T ss_dssp -------------------------CCEEE--------EEEEECSSCCSSCCCCEECTTSS-------------EEEEEC
T ss_pred -------------------------cchhe--------eccccccCCcEEEEEEcCCCCCc-------------EEEEEe
Confidence 00011 1235578888999999998 77 999999
Q ss_pred CCCcEEEEEcCCCc---eeEEEeecC--CCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 497 RDRTIHLYDVKRNF---DLIESIDDH--SAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 497 ~dg~v~iwd~~~~~---~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
.||.|++||+.++. .....+.+| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998752 244567777 7999999999999999999999999999986
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.1e-32 Score=300.98 Aligned_cols=313 Identities=14% Similarity=0.183 Sum_probs=219.6
Q ss_pred ceEEEEEecCCCCCeEEEEEcC-CCCEEEEeecCCCCeEEEEECCCcee--eEEeeccccceeEEEECC-CCCEEEEEc-
Q 047837 33 TQSHLMVSHRMPKPLCCVAMSR-DGRYVAAGESGPQPAVLVWDCANLAF--ISELKGHLYGVECIAFSP-DGEHLVTVG- 107 (882)
Q Consensus 33 ~~~~~l~~h~~~~~I~~va~sp-dg~~la~g~~~~d~~I~vwd~~t~~~--~~~l~~h~~~V~~lafsp-dg~~Las~~- 107 (882)
.......+|. ..|+||+|+| ++++||+|+. ||.|+|||+.+++. +..+.+|.+.|++|+|+| |+.+|++++
T Consensus 110 ~~~~~~~~~~--~~V~~l~~~P~~~~~lasGs~--dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~ 185 (435)
T 4e54_B 110 RILQKAAPFD--RRATSLAWHPTHPSTVAVGSK--GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM 185 (435)
T ss_dssp TSCCEEEECS--SCEEEEEECSSCTTCEEEEET--TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred eecccCCCCC--CCEEEEEEeCCCCCEEEEEeC--CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence 3344566787 8999999999 6789999966 89999999987754 445678999999999998 789999999
Q ss_pred -CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCcccccc
Q 047837 108 -GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLG 185 (882)
Q Consensus 108 -~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 185 (882)
++|+|||++++........+.....+.+++|+|++++|++++. +.|++||+..... ..+.+|..++
T Consensus 186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~---------~~~~~h~~~v--- 253 (435)
T 4e54_B 186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL---------WNLRMHKKKV--- 253 (435)
T ss_dssp SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC---------CCSBCCSSCE---
T ss_pred CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee---------EEEecccceE---
Confidence 9999999988766555554544467899999999999999986 8999999865432 2233344433
Q ss_pred ccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCC-EEEEEecCCe
Q 047837 186 IQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSK-LIACACSNGA 264 (882)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~dg~ 264 (882)
.+++|+|++. +|++++.|+.
T Consensus 254 -----------------------------------------------------------~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 254 -----------------------------------------------------------THVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp -----------------------------------------------------------EEEEECTTCSSEEEEEETTSB
T ss_pred -----------------------------------------------------------EeeeecCCCceEEEEecCcce
Confidence 7899999876 6778999999
Q ss_pred EEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEccccccc
Q 047837 265 VHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEA 344 (882)
Q Consensus 265 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~ 344 (882)
|++||+.+++....+.
T Consensus 275 v~iwd~~~~~~~~~~~---------------------------------------------------------------- 290 (435)
T 4e54_B 275 VKIWDLRQVRGKASFL---------------------------------------------------------------- 290 (435)
T ss_dssp CCEEETTTCCSSSCCS----------------------------------------------------------------
T ss_pred eeEEecccccccceEE----------------------------------------------------------------
Confidence 9999987654322110
Q ss_pred ceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCc
Q 047837 345 TRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTA 424 (882)
Q Consensus 345 ~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (882)
.. .+|...|++++|+ +++.+|++++.||+|++||+.++............. .
T Consensus 291 ----~~----------------~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~-~------ 342 (435)
T 4e54_B 291 ----YS----------------LPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH-F------ 342 (435)
T ss_dssp ----BC----------------CBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC-C------
T ss_pred ----Ee----------------eeccccccceeEC-CCCCeeEEEcCCCEEEEEECCCCccceEEecccccc-c------
Confidence 01 2356667777777 789999999999999999998876543321110000 0
Q ss_pred ceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEE
Q 047837 425 HLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLY 504 (882)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iw 504 (882)
.........+++++. +..+.+++++. .+++++..++.|++|
T Consensus 343 -----------------~~~~~~~~~~~~~~~----------~~~~~~~~d~~------------~~~~~~~~~~~i~iw 383 (435)
T 4e54_B 343 -----------------QHLTPIKAAWHPRYN----------LIVVGRYPDPN------------FKSCTPYELRTIDVF 383 (435)
T ss_dssp -----------------SSSCCCBCEECSSSS----------CEEEECCCCTT------------SCCSSTTCCCCEEEE
T ss_pred -----------------ccceeEEEEEcCCCC----------EEEEEEcCCCC------------eEEEEecCCCEEEEE
Confidence 000000112222222 22233333333 134444556789999
Q ss_pred EcCCCceeEEE-eecCCCCEEEE-EEccCCCEEEEEeCCCeEEEEeCccCc
Q 047837 505 DVKRNFDLIES-IDDHSAAVTAV-KFTCNGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 505 d~~~~~~~~~~-~~~h~~~v~~~-~~s~~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
|..++ +.+.. ..+|...|.++ +|+|+|++|++++ |+.|+||++++++
T Consensus 384 d~~~g-~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 384 DGNSG-KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CSSSC-CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred ECCCC-cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99987 44444 45788889887 6999999999876 7899999998654
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=278.61 Aligned_cols=290 Identities=18% Similarity=0.235 Sum_probs=229.4
Q ss_pred ECCCC-ceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEEE
Q 047837 28 DVDSS-TQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTV 106 (882)
Q Consensus 28 d~~~~-~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~ 106 (882)
|..++ +..+.+.+|. +.|++++| |++++||+|+. |+.|++||+.+++....+..|...|.+++|+|++++|+++
T Consensus 3 d~~~~~~~~~~l~~h~--~~v~~~~~-~~~~~l~s~~~--dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 3 DPFTGYQLSATLKGHD--QDVRDVVA-VDDSKVASVSR--DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp --CCCCEEEEEECCCS--SCEEEEEE-EETTEEEEEET--TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred CccccHHHHHHhhCCC--CCcEEEEe-cCCCEEEEEEc--CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe
Confidence 44444 6667889998 89999999 99999999965 8999999999999999999999999999999999999999
Q ss_pred c--CEEEEEEcCcc---eeeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceeecCc
Q 047837 107 G--GYIYLWNWRSA---MLVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAK 180 (882)
Q Consensus 107 ~--~~i~iWd~~~g---~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (882)
+ +.|++|++.+. +.+..+..|. ..|.+++| ++++|++++. +.|++|| .+.. ...+..|..
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~--------~~~~~~~~~ 143 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQ--GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL--------VYNLQAHNA 143 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCS--SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE--------EEEEECCSS
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcc--cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE--------EEecccCCC
Confidence 9 99999998754 5667777776 89999999 5677887765 8999999 2221 111122222
Q ss_pred cccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec-CCCEEEEE
Q 047837 181 PVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA-SSKLIACA 259 (882)
Q Consensus 181 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~~~ 259 (882)
+ +.+++|.| ++.+|+++
T Consensus 144 ~--------------------------------------------------------------v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 144 S--------------------------------------------------------------VWDAKVVSFSENKFLTA 161 (313)
T ss_dssp C--------------------------------------------------------------EEEEEEEETTTTEEEEE
T ss_pred c--------------------------------------------------------------eeEEEEccCCCCEEEEE
Confidence 2 26788877 88999999
Q ss_pred ecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcc
Q 047837 260 CSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIH 339 (882)
Q Consensus 260 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~ 339 (882)
+.||.|++||... ....
T Consensus 162 ~~d~~i~i~d~~~--~~~~------------------------------------------------------------- 178 (313)
T 3odt_A 162 SADKTIKLWQNDK--VIKT------------------------------------------------------------- 178 (313)
T ss_dssp ETTSCEEEEETTE--EEEE-------------------------------------------------------------
T ss_pred ECCCCEEEEecCc--eEEE-------------------------------------------------------------
Confidence 9999999998331 1100
Q ss_pred cccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceee
Q 047837 340 DVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIE 419 (882)
Q Consensus 340 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 419 (882)
+. ..|...|.+++|+ +++. +++++.||.|++||+.+++.+.
T Consensus 179 ----------~~---------------~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~~~~~~~------------ 219 (313)
T 3odt_A 179 ----------FS---------------GIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMHTGDVLR------------ 219 (313)
T ss_dssp ----------EC---------------SSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETTTCCEEE------------
T ss_pred ----------Ee---------------ccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECCchhhhh------------
Confidence 11 1145566777777 6666 8889999999999998765432
Q ss_pred ecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCC
Q 047837 420 PMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDR 499 (882)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg 499 (882)
.+..|...|.+++|+|++. +++++.||
T Consensus 220 ---------------------------------------~~~~~~~~i~~~~~~~~~~--------------l~~~~~dg 246 (313)
T 3odt_A 220 ---------------------------------------TYEGHESFVYCIKLLPNGD--------------IVSCGEDR 246 (313)
T ss_dssp ---------------------------------------EEECCSSCEEEEEECTTSC--------------EEEEETTS
T ss_pred ---------------------------------------hhhcCCceEEEEEEecCCC--------------EEEEecCC
Confidence 2457888999999999875 88999999
Q ss_pred cEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc
Q 047837 500 TIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA 555 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 555 (882)
.|++||+.++ +....+..|...|.+++|+|+++ +++++.||.|++||+.+++..
T Consensus 247 ~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 247 TVRIWSKENG-SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEEECTTTC-CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEEEECCCC-ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999887 77888899999999999999998 667999999999999866543
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.7e-32 Score=294.76 Aligned_cols=316 Identities=16% Similarity=0.159 Sum_probs=237.2
Q ss_pred CCCCCcEEEeecC-CCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 308 PTIPNAIACQFST-SEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 308 ~~~~~~~~~~~s~-~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
.+...+.+++|+| +++ +++++.||.|++||+.+........... +... ......+|...|.+++|++.++.+
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA-----VCSI-GRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-----EEEE-CTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-----cccc-cccccccCCCcEEEEEEccCCCcE
Confidence 4556677999999 887 5556779999999998765543221100 0000 011224588899999999558889
Q ss_pred EEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc
Q 047837 386 FSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA 465 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 465 (882)
|++++.||.|++||+.+++.... ..+..
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~----------------------------------------------------~~~~~ 142 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADV----------------------------------------------------FNFEE 142 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEE----------------------------------------------------EECSS
T ss_pred EEEEeCCCeEEEeeCCCCcccee----------------------------------------------------ccCCC
Confidence 99999999999999987664322 13556
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCC-EEEEEeCCCeE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGR-KILSCSADRSL 544 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i 544 (882)
.+.++.+++... ++.++++++.|+.|++||+.++ ..+..+..|...|.+++|+|+++ .|++++.||.|
T Consensus 143 ~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i 211 (408)
T 4a11_B 143 TVYSHHMSPVST----------KHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211 (408)
T ss_dssp CEEEEEECSSCS----------SCCEEEEEESSSSEEEEESSSS-CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ceeeeEeecCCC----------CCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcE
Confidence 677777777542 2338999999999999999886 67788899999999999999998 58899999999
Q ss_pred EEEeCccCccceeeecc----------ceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc---C
Q 047837 545 VVRDVVETNSAYKISRR----------HQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK---D 611 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---~ 611 (882)
++||++........... .....|...|.+++|+|++++|++++.|+.|++||+.+++....+.... .
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 291 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS 291 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc
Confidence 99999876533333211 1113566899999999999999999999999999999988765543111 1
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcc
Q 047837 612 FGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRN 691 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~ 691 (882)
...+........+..+++++.++.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+........
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 12222222333455666677899999999999999999999999999999999999999999999999999998776654
Q ss_pred c
Q 047837 692 F 692 (882)
Q Consensus 692 ~ 692 (882)
.
T Consensus 372 ~ 372 (408)
T 4a11_B 372 D 372 (408)
T ss_dssp -
T ss_pred C
Confidence 3
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.7e-33 Score=289.53 Aligned_cols=250 Identities=14% Similarity=0.178 Sum_probs=203.3
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|.+++|+ +++++|++|+.|++|++||+.++....
T Consensus 10 ~~H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~--------------------------------------- 49 (316)
T 3bg1_A 10 TSHEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQIL--------------------------------------- 49 (316)
T ss_dssp ----CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEE---------------------------------------
T ss_pred ccccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEE---------------------------------------
Confidence 4677888888888 899999999999999999997653210
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecC--CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCCE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLS--SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAAV 523 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~v 523 (882)
...+.+|.+.|.+++|+++ +. +|++|+.|++|++||+.++. .....+.+|...|
T Consensus 50 ----------~~~l~gH~~~V~~v~~~~~~~~~-------------~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V 106 (316)
T 3bg1_A 50 ----------IADLRGHEGPVWQVAWAHPMYGN-------------ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV 106 (316)
T ss_dssp ----------EEEEECCSSCEEEEEECCGGGSS-------------CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCC
T ss_pred ----------EEEEcCCCccEEEEEeCCCCCCC-------------EEEEEECCCEEEEEECCCCcceEEEEccCCCCce
Confidence 1235689999999999863 55 89999999999999998752 4566788999999
Q ss_pred EEEEEccC--CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC-----------------CCEEE
Q 047837 524 TAVKFTCN--GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT-----------------MEVVI 584 (882)
Q Consensus 524 ~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------------~~~l~ 584 (882)
.+++|+|+ +.+|++++.|++|++||+........ ......|...+.+++|+|+ +++|+
T Consensus 107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (316)
T 3bg1_A 107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV---KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA 183 (316)
T ss_dssp CEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE---CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce---eeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence 99999997 88999999999999999985432111 1122345678999999997 47899
Q ss_pred EEeCCCcEEEEEccCC---ceEEEEEeccCCCCcEEEEECCCC----CEEEEEeCCCcEEEEEccCC---e-EEEEEccC
Q 047837 585 TVGQDKKINSFSIAAG---KLIRSFKQAKDFGDPMKVTVDPSG----SYLVCSYSNKSICLYDFISG---E-MVAKAMGH 653 (882)
Q Consensus 585 ~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~spdg----~~l~~~~~dg~i~iwd~~~~---~-~~~~~~~h 653 (882)
+++.|+.|++||++.+ +.+..+. +|...|.+++|+|++ ++||+++.|++|+|||+.+. + ....+..|
T Consensus 184 sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 261 (316)
T 3bg1_A 184 SGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261 (316)
T ss_dssp CCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred EecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence 9999999999999755 3555565 899999999999987 89999999999999999762 1 12345568
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 654 GEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 654 ~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
...|.+++|+|++++|++++.|+.|++|+..
T Consensus 262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8999999999999999999999999999975
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-33 Score=296.66 Aligned_cols=317 Identities=10% Similarity=0.046 Sum_probs=239.8
Q ss_pred eeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCC
Q 047837 242 KVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTS 321 (882)
Q Consensus 242 ~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 321 (882)
..+.+++|+|||+++|+++.|++|+ |...++.+ .+ |...+.+++|+|+
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-----------~g-------------------h~~~v~~V~FsPd 63 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-----------NC-------------------NSKNLFHVKEFPL 63 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-----------SS-------------------BGGGTEEEEEECC
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccccee-----------cC-------------------CCccEEEEEECCC
Confidence 4458999999999999999999999 64433221 23 4445668999999
Q ss_pred CeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC
Q 047837 322 EKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 322 ~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~ 401 (882)
| .++.+.+|+.+..... ...|...|.+++|+ |+|.+||+++.||+|++||..
T Consensus 64 g------~~~~~~~~~~~~~~~~---------------------~~~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~ 115 (588)
T 2j04_A 64 E------FENKLDFELAQQNGLL---------------------NSQPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDN 115 (588)
T ss_dssp C------CCCTTTTSCCCSSCSS---------------------TTSCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETT
T ss_pred C------CcceEEEEeCCCceEe---------------------ecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCC
Confidence 9 4555555544321110 01346788999999 899999999999999999954
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc-----eEEEEEEecCC
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA-----EILSLSFSLSS 476 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-----~v~~~~~~~~~ 476 (882)
. .+. .+. |.. .|.+++|+|++
T Consensus 116 ~--~l~---------------------------------------------------~l~-~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 116 K--MLT---------------------------------------------------NLD-SKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp E--EEE---------------------------------------------------ECC-CSSCSTTTCEEEEEECSSS
T ss_pred c--eee---------------------------------------------------ecc-CCCccccccEEEEEEcCCC
Confidence 3 111 122 333 48888999988
Q ss_pred CCCccceeccCCceEEEEEcCCCcEEEEEcCCCce------eEEEe----ecCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 477 KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD------LIESI----DDHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~------~~~~~----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
+ +||+|+.||+|+|||+.++.. .+.++ .+|...|.+++|+||| +++++.|++|++
T Consensus 142 ~-------------~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrl 206 (588)
T 2j04_A 142 S-------------SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFS 206 (588)
T ss_dssp S-------------CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEE
T ss_pred C-------------EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEE
Confidence 8 999999999999999987631 35666 6778899999999999 888999999999
Q ss_pred EeCccCccc--eeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEE--CC
Q 047837 547 RDVVETNSA--YKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTV--DP 622 (882)
Q Consensus 547 wd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~--sp 622 (882)
||+...... ..... ..|...|.+++|+ +..||+++ +++|++||+.+++...... +|...+..++| +|
T Consensus 207 Wd~~~~~~~~~~~tL~----~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQ----NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEK 277 (588)
T ss_dssp ECCCSSSSCCCEEEEE----CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCS
T ss_pred EECCCCccccceeeec----ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCC
Confidence 999865532 11111 1344689999999 68999887 6999999999877744433 79999999999 99
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEE
Q 047837 623 SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPII 702 (882)
Q Consensus 623 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 702 (882)
|+..|++++.||+ ++|... .+.|+||+..+++. |+.+++|+..+.. ...+.....+..+.
T Consensus 278 d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va 337 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGIS 337 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEE
T ss_pred CCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEE
Confidence 9999999999999 999987 25688998877764 8899999876554 33455555567788
Q ss_pred EecCCCeEEEeccc
Q 047837 703 FCEEEDQKCRMDSV 716 (882)
Q Consensus 703 ~s~~~~~~~~~~~~ 716 (882)
|||++..++.....
T Consensus 338 ~SPdG~~lA~~~~i 351 (588)
T 2j04_A 338 LSPDGYSIAIVYDM 351 (588)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCEEEEEEec
Confidence 99998877665544
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=297.48 Aligned_cols=306 Identities=13% Similarity=0.121 Sum_probs=215.4
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc--eeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEE
Q 047837 39 VSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL--AFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWN 114 (882)
Q Consensus 39 ~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~--~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd 114 (882)
..|. +.|.+++|+|||++||+|+. |+.|+|||+.++ +++..+.+|...|.+++|+|++++|++++ ++|+|||
T Consensus 8 ~~~~--~~v~~~~~s~~g~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 8 HILP--KPSYEHAFNSQRTEFVTTTA--TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EECS--SCCSCCEECSSSSEEECCCS--SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred ecCC--CcEEEEEECCCCCEEEEecC--CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3455 78999999999999999955 899999999998 78889999999999999999999999999 9999999
Q ss_pred cCcce---eeeeeecCCcccceeEEEEccCCCEEEEECC-CcEEEEEcccCccceeccccCccceee-cCcccccccccc
Q 047837 115 WRSAM---LVMKLKANSSCSAITSACFSSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTL-HAKPVNLGIQKE 189 (882)
Q Consensus 115 ~~~g~---~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 189 (882)
+.+++ ....+..|. ..|.+++|+|++++|++++. +.|++||+..+... . ....+.. |.
T Consensus 84 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~---~~~~~~~~h~---------- 146 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLN--RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--W---VSKHLKRPLR---------- 146 (377)
T ss_dssp -----CCCCEEECCCCS--SCEEEEECCTTSSCCEEEESSSCEEECCC-----C--C---CCEEECSSCC----------
T ss_pred cCCCCceeeeeEecccC--CceEEEEECCCCCEEEEEecCCeEEEEEECCcccc--e---eeeEeecccC----------
Confidence 99987 555566665 89999999999999999875 89999999876420 0 0011111 22
Q ss_pred ceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeee
Q 047837 190 SYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFD 269 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd 269 (882)
..+.+++|+|++++|++++.||.|++||
T Consensus 147 ----------------------------------------------------~~v~~~~~~~~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 147 ----------------------------------------------------STILSLDWHPNNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp ----------------------------------------------------SCEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred ----------------------------------------------------CCeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 2338999999999999999999999999
Q ss_pred cccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeee
Q 047837 270 IQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCV 349 (882)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~ 349 (882)
+...+....... .+.+. .+ ..+ .....
T Consensus 175 ~~~~~~~~~~~~-------------------------------------~~~~~--------~~-----~~~---~~~~~ 201 (377)
T 3dwl_C 175 AYVRDVDAKPEA-------------------------------------SVWGS--------RL-----PFN---TVCAE 201 (377)
T ss_dssp ECCSSCC-CCCS-------------------------------------CSSCS--------CC-----CEE---EEEEC
T ss_pred EEecccCCCccc-------------------------------------ccccc--------cc-----chh---hhhhc
Confidence 975432211100 00000 00 000 00001
Q ss_pred eecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEee
Q 047837 350 LVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSA 429 (882)
Q Consensus 350 ~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (882)
+ .|...|.+++|+ +++++|++++.||+|++||+.+++.....
T Consensus 202 ----------------~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------- 243 (377)
T 3dwl_C 202 ----------------Y-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPSAPEQPPRA-------------------- 243 (377)
T ss_dssp ----------------C-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEECSTTSCEEE--------------------
T ss_pred ----------------c-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCCccee--------------------
Confidence 1 467778888888 89999999999999999999887641100
Q ss_pred eeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC
Q 047837 430 GIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN 509 (882)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~ 509 (882)
...+..|...|.+++|+|+++ +|++|+.++.+ +|+....
T Consensus 244 ---------------------------~~~~~~~~~~v~~~~~s~~~~-------------~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 244 ---------------------------LITVKLSQLPLRSLLWANESA-------------IVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp ---------------------------CCCEECSSSCEEEEEEEETTE-------------EEEEESSSSEE-EECCCC-
T ss_pred ---------------------------eEeecCCCCceEEEEEcCCCC-------------EEEEEcCCcEE-EEEeCCC
Confidence 012457888999999999987 88888877655 6665421
Q ss_pred c-ee----------------------------E------EEe----------------ecCCCCEEEEEEccC-CC---E
Q 047837 510 F-DL----------------------------I------ESI----------------DDHSAAVTAVKFTCN-GR---K 534 (882)
Q Consensus 510 ~-~~----------------------------~------~~~----------------~~h~~~v~~~~~s~~-~~---~ 534 (882)
. .. . ..+ ..|...|+++++.+. +. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~ 362 (377)
T 3dwl_C 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITA 362 (377)
T ss_dssp --CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEE
T ss_pred ceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEE
Confidence 1 00 0 111 129999999997664 33 6
Q ss_pred EEEEeCCCeEEEEeC
Q 047837 535 ILSCSADRSLVVRDV 549 (882)
Q Consensus 535 l~s~~~dg~i~vwd~ 549 (882)
|++++.||.|++||+
T Consensus 363 ~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 363 FTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTSEEEEECC
T ss_pred EEeecCCCcEEEecC
Confidence 999999999999985
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-30 Score=286.16 Aligned_cols=297 Identities=16% Similarity=0.237 Sum_probs=226.7
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeE
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKL 324 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 324 (882)
+.++|+++ +.||+|. |++|+|||..+++....+. +..+...|.+++|+|+|++
T Consensus 109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~-------------------------~~~~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQ-------------------------MEQPGEYISSVAWIKEGNY 161 (420)
T ss_dssp BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEE-------------------------CCSTTCCEEEEEECTTSSE
T ss_pred eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEE-------------------------ecCCCCcEEEEEECCCCCE
Confidence 56899975 5777775 9999999999998765543 1234445779999999975
Q ss_pred -EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCC
Q 047837 325 -VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQ 403 (882)
Q Consensus 325 -l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~ 403 (882)
++++.|+.|++||+.+++. ...+.+|.. .+.++++ ++.+|++|+.|+.+++||....
T Consensus 162 lasgs~Dg~v~iWd~~~~~~---~~~~~~h~~----------------~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKR---LRNMTSHSA----------------RVGSLSW---NSYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp EEEEETTSCEEEEETTTTEE---EEEECCCSS----------------CEEEEEE---ETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEECCCeEEEEEcCCCcE---EEEEeCCCC----------------ceEEEee---CCCEEEEEeCCCceeEeeeccc
Confidence 5567799999999987643 334555554 4444444 4779999999999999998764
Q ss_pred ceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccce
Q 047837 404 SELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLE 483 (882)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 483 (882)
... ...+.+|...+..+.+++++.
T Consensus 220 ~~~--------------------------------------------------~~~~~~h~~~~~~~~~~~~g~------ 243 (420)
T 4gga_A 220 EHH--------------------------------------------------VATLSGHSQEVCGLRWAPDGR------ 243 (420)
T ss_dssp SCE--------------------------------------------------EEEEECCSSCEEEEEECTTSS------
T ss_pred cee--------------------------------------------------eEEecccccceeeeeecCCCC------
Confidence 322 123568899999999999988
Q ss_pred eccCCceEEEEEcCCCcEEEEEcCCCc---eeEEEeecCCCCEEEEEEccCC-CEEEE--EeCCCeEEEEeCccCcccee
Q 047837 484 EVTDSHYFLASGGRDRTIHLYDVKRNF---DLIESIDDHSAAVTAVKFTCNG-RKILS--CSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 484 ~~~~~~~~l~~g~~dg~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~~-~~l~s--~~~dg~i~vwd~~~~~~~~~ 557 (882)
++++++.|+.+++|+..++. ..+.....|...|.+++|+|++ ..+++ ++.|++|++||+.++.....
T Consensus 244 -------~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 244 -------HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp -------EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred -------eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 99999999999999997642 2456777899999999999965 45554 45799999999997765444
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCc
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKS 635 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~ 635 (882)
+.. ...+.++.|+|+++.+++++ .|+.|++||+.+++++.++. +|.+.|++++|+|||++||+|+.|++
T Consensus 317 ~~~-------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 317 VDA-------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp EEC-------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred ecc-------ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 322 25799999999999988765 78999999999999999998 89999999999999999999999999
Q ss_pred EEEEEccCCeEEEEEccCCCCeEEEEE
Q 047837 636 ICLYDFISGEMVAKAMGHGEVITGVTF 662 (882)
Q Consensus 636 i~iwd~~~~~~~~~~~~h~~~v~~l~~ 662 (882)
|+|||+.+..+......+...+....|
T Consensus 388 vriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 388 LRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEECCSCSSCC---------------
T ss_pred EEEEECCCCCccchhhhccCCcccccc
Confidence 999999877666655555544444444
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.3e-31 Score=288.51 Aligned_cols=280 Identities=21% Similarity=0.315 Sum_probs=223.3
Q ss_pred CCCCcEEEeecCCC-eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 309 TIPNAIACQFSTSE-KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 309 ~~~~~~~~~~s~~~-~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
+...+.++.| ++ .+++++.||.|++||+.+++.. ..+.+|. ..|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~---~~~~~h~----------------~~v~~l~~---~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK---RILTGHT----------------GSVLCLQY---DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE---EEECCCS----------------SCEEEEEC---CSSEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE---EEEcCCC----------------CcEEEEEE---CCCEEE
Confidence 3445667776 55 5677888999999999876432 3444554 45555554 678999
Q ss_pred EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 388 TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 388 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
+|+.||+|++||+.+++.+. .+.+|...|
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---------------------------------------------------~~~~h~~~v 216 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---------------------------------------------------TLIHHCEAV 216 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---------------------------------------------------EECCCCSCE
T ss_pred EEcCCCeEEEEECCCCcEEE---------------------------------------------------EEcCCCCcE
Confidence 99999999999998876532 245788889
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee--EEEeecCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL--IESIDDHSAAVTAVKFTCNGRKILSCSADRSLV 545 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 545 (882)
.+++|++. ++++|+.||.|++||+.++... ...+.+|...|.+++| ++++|++++.||.|+
T Consensus 217 ~~l~~~~~---------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 217 LHLRFNNG---------------MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp EEEECCTT---------------EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEEEEcCC---------------EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 99998643 7999999999999999875322 3677899999999999 789999999999999
Q ss_pred EEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCC
Q 047837 546 VRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 625 (882)
+||+.++.....+. .|...|.+++|+ +.++++++.|+.|++||+++++++..+. +|...|.+++| ++.
T Consensus 280 vwd~~~~~~~~~~~------~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 280 VWNTSTCEFVRTLN------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNK 347 (435)
T ss_dssp EEETTTCCEEEEEE------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEC--CSS
T ss_pred EEECCcCcEEEEEc------CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe--CCcCcEEEEEe--cCC
Confidence 99999765544432 345789999884 6899999999999999999999999997 89999999999 789
Q ss_pred EEEEEeCCCcEEEEEccCCe---------EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCC
Q 047837 626 YLVCSYSNKSICLYDFISGE---------MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQ 694 (882)
Q Consensus 626 ~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 694 (882)
+|++|+.||.|++||+.+++ .+..+.+|.+.|.+++| ++++|++++.||.|++||+.+.........
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 423 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP 423 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------------
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC
Confidence 99999999999999998776 88999999999999999 788999999999999999987665544333
No 93
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-30 Score=278.12 Aligned_cols=263 Identities=18% Similarity=0.207 Sum_probs=219.9
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|++++|+ +++++|++++.||.|++||+.++....+.
T Consensus 8 ~gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------------------------------- 49 (351)
T 3f3f_A 8 SGHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWEL------------------------------------- 49 (351)
T ss_dssp CCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEE-------------------------------------
T ss_pred cccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCccee-------------------------------------
Confidence 5678888889998 79999999999999999999865422110
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEec--CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--------eeEEEe
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSL--SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--------DLIESI 516 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--------~~~~~~ 516 (882)
...+.+|...|.+++|+| ++. +|++|+.||.|++||+..+. ..+..+
T Consensus 50 ----------~~~~~~~~~~v~~~~~~~~~d~~-------------~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 50 ----------SDSWRAHDSSIVAIDWASPEYGR-------------IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp ----------EEEEECCSSCEEEEEECCGGGCS-------------EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred ----------cceeccCCCcEEEEEEcCCCCCC-------------EEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 123567999999999999 466 89999999999999998753 457788
Q ss_pred ecCCCCEEEEEEccC--CCEEEEEeCCCeEEEEeCccCccceeeecc-------ceecccCCceEEEEEecC---CCEEE
Q 047837 517 DDHSAAVTAVKFTCN--GRKILSCSADRSLVVRDVVETNSAYKISRR-------HQQLASQGTVYDMDIDPT---MEVVI 584 (882)
Q Consensus 517 ~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~sp~---~~~l~ 584 (882)
..|...|.+++|+|+ +.+|++++.|+.|++||+.+......+... .....+...+.+++|+|+ +.+++
T Consensus 107 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 186 (351)
T 3f3f_A 107 NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186 (351)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEE
T ss_pred cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEE
Confidence 899999999999999 999999999999999999876644332211 111245678999999997 89999
Q ss_pred EEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC----CEEEEEeCCCcEEEEEccCC----------------
Q 047837 585 TVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG----SYLVCSYSNKSICLYDFISG---------------- 644 (882)
Q Consensus 585 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg----~~l~~~~~dg~i~iwd~~~~---------------- 644 (882)
+++.|+.+.+|+...++........+|...|++++|+|++ ++|++++.||.|++||+.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 266 (351)
T 3f3f_A 187 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF 266 (351)
T ss_dssp EEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred EecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence 9999999999998888763333334899999999999998 89999999999999999875
Q ss_pred ------------------------------eEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 645 ------------------------------EMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 645 ------------------------------~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
+.+..+.+|...|++++|+|++++|++++.||.|++||+.......
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 6778889999999999999999999999999999999998766543
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-31 Score=284.60 Aligned_cols=285 Identities=16% Similarity=0.255 Sum_probs=223.0
Q ss_pred eEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeE-
Q 047837 246 GFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKL- 324 (882)
Q Consensus 246 ~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l- 324 (882)
++.|+ +..+++++.||.|++|++.+++....+. ..+...+.+++|+|++++
T Consensus 98 ~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~--------------------------~~~~~~v~~v~~s~~~~~l 149 (401)
T 4aez_A 98 LLDWS--NLNVVAVALERNVYVWNADSGSVSALAE--------------------------TDESTYVASVKWSHDGSFL 149 (401)
T ss_dssp CEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEE--------------------------CCTTCCEEEEEECTTSSEE
T ss_pred EEeec--CCCEEEEECCCeEEEeeCCCCcEeEeee--------------------------cCCCCCEEEEEECCCCCEE
Confidence 45555 4668889999999999999887665443 123455779999999874
Q ss_pred EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCc
Q 047837 325 VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQS 404 (882)
Q Consensus 325 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~ 404 (882)
++++.||.|++||+.+++.. ..+.+ |...|.+++|+ ++.|++++.||.|++||+....
T Consensus 150 ~~~~~dg~i~iwd~~~~~~~---~~~~~----------------~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQTKL---RTMAG----------------HQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp EEEETTSCEEEEETTTCCEE---EEECC----------------CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSS
T ss_pred EEECCCCeEEEEECcCCeEE---EEecC----------------CCCceEEEEEC---CCEEEEEcCCCCEEEEecccCc
Confidence 55667999999999876432 23334 45566666663 5799999999999999998533
Q ss_pred eeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcccee
Q 047837 405 ELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEE 484 (882)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 484 (882)
.. ...+.+|.+.|.+++|+|++.
T Consensus 208 ~~--------------------------------------------------~~~~~~~~~~v~~~~~~~~~~------- 230 (401)
T 4aez_A 208 HQ--------------------------------------------------IGTLQGHSSEVCGLAWRSDGL------- 230 (401)
T ss_dssp CE--------------------------------------------------EEEEECCSSCEEEEEECTTSS-------
T ss_pred ce--------------------------------------------------eeEEcCCCCCeeEEEEcCCCC-------
Confidence 21 123567899999999999988
Q ss_pred ccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCC-EEEEEe--CCCeEEEEeCccCccceeeecc
Q 047837 485 VTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGR-KILSCS--ADRSLVVRDVVETNSAYKISRR 561 (882)
Q Consensus 485 ~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~--~dg~i~vwd~~~~~~~~~~~~~ 561 (882)
++++|+.|+.|++||+.++ .....+..|...|.+++|+|++. ++++++ .|+.|++||+.++.....+.
T Consensus 231 ------~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-- 301 (401)
T 4aez_A 231 ------QLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-- 301 (401)
T ss_dssp ------EEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--
T ss_pred ------EEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--
Confidence 9999999999999999886 67778889999999999999765 555654 79999999999765544432
Q ss_pred ceecccCCceEEEEEecCCCEEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 047837 562 HQQLASQGTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 562 ~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iw 639 (882)
+...+.+++|+|+++++++++ .|+.|++||+.+++........+|...|.+++|+|+|++|++++.||.|++|
T Consensus 302 -----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 302 -----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp -----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred -----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 336899999999999999954 8999999999998776665545899999999999999999999999999999
Q ss_pred EccCCeEEEEEc
Q 047837 640 DFISGEMVAKAM 651 (882)
Q Consensus 640 d~~~~~~~~~~~ 651 (882)
|+.+++.+....
T Consensus 377 ~~~~~~~~~~~~ 388 (401)
T 4aez_A 377 RVYDGDHVKRPI 388 (401)
T ss_dssp ECCC--------
T ss_pred ECCCCccccccc
Confidence 999998776543
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-30 Score=278.30 Aligned_cols=281 Identities=11% Similarity=0.042 Sum_probs=231.6
Q ss_pred CCCCCcEEEeecCCCe-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc-E
Q 047837 308 PTIPNAIACQFSTSEK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV-S 385 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~-~ 385 (882)
++...+.+++|+|+++ +++++.|+.|++|++..+........+. .|...|.+++|+ ++++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~-~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----------------RYKHPLLCCNFI-DNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----------------ECSSCEEEEEEE-ESSSEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee----------------ecCCceEEEEEC-CCCCcE
Confidence 5666788999999987 5567779999999998765322222222 356677788888 7899 9
Q ss_pred EEEeeCCCcEEEEec-CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee--
Q 047837 386 FSTCSADGTIRLWDL-ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA-- 462 (882)
Q Consensus 386 l~t~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-- 462 (882)
|++++.||.|++||+ .+++. ..+.+
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----------------------------------------------------~~~~~~~ 99 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----------------------------------------------------QALTNNE 99 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----------------------------------------------------EECBSCC
T ss_pred EEEEcCCCeEEEEEeccCCce----------------------------------------------------EeccccC
Confidence 999999999999999 76532 12446
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC---------CceeEEEeecCCCCEEEEEEccCCC
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR---------NFDLIESIDDHSAAVTAVKFTCNGR 533 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~---------~~~~~~~~~~h~~~v~~~~~s~~~~ 533 (882)
|...|.+++|+| +. ++++++.|+.|++||+.+ . +.+..+. |...|.+++|+|++
T Consensus 100 ~~~~v~~l~~~~-~~-------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 100 ANLGICRICKYG-DD-------------KLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp CCSCEEEEEEET-TT-------------EEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCCCEEEEEECSSE-
T ss_pred CCCceEEEEeCC-CC-------------EEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCCceEEEEecCCc-
Confidence 889999999999 76 899999999999999876 3 4444444 88999999999887
Q ss_pred EEEEEeCCCeEEEEeCcc-CccceeeeccceecccCCceEEEEEec-CCCEEEEEeCCCcEEEEEccCC------ceEEE
Q 047837 534 KILSCSADRSLVVRDVVE-TNSAYKISRRHQQLASQGTVYDMDIDP-TMEVVITVGQDKKINSFSIAAG------KLIRS 605 (882)
Q Consensus 534 ~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~------~~~~~ 605 (882)
+++++.|+.|++||++. ....... ....+...+.+++|+| +++++++++.|+.|++||+... +....
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTI----EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEE----EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred -EEEEeCCCeEEEEECCcccccccee----eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 99999999999999986 4332221 1123456899999999 9999999999999999999887 77778
Q ss_pred EEeccCC---------CCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccC-CCCeEEEEECCCCCEEEEEeCC
Q 047837 606 FKQAKDF---------GDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH-GEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 606 ~~~~~~~---------~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~~d 675 (882)
+. .|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |++++|++++.|
T Consensus 238 ~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 238 FR--CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EE--CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred ee--cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 87 454 49999999999999999999999999999999999999998 99999999 999999999999
Q ss_pred Ce-EEEEeC
Q 047837 676 GL-QRVKEK 683 (882)
Q Consensus 676 g~-i~vwd~ 683 (882)
|. .+.|+.
T Consensus 314 g~~~~~~~~ 322 (342)
T 1yfq_A 314 DTFKTNAAI 322 (342)
T ss_dssp THHHHCSSS
T ss_pred Ccccccccc
Confidence 98 655553
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.2e-30 Score=286.95 Aligned_cols=347 Identities=13% Similarity=0.155 Sum_probs=233.3
Q ss_pred ceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC
Q 047837 241 LKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST 320 (882)
Q Consensus 241 ~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 320 (882)
...|.+++|+|+|++||+|+.||.|++|++.+++......
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~---------------------------------------- 67 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS---------------------------------------- 67 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC----------------------------------------
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc----------------------------------------
Confidence 4556999999999999999999999999998754221000
Q ss_pred CCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC--cEEEEeeCCCcEEEE
Q 047837 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG--VSFSTCSADGTIRLW 398 (882)
Q Consensus 321 ~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~--~~l~t~~~dg~i~vw 398 (882)
. +.. .....+.+|......+.. ..+...|.+++|+ +++ ..|++++.|++|++|
T Consensus 68 ~---------~~~-----------~~~~~~~~h~~~~~~~~~----~~~~~~V~~l~~~-~~~~~~~l~s~s~d~~i~iw 122 (447)
T 3dw8_B 68 R---------GEY-----------NVYSTFQSHEPEFDYLKS----LEIEEKINKIRWL-PQKNAAQFLLSTNDKTIKLW 122 (447)
T ss_dssp C---------CCE-----------EEEEEEECCCCEEEGGGT----EEECCCCCEEEEC-CCCSSSEEEEEECSSCEEEE
T ss_pred c---------cce-----------eEeccccccccccccccc----ccccCceEEEEEc-CCCCcceEEEeCCCCeEEEE
Confidence 0 000 011234444422111110 0123778899998 666 789999999999999
Q ss_pred ecCCCceeeecccCCccc-eeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCC
Q 047837 399 DLALQSELSKDVLGHESL-NIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSK 477 (882)
Q Consensus 399 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~ 477 (882)
|+.++............. ..........+...... ...+............+|...|.+++|+|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 190 (447)
T 3dw8_B 123 KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFR------------PMDLMVEASPRRIFANAHTYHINSISINSDYE 190 (447)
T ss_dssp EEEEEEEEEECCSCC--------CCCCCSCCCCEEE------------EEEEEEEEEEEEEECSCCSSCCCEEEECTTSS
T ss_pred ecccccCCcceecccCccccccCcccccceEecccc------------chheeeeccceEEeccCCCcceEEEEEcCCCC
Confidence 998755432111000000 00000000000000000 00011111111223468999999999999988
Q ss_pred CCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE-------eecCCCCEEEEEEccCC-CEEEEEeCCCeEEEEeC
Q 047837 478 KDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES-------IDDHSAAVTAVKFTCNG-RKILSCSADRSLVVRDV 549 (882)
Q Consensus 478 ~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-------~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~ 549 (882)
+|++| .|+.|++||+.+....... +.+|...|.+++|+|++ ++|++++.||.|++||+
T Consensus 191 -------------~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 191 -------------TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp -------------EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred -------------EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 89998 7999999999854344442 56899999999999998 99999999999999999
Q ss_pred ccCccc---eeeecccee-------cccCCceEEEEEecCCCEEEEEeCCCcEEEEEccC-CceEEEEEeccCCCC----
Q 047837 550 VETNSA---YKISRRHQQ-------LASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA-GKLIRSFKQAKDFGD---- 614 (882)
Q Consensus 550 ~~~~~~---~~~~~~~~~-------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~---- 614 (882)
+++... ......+.. ..|...|.+++|+|++++|++++. +.|++||+++ ++.+..+. .|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--~~~~~~~~l 333 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--VHEYLRSKL 333 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--SCGGGTTTH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee--ccccccccc
Confidence 876642 222222221 112238999999999999999999 9999999997 88888887 44321
Q ss_pred -----------cEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-------------------------------
Q 047837 615 -----------PMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG------------------------------- 652 (882)
Q Consensus 615 -----------v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------------- 652 (882)
+..++|+|++++|++++.||.|++||+.+++.+. +.+
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccc
Confidence 3359999999999999999999999999988763 222
Q ss_pred --CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 653 --HGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 653 --h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
+...|..++|+|++++|++++.++ +++|.-
T Consensus 413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 345789999999999999998876 667753
No 97
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=4.4e-30 Score=257.69 Aligned_cols=275 Identities=10% Similarity=0.054 Sum_probs=198.8
Q ss_pred EEeecCCCe---EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCC---------CCCCCCcceeeeccCC
Q 047837 315 ACQFSTSEK---LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCE---------NMHDPSVSCVARGCTG 382 (882)
Q Consensus 315 ~~~~s~~~~---ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~h~~~v~~~~~~~~~ 382 (882)
++.|-..+- .+++..+..|++|+..+...-.....+..|+.+|..+.+.+.. +.+...|.+++++ ++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s-pd 122 (356)
T 2w18_A 44 AMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS-SD 122 (356)
T ss_dssp EEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC----
T ss_pred eeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC-CC
Confidence 344444442 5667779999999999875556667888888888888775311 2233344555554 44
Q ss_pred ----CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEE
Q 047837 383 ----GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTL 458 (882)
Q Consensus 383 ----~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 458 (882)
++.+++++.+ +++|++.
T Consensus 123 ~~~~~~~l~s~g~~--~~v~~l~--------------------------------------------------------- 143 (356)
T 2w18_A 123 DESEKQVLLKSGNI--KAVLGLT--------------------------------------------------------- 143 (356)
T ss_dssp ---CCEEEEEEEEE--EEEEEET---------------------------------------------------------
T ss_pred ccccccEEEeCCCe--EEEEecC---------------------------------------------------------
Confidence 4444444422 4444432
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEc--CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc---CCC
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG--RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC---NGR 533 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~---~~~ 533 (882)
+++ ++.+++ .|+.|++|++....+.+..+.+|...++.++|++ ++.
T Consensus 144 ----------------~g~-------------lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 144 ----------------KRR-------------LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE 194 (356)
T ss_dssp ----------------TTE-------------EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred ----------------CCc-------------EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence 222 555543 6999999999664477888889999999999999 779
Q ss_pred EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEE------------EEEeCCCcEEEEEccCCc
Q 047837 534 KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVV------------ITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 534 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l------------~~~~~d~~v~iwd~~~~~ 601 (882)
+|++++.|++|+|||+.+++....+...+. +...+.+++|+|+|.++ ++|+.|++|++||..+++
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCC------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred eEEEecCCCcEEEEECCCCcEEEEEcCCCc---ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 999999999999999998876666543221 12468888999999876 567889999999999999
Q ss_pred eEEEEE---eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeE-EEEECCCCCEEEEEeCCCe
Q 047837 602 LIRSFK---QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVIT-GVTFLPDCKHIVSVGGDGL 677 (882)
Q Consensus 602 ~~~~~~---~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~s~d~~~l~s~~~dg~ 677 (882)
.+..+. ..+|...+.+..++ +.++|+++.|++|+|||+.+|+++.++.+|...+. .++|+|||++|++|+.|++
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 887663 13555555444444 88999999999999999999999999999987665 5899999999999999999
Q ss_pred EEEEeC
Q 047837 678 QRVKEK 683 (882)
Q Consensus 678 i~vwd~ 683 (882)
|||||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999995
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.1e-29 Score=267.11 Aligned_cols=280 Identities=17% Similarity=0.249 Sum_probs=223.5
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK- 323 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~- 323 (882)
+.++||+++ +||+| .|++|+|||+.+++.+..+. ...+...+.+++|+|+++
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~-------------------------~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ-------------------------MEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE-------------------------CCSTTCCEEEEEECTTSSE
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE-------------------------ecCCCCeEEEEEECCCCCE
Confidence 678999986 67766 49999999999998776553 123445577999999997
Q ss_pred EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCC
Q 047837 324 LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQ 403 (882)
Q Consensus 324 ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~ 403 (882)
+++++.|+.|++||+++++. ...+.+|...+..+. .++..+++++.++.+++|+....
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~---~~~~~~h~~~~~~~~-------------------~~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKR---LRNMTSHSARVGSLS-------------------WNSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp EEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEE-------------------EETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEECCCcEEEeecCCcee---EEEecCccceEEEee-------------------cCCCEEEEEecCCceEeeecCCC
Confidence 45577799999999988743 334556655544433 35779999999999999998765
Q ss_pred ceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccce
Q 047837 404 SELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLE 483 (882)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 483 (882)
... ...+.+|...+..+.+.+.+.
T Consensus 140 ~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~------ 163 (318)
T 4ggc_A 140 EHH--------------------------------------------------VATLSGHSQEVCGLRWAPDGR------ 163 (318)
T ss_dssp SCE--------------------------------------------------EEEEECCSSCEEEEEECTTSS------
T ss_pred cee--------------------------------------------------EEEEcCccCceEEEEEcCCCC------
Confidence 432 123557889999999999988
Q ss_pred eccCCceEEEEEcCCCcEEEEEcCCCc---eeEEEeecCCCCEEEEEEccCCCEE---EEEeCCCeEEEEeCccCcccee
Q 047837 484 EVTDSHYFLASGGRDRTIHLYDVKRNF---DLIESIDDHSAAVTAVKFTCNGRKI---LSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 484 ~~~~~~~~l~~g~~dg~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l---~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
++++++.|+.|++||+.++. ........|...|..++++|++..+ ++++.++.|++||.........
T Consensus 164 -------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 164 -------HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp -------EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred -------EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 99999999999999998642 2345666788999999999966533 3667889999999986544332
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEe--CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCc
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVG--QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKS 635 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~ 635 (882)
. .+...+..+.|+|++..+++++ .|+.|++||+++++++.++. +|.+.|++++|+|||++||+|+.||+
T Consensus 237 ~-------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 237 V-------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp E-------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred c-------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 2 2335899999999999887765 78999999999999999998 89999999999999999999999999
Q ss_pred EEEEEccCCe
Q 047837 636 ICLYDFISGE 645 (882)
Q Consensus 636 i~iwd~~~~~ 645 (882)
|+|||+.+..
T Consensus 308 v~iWd~~~~d 317 (318)
T 4ggc_A 308 LRLWRCFELD 317 (318)
T ss_dssp EEEECCSCCC
T ss_pred EEEEECCCCC
Confidence 9999997653
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=287.98 Aligned_cols=263 Identities=13% Similarity=0.163 Sum_probs=206.5
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|++++|+ +++++|++|+.||.|++|++.++......... ....
T Consensus 27 ~~~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~--------------------------------~~~~ 73 (447)
T 3dw8_B 27 EADIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSHSRG--------------------------------EYNV 73 (447)
T ss_dssp GGGSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CCCCC--------------------------------CEEE
T ss_pred ccCcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCccccc--------------------------------ceeE
Confidence 57889999999 79999999999999999999876531100000 0000
Q ss_pred EEEcCCCCEEEeeecc------------ceEEEEEEecCC--CCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee--
Q 047837 449 MAVSSRGSTLLLDAHD------------AEILSLSFSLSS--KKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL-- 512 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~------------~~v~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~-- 512 (882)
...+.+|. ..|.+++|+|++ . ++++++.|+.|++||+.++...
T Consensus 74 --------~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~-------------~l~s~s~d~~i~iw~~~~~~~~~~ 132 (447)
T 3dw8_B 74 --------YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA-------------QFLLSTNDKTIKLWKISERDKRPE 132 (447)
T ss_dssp --------EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS-------------EEEEEECSSCEEEEEEEEEEEEEE
T ss_pred --------ecccccccccccccccccccCceEEEEEcCCCCcc-------------eEEEeCCCCeEEEEecccccCCcc
Confidence 12345676 789999999987 5 8999999999999998763211
Q ss_pred ------------------------------------EEE-eecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc
Q 047837 513 ------------------------------------IES-IDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA 555 (882)
Q Consensus 513 ------------------------------------~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 555 (882)
... ..+|...|.+++|+|++++|+++ .|+.|++||+......
T Consensus 133 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 211 (447)
T 3dw8_B 133 GYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRS 211 (447)
T ss_dssp CCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEE
T ss_pred eecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCce
Confidence 112 36799999999999999999998 7999999999854433
Q ss_pred eeeec--cceecccCCceEEEEEecCC-CEEEEEeCCCcEEEEEccCCce----EEEEEeccCCC------------CcE
Q 047837 556 YKISR--RHQQLASQGTVYDMDIDPTM-EVVITVGQDKKINSFSIAAGKL----IRSFKQAKDFG------------DPM 616 (882)
Q Consensus 556 ~~~~~--~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~------------~v~ 616 (882)
..... ......|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+. .|.. .|.
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~ 289 (447)
T 3dw8_B 212 FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE--EPEDPSNRSFFSEIISSIS 289 (447)
T ss_dssp EEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC--CC-----CCHHHHHTTCEE
T ss_pred eeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec--cCCCccccccccccCceEE
Confidence 33211 11233566899999999998 9999999999999999999887 67776 5554 899
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccC-CeEEEEEccCCCC---------------eEEEEECCCCCEEEEEeCCCeEEE
Q 047837 617 KVTVDPSGSYLVCSYSNKSICLYDFIS-GEMVAKAMGHGEV---------------ITGVTFLPDCKHIVSVGGDGLQRV 680 (882)
Q Consensus 617 ~~~~spdg~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~s~d~~~l~s~~~dg~i~v 680 (882)
+++|+|+|++|++++. +.|++||+++ ++++..+.+|... +..++|+|++++|++++.||.|++
T Consensus 290 ~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 290 DVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp EEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEE
T ss_pred EEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEE
Confidence 9999999999999998 9999999997 8888888888542 334999999999999999999999
Q ss_pred EeCCCCCCC
Q 047837 681 KEKYGILPP 689 (882)
Q Consensus 681 wd~~~~~~~ 689 (882)
||+.+....
T Consensus 369 wd~~~~~~~ 377 (447)
T 3dw8_B 369 FDRNTKRDI 377 (447)
T ss_dssp EETTTCCEE
T ss_pred EEcCCCcce
Confidence 999876543
No 100
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1e-29 Score=263.73 Aligned_cols=241 Identities=15% Similarity=0.202 Sum_probs=198.3
Q ss_pred EEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC-ceeEEEeecCCCCEEEEEEcc--CCCE
Q 047837 458 LLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN-FDLIESIDDHSAAVTAVKFTC--NGRK 534 (882)
Q Consensus 458 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~--~~~~ 534 (882)
..+.+|.+.|.+++|+|+++ +|++|+.|++|+|||+... .+.+..+.+|...|.+++|++ ++++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-------------~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~ 69 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-------------RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSE
T ss_pred eeccCCcCceEEEEECCCCC-------------EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCE
Confidence 34678999999999999998 9999999999999999753 356788999999999999986 4899
Q ss_pred EEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC--CCEEEEEeCCCcEEEEEccCCce--EEEEEecc
Q 047837 535 ILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT--MEVVITVGQDKKINSFSIAAGKL--IRSFKQAK 610 (882)
Q Consensus 535 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~ 610 (882)
|++++.|++|++||+.++..... .....|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+. +
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~~~----~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~--~ 143 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWSQI----AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID--A 143 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBCCC----EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE--C
T ss_pred EEEEcCCCEEEEEEcCCCceEEE----EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee--c
Confidence 99999999999999986532111 112245578999999997 89999999999999999987642 33444 8
Q ss_pred CCCCcEEEEECCC-------------CCEEEEEeCCCcEEEEEccCCe----EEEEEccCCCCeEEEEECCCC---CEEE
Q 047837 611 DFGDPMKVTVDPS-------------GSYLVCSYSNKSICLYDFISGE----MVAKAMGHGEVITGVTFLPDC---KHIV 670 (882)
Q Consensus 611 ~~~~v~~~~~spd-------------g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~d~---~~l~ 670 (882)
|...|.+++|+|+ +++||+|+.|++|++||+++++ .+..+.+|...|.+++|+|++ ++|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 9999999999997 5799999999999999998765 667889999999999999995 8999
Q ss_pred EEeCCCeEEEEeCCCCCCC---cc---cCCCCCcccEEEecCCCeEEEecccc
Q 047837 671 SVGGDGLQRVKEKYGILPP---RN---FAQPAALSPIIFCEEEDQKCRMDSVN 717 (882)
Q Consensus 671 s~~~dg~i~vwd~~~~~~~---~~---~~~~~~~~~~~~s~~~~~~~~~~~~~ 717 (882)
+++.|++|++||+...... .. ..+...+..+.|+|++..++....+.
T Consensus 224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence 9999999999999764321 11 23456677888988887776655443
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.3e-30 Score=275.96 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=209.4
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|.+++|+ +++++|++++.||.|++||+.......
T Consensus 8 ~~h~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------------------------------- 47 (379)
T 3jrp_A 8 NAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKL--------------------------------------- 47 (379)
T ss_dssp EECCCCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEE---------------------------------------
T ss_pred cCCcccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCccee---------------------------------------
Confidence 4577888888888 899999999999999999997432110
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecC--CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCCE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLS--SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAAV 523 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~v 523 (882)
...+.+|...|.+++|+++ +. +|++|+.||.|++||+.++. ..+..+..|...|
T Consensus 48 ----------~~~~~~h~~~v~~~~~~~~~~~~-------------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v 104 (379)
T 3jrp_A 48 ----------IDTLTGHEGPVWRVDWAHPKFGT-------------ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 104 (379)
T ss_dssp ----------EEEECCCSSCEEEEEECCGGGCS-------------EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ----------eeEecCCCCcEEEEEeCCCCCCC-------------EEEEeccCCEEEEEEcCCCceeEeeeecCCCcce
Confidence 1235679999999999876 66 99999999999999998862 2667788899999
Q ss_pred EEEEEccC--CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec-------------CCCEEEEEeC
Q 047837 524 TAVKFTCN--GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-------------TMEVVITVGQ 588 (882)
Q Consensus 524 ~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------------~~~~l~~~~~ 588 (882)
.+++|+|+ +.+|++++.|+.|++||+......... ....|...|.+++|+| ++.+|++++.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 105 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp EEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE----EEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred EEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE----EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 99999999 999999999999999999876433222 1234557999999999 6999999999
Q ss_pred CCcEEEEEccCCce----EEEEEeccCCCCcEEEEECCC---CCEEEEEeCCCcEEEEEccCCe---EEEE--EccCCCC
Q 047837 589 DKKINSFSIAAGKL----IRSFKQAKDFGDPMKVTVDPS---GSYLVCSYSNKSICLYDFISGE---MVAK--AMGHGEV 656 (882)
Q Consensus 589 d~~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~spd---g~~l~~~~~dg~i~iwd~~~~~---~~~~--~~~h~~~ 656 (882)
|+.|++||+++++. ...+. +|...|.+++|+|+ +++|++++.||.|++||+.+++ .... ...|...
T Consensus 181 dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 258 (379)
T ss_dssp TSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC
T ss_pred CCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc
Confidence 99999999987653 34444 78999999999999 8999999999999999999863 2222 2348899
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 657 ITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 657 v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
|++++|+|++++|++++.||.|++|++..
T Consensus 259 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 259 LWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 99999999999999999999999999874
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.4e-30 Score=281.80 Aligned_cols=294 Identities=15% Similarity=0.175 Sum_probs=228.6
Q ss_pred EEeecCCCeEEE--EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC
Q 047837 315 ACQFSTSEKLVV--VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD 392 (882)
Q Consensus 315 ~~~~s~~~~ll~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d 392 (882)
.++++|+...+. ++.+|.|++|++....... .....+.+|...|.+++|++.++++|++++.|
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d 103 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSED 103 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETT
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCC
Confidence 478888876443 4669999999996532210 01112345778888888883389999999999
Q ss_pred CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE
Q 047837 393 GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF 472 (882)
Q Consensus 393 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~ 472 (882)
|+|++||+.++...... ......+.+|...|.+++|
T Consensus 104 g~v~vw~~~~~~~~~~~--------------------------------------------~~~~~~~~~h~~~v~~~~~ 139 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPL--------------------------------------------REPVITLEGHTKRVGIVAW 139 (402)
T ss_dssp SEEEEEECCTTCCSSCB--------------------------------------------CSCSEEEECCSSCEEEEEE
T ss_pred CeEEEEEccCCCCcccc--------------------------------------------CCceEEecCCCCeEEEEEE
Confidence 99999999876432110 0112346689999999999
Q ss_pred ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe--ecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 473 SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI--DDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
+|++. .+|++++.|+.|++||+.++ +.+..+ ..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 140 ~p~~~------------~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 140 HPTAQ------------NVLLSAGCDNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp CSSBT------------TEEEEEETTSCEEEEETTTT-EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred CcCCC------------CEEEEEcCCCEEEEEECCCC-CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 99973 18999999999999999987 777777 7899999999999999999999999999999999
Q ss_pred cCccceeeeccceecccCCceEEEEEecCCCEEEEE---eCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEE
Q 047837 551 ETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV---GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 627 (882)
++.....+...+. ...+.+++|+|++++|+++ +.|+.|++||+++++.........+...+..++|+|++++|
T Consensus 207 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 207 KGTVVAEKDRPHE----GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp TTEEEEEEECSSC----SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred CCceeeeeccCCC----CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 7665444422222 1248999999999999999 79999999999987653333223577889999999999999
Q ss_pred EE-EeCCCcEEEEEccCCeE-EEEEcc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 628 VC-SYSNKSICLYDFISGEM-VAKAMG--HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 628 ~~-~~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
++ ++.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++...
T Consensus 283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred EEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 74 55799999999998873 444444 5689999999999998874 5679999998763
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-30 Score=283.92 Aligned_cols=344 Identities=10% Similarity=0.147 Sum_probs=241.1
Q ss_pred EEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC-CCe-E
Q 047837 247 FALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST-SEK-L 324 (882)
Q Consensus 247 ~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~-l 324 (882)
..|+|+++.+++++ .|+. +++.+..+. ..+...+.+++|+| +++ +
T Consensus 33 ~~f~~~~~~~~~~~------~w~~-~g~~~~~~~--------------------------~~h~~~V~~~~~s~~~~~~l 79 (437)
T 3gre_A 33 KEFGPIQEIVRSPN------MGNL-RGKLIATLM--------------------------ENEPNSITSSAVSPGETPYL 79 (437)
T ss_dssp GGGCCCCCCCCCCC------GGGC-CCCEEEEEC--------------------------TTTTSCEEEEEEECSSSCEE
T ss_pred hhcCCccccccccc------cccc-cceEEeeec--------------------------cCCCCceEEEEECCCCCCEE
Confidence 35788888887765 4773 344444331 23456677999999 886 5
Q ss_pred EEEeCCceEEEEEcccccccceee-eeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC--
Q 047837 325 VVVYGDHSLYVWDIHDVNEATRCC-VLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA-- 401 (882)
Q Consensus 325 l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~-- 401 (882)
++++.|+.|++||+.+.+...... .+ ...|...|.+++|+ +++++|++++.||+|++||+.
T Consensus 80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~---------------~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 80 ITGSDQGVIKIWNLKEIIVGEVYSSSL---------------TYDCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp EEEETTSEEEEEEHHHHHTTCCCSCSE---------------EEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEE
T ss_pred EEecCCceEEEeECcccccCcccceee---------------eccCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccc
Confidence 567779999999997622111000 00 01367778888888 789999999999999999995
Q ss_pred -CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEE--EecCCCC
Q 047837 402 -LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLS--FSLSSKK 478 (882)
Q Consensus 402 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~--~~~~~~~ 478 (882)
.++...... ...++.+.+++++ +...+.++. +++++.
T Consensus 144 ~~~~~~~~~~--------------------------------~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~- 183 (437)
T 3gre_A 144 QQESEVKFLN--------------------------------CECIRKINLKNFG-------KNEYAVRMRAFVNEEKS- 183 (437)
T ss_dssp EETTEEEEEE--------------------------------EEEEEEEEGGGGS-------SCCCEEEEEEEECSSCE-
T ss_pred cCCceeeccc--------------------------------cceeEEEEccCcc-------cccCceEEEEEEcCCCC-
Confidence 333221100 0023334443332 455666666 345554
Q ss_pred CccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec--CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce
Q 047837 479 DDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD--HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY 556 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 556 (882)
++++|+.|+.|++||+.++ +.+..+.. |...|++++|+|++++|++++.||.|++||++++....
T Consensus 184 ------------~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 184 ------------LLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp ------------EEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ------------EEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 9999999999999999887 67778887 89999999999999999999999999999999755444
Q ss_pred eeeccceecccCCceEEEEEe----cCCCEEEEEeCCCcEEEEEccCCceEEEEEecc----------------------
Q 047837 557 KISRRHQQLASQGTVYDMDID----PTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK---------------------- 610 (882)
Q Consensus 557 ~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------------------- 610 (882)
.+.. .+...|.+++|+ |++.+|++++.|+.|++||+.+++++..+..+.
T Consensus 251 ~~~~-----~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 251 SWSF-----GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEBC-----TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred EEec-----CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 3322 233589999555 567899999999999999999999988887321
Q ss_pred --CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 611 --DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG---EVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 611 --~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
|...|++++|+ ++++|++++.|+.|++||+.+++.+..+.+|. ..+....++++..+++.. |+...
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 396 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTS 396 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC---
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe--------ccccc
Confidence 55668899999 78999999999999999999999988888864 345566677776666544 22211
Q ss_pred CCCCc-ccCCCCCcccEEEecC
Q 047837 686 ILPPR-NFAQPAALSPIIFCEE 706 (882)
Q Consensus 686 ~~~~~-~~~~~~~~~~~~~s~~ 706 (882)
..... ...+...+..+.|+++
T Consensus 397 ~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 397 THSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp ----------CCCEEEEEEEES
T ss_pred ccccCcccccccceeeEeeecc
Confidence 11111 1235556666777666
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-29 Score=275.55 Aligned_cols=302 Identities=11% Similarity=0.034 Sum_probs=232.9
Q ss_pred cEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecc------------------------------
Q 047837 313 AIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKN------------------------------ 362 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~------------------------------ 362 (882)
+.+++|+++|++++++.++.|++||+.+++.......+..+........+
T Consensus 7 ~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp CCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 45789999999998888999999999888733233334433221110000
Q ss_pred --------cCCCCCCCCCcceeeeccCCCcEE-EEeeCCCcEEEEecC--CCceeeecccCCccceeeecCCcceEeeee
Q 047837 363 --------LGCENMHDPSVSCVARGCTGGVSF-STCSADGTIRLWDLA--LQSELSKDVLGHESLNIEPMSTAHLVSAGI 431 (882)
Q Consensus 363 --------~~~~~~h~~~v~~~~~~~~~~~~l-~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (882)
......|...|.+++|+ +++++| ++++.||.|++||+. +++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~----------------------- 142 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKL----------------------- 142 (450)
T ss_dssp -------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-----------------------
T ss_pred cCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeee-----------------------
Confidence 01123567789999999 788885 899999999999998 5544321
Q ss_pred eeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce
Q 047837 432 FERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD 511 (882)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~ 511 (882)
+....|...|.+++|+|++. +|++|+.+|.|++|++.+...
T Consensus 143 --------------------------~~~~~~~~~v~~~~~sp~~~-------------~l~~~~~~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 143 --------------------------RKRFCFSKRPNAISIAEDDT-------------TVIIADKFGDVYSIDINSIPE 183 (450)
T ss_dssp --------------------------EEEEECSSCEEEEEECTTSS-------------EEEEEETTSEEEEEETTSCCC
T ss_pred --------------------------eecccCCCCceEEEEcCCCC-------------EEEEEeCCCcEEEEecCCccc
Confidence 01125678899999999988 999999999999999987522
Q ss_pred ---eEEEeecCCCCEEEEEEccC---CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEE
Q 047837 512 ---LIESIDDHSAAVTAVKFTCN---GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVIT 585 (882)
Q Consensus 512 ---~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 585 (882)
....+.+|...|.+++|+|+ +++|++++.|+.|++||+.++.....+.. +|...|.+++|+ ++++|++
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF-----GHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC-----CCSSCEEEEEEC-STTEEEE
T ss_pred ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec-----CCCCceEEEEEC-CCCEEEE
Confidence 23367789999999999999 99999999999999999987655444332 345799999999 9999999
Q ss_pred EeCCCcEEEEEccCCceEEEEEec-----------------------cCCCCcEEEEECCCCCEEEEEe-CCCcEEEEEc
Q 047837 586 VGQDKKINSFSIAAGKLIRSFKQA-----------------------KDFGDPMKVTVDPSGSYLVCSY-SNKSICLYDF 641 (882)
Q Consensus 586 ~~~d~~v~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~~~spdg~~l~~~~-~dg~i~iwd~ 641 (882)
++.|+.|++||+.+++++..+... .....+..++|+|++++|++++ .|+.|+|||+
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999999998888622 2245789999999999999998 8999999999
Q ss_pred --cCC---eEEEEEccCCCCeEEEEECCCCCEEEEEeC-------CCeEEEEeCCC
Q 047837 642 --ISG---EMVAKAMGHGEVITGVTFLPDCKHIVSVGG-------DGLQRVKEKYG 685 (882)
Q Consensus 642 --~~~---~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-------dg~i~vwd~~~ 685 (882)
.++ +.+..+.+| ..|.+++|+|++ ++++.+. +..|++|.+..
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 666 778888888 899999999964 5555432 55688888653
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=269.89 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=226.3
Q ss_pred CCCCCCcEEEeecCC---Ce-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC
Q 047837 307 TPTIPNAIACQFSTS---EK-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG 382 (882)
Q Consensus 307 ~~~~~~~~~~~~s~~---~~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~ 382 (882)
..+...+.+++|+|+ |+ +++++.||.|++||+.+.... ....+.+ |...|.+++|+ ++
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~----------------h~~~v~~~~~~-~~ 97 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-IPKAQQM----------------HTGPVLDVCWS-DD 97 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-EEEEEEE----------------CSSCEEEEEEC-TT
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-eEEEecc----------------ccCCEEEEEEC-cC
Confidence 356667789999999 45 566777999999999863211 1123333 56667777787 79
Q ss_pred CcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee
Q 047837 383 GVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462 (882)
Q Consensus 383 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 462 (882)
+++|++++.||.|++||+.+++.. ....
T Consensus 98 ~~~l~s~~~dg~v~iwd~~~~~~~----------------------------------------------------~~~~ 125 (368)
T 3mmy_A 98 GSKVFTASCDKTAKMWDLSSNQAI----------------------------------------------------QIAQ 125 (368)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEE----------------------------------------------------EEEE
T ss_pred CCEEEEEcCCCcEEEEEcCCCCce----------------------------------------------------eecc
Confidence 999999999999999999876532 1346
Q ss_pred ccceEEEEEE--ecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC
Q 047837 463 HDAEILSLSF--SLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA 540 (882)
Q Consensus 463 ~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 540 (882)
|...|.+++| ++++. ++++++.|+.|++||+.++ +.+..+..|. .+.++.+. ...+++++.
T Consensus 126 ~~~~v~~~~~~~~~~~~-------------~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 188 (368)
T 3mmy_A 126 HDAPVKTIHWIKAPNYS-------------CVMTGSWDKTLKFWDTRSS-NPMMVLQLPE-RCYCADVI--YPMAVVATA 188 (368)
T ss_dssp CSSCEEEEEEEECSSCE-------------EEEEEETTSEEEEECSSCS-SCSEEEECSS-CEEEEEEE--TTEEEEEEG
T ss_pred ccCceEEEEEEeCCCCC-------------EEEEccCCCcEEEEECCCC-cEEEEEecCC-CceEEEec--CCeeEEEeC
Confidence 8899999999 67666 8999999999999999886 6666777554 56666665 458889999
Q ss_pred CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCE----EEEEeCCCcEEEEEccCC---ceEEEEEeccCCC
Q 047837 541 DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEV----VITVGQDKKINSFSIAAG---KLIRSFKQAKDFG 613 (882)
Q Consensus 541 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~ 613 (882)
++.+.+|++............ .....+.++++.++... +++++.|+.|++||+... +.+..+. .|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~ 262 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIES----PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK--CHRS 262 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCC----SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE--CSEE
T ss_pred CCcEEEEEeccccchhhhccc----cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee--eeec
Confidence 999999999865443332221 12245666777666554 999999999999999987 5566666 5544
Q ss_pred ------------CcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 614 ------------DPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 614 ------------~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
.|++++|+|++++|++++.||.|++||+.+++++..+.+|...|++++|+||+++|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999876666
Q ss_pred eCCCC
Q 047837 682 EKYGI 686 (882)
Q Consensus 682 d~~~~ 686 (882)
++...
T Consensus 343 ~~~~~ 347 (368)
T 3mmy_A 343 EFYNP 347 (368)
T ss_dssp GGCCT
T ss_pred cccCC
Confidence 65443
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.1e-29 Score=272.39 Aligned_cols=317 Identities=11% Similarity=0.078 Sum_probs=207.8
Q ss_pred CcEEEeecC---C-CeEEEEeCCceEEEEEcccccccc------eeeeeecCcceeeeecccCC----CCCCCCCcceee
Q 047837 312 NAIACQFST---S-EKLVVVYGDHSLYVWDIHDVNEAT------RCCVLVSHSACIWDIKNLGC----ENMHDPSVSCVA 377 (882)
Q Consensus 312 ~~~~~~~s~---~-~~ll~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~v~~i~~~~~----~~~h~~~v~~~~ 377 (882)
...++.|.. + ..+++++.++.|.+|+........ .......+...+..+.+... ...|...+....
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 344556643 3 258888889999999875432211 11112233444444443221 122444444444
Q ss_pred eccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCE
Q 047837 378 RGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGST 457 (882)
Q Consensus 378 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 457 (882)
+ ++++.+|++++.|++|++||..++........
T Consensus 97 ~-~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~---------------------------------------------- 129 (393)
T 4gq1_A 97 S-PVYSLFLACVCQDNTVRLIITKNETIITQHVL---------------------------------------------- 129 (393)
T ss_dssp C-CEEEEEEEEEETTSCEEEEEEETTEEEEEEEE----------------------------------------------
T ss_pred c-CCCCCEEEEEeCCCcEEEEECCCCccceeeee----------------------------------------------
Confidence 4 47888999999999999999987754322110
Q ss_pred EEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCC-CEEE
Q 047837 458 LLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNG-RKIL 536 (882)
Q Consensus 458 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~ 536 (882)
..+.+|.+.|.+++|+|... ...+.++++||+|+.|++|+|||+.++ ..+..+..|...|.+++|+|++ .+|+
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~-----~~~~~d~~~las~s~D~tv~~Wd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYS-----ADNRLAEQVIASVGDDCTLIIWRLTDE-GPILAGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEEC-----TTCSEEEEEEEEEETTSEEEEEEEETT-EEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred cccCCCCCceEEEEEccccc-----cccCCCCCEEEEEECCCeEEEEECCCC-ceeeeecCCCCCcEEEEECCCCCceEE
Confidence 01458999999999998311 001123459999999999999999876 5666677799999999999987 4799
Q ss_pred EEeCCCeEEEEeCccCccceeeecc-------------------ceecccCCceEEEEEe-cCCCEEEEEeCCCcEEEEE
Q 047837 537 SCSADRSLVVRDVVETNSAYKISRR-------------------HQQLASQGTVYDMDID-PTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 537 s~~~dg~i~vwd~~~~~~~~~~~~~-------------------~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd 596 (882)
+++.|++|++||+.++......... .....|...+.++.|+ |+++.|++++.|+++++||
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 9999999999999876543322110 0112456788899987 7999999999999999999
Q ss_pred ccCCceEEEEEeccCCCCcE------------------EEEECC--CCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCC
Q 047837 597 IAAGKLIRSFKQAKDFGDPM------------------KVTVDP--SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEV 656 (882)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~v~------------------~~~~sp--dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 656 (882)
+..++....+. .|...+. ...|+| ++.++++|+.||.|+|||+.+++.+..+.+|..+
T Consensus 284 ~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~ 361 (393)
T 4gq1_A 284 LFANNDYNEIS--DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP 361 (393)
T ss_dssp C---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC
T ss_pred CccCCCCceEe--eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc
Confidence 99887666554 3333322 233443 4456788889999999999999988888889999
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 657 ITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 657 v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
|++|+|+|||++||+++.|| +.+|.+.
T Consensus 362 V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999999999999766 5566654
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=270.09 Aligned_cols=307 Identities=16% Similarity=0.206 Sum_probs=222.4
Q ss_pred EEECCCCceEEEEEecCCCCCeEEEEEcCC---CCEEEEeecCCCCeEEEEECCC-ceee-EEeeccccceeEEEECCCC
Q 047837 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRD---GRYVAAGESGPQPAVLVWDCAN-LAFI-SELKGHLYGVECIAFSPDG 100 (882)
Q Consensus 26 vwd~~~~~~~~~l~~h~~~~~I~~va~spd---g~~la~g~~~~d~~I~vwd~~t-~~~~-~~l~~h~~~V~~lafspdg 100 (882)
.++....+.+..+.+|. +.|+|++|+|+ |++||+|+. |+.|+|||+.+ ++.+ ..+.+|...|.+++|+|++
T Consensus 23 ~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPD--DSIGCLSFSPPTLPGNFLIAGSW--ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp CCSSCTTCCEECSSCCS--SCEEEEEECCTTSSSEEEEEEET--TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS
T ss_pred cCCCCCcceeEeccCCC--CceEEEEEcCCCCCceEEEEECC--CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC
Confidence 45666667778888998 89999999999 699999965 89999999997 5555 7789999999999999999
Q ss_pred CEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEE--ccCCCEEEEECC-CcEEEEEcccCccceeccccCccce
Q 047837 101 EHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACF--SSDAKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESL 175 (882)
Q Consensus 101 ~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~f--s~d~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (882)
++|++++ +.|++||+.+++.+.. ..|. ..|.+++| ++++++|++++. +.|++||+.+++... .+
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--------~~ 167 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQI-AQHD--APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM--------VL 167 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE-EECS--SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE--------EE
T ss_pred CEEEEEcCCCcEEEEEcCCCCceee-cccc--CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE--------EE
Confidence 9999998 9999999999988764 4454 89999999 889998888875 899999998765411 11
Q ss_pred eecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCE
Q 047837 176 TLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKL 255 (882)
Q Consensus 176 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 255 (882)
..+. ..+++.+....
T Consensus 168 ~~~~-----------------------------------------------------------------~~~~~~~~~~~ 182 (368)
T 3mmy_A 168 QLPE-----------------------------------------------------------------RCYCADVIYPM 182 (368)
T ss_dssp ECSS-----------------------------------------------------------------CEEEEEEETTE
T ss_pred ecCC-----------------------------------------------------------------CceEEEecCCe
Confidence 1110 12223333457
Q ss_pred EEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEE
Q 047837 256 IACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYV 335 (882)
Q Consensus 256 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~i 335 (882)
+++++.++.+++|++..........
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------------------------------- 207 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRI------------------------------------------------------- 207 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEEC-------------------------------------------------------
T ss_pred eEEEeCCCcEEEEEeccccchhhhc-------------------------------------------------------
Confidence 8888888888888876532211100
Q ss_pred EEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeecc---CCCcEEEEeeCCCcEEEEecCCCce---eeec
Q 047837 336 WDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC---TGGVSFSTCSADGTIRLWDLALQSE---LSKD 409 (882)
Q Consensus 336 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~---~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~ 409 (882)
. ..+...+.++++.. .....+++++.||.|++|++..... ....
T Consensus 208 --------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 208 --------------E----------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp --------------C----------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred --------------c----------------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 0 00011111111110 1223399999999999999987632 1110
Q ss_pred ccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCc
Q 047837 410 VLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSH 489 (882)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 489 (882)
..+. ..+.......|...|.+++|+|+++
T Consensus 258 -~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~sp~~~------------ 286 (368)
T 3mmy_A 258 -KCHR--------------------------------------SNGTNTSAPQDIYAVNGIAFHPVHG------------ 286 (368)
T ss_dssp -ECSE--------------------------------------EC----CCCEEECCEEEEEECTTTC------------
T ss_pred -eeee--------------------------------------cccccccccccccceEEEEEecCCC------------
Confidence 0000 0000111234556899999999988
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCc
Q 047837 490 YFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVV 550 (882)
Q Consensus 490 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 550 (882)
+|++|+.||.|++||+.++ .++..+.+|...|.+++|+|++++|++++.|+..+.|++.
T Consensus 287 -~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 287 -TLATVGSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -CEEEEETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred -EEEEEccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 8999999999999999987 7888999999999999999999999999998866665544
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.6e-28 Score=246.47 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=122.8
Q ss_pred eeccceEEEEEEec---CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCC---CCEEEEEEccCCCE
Q 047837 461 DAHDAEILSLSFSL---SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHS---AAVTAVKFTCNGRK 534 (882)
Q Consensus 461 ~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~ 534 (882)
.+|...+..++|++ ++. +|++|+.|++|+|||+.++ ++++++.+|. ..+.+++|+|+|++
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~-------------~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQE-------------ALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EECCCSSCEEEEEEEETSTT-------------EEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEE
T ss_pred ccCCCceeeEEeeccCCCCc-------------eEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 35666667777777 445 9999999999999999988 7888887654 46788899999988
Q ss_pred E------------EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCce
Q 047837 535 I------------LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKL 602 (882)
Q Consensus 535 l------------~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~ 602 (882)
+ ++++.|++|++||..++.....+.... ..+|...+.+..+ ++.++++++.|++|+|||+.++++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~-p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL-PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECC-CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSE
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec-cCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcE
Confidence 6 567889999999998765443221100 1123334444444 378999999999999999999999
Q ss_pred EEEEEeccCCCCcE-EEEECCCCCEEEEEeCCCcEEEEEc
Q 047837 603 IRSFKQAKDFGDPM-KVTVDPSGSYLVCSYSNKSICLYDF 641 (882)
Q Consensus 603 ~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~dg~i~iwd~ 641 (882)
+.++. +|...+. .++|||||++|++|+.|++|+|||+
T Consensus 318 l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99997 7776655 6899999999999999999999995
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=4.9e-29 Score=266.06 Aligned_cols=310 Identities=15% Similarity=0.143 Sum_probs=205.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc----eeeEEeeccccceeEEEECC--CCCEEEEEc--
Q 047837 36 HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL----AFISELKGHLYGVECIAFSP--DGEHLVTVG-- 107 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~----~~~~~l~~h~~~V~~lafsp--dg~~Las~~-- 107 (882)
..+.+|. +.|++++|+|++++||+|+. |+.|+|||+.++ +.+..+.+|...|.+++|+| |+++|++++
T Consensus 5 ~~~~gH~--~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 5 PFDSGHD--DLVHDVVYDFYGRHVATCSS--DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CEECCCS--SCEEEEEECSSSSEEEEEET--TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccCcccc--cceeEEEEcCCCCEEEEeeC--CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 4567898 89999999999999999965 899999999976 57778899999999999999 699999998
Q ss_pred CEEEEEEcCcc---------eeeeeeecCCcccceeEEEEccC--CCEEEEECC-CcEEEEEcccCccceeccccCccce
Q 047837 108 GYIYLWNWRSA---------MLVMKLKANSSCSAITSACFSSD--AKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESL 175 (882)
Q Consensus 108 ~~i~iWd~~~g---------~~~~~~~~~~~~~~v~~l~fs~d--~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (882)
+.|+|||+.++ +.+..+..|. ..|.+++|+|+ +++|++++. +.|++||+.++.... . +
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~------~ 150 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR--S------W 150 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT--C------C
T ss_pred CeEEEEecCCCcccccccCcceeeeecccC--CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc--c------c
Confidence 99999999987 5577777766 89999999999 999998875 899999998776511 1 0
Q ss_pred eecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecC---
Q 047837 176 TLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSAS--- 252 (882)
Q Consensus 176 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d--- 252 (882)
.......... .....+...+.+++|+|+
T Consensus 151 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~p~~~~ 181 (351)
T 3f3f_A 151 TLTSEMKVLS-------------------------------------------------IPPANHLQSDFCLSWCPSRFS 181 (351)
T ss_dssp EEEEEEESCS-------------------------------------------------CCCSSCSCCCEEEEECCCSSS
T ss_pred cccccccccc-------------------------------------------------cccCCcccceeEEEeccCCCC
Confidence 0000000000 000011223367788886
Q ss_pred CCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCce
Q 047837 253 SKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHS 332 (882)
Q Consensus 253 ~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~ 332 (882)
+.+|++++.++.+.+|+...++..
T Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 205 (351)
T 3f3f_A 182 PEKLAVSALEQAIIYQRGKDGKLH-------------------------------------------------------- 205 (351)
T ss_dssp CCEEEEEETTEEEEEEECTTSCEE--------------------------------------------------------
T ss_pred CcEEEEecCCCcEEEEccCCCcee--------------------------------------------------------
Confidence 778888887777766655432110
Q ss_pred EEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC----cEEEEeeCCCcEEEEecCCCceeee
Q 047837 333 LYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG----VSFSTCSADGTIRLWDLALQSELSK 408 (882)
Q Consensus 333 i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~----~~l~t~~~dg~i~vwd~~~~~~~~~ 408 (882)
....+ .+|...|++++|+ +++ ++|++++.||.|++||+..+.....
T Consensus 206 -------------~~~~~----------------~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 206 -------------VAAKL----------------PGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp -------------EEEEC----------------CCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred -------------eeeec----------------CCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 00112 2356677777887 666 8999999999999999986543221
Q ss_pred cccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCC
Q 047837 409 DVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDS 488 (882)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 488 (882)
... +...+......+... ..
T Consensus 256 ~~~---------------------------------------------------~~~~~~~~~~~~~~~---------~~ 275 (351)
T 3f3f_A 256 SEE---------------------------------------------------SLTNSNMFDNSADVD---------MD 275 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCC---------------------------------------------------cccceeccCCCcccc---------cc
Confidence 100 000000011111110 00
Q ss_pred ceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc
Q 047837 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA 555 (882)
Q Consensus 489 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 555 (882)
......+.....+.+|+.... ..+..+.+|...|++++|+|++++|++++.||.|++|++.+++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 276 AQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ---------------CCSEEE-EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cccccccccceeeeecccccc-cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 001222233445566665543 677888999999999999999999999999999999999866543
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=8.8e-29 Score=272.31 Aligned_cols=287 Identities=17% Similarity=0.339 Sum_probs=213.8
Q ss_pred EEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEE
Q 047837 248 ALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVV 327 (882)
Q Consensus 248 ~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~ 327 (882)
++.+++++|++|+.||.|++||+.+++....+. .+...+.+++| .+..++++
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------------------------~h~~~v~~l~~-~~~~l~sg 189 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---------------------------GHTGSVLCLQY-DERVIITG 189 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEEC---------------------------CCSSCEEEEEC-CSSEEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc---------------------------CCCCcEEEEEE-CCCEEEEE
Confidence 344589999999999999999999887765542 34455668888 33457778
Q ss_pred eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceee
Q 047837 328 YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELS 407 (882)
Q Consensus 328 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~ 407 (882)
+.||.|++||+.+++.. ..+.+ |...|.+++|+ +..+++++.||.|++||+.++....
T Consensus 190 ~~dg~i~vwd~~~~~~~---~~~~~----------------h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~ 247 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEML---NTLIH----------------HCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDIT 247 (435)
T ss_dssp ETTSCEEEEESSSCCEE---EEECC----------------CCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCE
T ss_pred cCCCeEEEEECCCCcEE---EEEcC----------------CCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCce
Confidence 88999999999876432 23444 44555566654 4589999999999999998765321
Q ss_pred ecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccC
Q 047837 408 KDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTD 487 (882)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 487 (882)
. .....+|...|.+++| ++.
T Consensus 248 ~------------------------------------------------~~~~~~~~~~v~~~~~--~~~---------- 267 (435)
T 1p22_A 248 L------------------------------------------------RRVLVGHRAAVNVVDF--DDK---------- 267 (435)
T ss_dssp E------------------------------------------------EEEECCCSSCEEEEEE--ETT----------
T ss_pred e------------------------------------------------eeEecCCCCcEEEEEe--CCC----------
Confidence 1 1235578889999998 344
Q ss_pred CceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceeccc
Q 047837 488 SHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 488 ~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
++++|+.||.|++||+.++ ..+..+.+|...|.++.| ++.++++++.||.|++||+.++.....+ ..|
T Consensus 268 ---~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~------~~h 335 (435)
T 1p22_A 268 ---YIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL------EGH 335 (435)
T ss_dssp ---EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE------CCC
T ss_pred ---EEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE------eCC
Confidence 8999999999999999887 788889999999999999 5789999999999999999976544433 234
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCc---------eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGK---------LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICL 638 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~i 638 (882)
...|.+++| ++.+|++++.||.|++||+.+++ ++..+. +|...|.+++| ++++|++++.||.|++
T Consensus 336 ~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 336 EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 578999999 78899999999999999998776 777776 89999999999 7889999999999999
Q ss_pred EEccCCeEEEEEccCCCCeEEEEEC
Q 047837 639 YDFISGEMVAKAMGHGEVITGVTFL 663 (882)
Q Consensus 639 wd~~~~~~~~~~~~h~~~v~~l~~s 663 (882)
||+.++....... ...+...+.|.
T Consensus 410 wd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 410 WDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp EC-----------------------
T ss_pred EECCCCCCcccCC-CCCCccceeee
Confidence 9998876554433 23445555554
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.7e-27 Score=262.36 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=222.9
Q ss_pred cEEEeecCCCeEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC
Q 047837 313 AIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA 391 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~ 391 (882)
+.+++|+|++++++++. ++.|++||+.+++...... .....+|...|.+++|+ +++.++++++.
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~~-~~~~~~~s~~~ 189 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISIP-EHNELWVSQMQ 189 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEEG-GGTEEEEEEGG
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEEc-CCCEEEEEECC
Confidence 44689999878777665 7899999998765321100 00123466677788886 78999999999
Q ss_pred CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEE
Q 047837 392 DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLS 471 (882)
Q Consensus 392 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~ 471 (882)
|+.|++||+.+++.+.. +..|...+.+++
T Consensus 190 d~~v~~~d~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~ 218 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKAT---------------------------------------------------VDLTGKWSKILL 218 (433)
T ss_dssp GTEEEEEETTTCCEEEE---------------------------------------------------EECSSSSEEEEE
T ss_pred CCEEEEEECCCceEEEE---------------------------------------------------EcCCCCCeeEEE
Confidence 99999999987654322 335677888899
Q ss_pred EecCCCCCccceeccCCceEE-EEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEe--------CCC
Q 047837 472 FSLSSKKDDVLEEVTDSHYFL-ASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCS--------ADR 542 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--------~dg 542 (882)
|+|+++ ++ ++++.++.|++||+.++ +.+..+..+ ..+.+++|+|++++|++++ .|+
T Consensus 219 ~~~~~~-------------~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 219 YDPIRD-------------LVYCSNWISEDISVIDRKTK-LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EETTTT-------------EEEEEETTTTEEEEEETTTT-EEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EcCCCC-------------EEEEEecCCCcEEEEECCCC-cEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 998887 55 56668999999999876 666666644 4599999999999999888 588
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEE-EEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVV-ITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
.|++||+.+++..... .+...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+
T Consensus 284 ~i~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s 353 (433)
T 3bws_A 284 RLGIYSMDKEKLIDTI-------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALS 353 (433)
T ss_dssp EEEEEETTTTEEEEEE-------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEEC
T ss_pred eEEEEECCCCcEEeec-------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEc
Confidence 9999999866443322 122478899999999755 666889999999999999888775 56789999999
Q ss_pred CCCCEEEEEeC---------------CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCC
Q 047837 622 PSGSYLVCSYS---------------NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG-DGLQRVKEKYG 685 (882)
Q Consensus 622 pdg~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~i~vwd~~~ 685 (882)
|+|++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++++. |+.|++|++.+
T Consensus 354 ~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 354 PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 99999988876 57999999999999988875 468999999999999998875 99999999864
No 112
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.9e-29 Score=264.14 Aligned_cols=250 Identities=16% Similarity=0.233 Sum_probs=183.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce--eeEEeeccccceeEEEECC--CCCEEEEEc--CE
Q 047837 36 HLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA--FISELKGHLYGVECIAFSP--DGEHLVTVG--GY 109 (882)
Q Consensus 36 ~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~--~~~~l~~h~~~V~~lafsp--dg~~Las~~--~~ 109 (882)
..+.+|. +.|.+++|+|+|++||+|+. |++|+|||+.+++ ++..|.+|.+.|.+++|++ ++++||+++ ++
T Consensus 7 ~~~~~H~--~~V~~v~~s~~g~~lasgs~--D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 7 TVDTSHE--DMIHDAQMDYYGTRLATCSS--DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ---------CCEEEEEECGGGCEEEEEET--TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred eeccccc--CeEEEeeEcCCCCEEEEEeC--CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 3457898 89999999999999999976 8999999998875 5678999999999999987 489999999 99
Q ss_pred EEEEEcCcce--eeeeeecCCcccceeEEEEccC--CCEEEEECC-CcEEEEEcccCccceeccccCccceeecCccccc
Q 047837 110 IYLWNWRSAM--LVMKLKANSSCSAITSACFSSD--AKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNL 184 (882)
Q Consensus 110 i~iWd~~~g~--~~~~~~~~~~~~~v~~l~fs~d--~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 184 (882)
|+|||+.+++ .+..+..|. ..|.+++|+|+ +.+|++++. +.|++|++..+..... ...+..|...+
T Consensus 83 v~iWd~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~-----~~~~~~h~~~v-- 153 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAGHD--SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV-----KKINNAHTIGC-- 153 (316)
T ss_dssp EEEECCSSSCCCEEEEECCCS--SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE-----CCBTTSSSSCB--
T ss_pred EEEEECCCCcceEEEEccCCC--CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce-----eeeeccccCCc--
Confidence 9999999874 555666665 89999999997 788999885 8999999976532000 01112233222
Q ss_pred cccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecC------------
Q 047837 185 GIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSAS------------ 252 (882)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d------------ 252 (882)
.+++|+|+
T Consensus 154 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 173 (316)
T 3bg1_A 154 ------------------------------------------------------------NAVSWAPAVVPGSLIDHPSG 173 (316)
T ss_dssp ------------------------------------------------------------CCCEECCCCCC------CCS
T ss_pred ------------------------------------------------------------ceEEEccccCCccccccccc
Confidence 34455554
Q ss_pred -----CCEEEEEecCCeEEeeecccce---ecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCC--
Q 047837 253 -----SKLIACACSNGAVHLFDIQSLK---HAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSE-- 322 (882)
Q Consensus 253 -----~~~l~~~~~dg~I~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-- 322 (882)
+++|++|+.|+.|++||+.... .... +..+...+.+++|+|++
T Consensus 174 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---------------------------l~~h~~~V~~v~~sp~~~~ 226 (316)
T 3bg1_A 174 QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK---------------------------LEAHSDWVRDVAWAPSIGL 226 (316)
T ss_dssp CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC---------------------------CBCCSSCEEEEECCCCSSC
T ss_pred cCccccceEEEecCCCeEEEEEeCCCCccceeee---------------------------cccCCCceEEEEecCCCCC
Confidence 5789999999999999987542 2211 22344556799999985
Q ss_pred --e-EEEEeCCceEEEEEcccccccc-eeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEE
Q 047837 323 --K-LVVVYGDHSLYVWDIHDVNEAT-RCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLW 398 (882)
Q Consensus 323 --~-ll~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vw 398 (882)
. +++++.|++|++|++.+..... ....+. .|...|.+++|+ +++++|++++.||+|++|
T Consensus 227 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~----------------~~~~~v~~v~~s-p~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 227 PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH----------------KFNDVVWHVSWS-ITANILAVSGGDNKVTLW 289 (316)
T ss_dssp SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE----------------ECSSCEEEEEEC-TTTCCEEEEESSSCEEEE
T ss_pred CCceEEEEcCCCeEEEEEccCccccchhhhhhh----------------cCCCcEEEEEEc-CCCCEEEEEcCCCeEEEE
Confidence 3 6677889999999987632110 111122 355677778887 899999999999999999
Q ss_pred ecCC
Q 047837 399 DLAL 402 (882)
Q Consensus 399 d~~~ 402 (882)
+...
T Consensus 290 ~~~~ 293 (316)
T 3bg1_A 290 KESV 293 (316)
T ss_dssp EECT
T ss_pred EECC
Confidence 9763
No 113
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.1e-29 Score=267.33 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=197.9
Q ss_pred CceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECC--CceeeEEeeccccceeEEEECCC--CCEEEEEc
Q 047837 32 STQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCA--NLAFISELKGHLYGVECIAFSPD--GEHLVTVG 107 (882)
Q Consensus 32 ~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~--t~~~~~~l~~h~~~V~~lafspd--g~~Las~~ 107 (882)
|+++..+.+|. +.|++++|+|++++||+|+. |+.|+|||+. +++.+..+.+|...|.+++|+++ +++|++++
T Consensus 1 G~~~~~~~~h~--~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 1 GSMVVIANAHN--ELIHDAVLDYYGKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp ----CCEEECC--CCEEEEEECSSSSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred CCccEEecCCc--ccEEEEEEcCCCCEEEEEEC--CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 35567788999 89999999999999999965 8899999998 77888899999999999999987 99999999
Q ss_pred --CEEEEEEcCcce--eeeeeecCCcccceeEEEEccC--CCEEEEECC-CcEEEEEcccCccceeccccCccceeecCc
Q 047837 108 --GYIYLWNWRSAM--LVMKLKANSSCSAITSACFSSD--AKFIVTAGK-KHLKFWTIGSSATARTRLNKGTESLTLHAK 180 (882)
Q Consensus 108 --~~i~iWd~~~g~--~~~~~~~~~~~~~v~~l~fs~d--~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (882)
+.|+|||+.+++ .+..+..|. ..|.+++|+|+ +++|++++. +.|++||+........ ..+..|.
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------~~~~~~~- 147 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------IIIDAHA- 147 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE------EEEECCT-
T ss_pred cCCEEEEEEcCCCceeEeeeecCCC--cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee------EEecCCC-
Confidence 999999999997 666666665 89999999999 899998875 8999999986643100 0111122
Q ss_pred cccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec---------
Q 047837 181 PVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA--------- 251 (882)
Q Consensus 181 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~--------- 251 (882)
..+.+++|+|
T Consensus 148 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 148 -------------------------------------------------------------IGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp -------------------------------------------------------------TCEEEEEECCCC-------
T ss_pred -------------------------------------------------------------CceEEEEEcCccccccccc
Confidence 2237888888
Q ss_pred ----CCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEE
Q 047837 252 ----SSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVV 327 (882)
Q Consensus 252 ----d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~ 327 (882)
++.+|++++.||.|++||+.+++....
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------------------------- 197 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------------------------------------------- 197 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEE-------------------------------------------------
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCccee-------------------------------------------------
Confidence 577777777777777777664321100
Q ss_pred eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCC---CcEEEEeeCCCcEEEEecCCCc
Q 047837 328 YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTG---GVSFSTCSADGTIRLWDLALQS 404 (882)
Q Consensus 328 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~---~~~l~t~~~dg~i~vwd~~~~~ 404 (882)
....+ .+|...|.+++|+ ++ +.+|++++.||.|++||+.++.
T Consensus 198 ------------------~~~~~----------------~~h~~~v~~~~~s-p~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 198 ------------------LESTL----------------EGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ------------------EEEEE----------------CCCSSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ------------------eEEEE----------------ecccCcEeEEEEC-CCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 00112 2356677778887 67 8999999999999999998754
Q ss_pred eeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcccee
Q 047837 405 ELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEE 484 (882)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 484 (882)
...... ......|...|.+++|+|+++
T Consensus 243 ~~~~~~----------------------------------------------~~~~~~~~~~v~~~~~s~~g~------- 269 (379)
T 3jrp_A 243 GPWKKT----------------------------------------------LLKEEKFPDVLWRASWSLSGN------- 269 (379)
T ss_dssp SCCEEE----------------------------------------------ESSSSCCSSCEEEEEECSSSC-------
T ss_pred ccceee----------------------------------------------eeccccCCCcEEEEEEcCCCC-------
Confidence 211100 000124788899999999988
Q ss_pred ccCCceEEEEEcCCCcEEEEEcCCC
Q 047837 485 VTDSHYFLASGGRDRTIHLYDVKRN 509 (882)
Q Consensus 485 ~~~~~~~l~~g~~dg~v~iwd~~~~ 509 (882)
+|++++.||.|++|++...
T Consensus 270 ------~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 270 ------VLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ------CEEEEESSSSEEEEEEEET
T ss_pred ------EEEEecCCCcEEEEeCCCC
Confidence 8999999999999999854
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.7e-28 Score=267.51 Aligned_cols=260 Identities=20% Similarity=0.251 Sum_probs=212.3
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
..|...|++++|++.++.+|++++.||.|++|++.......... +
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-~---------------------------------- 169 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-G---------------------------------- 169 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-C----------------------------------
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-c----------------------------------
Confidence 45889999999994447899999999999999997632110000 0
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCce------eEEEeecCC
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFD------LIESIDDHS 520 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~------~~~~~~~h~ 520 (882)
.......+.+|...|.+++|+|++. .+|++|+.||.|++||+..+.. ....+.+|.
T Consensus 170 ------~~~~~~~~~~h~~~v~~l~~~~~~~------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~ 231 (430)
T 2xyi_A 170 ------ECQPDLRLRGHQKEGYGLSWNPNLN------------GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231 (430)
T ss_dssp ------CCCCSEEEECCSSCCCCEEECTTST------------TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS
T ss_pred ------cCCCcEEecCCCCCeEEEEeCCCCC------------CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC
Confidence 0011234568999999999999875 2799999999999999987311 145677899
Q ss_pred CCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCc--cceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEE
Q 047837 521 AAVTAVKFTC-NGRKILSCSADRSLVVRDVVETN--SAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFS 596 (882)
Q Consensus 521 ~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd 596 (882)
..|.+++|+| ++.+|++++.|+.|++||+++.. ...... ..|...|++++|+|++. ++++++.|+.|++||
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-----DAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-----ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-----ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence 9999999999 78899999999999999998663 121111 24557999999999987 789999999999999
Q ss_pred ccC-CceEEEEEeccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEEccC--------------CeEEEEEccCCCCeEEE
Q 047837 597 IAA-GKLIRSFKQAKDFGDPMKVTVDPSGS-YLVCSYSNKSICLYDFIS--------------GEMVAKAMGHGEVITGV 660 (882)
Q Consensus 597 ~~~-~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l 660 (882)
+++ +..+..+. .|...|++++|+|+++ +|++++.|+.|+|||+.. .+.+..+.+|...|+++
T Consensus 307 ~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 384 (430)
T 2xyi_A 307 LRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384 (430)
T ss_dssp TTCTTSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE
T ss_pred CCCCCCCeEEee--cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE
Confidence 998 56677887 7899999999999985 699999999999999987 36788888999999999
Q ss_pred EECCCCC-EEEEEeCCCeEEEEeCCCC
Q 047837 661 TFLPDCK-HIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 661 ~~s~d~~-~l~s~~~dg~i~vwd~~~~ 686 (882)
+|+|+++ +|++++.||.|++|++...
T Consensus 385 ~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 385 SWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999 9999999999999999753
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1e-28 Score=262.81 Aligned_cols=277 Identities=14% Similarity=0.137 Sum_probs=226.6
Q ss_pred CCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 367 NMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 367 ~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
.+|...|.+++|+ +++.+|++++.||.|++|++.++.....
T Consensus 8 ~~h~~~v~~~~~s-~~~~~l~~~~~d~~v~iw~~~~~~~~~~-------------------------------------- 48 (342)
T 1yfq_A 8 QAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVD-------------------------------------- 48 (342)
T ss_dssp SCCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTEEE--------------------------------------
T ss_pred cCCCCcEEEEEEc-CCCCEEEEEcCCCeEEEEEeCCCCcccc--------------------------------------
Confidence 4688899999999 7899999999999999999986542100
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEc-CCCceeEEEeec--CCCCE
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDV-KRNFDLIESIDD--HSAAV 523 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~-~~~~~~~~~~~~--h~~~v 523 (882)
......|...|.+++|+|++. .+|++|+.||.|++||+ .++ ....+.+ |...|
T Consensus 49 ----------~~~~~~~~~~v~~~~~~~~~~------------~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~v 104 (342)
T 1yfq_A 49 ----------LLQSLRYKHPLLCCNFIDNTD------------LQIYVGTVQGEILKVDLIGSP--SFQALTNNEANLGI 104 (342)
T ss_dssp ----------EEEEEECSSCEEEEEEEESSS------------EEEEEEETTSCEEEECSSSSS--SEEECBSCCCCSCE
T ss_pred ----------ceeeeecCCceEEEEECCCCC------------cEEEEEcCCCeEEEEEeccCC--ceEeccccCCCCce
Confidence 112347889999999998753 16999999999999999 765 3467788 99999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCcc---------CccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 047837 524 TAVKFTCNGRKILSCSADRSLVVRDVVE---------TNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINS 594 (882)
Q Consensus 524 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i 594 (882)
.+++|+| +.+|++++.|+.|++||+.+ ...... ..+...+.+++|+|++ +++++.|+.|++
T Consensus 105 ~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~--l~~~~~d~~i~i 174 (342)
T 1yfq_A 105 CRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-------TKVKNKIFTMDTNSSR--LIVGMNNSQVQW 174 (342)
T ss_dssp EEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-------SSSCCCEEEEEECSSE--EEEEESTTEEEE
T ss_pred EEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-------EeeCCceEEEEecCCc--EEEEeCCCeEEE
Confidence 9999999 99999999999999999985 322221 2255799999999987 999999999999
Q ss_pred EEccC-CceEEEEEeccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEEccCC------eEEEEEccCCC---------Ce
Q 047837 595 FSIAA-GKLIRSFKQAKDFGDPMKVTVDP-SGSYLVCSYSNKSICLYDFISG------EMVAKAMGHGE---------VI 657 (882)
Q Consensus 595 wd~~~-~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~------~~~~~~~~h~~---------~v 657 (882)
||+++ +..........+...+.+++|+| +++++++++.||.|++|++... +.+..+.+|.. .|
T Consensus 175 ~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCE
T ss_pred EECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeE
Confidence 99998 65433333347888999999999 9999999999999999999887 77888888865 99
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCC--CCCcccEEEecCCCeEEEeccccc
Q 047837 658 TGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQ--PAALSPIIFCEEEDQKCRMDSVNM 718 (882)
Q Consensus 658 ~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~ 718 (882)
.+++|+|++++|++++.||.|++||+.+......+.. ...+..+. +++..++....+..
T Consensus 255 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred EEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 9999999999999999999999999998877766653 45555665 77777766655544
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.1e-28 Score=268.67 Aligned_cols=273 Identities=17% Similarity=0.239 Sum_probs=217.3
Q ss_pred cceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 373 v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
...+++++....++++++.||.|++|++........
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-------------------------------------------- 72 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-------------------------------------------- 72 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT--------------------------------------------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC--------------------------------------------
Confidence 345667633334455688999999999965432211
Q ss_pred CCCCEEEeeeccceEEEEEEec-CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc------eeEEEeecCCCCEEE
Q 047837 453 SRGSTLLLDAHDAEILSLSFSL-SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF------DLIESIDDHSAAVTA 525 (882)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~------~~~~~~~~h~~~v~~ 525 (882)
....+.+|.+.|.+++|+| ++. +|++|+.||.|++||+.++. ..+..+.+|...|.+
T Consensus 73 ---~~~~~~~h~~~V~~~~~~p~~~~-------------~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~ 136 (402)
T 2aq5_A 73 ---NVPLVCGHTAPVLDIAWCPHNDN-------------VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136 (402)
T ss_dssp ---TCCCBCCCSSCEEEEEECTTCTT-------------EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEE
T ss_pred ---CCceEecCCCCEEEEEeCCCCCC-------------EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEE
Confidence 0112558999999999999 777 99999999999999998753 457788899999999
Q ss_pred EEEccCC-CEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEE
Q 047837 526 VKFTCNG-RKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIR 604 (882)
Q Consensus 526 ~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~ 604 (882)
++|+|++ .+|++++.|+.|++||+.+++....+. ...|...|.+++|+|++++|++++.|+.|++||+++++.+.
T Consensus 137 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG----PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp EEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC----TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred EEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe----cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 9999998 699999999999999999765444331 02345799999999999999999999999999999999988
Q ss_pred EEEeccCCCC-cEEEEECCCCCEEEEE---eCCCcEEEEEccCCeE-EEEE-ccCCCCeEEEEECCCCCEEEEE-eCCCe
Q 047837 605 SFKQAKDFGD-PMKVTVDPSGSYLVCS---YSNKSICLYDFISGEM-VAKA-MGHGEVITGVTFLPDCKHIVSV-GGDGL 677 (882)
Q Consensus 605 ~~~~~~~~~~-v~~~~~spdg~~l~~~---~~dg~i~iwd~~~~~~-~~~~-~~h~~~v~~l~~s~d~~~l~s~-~~dg~ 677 (882)
.+. ..|.+. +..++|+|++++|++| +.|+.|++||+.+++. +... ..|...|.+++|+|++++|+++ +.||.
T Consensus 213 ~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 213 EKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 883 156555 8999999999999999 7899999999998654 3332 2477889999999999999755 57999
Q ss_pred EEEEeCCCCCC----CcccCCCCCcccEEEecCCCeE
Q 047837 678 QRVKEKYGILP----PRNFAQPAALSPIIFCEEEDQK 710 (882)
Q Consensus 678 i~vwd~~~~~~----~~~~~~~~~~~~~~~s~~~~~~ 710 (882)
|++||+.+... ...+.+...+..+.|+|++..+
T Consensus 292 i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 292 IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp EEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred EEEEEecCCCcceEeecccccCCcccceEEecccccc
Confidence 99999998763 2333455778889999886543
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-28 Score=267.45 Aligned_cols=208 Identities=9% Similarity=0.060 Sum_probs=161.0
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
|...|.+++|+ +++.+|++++.||.+++|++.+......
T Consensus 148 ~~~~v~~~~~s-p~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------------------------- 186 (450)
T 2vdu_B 148 FSKRPNAISIA-EDDTTVIIADKFGDVYSIDINSIPEEKF---------------------------------------- 186 (450)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTSCCCSSC----------------------------------------
T ss_pred CCCCceEEEEc-CCCCEEEEEeCCCcEEEEecCCcccccc----------------------------------------
Confidence 34567778887 7899999999999999999886653210
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEecC---CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE-eecCCCCEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFSLS---SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES-IDDHSAAVT 524 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~~h~~~v~ 524 (882)
....+.+|...|.+++|+|+ +. +|++|+.|+.|++||+.++ ..+.. +.+|...|.
T Consensus 187 -------~~~~~~~h~~~v~~~~~sp~~~~~~-------------~l~s~~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 187 -------TQEPILGHVSMLTDVHLIKDSDGHQ-------------FIITSDRDEHIKISHYPQC-FIVDKWLFGHKHFVS 245 (450)
T ss_dssp -------CCCCSEECSSCEEEEEEEECTTSCE-------------EEEEEETTSCEEEEEESCT-TCEEEECCCCSSCEE
T ss_pred -------cceeeecccCceEEEEEcCCCCCCc-------------EEEEEcCCCcEEEEECCCC-ceeeeeecCCCCceE
Confidence 00124578899999999998 76 8999999999999999887 44444 668999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccce-------------------ecccCCceEEEEEecCCCEEEE
Q 047837 525 AVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQ-------------------QLASQGTVYDMDIDPTMEVVIT 585 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~sp~~~~l~~ 585 (882)
+++|+ ++++|++++.|+.|++||+.+++....+..... .......+.+++|+|++++|++
T Consensus 246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 246 SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 99999 999999999999999999998765554432110 0022357899999999999999
Q ss_pred Ee-CCCcEEEEEc--cCC---ceEEEEEeccCCCCcEEEEECCCCCEEEEEeC------CCcEEEEEcc
Q 047837 586 VG-QDKKINSFSI--AAG---KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS------NKSICLYDFI 642 (882)
Q Consensus 586 ~~-~d~~v~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------dg~i~iwd~~ 642 (882)
++ .|+.|++||+ .++ +.+..+. .+ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 325 ~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 325 FVEATKCIIILEMSEKQKGDLALKQIIT--FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EETTCSEEEEEEECSSSTTCEEEEEEEE--CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EECCCCeEEEEEeccCCCCceeeccEec--cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99 8999999999 665 5666666 55 88999999996544444443 4557888765
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.9e-28 Score=256.58 Aligned_cols=304 Identities=13% Similarity=0.185 Sum_probs=207.8
Q ss_pred EEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEEEE
Q 047837 26 VYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHLVT 105 (882)
Q Consensus 26 vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las 105 (882)
||++.+++.+..+.+|. ..|.|++|||||++||+|+. + .++|||+.+++.+..... ..+..+++.+++.+++.
T Consensus 3 i~s~~~~~~~~~~~~h~--~~V~~v~fs~dg~~la~g~~--~-~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 75 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS--NPVTDYEFNQDQSCLILSTL--K-SFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAF 75 (355)
T ss_dssp ----------------C--CCCCEEEECTTSSEEEEECS--S-EEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEE
T ss_pred cccccccCCccccccCC--CceEEEEECCCCCEEEEEcC--C-EEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEE
Confidence 56777777777778898 89999999999999999953 4 489999999887765443 35889999999998865
Q ss_pred Ec---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccC-ccceeccccCccceeecCcc
Q 047837 106 VG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSS-ATARTRLNKGTESLTLHAKP 181 (882)
Q Consensus 106 ~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 181 (882)
.+ ++|+|||+.+++++..+..+ ..|.+++|+++. ++++.++.|++||+.+. +. .. .+..
T Consensus 76 ~~~~d~~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~--~~------~~~~---- 138 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDVSRIKVD---APVKDLFLSREF--IVVSYGDVISVFKFGNPWKR--IT------DDIR---- 138 (355)
T ss_dssp ECSSTTEEEEEETTTTEEEEEEECS---SCEEEEEECSSE--EEEEETTEEEEEESSTTCCB--SS------CCEE----
T ss_pred EECCccEEEEEECCCCcEEEEEECC---CceEEEEEcCCE--EEEEEcCEEEEEECCCCcee--eE------Eecc----
Confidence 54 79999999999999988744 789999998764 55667889999999876 32 00 0000
Q ss_pred ccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEE--E
Q 047837 182 VNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIAC--A 259 (882)
Q Consensus 182 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~--~ 259 (882)
....+++++ .++++ |
T Consensus 139 -------------------------------------------------------------~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 139 -------------------------------------------------------------FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp -------------------------------------------------------------EEEEEEEET--TEEEEEES
T ss_pred -------------------------------------------------------------CCceEEEEc--cEEEEeCC
Confidence 003455666 56666 6
Q ss_pred ecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcc
Q 047837 260 CSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIH 339 (882)
Q Consensus 260 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~ 339 (882)
+.+|.|++||+.+++...... ... .
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~--------------------------------------------------~~~-----~ 180 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQD--------------------------------------------------QGV-----Q 180 (355)
T ss_dssp SCTTCEEEEECCC-------------------------------------------------------------------
T ss_pred CcCcEEEEEECCCCCcccccc--------------------------------------------------ccc-----c
Confidence 889999999998754221100 000 0
Q ss_pred cccccce-eeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCc-EEEEecCCCceeeecccCCccce
Q 047837 340 DVNEATR-CCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGT-IRLWDLALQSELSKDVLGHESLN 417 (882)
Q Consensus 340 ~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~ 417 (882)
. ..... ...+ .+|...|.+++|+ +++++|++++.||+ |++||+.+++.+..
T Consensus 181 ~-~~~~p~~~~~----------------~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~~~~~~~~--------- 233 (355)
T 3vu4_A 181 Q-KAILGKGVLI----------------KAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTEDGVLVRE--------- 233 (355)
T ss_dssp -------CCEEE----------------CCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETTTCCEEEE---------
T ss_pred c-cccCcccEEE----------------EccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECCCCcEEEE---------
Confidence 0 00000 1122 3466777888888 79999999999998 99999998765432
Q ss_pred eeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEee-e-ccceEEEEEEecCCCCCccceeccCCceEEEEE
Q 047837 418 IEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLD-A-HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASG 495 (882)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g 495 (882)
+. + |...|.+++|+|+++ +|+++
T Consensus 234 ------------------------------------------~~~g~h~~~v~~~~~s~~~~-------------~l~s~ 258 (355)
T 3vu4_A 234 ------------------------------------------FRRGLDRADVVDMKWSTDGS-------------KLAVV 258 (355)
T ss_dssp ------------------------------------------EECTTCCSCEEEEEECTTSC-------------EEEEE
T ss_pred ------------------------------------------EEcCCCCCcEEEEEECCCCC-------------EEEEE
Confidence 22 3 889999999999988 99999
Q ss_pred cCCCcEEEEEcCCCce-eEEEe---------------------ecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc
Q 047837 496 GRDRTIHLYDVKRNFD-LIESI---------------------DDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN 553 (882)
Q Consensus 496 ~~dg~v~iwd~~~~~~-~~~~~---------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 553 (882)
+.|++|++||+..... ....+ ..+......++|++++++|++++.||.+++|++..++
T Consensus 259 s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 259 SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999999975311 11111 0112234679999999999999999999999987544
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.2e-28 Score=256.90 Aligned_cols=285 Identities=13% Similarity=0.132 Sum_probs=205.3
Q ss_pred CCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE-
Q 047837 308 PTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF- 386 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l- 386 (882)
.+...+.+++|+|||++++++.+..+++|+++..+... .. +...+..+++. ++++.+
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~-----~~----------------~~~~~~~~~~~-~~~~~~~ 74 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIM-----SQ----------------EMRHLSKVRML-HRTNYVA 74 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEE-----EE----------------ECSCCCEEEEC-TTSSEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceee-----ee----------------ecCCeEEEEEc-CCCCEEE
Confidence 45667789999999998888887779999987543211 11 11235556666 445555
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
++++.|++|++||+.+++.+.. + .+...
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~---------------------------------------------------~-~~~~~ 102 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSR---------------------------------------------------I-KVDAP 102 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEE---------------------------------------------------E-ECSSC
T ss_pred EEECCccEEEEEECCCCcEEEE---------------------------------------------------E-ECCCc
Confidence 6788889999999988765432 1 24557
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEE--EeCCCeE
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILS--CSADRSL 544 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~~~dg~i 544 (882)
|.+++++++. ++++ .++.|++||+.+..+.+..+.. ....+++++ .+++. ++.||.|
T Consensus 103 v~~v~~~~~~---------------~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 103 VKDLFLSREF---------------IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp EEEEEECSSE---------------EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred eEEEEEcCCE---------------EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 7888887653 3333 3678999999876334433333 444566776 66766 5889999
Q ss_pred EEEeCccCcccee---------eec-cceecccCCceEEEEEecCCCEEEEEeCCCc-EEEEEccCCceEEEEEeccCCC
Q 047837 545 VVRDVVETNSAYK---------ISR-RHQQLASQGTVYDMDIDPTMEVVITVGQDKK-INSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 545 ~vwd~~~~~~~~~---------~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
++||+.++..... +.. .....+|.+.|.+++|+|++++|++++.|++ |++||+++++++..+....|..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 9999986541100 000 2233456789999999999999999999998 9999999999999987323889
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE--EEEEc---------------------cCCCCeEEEEECCCCCEEE
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM--VAKAM---------------------GHGEVITGVTFLPDCKHIV 670 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~--~~~~~---------------------~h~~~v~~l~~s~d~~~l~ 670 (882)
.|.+++|+|+|++|++++.|++|++||++.+.. ...+. .+......++|++|+++|+
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~ 321 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV 321 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence 999999999999999999999999999976531 11110 1122346799999999999
Q ss_pred EEeCCCeEEEEeCCCCC
Q 047837 671 SVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 671 s~~~dg~i~vwd~~~~~ 687 (882)
+++.||.+++|++....
T Consensus 322 ~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 322 VWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EETTTTEEEEEEEEEET
T ss_pred EEeCCCeEEEEEEEcCC
Confidence 99999999999986543
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.8e-29 Score=290.16 Aligned_cols=253 Identities=18% Similarity=0.212 Sum_probs=211.3
Q ss_pred CCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 366 ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 366 ~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
..+|...|++++|+ +++++|++|+.||+|++||+..+....
T Consensus 5 l~gH~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~-------------------------------------- 45 (753)
T 3jro_A 5 ANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKL-------------------------------------- 45 (753)
T ss_dssp ---CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEE--------------------------------------
T ss_pred cccCcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCcc--------------------------------------
Confidence 35688888888888 889999999999999999987432110
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecC--CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeecCCCC
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLS--SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDDHSAA 522 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~h~~~ 522 (882)
...+.+|.+.|.+++|+++ +. ++++|+.||.|++||+.++. .....+.+|...
T Consensus 46 -----------~~~l~~h~~~V~~l~~s~~~~~~-------------~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~ 101 (753)
T 3jro_A 46 -----------IDTLTGHEGPVWRVDWAHPKFGT-------------ILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 101 (753)
T ss_dssp -----------EEEECCCSSCEEEEEECCTTSCS-------------EEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred -----------ceeccCCcCceEEEEecCCCCCC-------------EEEEEeCCCeEEEEECCCCcccccccccCCCCC
Confidence 1235689999999999987 66 99999999999999998862 266778889999
Q ss_pred EEEEEEccC--CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec-------------CCCEEEEEe
Q 047837 523 VTAVKFTCN--GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP-------------TMEVVITVG 587 (882)
Q Consensus 523 v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------------~~~~l~~~~ 587 (882)
|.+++|+|+ ++++++++.||.|++||+......... ....|...|.+++|+| ++.++++++
T Consensus 102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~----~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs 177 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (753)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE----EEECCSSCEEEEEECCCC---------CGGGCCEEEEE
T ss_pred eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee----EeecCCCceEEEEecCcccccccccccCCCCCEEEEEE
Confidence 999999999 999999999999999999876433222 2234567999999999 589999999
Q ss_pred CCCcEEEEEccCC----ceEEEEEeccCCCCcEEEEECCC---CCEEEEEeCCCcEEEEEccCCe-----EEEEEccCCC
Q 047837 588 QDKKINSFSIAAG----KLIRSFKQAKDFGDPMKVTVDPS---GSYLVCSYSNKSICLYDFISGE-----MVAKAMGHGE 655 (882)
Q Consensus 588 ~d~~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~spd---g~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~ 655 (882)
.||.|++||++++ .....+. +|...|++++|+|+ +++|++++.||.|++||+.+++ .+.....|..
T Consensus 178 ~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 255 (753)
T 3jro_A 178 ADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255 (753)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS
T ss_pred CCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC
Confidence 9999999999887 3445555 88999999999999 9999999999999999999864 3333455889
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 656 VITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 656 ~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
.|++++|+|+|++|++++.||.|++||+....
T Consensus 256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999999999999998543
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.4e-26 Score=249.41 Aligned_cols=333 Identities=15% Similarity=0.129 Sum_probs=231.9
Q ss_pred CEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCCCEE-EEEc--CEEEEEEcCcceeeeeeecCCcccce
Q 047837 57 RYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDGEHL-VTVG--GYIYLWNWRSAMLVMKLKANSSCSAI 133 (882)
Q Consensus 57 ~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~L-as~~--~~i~iWd~~~g~~~~~~~~~~~~~~v 133 (882)
.++++++ .|+.|++||+.+++++..+.+|.. +.+++|+|||++| ++++ +.|++||+.+++++..+..+ ..+
T Consensus 3 ~l~vs~~--~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v 76 (391)
T 1l0q_A 3 FAYIANS--ESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---SSP 76 (391)
T ss_dssp EEEEEET--TTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---SSE
T ss_pred EEEEEcC--CCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---CCc
Confidence 4566774 488999999999999999987754 8999999999987 5554 99999999999999988876 589
Q ss_pred eEEEEccCCCEEEEEC-C-CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCccccccc
Q 047837 134 TSACFSSDAKFIVTAG-K-KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQA 211 (882)
Q Consensus 134 ~~l~fs~d~~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (882)
.+++|+|++++|++++ + +.|++||+.+++... . +..+
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~--~------~~~~--------------------------------- 115 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG--T------VKTG--------------------------------- 115 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--E------EECS---------------------------------
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeEEE--E------EeCC---------------------------------
Confidence 9999999999886554 4 799999998765410 0 0000
Q ss_pred CceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEE-EEEecCCeEEeeecccceecccccccCcccCCCC
Q 047837 212 GESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLI-ACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGE 290 (882)
Q Consensus 212 ~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 290 (882)
..+.+++|+|++++| ++++.++.|++||+.+++.+..+.
T Consensus 116 ------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------- 155 (391)
T 1l0q_A 116 ------------------------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------- 155 (391)
T ss_dssp ------------------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------
T ss_pred ------------------------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe----------
Confidence 112678899999877 677778889999887655432221
Q ss_pred CccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCC
Q 047837 291 NDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHD 370 (882)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~ 370 (882)
. .
T Consensus 156 -------------------------------------------------------------~-----------------~ 157 (391)
T 1l0q_A 156 -------------------------------------------------------------V-----------------G 157 (391)
T ss_dssp -------------------------------------------------------------C-----------------C
T ss_pred -------------------------------------------------------------c-----------------C
Confidence 0 1
Q ss_pred CCcceeeeccCCCcEE-EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 371 PSVSCVARGCTGGVSF-STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 371 ~~v~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
..+.+++|+ ++++.+ ++++.|+.|++||+.+++....
T Consensus 158 ~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----------------------------------------- 195 (391)
T 1l0q_A 158 RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDT----------------------------------------- 195 (391)
T ss_dssp SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEE-----------------------------------------
T ss_pred CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEE-----------------------------------------
Confidence 123445555 566555 5667788888888876653321
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEc---CCCcEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG---RDRTIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~---~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
..+...+.+++|+|+++ ++++++ .++.|++||+.++ +.+..+..|. .+.++
T Consensus 196 -----------~~~~~~~~~~~~~~~g~-------------~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 196 -----------VKVEAAPSGIAVNPEGT-------------KAYVTNVDKYFNTVSMIDTGTN-KITARIPVGP-DPAGI 249 (391)
T ss_dssp -----------EECSSEEEEEEECTTSS-------------EEEEEEECSSCCEEEEEETTTT-EEEEEEECCS-SEEEE
T ss_pred -----------EecCCCccceEECCCCC-------------EEEEEecCcCCCcEEEEECCCC-eEEEEEecCC-CccEE
Confidence 12345677788888877 677776 6899999999886 6677777654 58899
Q ss_pred EEccCCCEE-EEEeCCCeEEEEeCccCccceeeeccceecccCC---------ceEEEEEecCC----------CEEEEE
Q 047837 527 KFTCNGRKI-LSCSADRSLVVRDVVETNSAYKISRRHQQLASQG---------TVYDMDIDPTM----------EVVITV 586 (882)
Q Consensus 527 ~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~sp~~----------~~l~~~ 586 (882)
+|+|++++| ++++.|+.|++||+.+++....+........... ......|+.+. ..+...
T Consensus 250 ~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~ 329 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDL 329 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEEC
T ss_pred EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeC
Confidence 999999988 5678899999999997665444432211110000 01111222221 235555
Q ss_pred eCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEE
Q 047837 587 GQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS 630 (882)
Q Consensus 587 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 630 (882)
+.|..+++||+.+|... .+.. ....|+++|.|.++.
T Consensus 330 ~~~~~~~~W~~~~g~~~------~~~~--~~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 330 SKDATEWKWDFGDGSSS------KKQN--PTHTYSETGIYTVRL 365 (391)
T ss_dssp CBSCSEEEEECSSSCEE------CSSS--CEECCSSCEEEEEEE
T ss_pred CCCceEEEEECCCCccc------CcCC--CeEEeCCCceEEEEE
Confidence 67889999999887642 1222 236799999988754
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.8e-26 Score=250.45 Aligned_cols=319 Identities=15% Similarity=0.144 Sum_probs=227.0
Q ss_pred ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEE-EeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCC
Q 047837 21 GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVA-AGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPD 99 (882)
Q Consensus 21 ~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la-~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspd 99 (882)
++.|.+||+++++.+..+.+|. .+.+++|+|||++|+ +++. ++.|++||+.+++.+..+..|. .+.+++|+||
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD 84 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred CCEEEEEECCCCeEEEEeecCC---CcceEEECCCCCEEEEECCC--CCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence 4799999999999998887774 599999999999874 5533 8899999999999999988665 8999999999
Q ss_pred CCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEE-EEECC-CcEEEEEcccCccceeccccCccc
Q 047837 100 GEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFI-VTAGK-KHLKFWTIGSSATARTRLNKGTES 174 (882)
Q Consensus 100 g~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l-~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 174 (882)
+++|+.++ +.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++. +.|++||+.+++.. ..
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~------ 153 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI--NT------ 153 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EE------
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEEeCC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--EE------
Confidence 99886555 89999999999998888765 678999999999977 56654 79999999776541 00
Q ss_pred eeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCC
Q 047837 175 LTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSK 254 (882)
Q Consensus 175 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 254 (882)
+..+ ..+.+++|+|+++
T Consensus 154 ~~~~---------------------------------------------------------------~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 154 VSVG---------------------------------------------------------------RSPKGIAVTPDGT 170 (391)
T ss_dssp EECC---------------------------------------------------------------SSEEEEEECTTSS
T ss_pred EecC---------------------------------------------------------------CCcceEEECCCCC
Confidence 0000 1116788899988
Q ss_pred EE-EEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceE
Q 047837 255 LI-ACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSL 333 (882)
Q Consensus 255 ~l-~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i 333 (882)
+| ++++.++.|++||+.+++....+.
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------------------- 197 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDTVK----------------------------------------------------- 197 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-----------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEe-----------------------------------------------------
Confidence 77 566778888888887654332111
Q ss_pred EEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee---CCCcEEEEecCCCceeeecc
Q 047837 334 YVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS---ADGTIRLWDLALQSELSKDV 410 (882)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~ 410 (882)
+...+.+++|+ +++++|++++ .++.|++||+.+++.+..
T Consensus 198 -----------------------------------~~~~~~~~~~~-~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~-- 239 (391)
T 1l0q_A 198 -----------------------------------VEAAPSGIAVN-PEGTKAYVTNVDKYFNTVSMIDTGTNKITAR-- 239 (391)
T ss_dssp -----------------------------------CSSEEEEEEEC-TTSSEEEEEEECSSCCEEEEEETTTTEEEEE--
T ss_pred -----------------------------------cCCCccceEEC-CCCCEEEEEecCcCCCcEEEEECCCCeEEEE--
Confidence 11234455565 6777777776 688999999887654321
Q ss_pred cCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCce
Q 047837 411 LGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHY 490 (882)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 490 (882)
+..| ..+.+++|+|+++
T Consensus 240 -------------------------------------------------~~~~-~~~~~~~~s~dg~------------- 256 (391)
T 1l0q_A 240 -------------------------------------------------IPVG-PDPAGIAVTPDGK------------- 256 (391)
T ss_dssp -------------------------------------------------EECC-SSEEEEEECTTSS-------------
T ss_pred -------------------------------------------------EecC-CCccEEEEccCCC-------------
Confidence 1122 2356677777776
Q ss_pred EE-EEEcCCCcEEEEEcCCCceeEEEeecCCCCEE---EEE------------EccCC----------CEEEEEeCCCeE
Q 047837 491 FL-ASGGRDRTIHLYDVKRNFDLIESIDDHSAAVT---AVK------------FTCNG----------RKILSCSADRSL 544 (882)
Q Consensus 491 ~l-~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~---~~~------------~s~~~----------~~l~s~~~dg~i 544 (882)
++ ++++.|+.|++||+.++ +.+..+..|..+.. .+. |+.+. ..+...+.|..+
T Consensus 257 ~l~~s~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTATN-TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred EEEEEcCCCCEEEEEECCCC-cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 45 77789999999999886 67777765544321 122 22221 345566778899
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV 586 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 586 (882)
++|++..+... .. .-....|+++|.+.++.
T Consensus 336 ~~W~~~~g~~~-----~~-------~~~~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 336 WKWDFGDGSSS-----KK-------QNPTHTYSETGIYTVRL 365 (391)
T ss_dssp EEEECSSSCEE-----CS-------SSCEECCSSCEEEEEEE
T ss_pred EEEECCCCccc-----Cc-------CCCeEEeCCCceEEEEE
Confidence 99999755421 11 11235788888877653
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=259.14 Aligned_cols=199 Identities=11% Similarity=0.083 Sum_probs=156.0
Q ss_pred eccceEEEEEEec--CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe-ecCCCCEEEEEEccCCCEEEEE
Q 047837 462 AHDAEILSLSFSL--SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI-DDHSAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 462 ~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~ 538 (882)
.|.+.|.+++|+| ++. ++++++.||.|++||+.++ ...... ..|...|.+++|+|++.+|++|
T Consensus 123 ~~~~~v~~~~~~~~~~~~-------------~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTE-------------YFIWADNRGTIGFQSYEDD-SQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp CCSSCEEEEECCC---CC-------------EEEEEETTCCEEEEESSSS-CEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCCCCC-------------EEEEEeCCCcEEEEECCCC-cEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 5668899999999 887 9999999999999999987 445444 3456689999999999999999
Q ss_pred eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec-cCCCCc--
Q 047837 539 SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA-KDFGDP-- 615 (882)
Q Consensus 539 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~v-- 615 (882)
+.||.|++||++++......... .|...|.+++|+|++.+|++++. +.|++||+++++.+..+... .|...+
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGT 263 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred cCCCEEEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccc
Confidence 99999999999977655222222 25589999999999999999995 49999999998876554310 122333
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEEccCCeEEEEEccCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeC
Q 047837 616 MKVTVDPSGSYLVCSYS-NKSICLYDFISGEMVAKAMGHGEVITGVTFLP---DCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 616 ~~~~~spdg~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~s~~~dg~i~vwd~ 683 (882)
.+++|+|+|++|++++. |+.|+||++.++...... .++..++|.+ +.+.|++++.||.++++-.
T Consensus 264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 264 VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 46999999999999988 999999999765432222 5677888988 8899999999999998754
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.2e-26 Score=253.47 Aligned_cols=309 Identities=12% Similarity=0.097 Sum_probs=212.0
Q ss_pred EEEEEECCCC--ceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE-----EeeccccceeEEE
Q 047837 23 VLVVYDVDSS--TQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS-----ELKGHLYGVECIA 95 (882)
Q Consensus 23 ~v~vwd~~~~--~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~-----~l~~h~~~V~~la 95 (882)
.|.++|.+++ +.+..+..+ ..+.+++|+|++++++++. .++.|++||+.+++.+. .+.+|...|.+++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~ 176 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG---FQPKSVRFIDNTRLAIPLL--EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS 176 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS---SCBCCCEESSSSEEEEEBT--TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcceEEEEEcCC---CCceEEEEeCCCeEEEEeC--CCCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence 5555666545 444555444 4577999999888888874 47899999999999887 4557999999999
Q ss_pred ECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC--CCcEEEEEcccCccceeccccC
Q 047837 96 FSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG--KKHLKFWTIGSSATARTRLNKG 171 (882)
Q Consensus 96 fspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~ 171 (882)
|+|+++++++++ +.|++||+.+++.+..+..+. ..+.+++|+|+++++++++ ++.|++||+.+++.. ...
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~--~~~-- 250 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG--KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI--RKT-- 250 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS--SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE--EEC--
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC--CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE--EEe--
Confidence 999999999998 999999999999999888766 8899999999999885444 489999999766541 100
Q ss_pred ccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEec
Q 047837 172 TESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSA 251 (882)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~ 251 (882)
..+ ..+.+++|+|
T Consensus 251 ----~~~---------------------------------------------------------------~~~~~~~~~~ 263 (433)
T 3bws_A 251 ----DKI---------------------------------------------------------------GLPRGLLLSK 263 (433)
T ss_dssp ----CCC---------------------------------------------------------------SEEEEEEECT
T ss_pred ----cCC---------------------------------------------------------------CCceEEEEcC
Confidence 000 1127899999
Q ss_pred CCCEEEEEec--------CCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe
Q 047837 252 SSKLIACACS--------NGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK 323 (882)
Q Consensus 252 d~~~l~~~~~--------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 323 (882)
++++|++++. ||.|++||+.+++....+
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------------------------------- 299 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------------------------------- 299 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------------------------------
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------------------------------
Confidence 9999998873 556666666544322111
Q ss_pred EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc-EEEEeeCCCcEEEEecCC
Q 047837 324 LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV-SFSTCSADGTIRLWDLAL 402 (882)
Q Consensus 324 ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~ 402 (882)
. |...+.+++|+ ++++ ++++++.|+.|++||+.+
T Consensus 300 ----------------------------~----------------~~~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 300 ----------------------------G----------------PPGNKRHIVSG-NTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp ----------------------------E----------------EEECEEEEEEC-SSTTEEEEEETTTTEEEEEETTT
T ss_pred ----------------------------c----------------CCCCcceEEEC-CCCCEEEEEecCCCEEEEEECCC
Confidence 1 11234456666 5664 556778889999999887
Q ss_pred CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccc
Q 047837 403 QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVL 482 (882)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 482 (882)
++...... ....+..++++|+++.+........- ..
T Consensus 335 ~~~~~~~~-------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~------~~------- 370 (433)
T 3bws_A 335 KKVQKSIP-------------------------------VFDKPNTIALSPDGKYLYVSCRGPNH------PT------- 370 (433)
T ss_dssp TEEEEEEE-------------------------------CSSSEEEEEECTTSSEEEEEECCCCC------TT-------
T ss_pred CcEEEEec-------------------------------CCCCCCeEEEcCCCCEEEEEecCCCc------cc-------
Confidence 65432210 01123344444444432221110000 00
Q ss_pred eeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC-CCeEEEEeCc
Q 047837 483 EEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA-DRSLVVRDVV 550 (882)
Q Consensus 483 ~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~ 550 (882)
..++++|+.||.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. |+.|++|+++
T Consensus 371 ------~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 371 ------EGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ------TCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ------cccccccccceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 012334444789999999886 66666665 567999999999999998775 9999999986
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=9e-26 Score=252.49 Aligned_cols=347 Identities=11% Similarity=0.067 Sum_probs=233.9
Q ss_pred ccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEEC--CCceeeEE
Q 047837 6 NIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDC--ANLAFISE 83 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~--~t~~~~~~ 83 (882)
.+++|++..+++-..++.|.+||..+++.+..+..+. .+.+++|||||++|++++. ++.|.+||+ .+++++.+
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~---~~~~v~~spdg~~l~v~~~--d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSASGRYLLVIGR--DARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST---TEEEEEECTTSCEEEEEET--TSEEEEEETTSSSCEEEEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc---ccceEEECCCCCEEEEECC--CCeEEEEECcCCCCcEEEE
Confidence 3577776422222225699999999999998887443 3899999999999999976 689999999 89999999
Q ss_pred eeccccceeEEEECC----CCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEE
Q 047837 84 LKGHLYGVECIAFSP----DGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFW 156 (882)
Q Consensus 84 l~~h~~~V~~lafsp----dg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iw 156 (882)
+. +...+..++||| ||++|++++ ++|.|||..+++++..+..+. ..+....|+++.
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g--~~~~~~~~~~~~-------------- 280 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG--MTVDTQTYHPEP-------------- 280 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE--ECSSSCCEESCC--------------
T ss_pred Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC--cccCccccccCC--------------
Confidence 98 455679999999 999999887 999999999999988876542 100000011100
Q ss_pred EcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceee
Q 047837 157 TIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVT 236 (882)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~ 236 (882)
T Consensus 281 -------------------------------------------------------------------------------- 280 (543)
T 1nir_A 281 -------------------------------------------------------------------------------- 280 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeeceeeeeEEEecCCCE-EEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEE
Q 047837 237 KSVDLKVKNGFALSASSKL-IACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIA 315 (882)
Q Consensus 237 ~~~~~~~~~~~~~s~d~~~-l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (882)
.+.++.++|++.. +++...++.|.+||..+++.+..
T Consensus 281 ------~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~------------------------------------- 317 (543)
T 1nir_A 281 ------RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV------------------------------------- 317 (543)
T ss_dssp ------CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-------------------------------------
T ss_pred ------ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-------------------------------------
Confidence 0134555665443 33444556666666654321110
Q ss_pred EeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe-eCCCc
Q 047837 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC-SADGT 394 (882)
Q Consensus 316 ~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~-~~dg~ 394 (882)
.. + . +...+..++|+ +++++|+++ ..+++
T Consensus 318 --------------------~~------------i-~----------------~~~~~~~~~~s-pdg~~l~va~~~~~~ 347 (543)
T 1nir_A 318 --------------------TS------------I-G----------------AAPFLHDGGWD-SSHRYFMTAANNSNK 347 (543)
T ss_dssp --------------------EE------------E-E----------------CCSSCCCEEEC-TTSCEEEEEEGGGTE
T ss_pred --------------------EE------------e-c----------------cCcCccCceEC-CCCCEEEEEecCCCe
Confidence 00 0 0 11123345555 566655444 45678
Q ss_pred EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEec
Q 047837 395 IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSL 474 (882)
Q Consensus 395 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~ 474 (882)
|.+||+.+++.+.....+. ..|.+....+ ++|
T Consensus 348 v~v~D~~tg~l~~~i~~g~-----------------------------------------------~ph~g~g~~~-~~p 379 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGK-----------------------------------------------TPHPGRGANF-VHP 379 (543)
T ss_dssp EEEEETTTTEEEEEEECSS-----------------------------------------------SBCCTTCEEE-EET
T ss_pred EEEEECCCCeEEEeeccCC-----------------------------------------------CCCCCCCccc-CCC
Confidence 8888887766543221110 0122211111 234
Q ss_pred CCCCCccceeccCCceEEEEEc-CCCcEEEEEcCCC------ceeEEEeecCCCCEEEEEEccCCCEEEEEe-------C
Q 047837 475 SSKKDDVLEEVTDSHYFLASGG-RDRTIHLYDVKRN------FDLIESIDDHSAAVTAVKFTCNGRKILSCS-------A 540 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~-~dg~v~iwd~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~ 540 (882)
++ +.+++++. .|++|.+||+.+. .+.++++..|...+..++|+|++++|++++ .
T Consensus 380 ~~------------g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 380 KY------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp TT------------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CC------------ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 32 22677775 6899999999871 578899999998999999999999999987 2
Q ss_pred CCeEEEEeCccCccceeeeccce---ecccCCceEEEEEecCCCEEEEEe-----CCCcEEEEEccCCceEEEEE
Q 047837 541 DRSLVVRDVVETNSAYKISRRHQ---QLASQGTVYDMDIDPTMEVVITVG-----QDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 541 dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~-----~d~~v~iwd~~~~~~~~~~~ 607 (882)
+++|.+||+.+.+...+...... ...+...+..++|+|+|+.++++. .|+.|.|||.++++++.+++
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 67999999998876634321110 112346899999999999888663 47999999999999999987
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.3e-27 Score=247.98 Aligned_cols=181 Identities=9% Similarity=0.023 Sum_probs=143.5
Q ss_pred EEEEEcCCCceeEEEeecCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec
Q 047837 501 IHLYDVKRNFDLIESIDDHSAAVTAVKFTC--NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP 578 (882)
Q Consensus 501 v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 578 (882)
+.+|++.++........+|...|.+++|+| ++++|++++.||+|++||++++........ .+...+.+++|+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~p 180 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHK 180 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-----CSSCCCCEEEECT
T ss_pred eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-----CCCCceEEEEECC
Confidence 456676665223333346888999999999 999999999999999999997665322211 2235799999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceE-EEEEecc-CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc---C
Q 047837 579 TMEVVITVGQDKKINSFSIAAGKLI-RSFKQAK-DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG---H 653 (882)
Q Consensus 579 ~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~-~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h 653 (882)
++.+|++|+.|+.|++||+++++.+ ..+. . |...|++++|+|+|.+|++++. +.|++||+++++.+..+.. |
T Consensus 181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 181 DSLLLALYSPDGILDVYNLSSPDQASSRFP--VDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp TSCEEEEECTTSCEEEEESSCTTSCCEECC--CCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-
T ss_pred CCCEEEEEcCCCEEEEEECCCCCCCccEEe--ccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccc
Confidence 9999999999999999999999987 7776 5 8999999999999999999994 5999999999876554443 4
Q ss_pred CCCeE--EEEECCCCCEEEEEeC-CCeEEEEeCCCCCCC
Q 047837 654 GEVIT--GVTFLPDCKHIVSVGG-DGLQRVKEKYGILPP 689 (882)
Q Consensus 654 ~~~v~--~l~~s~d~~~l~s~~~-dg~i~vwd~~~~~~~ 689 (882)
...+. +++|+|+|++|++++. |+.|++|++......
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 34444 6999999999999998 999999999765443
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.3e-26 Score=250.54 Aligned_cols=284 Identities=12% Similarity=0.053 Sum_probs=175.7
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC----
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST---- 320 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 320 (882)
....+.+++.+|++++.|++|++||..+++...... ...+. +|...|.+++|+|
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~---~~~~~-------------------gH~~~v~~v~~~p~~~~ 150 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV---LGGKS-------------------GHHNFVNDIDIADVYSA 150 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE---ECTTT-------------------SCSSCEEEEEEEEEECT
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee---ecccC-------------------CCCCceEEEEEcccccc
Confidence 456677888999999999999999998876543221 11223 4455566899987
Q ss_pred ----CCeE-EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcE
Q 047837 321 ----SEKL-VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTI 395 (882)
Q Consensus 321 ----~~~l-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i 395 (882)
|+++ ++++.|++|+|||+.++... ..+.+ |...|.+++|+|.+..+|++++.||+|
T Consensus 151 ~~~~d~~~las~s~D~tv~~Wd~~~~~~~---~~~~~----------------~~~~v~~v~~~p~~~~~l~~~~~d~~v 211 (393)
T 4gq1_A 151 DNRLAEQVIASVGDDCTLIIWRLTDEGPI---LAGYP----------------LSSPGISVQFRPSNPNQLIVGERNGNI 211 (393)
T ss_dssp TCSEEEEEEEEEETTSEEEEEEEETTEEE---EEEEE----------------CSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred ccCCCCCEEEEEECCCeEEEEECCCCcee---eeecC----------------CCCCcEEEEECCCCCceEEecCCCCEE
Confidence 6765 45677999999999765322 22333 456677788884445689999999999
Q ss_pred EEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEe-c
Q 047837 396 RLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFS-L 474 (882)
Q Consensus 396 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~-~ 474 (882)
++||+.+++.......... ............+........+|...+.++.|. +
T Consensus 212 ~~wd~~t~~~~~~~~~~~~--------------------------~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~ 265 (393)
T 4gq1_A 212 RIFDWTLNLSAEENSQTEL--------------------------VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS 265 (393)
T ss_dssp EEEETTCCC------------------------------------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred EEEECCCCcccccccccCC--------------------------cccceEEecccccceeeeecccccccceeeeeecC
Confidence 9999998765433211100 000011222222333334456788899999987 5
Q ss_pred CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcc
Q 047837 475 SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNS 554 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 554 (882)
++. .+++++.|+++++||+..+ .....+..|...+..+.+.|+.+.+....
T Consensus 266 dg~-------------~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 316 (393)
T 4gq1_A 266 DGS-------------GILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFP--------------- 316 (393)
T ss_dssp TTC-------------EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSC---------------
T ss_pred CCC-------------EEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccC---------------
Confidence 666 8999999999999999876 55666777777777777776643321110
Q ss_pred ceeeeccceecccCCceEEEEEec--CCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDP--TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
......|+| ++.++++|+.|+.|++||+.+++.+..+. .|...|.+++|+|||++||+++.
T Consensus 317 ---------------~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 317 ---------------SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--QLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp ---------------CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--ECSSCEEEEEECTTSSEEEEEES
T ss_pred ---------------cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--CCCCcEEEEEEcCCCCEEEEEeC
Confidence 111122333 44467788899999999999999888877 78889999999999999999987
Q ss_pred CCcEEEEEcc
Q 047837 633 NKSICLYDFI 642 (882)
Q Consensus 633 dg~i~iwd~~ 642 (882)
+| +.+|.+.
T Consensus 380 ~G-v~lvrL~ 388 (393)
T 4gq1_A 380 GS-VLLTRLM 388 (393)
T ss_dssp SE-EEEEEEG
T ss_pred CC-eEEEEEe
Confidence 76 6666653
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.1e-25 Score=246.82 Aligned_cols=265 Identities=12% Similarity=0.207 Sum_probs=200.7
Q ss_pred cCCCCCCcEEEeecCC-CeEEE-EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 306 LTPTIPNAIACQFSTS-EKLVV-VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 306 ~~~~~~~~~~~~~s~~-~~ll~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
..++...+.+++|+|+ +.+++ ++.+|.|++|++........ ..+....+ ....+|...|.+++|+ +++
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---~~~~~~~~------~~~~~h~~~v~~l~~~-~~~ 193 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---PSGECQPD------LRLRGHQKEGYGLSWN-PNL 193 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---TTCCCCCS------EEEECCSSCCCCEEEC-TTS
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---ccccCCCc------EEecCCCCCeEEEEeC-CCC
Confidence 3456778889999998 45554 55699999999976311000 00000011 1123577788888998 566
Q ss_pred c-EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeee
Q 047837 384 V-SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDA 462 (882)
Q Consensus 384 ~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 462 (882)
. +|++++.||.|++|++.......... .....+.+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------------------------------------~~~~~~~~ 229 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVI--------------------------------------------DAKNIFTG 229 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEE--------------------------------------------ECSEEECC
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCcee--------------------------------------------ccceeecC
Confidence 5 99999999999999998743211000 00123457
Q ss_pred ccceEEEEEEecC-CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc--eeEEEeecCCCCEEEEEEccCCC-EEEEE
Q 047837 463 HDAEILSLSFSLS-SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF--DLIESIDDHSAAVTAVKFTCNGR-KILSC 538 (882)
Q Consensus 463 ~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~~~-~l~s~ 538 (882)
|...|.+++|+|. +. ++++++.|+.|++||+++.. ..+..+..|...|++++|+|++. +|+++
T Consensus 230 h~~~v~~v~~~p~~~~-------------~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg 296 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHES-------------LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296 (430)
T ss_dssp CSSCEEEEEECSSCTT-------------EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCCEeeeEEeCCCCC-------------EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEE
Confidence 8999999999994 44 89999999999999998752 46677788999999999999887 68899
Q ss_pred eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCC-EEEEEeCCCcEEEEEccC--------------CceE
Q 047837 539 SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTME-VVITVGQDKKINSFSIAA--------------GKLI 603 (882)
Q Consensus 539 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~--------------~~~~ 603 (882)
+.||.|++||++.......... .|...|.+++|+|+++ +|++++.|+.|++||+.. .+++
T Consensus 297 ~~dg~v~vwd~~~~~~~~~~~~-----~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 371 (430)
T 2xyi_A 297 SADKTVALWDLRNLKLKLHSFE-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371 (430)
T ss_dssp ETTSEEEEEETTCTTSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE
T ss_pred eCCCeEEEEeCCCCCCCeEEee-----cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE
Confidence 9999999999987544333322 3457999999999995 799999999999999987 2455
Q ss_pred EEEEeccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEEccCC
Q 047837 604 RSFKQAKDFGDPMKVTVDPSGS-YLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 604 ~~~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~i~iwd~~~~ 644 (882)
..+. +|...|++++|+|+++ +|++++.||.|+||++..+
T Consensus 372 ~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 372 FIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 5554 7889999999999999 8999999999999998754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.7e-25 Score=248.60 Aligned_cols=341 Identities=11% Similarity=0.077 Sum_probs=247.6
Q ss_pred EEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-EEE
Q 047837 248 ALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK-LVV 326 (882)
Q Consensus 248 ~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-ll~ 326 (882)
+|+|++..+++++.+++|.+||..+++.+.++.. + ..+..++|+|||+ +++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-------g---------------------~~~~~v~~spdg~~l~v 195 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-------G---------------------YAVHISRMSASGRYLLV 195 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-------S---------------------TTEEEEEECTTSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-------C---------------------cccceEEECCCCCEEEE
Confidence 5899999999999999999999999988766641 1 1145789999997 556
Q ss_pred EeCCceEEEEEc--ccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccC----CCcEEEEeeC-CCcEEEEe
Q 047837 327 VYGDHSLYVWDI--HDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCT----GGVSFSTCSA-DGTIRLWD 399 (882)
Q Consensus 327 ~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~----~~~~l~t~~~-dg~i~vwd 399 (882)
++.|+.|++||+ .+++... .+. +...+..++|+ + +++++++++. +++|.+||
T Consensus 196 ~~~d~~V~v~D~~~~t~~~~~---~i~-----------------~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 196 IGRDARIDMIDLWAKEPTKVA---EIK-----------------IGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp EETTSEEEEEETTSSSCEEEE---EEE-----------------CCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEE
T ss_pred ECCCCeEEEEECcCCCCcEEE---EEe-----------------cCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEe
Confidence 677999999999 5543221 222 12345677787 7 8999888874 89999999
Q ss_pred cCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc-ceEEEEEEecCCCC
Q 047837 400 LALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD-AEILSLSFSLSSKK 478 (882)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~v~~~~~~~~~~~ 478 (882)
..+.+.+....... ...++. ..|. ..+..+.+++++.
T Consensus 255 ~~t~~~~~~i~~~g-------------------------------------~~~~~~----~~~~~~~v~~i~~s~~~~- 292 (543)
T 1nir_A 255 GETLEPKQIVSTRG-------------------------------------MTVDTQ----TYHPEPRVAAIIASHEHP- 292 (543)
T ss_dssp TTTCCEEEEEECCE-------------------------------------ECSSSC----CEESCCCEEEEEECSSSS-
T ss_pred ccccccceeecccC-------------------------------------cccCcc----ccccCCceEEEEECCCCC-
Confidence 98877654321100 000000 0122 2567777777655
Q ss_pred CccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE-eCCCeEEEEeCccCcccee
Q 047837 479 DDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC-SADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~ 557 (882)
.++++...++.|.+||..+...+......+...+.+++|+|+|++|+++ ..+++|.+||..+++....
T Consensus 293 -----------~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 293 -----------EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp -----------EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred -----------EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 3778888999999999987533222222466778899999999987655 4688999999998765444
Q ss_pred eeccceecccCCceEEEEEecC-CCEEEEEe-CCCcEEEEEccC-------CceEEEEEeccCCCCcEEEEECCCCCEEE
Q 047837 558 ISRRHQQLASQGTVYDMDIDPT-MEVVITVG-QDKKINSFSIAA-------GKLIRSFKQAKDFGDPMKVTVDPSGSYLV 628 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~-~d~~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 628 (882)
+... ...|.+....+ ++|+ +..++++. .|++|.+||+.+ +++++++. .|...+..++|+|||++|+
T Consensus 362 i~~g--~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~--~~g~~~~~v~~~pdg~~l~ 436 (543)
T 1nir_A 362 VDVG--KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--GQGGGSLFIKTHPKSSHLY 436 (543)
T ss_dssp EECS--SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--CSCSCCCCEECCTTCCEEE
T ss_pred eccC--CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE--cCCCCceEEEcCCCCCcEE
Confidence 4321 12233333333 5787 56666665 589999999998 89999998 7778889999999999999
Q ss_pred EEe-------CCCcEEEEEccCCeEE-EEE--------ccCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEeCCCCC
Q 047837 629 CSY-------SNKSICLYDFISGEMV-AKA--------MGHGEVITGVTFLPDCKHIVSVG-----GDGLQRVKEKYGIL 687 (882)
Q Consensus 629 ~~~-------~dg~i~iwd~~~~~~~-~~~--------~~h~~~v~~l~~s~d~~~l~s~~-----~dg~i~vwd~~~~~ 687 (882)
+++ .+++|.|||+.+++.. ..+ ..+...+..+.|+|||+.|+.+. .|+.|.|||..+.+
T Consensus 437 v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 437 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 987 2679999999998876 443 34678899999999999988762 47999999999988
Q ss_pred CCcccCCC
Q 047837 688 PPRNFAQP 695 (882)
Q Consensus 688 ~~~~~~~~ 695 (882)
....+..+
T Consensus 517 ~~~~i~~~ 524 (543)
T 1nir_A 517 LKAVVKDP 524 (543)
T ss_dssp EEEEECCT
T ss_pred EEEeecCC
Confidence 87766544
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.5e-26 Score=264.80 Aligned_cols=244 Identities=15% Similarity=0.188 Sum_probs=202.5
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCC-ceeEEEeecCCCCEEEEEEccC--CCEE
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRN-FDLIESIDDHSAAVTAVKFTCN--GRKI 535 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~--~~~l 535 (882)
++.+|.+.|++++|+|+++ ++++|+.||.|++||+..+ ......+.+|...|.+++|+|+ +++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~-------------~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l 70 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGK-------------RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL 70 (753)
T ss_dssp ----CCCCEEEECCCSSSC-------------CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEE
T ss_pred ecccCcceeEEEEECCCCC-------------eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEE
Confidence 4679999999999999988 8999999999999999742 3667788899999999999987 9999
Q ss_pred EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecC--CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCC
Q 047837 536 LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPT--MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFG 613 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 613 (882)
++++.||.|++||+.++.... ......|...|.+++|+|+ +.++++++.||.|++||+.++.........+|..
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRWSQ----IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp EEEETTSCEEEEEEETTEEEE----EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred EEEeCCCeEEEEECCCCcccc----cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 999999999999998654111 1122345689999999999 9999999999999999999875433333348899
Q ss_pred CcEEEEECC-------------CCCEEEEEeCCCcEEEEEccCC----eEEEEEccCCCCeEEEEECCC---CCEEEEEe
Q 047837 614 DPMKVTVDP-------------SGSYLVCSYSNKSICLYDFISG----EMVAKAMGHGEVITGVTFLPD---CKHIVSVG 673 (882)
Q Consensus 614 ~v~~~~~sp-------------dg~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s~d---~~~l~s~~ 673 (882)
.|.+++|+| ++.+|++|+.||.|++||++++ ..+..+.+|...|++++|+|+ +++|++++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 999999999 5999999999999999999887 667788899999999999999 99999999
Q ss_pred CCCeEEEEeCCCCC------CCcccCCCCCcccEEEecCCCeEEEecccccc
Q 047837 674 GDGLQRVKEKYGIL------PPRNFAQPAALSPIIFCEEEDQKCRMDSVNMS 719 (882)
Q Consensus 674 ~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 719 (882)
.||.|++||+.... ......+...+..+.|+|++..++.....+..
T Consensus 227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 99999999998763 22223456678889999998877776655544
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.9e-24 Score=233.22 Aligned_cols=311 Identities=15% Similarity=0.132 Sum_probs=216.0
Q ss_pred eeeEEEecCCC-EEEEEe----cCC----eEEeeec--ccceecccccccCcccCCCCCccccchhhhcc---ccccCCC
Q 047837 244 KNGFALSASSK-LIACAC----SNG----AVHLFDI--QSLKHAGTLHYSEAKKCNGENDTVSTAKATEL---YFKLTPT 309 (882)
Q Consensus 244 ~~~~~~s~d~~-~l~~~~----~dg----~I~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 309 (882)
+....|.+.+. .+++|+ .+| .|++||+ .+++.+.... +.+|...+........ ...+.+.
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS------YKVNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE------EEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE------EEcChhHHHHHHHHHHHHHHHHHcCC
Confidence 35567777765 555765 467 8999999 8887653321 1233333321111000 0000000
Q ss_pred CCCcEEEeecCCCeEEEEeCC------ceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCC
Q 047837 310 IPNAIACQFSTSEKLVVVYGD------HSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGG 383 (882)
Q Consensus 310 ~~~~~~~~~s~~~~ll~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~ 383 (882)
.. ..+++++.++.+ +.|++||++... ...+.+ |...+.+++|+ |++
T Consensus 139 ~~-------~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~----~~~l~~----------------~~~~v~~~~~S-pdg 190 (415)
T 2hqs_A 139 KG-------AFRTRIAYVVQTNGGQFPYELRVSDYDGYN----QFVVHR----------------SPQPLMSPAWS-PDG 190 (415)
T ss_dssp CC-------CTTCEEEEEEECSSSSCCEEEEEEETTSCS----CEEEEE----------------ESSCEEEEEEC-TTS
T ss_pred CC-------cCCCEEEEEEecCCCCccceEEEEcCCCCC----CEEEeC----------------CCCcceeeEEc-CCC
Confidence 00 013455555543 799999997432 123333 44566777787 899
Q ss_pred cEEEEeeCCC---cEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEe
Q 047837 384 VSFSTCSADG---TIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLL 460 (882)
Q Consensus 384 ~~l~t~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 460 (882)
+.|++++.|+ .|++||+.+++.. .+
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~----------------------------------------------------~l 218 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVR----------------------------------------------------QV 218 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE----------------------------------------------------EE
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEE----------------------------------------------------Ee
Confidence 9999999875 9999999876532 13
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEE-EEcCCCc--EEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEE
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLA-SGGRDRT--IHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 537 (882)
..|...+.+++|+|+++ .|+ +++.++. |++||+.++ + ...+..|...+.+++|+|||++|++
T Consensus 219 ~~~~~~~~~~~~spdg~-------------~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGS-------------KLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp ECCSSCEEEEEECTTSS-------------EEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTTSSEEEE
T ss_pred ecCCCcccCEEEcCCCC-------------EEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCCCCEEEE
Confidence 34566788888888887 666 6666654 999999875 3 3567788899999999999999998
Q ss_pred EeC-CC--eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC---CcEEEEEccCCceEEEEEeccC
Q 047837 538 CSA-DR--SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD---KKINSFSIAAGKLIRSFKQAKD 611 (882)
Q Consensus 538 ~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~ 611 (882)
++. ++ .|++||+.++.. ..+. .+...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+. .+
T Consensus 284 ~s~~~g~~~i~~~d~~~~~~-~~l~------~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~--~~ 353 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNINGGAP-QRIT------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS--ST 353 (415)
T ss_dssp EECTTSSCEEEEEETTSSCC-EECC------CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC--CS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEe------cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec--CC
Confidence 876 44 677778876542 2221 223578899999999999988864 58999999988774 343 34
Q ss_pred CCCcEEEEECCCCCEEEEEeCCC---cEEEEEccCCeEEEEEccCCCCeEEEEECCCCC
Q 047837 612 FGDPMKVTVDPSGSYLVCSYSNK---SICLYDFISGEMVAKAMGHGEVITGVTFLPDCK 667 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~ 667 (882)
. .+..++|+|||++|++++.++ .|++||+. +..+..+.+|.+.|.+++|+|.-.
T Consensus 354 ~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 354 F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 3 899999999999999888777 79999986 556778889999999999999754
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=6.5e-24 Score=250.91 Aligned_cols=371 Identities=14% Similarity=0.125 Sum_probs=242.3
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCC-----eEEEEECCCceeeEEeecccc------------------------ceeEEE
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQP-----AVLVWDCANLAFISELKGHLY------------------------GVECIA 95 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~-----~I~vwd~~t~~~~~~l~~h~~------------------------~V~~la 95 (882)
..|.+++|||||++||+++.. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~-d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGK-DSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECC-SSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCceEecCCCEEEEEecc-CCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 579999999999999998641 45 899999999998777765543 389999
Q ss_pred ECCCCCEEEEEc-CEEEEEEcCcce--eeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCc
Q 047837 96 FSPDGEHLVTVG-GYIYLWNWRSAM--LVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGT 172 (882)
Q Consensus 96 fspdg~~Las~~-~~i~iWd~~~g~--~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~ 172 (882)
|||||++|++++ +.|++||+.++. .+..+..+. ..+..++|+|||++|+.++++.|.+||+.+++. .++...
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~--~~~~~~- 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQ--MQLTAD- 190 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECTTSSEEEEEETTEEEEEETTTTEE--EECCCC-
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCC--cccccccCCCCCCEEEEEeCCcEEEEecCCCCE--EEeccC-
Confidence 999999999999 999999999883 344455554 789999999999999999989999999987655 111110
Q ss_pred cceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecC
Q 047837 173 ESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSAS 252 (882)
Q Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d 252 (882)
+...+..+ ...|.... ....+..++|+||
T Consensus 191 -----~~~~~~~g-----------~~~~v~~~-----------------------------------~~~~~~~~~~SpD 219 (741)
T 2ecf_A 191 -----GSTTIGNG-----------IAEFVADE-----------------------------------EMDRHTGYWWAPD 219 (741)
T ss_dssp -----CCSSEEES-----------CCCHHHHH-----------------------------------HSCCCCSEEECTT
T ss_pred -----Cccceecc-----------ccceeeee-----------------------------------ccccccceEECCC
Confidence 00000000 00000000 0011267899999
Q ss_pred CCEEEEEecCC-eEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCc
Q 047837 253 SKLIACACSNG-AVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDH 331 (882)
Q Consensus 253 ~~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~ 331 (882)
|++|++++.|+ .+..|+... . . +.......+.|...|. .....
T Consensus 220 g~~l~~~~~d~~~~~~~~~~~--~---~----------------------------p~~~~~~~~~~~~~g~---~~~~~ 263 (741)
T 2ecf_A 220 DSAIAYARIDESPVPVQKRYE--V---Y----------------------------ADRTDVIEQRYPAAGD---ANVQV 263 (741)
T ss_dssp SSCEEEEEEECTTSCEEEEEE--E---C----------------------------SSCEEEEEEECCBTTS---CCCEE
T ss_pred CCEEEEEEEcCCCCceEecCC--C---C----------------------------CCcccceEeecCCCCC---CCCee
Confidence 99999987653 444444110 0 0 0000112233433331 01123
Q ss_pred eEEEEEccc-ccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC-----CCcEEEEecCCCce
Q 047837 332 SLYVWDIHD-VNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA-----DGTIRLWDLALQSE 405 (882)
Q Consensus 332 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~-----dg~i~vwd~~~~~~ 405 (882)
.|++||+.+ ++... ...+ ..|...+..++| +||+.|++++. +..|.+||+.+++.
T Consensus 264 ~l~~~d~~~~~~~~~---~~~~--------------~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 264 KLGVISPAEQAQTQW---IDLG--------------KEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp EEEEECSSTTCCCEE---ECCC--------------SCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred EEEEEECCCCCceEE---ecCC--------------CCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 678888876 54211 1110 124556677788 57888876653 56799999987654
Q ss_pred eeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc----eEEEEEEecCCCCCcc
Q 047837 406 LSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA----EILSLSFSLSSKKDDV 481 (882)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~ 481 (882)
... +..+.. .+..++|+|+++
T Consensus 325 ~~~---------------------------------------------------~~~~~~~~~~~~~~~~~spdg~---- 349 (741)
T 2ecf_A 325 RVL---------------------------------------------------AHETSPTWVPLHNSLRFLDDGS---- 349 (741)
T ss_dssp EEE---------------------------------------------------EEEECSSCCCCCSCCEECTTSC----
T ss_pred EEE---------------------------------------------------EEcCCCCcCCcCCceEECCCCe----
Confidence 321 111111 234567777776
Q ss_pred ceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEE-EEccCCCEEEE-EeCCC--eEEEEeCccCcc-ce
Q 047837 482 LEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAV-KFTCNGRKILS-CSADR--SLVVRDVVETNS-AY 556 (882)
Q Consensus 482 ~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s-~~~dg--~i~vwd~~~~~~-~~ 556 (882)
++++++.+|.++||.+..... ...+..|...|..+ .|+|+++.|+. ++.++ .+++|++..... ..
T Consensus 350 ---------~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 350 ---------ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp ---------EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred ---------EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 889999999888888764334 67788888889887 59999998765 44454 899999875332 22
Q ss_pred eeeccceecccCCceEEEEEecCCCEEEEEeCC----CcEEEEEccC
Q 047837 557 KISRRHQQLASQGTVYDMDIDPTMEVVITVGQD----KKINSFSIAA 599 (882)
Q Consensus 557 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~ 599 (882)
.+.. ...+..++|+|||++|+....+ ..+.+||...
T Consensus 420 ~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 420 RLSK-------APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp ECCC-------SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred eccc-------CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 2211 2467899999999988876544 4688998754
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2e-23 Score=226.74 Aligned_cols=306 Identities=12% Similarity=0.076 Sum_probs=219.6
Q ss_pred EEEeecCCCe-EE-EEe----CCc----eEEEEEc--ccccccceeeeeecCcceeeeecccCC------CCCCCCCcce
Q 047837 314 IACQFSTSEK-LV-VVY----GDH----SLYVWDI--HDVNEATRCCVLVSHSACIWDIKNLGC------ENMHDPSVSC 375 (882)
Q Consensus 314 ~~~~~s~~~~-ll-~~~----~d~----~i~iwd~--~~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~h~~~v~~ 375 (882)
....|.+.|. ++ +++ .+| .+++||+ .+++.. ....+.+|...+..+.+... ..++..
T Consensus 66 ~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~---- 140 (415)
T 2hqs_A 66 QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG---- 140 (415)
T ss_dssp CHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC----
T ss_pred CHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC----
Confidence 3456777774 44 443 367 8999999 776532 12346666665554433100 000000
Q ss_pred eeeccCCCcEEEEeeCC------CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 376 VARGCTGGVSFSTCSAD------GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 376 ~~~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
..+..++.++.+ +.|++||+.....
T Consensus 141 -----~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-------------------------------------------- 171 (415)
T 2hqs_A 141 -----AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-------------------------------------------- 171 (415)
T ss_dssp -----CTTCEEEEEEECSSSSCCEEEEEEETTSCSC--------------------------------------------
T ss_pred -----cCCCEEEEEEecCCCCccceEEEEcCCCCCC--------------------------------------------
Confidence 124556655544 7999999974321
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCC---cEEEEEcCCCceeEEEeecCCCCEEEE
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDR---TIHLYDVKRNFDLIESIDDHSAAVTAV 526 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~h~~~v~~~ 526 (882)
..+..|...+.+++|+|+++ .|++++.++ .|++||+.++ +. ..+..|...+.++
T Consensus 172 --------~~l~~~~~~v~~~~~Spdg~-------------~la~~s~~~~~~~i~~~d~~tg-~~-~~l~~~~~~~~~~ 228 (415)
T 2hqs_A 172 --------FVVHRSPQPLMSPAWSPDGS-------------KLAYVTFESGRSALVIQTLANG-AV-RQVASFPRHNGAP 228 (415)
T ss_dssp --------EEEEEESSCEEEEEECTTSS-------------EEEEEECTTSSCEEEEEETTTC-CE-EEEECCSSCEEEE
T ss_pred --------EEEeCCCCcceeeEEcCCCC-------------EEEEEEecCCCcEEEEEECCCC-cE-EEeecCCCcccCE
Confidence 12446788899999999988 888888775 9999999876 33 3566788899999
Q ss_pred EEccCCCEEE-EEeCCCe--EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CC--cEEEEEccCC
Q 047837 527 KFTCNGRKIL-SCSADRS--LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DK--KINSFSIAAG 600 (882)
Q Consensus 527 ~~s~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~~~~ 600 (882)
+|+|||++|+ +++.++. |++||+.++.. ..+ ..+...+.+++|+|||++|++++. ++ .|.+||+.++
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence 9999999888 6665554 99999986543 222 223468999999999999988876 44 6888899887
Q ss_pred ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCC-
Q 047837 601 KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN---KSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG- 676 (882)
Q Consensus 601 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg- 676 (882)
+.. .+. .+...+..++|+|||++|++++.+ ..|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+
T Consensus 302 ~~~-~l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 302 APQ-RIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp CCE-ECC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred CEE-EEe--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence 643 333 456678899999999999988764 58999999998874 455554 899999999999999998777
Q ss_pred --eEEEEeCCCCCCCcccCCCCCcccEEEecCCC
Q 047837 677 --LQRVKEKYGILPPRNFAQPAALSPIIFCEEED 708 (882)
Q Consensus 677 --~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 708 (882)
.|++||+.+........+...+..+.|+|...
T Consensus 377 ~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 377 GSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 89999998655444445556788888888764
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=5e-23 Score=242.68 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=96.8
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCC-CCeEEEEEcCCCCEEEEeecCC-------CCeEEEEE
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMP-KPLCCVAMSRDGRYVAAGESGP-------QPAVLVWD 74 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~-~~I~~va~spdg~~la~g~~~~-------d~~I~vwd 74 (882)
+..++|+|||+ .++...++.|.+||+.+++....+.+|... ..|.+++|||||++||+++.+. ++.|.+||
T Consensus 19 ~~~~~~spdg~-~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTE-FIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSC-BCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCc-EEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 56789999988 443345679999999999988887666510 1499999999999999986421 37899999
Q ss_pred CCCceeeEEee---ccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeec
Q 047837 75 CANLAFISELK---GHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKA 126 (882)
Q Consensus 75 ~~t~~~~~~l~---~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~ 126 (882)
+.+++. ..+. +|...+..++|||||++||+++ +.|++||+.+++.......
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC
Confidence 999876 3343 4556699999999999999999 9999999999887665443
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=6.8e-23 Score=242.22 Aligned_cols=382 Identities=10% Similarity=0.050 Sum_probs=230.7
Q ss_pred eeeeEEEecCCCEEEEEec-CC-----eEEeeecccceecccccccCcccCCCCCccccchh-hhccccccCCCCCCcEE
Q 047837 243 VKNGFALSASSKLIACACS-NG-----AVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAK-ATELYFKLTPTIPNAIA 315 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~-dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 315 (882)
.+..++|+|||++|++++. |+ .|++||+.+++....+...... ..+. .+.... ..+.... ......+..
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~v~~ 113 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-PGTE--TLSDEEKARRERQR-IAAMTGIVD 113 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC------------------------CCEESCC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-cccc--cccchhhhhhhhhh-hccccCcce
Confidence 3478999999999999998 88 9999999988765443211100 0000 000000 0000000 000123567
Q ss_pred EeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcE
Q 047837 316 CQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTI 395 (882)
Q Consensus 316 ~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i 395 (882)
++|+|||+.|+...++.|++||+.++... ....+. .|...+.+++|+ |||++|+.++ ++.|
T Consensus 114 ~~~SpDg~~l~~~~~~~i~~~d~~~~~~~-~~~~l~----------------~~~~~~~~~~~S-PDG~~la~~~-~~~i 174 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLGGELYLYDLKQEGKA-AVRQLT----------------HGEGFATDAKLS-PKGGFVSFIR-GRNL 174 (741)
T ss_dssp CEECTTSSEEEEEETTEEEEEESSSCSTT-SCCBCC----------------CSSSCEEEEEEC-TTSSEEEEEE-TTEE
T ss_pred eEECCCCCEEEEEeCCcEEEEECCCCCcc-eEEEcc----------------cCCcccccccCC-CCCCEEEEEe-CCcE
Confidence 89999999777666799999999876200 011122 245567788888 8999999887 4699
Q ss_pred EEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce---------
Q 047837 396 RLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE--------- 466 (882)
Q Consensus 396 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--------- 466 (882)
.+||+.+++.......+...+ ..+.. . ............++++|||+.+.+...+..
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~~-----------~~g~~-~--~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTTI-----------GNGIA-E--FVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp EEEETTTTEEEECCCCCCSSE-----------EESCC-C--HHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCEEEeccCCccce-----------ecccc-c--eeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 999998876543211111000 00000 0 000000111345666777665544322210
Q ss_pred -------EEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC-CceeEEEee--cCCCCEEEEEEccCCCEEE
Q 047837 467 -------ILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR-NFDLIESID--DHSAAVTAVKFTCNGRKIL 536 (882)
Q Consensus 467 -------v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~--~h~~~v~~~~~s~~~~~l~ 536 (882)
+..+.|...+. ......|++||+.+ + +...... .|...+..++| |||++|+
T Consensus 241 ~~p~~~~~~~~~~~~~g~-----------------~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~ 301 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGD-----------------ANVQVKLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLS 301 (741)
T ss_dssp ECSSCEEEEEEECCBTTS-----------------CCCEEEEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred CCCCcccceEeecCCCCC-----------------CCCeeEEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence 11111111110 00011688889877 6 3333332 47788999999 9999999
Q ss_pred EEeC-----CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc-CCceEEEEEecc
Q 047837 537 SCSA-----DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA-AGKLIRSFKQAK 610 (882)
Q Consensus 537 s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~ 610 (882)
+++. +..|++||+.++...... ..+. ......+..++|+|||+++++++.|+.+++|.+. +++ ...+. .
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~-~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~--~ 376 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASNQQRVLA-HETS-PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT--H 376 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTCCEEEEE-EEEC-SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC--C
T ss_pred EEEecccCCeEEEEEEECCCCceEEEE-EcCC-CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee--e
Confidence 7654 567999999876543322 2111 0000134688999999999999999988888765 355 66665 6
Q ss_pred CCCCcEEE-EECCCCCEEE-EEeCCC--cEEEEEccC-CeEEEEEccCCCCeEEEEECCCCCEEEEEeCC----CeEEEE
Q 047837 611 DFGDPMKV-TVDPSGSYLV-CSYSNK--SICLYDFIS-GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD----GLQRVK 681 (882)
Q Consensus 611 ~~~~v~~~-~~spdg~~l~-~~~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d----g~i~vw 681 (882)
+...+..+ .|+|||++|+ +++.++ .++||++.. ++.+..+.. ...+..++|+|||++|+....+ ..+.+|
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 67778887 5999999775 455555 899999874 665666665 6778899999999998876543 468889
Q ss_pred eCCCC
Q 047837 682 EKYGI 686 (882)
Q Consensus 682 d~~~~ 686 (882)
+..+.
T Consensus 456 ~~~~~ 460 (741)
T 2ecf_A 456 RANGE 460 (741)
T ss_dssp ETTSC
T ss_pred EcCCC
Confidence 87543
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=5.6e-22 Score=232.83 Aligned_cols=369 Identities=11% Similarity=0.105 Sum_probs=226.6
Q ss_pred eEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee-EEeeccc-----------------cceeEEEECCCCCEEEEEc-
Q 047837 47 LCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI-SELKGHL-----------------YGVECIAFSPDGEHLVTVG- 107 (882)
Q Consensus 47 I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~-~~l~~h~-----------------~~V~~lafspdg~~Las~~- 107 (882)
+..+.|+ |..+++++. ++ | +||+.+++.+ ..+..|. ..|.+++|||| ++|+.+.
T Consensus 28 ~~~~~w~--g~~~~~~~~--~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEG--DD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ 100 (706)
T ss_dssp CTTCEEE--TTEEEEEET--TE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET
T ss_pred CCCCcCc--CCeEEEEeC--Cc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC
Confidence 4556777 445555543 55 8 9999999884 4444443 46999999999 5555555
Q ss_pred CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEccc-----CccceeccccCccceeecCccc
Q 047837 108 GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGS-----SATARTRLNKGTESLTLHAKPV 182 (882)
Q Consensus 108 ~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~v 182 (882)
+.|++||+.+++...... +. ..+..++|+|||+.|+++.++.|++|++.+ ++. .+.......-...+.++
T Consensus 101 ~~i~~~d~~~~~~~~l~~-~~--~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~--~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFD-TN--EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRA--IAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TEEEEEETTTTEEEEEEC-CT--TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCC--EESCSCCBTTEEESSCC
T ss_pred CEEEEEECCCCceEEccC-Cc--ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCc--EEeccCCCCCeEcccch
Confidence 999999999987765443 33 678899999999999998889999999987 554 11111000000000000
Q ss_pred cccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecC
Q 047837 183 NLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSN 262 (882)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d 262 (882)
..-....+.+++|+|||++|++++.|
T Consensus 176 ------------------------------------------------------~~ee~~~~~~~~~SpDg~~la~~~~d 201 (706)
T 2z3z_A 176 ------------------------------------------------------HQREFGIEKGTFWSPKGSCLAFYRMD 201 (706)
T ss_dssp ------------------------------------------------------GGGCTTCCCSEEECTTSSEEEEEEEE
T ss_pred ------------------------------------------------------hhhhcCCCceEEECCCCCEEEEEEEC
Confidence 00001122689999999999988743
Q ss_pred -CeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccc
Q 047837 263 -GAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDV 341 (882)
Q Consensus 263 -g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~ 341 (882)
..+..+.+...... ........|...+. ...+..|++||+.++
T Consensus 202 ~~~~~~~~~~~~~~~---------------------------------~~~~~~~~y~~~g~---~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 202 QSMVKPTPIVDYHPL---------------------------------EAESKPLYYPMAGT---PSHHVTVGIYHLATG 245 (706)
T ss_dssp CTTSCCEEEEECCSS---------------------------------SCEEEEECCCBTTS---CCCEEEEEEEETTTT
T ss_pred CCCCceEEeeccCCC---------------------------------CCceEEeeCCCCCC---CCCeeEEEEEECCCC
Confidence 33333332211000 00001112222221 123568999999765
Q ss_pred cccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCC-----cEEEEecCCCceeeecccCCccc
Q 047837 342 NEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADG-----TIRLWDLALQSELSKDVLGHESL 416 (882)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~ 416 (882)
+... ... ...|...+.+++|+ ++++.|++++.++ .|.+||+.+++......
T Consensus 246 ~~~~---~~~--------------~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------ 301 (706)
T 2z3z_A 246 KTVY---LQT--------------GEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------ 301 (706)
T ss_dssp EEEE---CCC--------------CSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------
T ss_pred ceEe---ecc--------------CCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------
Confidence 4211 000 11355667888888 8999999887775 89999998773221100
Q ss_pred eeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc---ceEEEEEEec--CCCCCccceeccCCceE
Q 047837 417 NIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD---AEILSLSFSL--SSKKDDVLEEVTDSHYF 491 (882)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~v~~~~~~~--~~~~~~~~~~~~~~~~~ 491 (882)
...+. ..+..++|+| +++ +
T Consensus 302 -------------------------------------------~~~~~~~~~~~~~~~~sp~~dg~-------------~ 325 (706)
T 2z3z_A 302 -------------------------------------------VETDKHYVEPLHPLTFLPGSNNQ-------------F 325 (706)
T ss_dssp -------------------------------------------EEECSSCCCCCSCCEECTTCSSE-------------E
T ss_pred -------------------------------------------EccCCCeECccCCceeecCCCCE-------------E
Confidence 00011 1123456777 665 8
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEE-EEEccCCCEEEEEeCC-C----eEEEEeCccCccceeeeccceec
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTA-VKFTCNGRKILSCSAD-R----SLVVRDVVETNSAYKISRRHQQL 565 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d-g----~i~vwd~~~~~~~~~~~~~~~~~ 565 (882)
++++..++.++||++......+..+..|...+.. ++|+|+++.|+.++.+ + .|..||+.++. ...+
T Consensus 326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l------- 397 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL------- 397 (706)
T ss_dssp EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-------
T ss_pred EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-------
Confidence 8999999999999887333566777788888877 8999999988765544 3 56666766433 2221
Q ss_pred ccCCceEEEEEecCCCEEEEEeCC----CcEEEEEccCCceEEEE
Q 047837 566 ASQGTVYDMDIDPTMEVVITVGQD----KKINSFSIAAGKLIRSF 606 (882)
Q Consensus 566 ~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~~~~~~ 606 (882)
.+...+.+++|+|||++++....+ +.|++||+.+++ ...+
T Consensus 398 ~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~ 441 (706)
T 2z3z_A 398 TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL 441 (706)
T ss_dssp CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEE
T ss_pred cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeec
Confidence 233578899999999988876544 469999999887 4433
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=4.6e-22 Score=233.61 Aligned_cols=379 Identities=11% Similarity=0.062 Sum_probs=220.5
Q ss_pred eeeEEEecCCCEEEEEecCCeEEeeecccceec-ccccccCcc--cCCCCCccccchhhhccccccCCCCCCcEEEeecC
Q 047837 244 KNGFALSASSKLIACACSNGAVHLFDIQSLKHA-GTLHYSEAK--KCNGENDTVSTAKATELYFKLTPTIPNAIACQFST 320 (882)
Q Consensus 244 ~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 320 (882)
+..+.|. ++.+++++.++ | +||+.+++.+ ..+...... .+...... .......+.+++|+|
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~------------~~~~~~~v~~~~~sp 91 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKF------------QTTDAFPSFRTLDAG 91 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------------------CCCEEEEETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcc------------ccccccCceeEEECC
Confidence 3567788 66777777787 8 9999998763 222100000 00000000 001123577899999
Q ss_pred CCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEec
Q 047837 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDL 400 (882)
Q Consensus 321 ~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~ 400 (882)
| +.++.+.++.|++||+.+++.. .+.. +...+.+++|+ |+|+.|+++ .|+.|.+|++
T Consensus 92 d-~~~~~~~~~~i~~~d~~~~~~~----~l~~----------------~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~ 148 (706)
T 2z3z_A 92 R-GLVVLFTQGGLVGFDMLARKVT----YLFD----------------TNEETASLDFS-PVGDRVAYV-RNHNLYIARG 148 (706)
T ss_dssp T-TEEEEEETTEEEEEETTTTEEE----EEEC----------------CTTCCTTCEEC-TTSSEEEEE-ETTEEEEEEC
T ss_pred C-CeEEEEECCEEEEEECCCCceE----EccC----------------CcccccCCcCC-CCCCEEEEE-ECCeEEEEec
Confidence 9 5444446799999999775321 1222 34457778888 899999885 6799999999
Q ss_pred CC-----CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeecc-ceEEEEEEec
Q 047837 401 AL-----QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHD-AEILSLSFSL 474 (882)
Q Consensus 401 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~v~~~~~~~ 474 (882)
.+ ++.......+... +..|.. ........+..+.++|||+.+.....+ ..+..+....
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~-----------~~~g~~-----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 149 GKLGEGMSRAIAVTIDGTET-----------LVYGQA-----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp BCTTSCCCCCEESCSCCBTT-----------EEESSC-----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred CcccccCCCcEEeccCCCCC-----------eEcccc-----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 87 5543221111100 000000 000001123455566666654433210 0000000000
Q ss_pred CCCCCccc--eeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe--ecCCCCEEEEEEccCCCEEEEEeCCC-----eEE
Q 047837 475 SSKKDDVL--EEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI--DDHSAAVTAVKFTCNGRKILSCSADR-----SLV 545 (882)
Q Consensus 475 ~~~~~~~~--~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~ 545 (882)
........ ...+..+ ....+..|++||+.++ ...... ..|...+..++|+|||++|++++.++ .|+
T Consensus 213 ~~~~~~~~~~~~y~~~g----~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~ 287 (706)
T 2z3z_A 213 YHPLEAESKPLYYPMAG----TPSHHVTVGIYHLATG-KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVN 287 (706)
T ss_dssp CCSSSCEEEEECCCBTT----SCCCEEEEEEEETTTT-EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEE
T ss_pred cCCCCCceEEeeCCCCC----CCCCeeEEEEEECCCC-ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEE
Confidence 00000000 0000000 0113467999999876 333322 24667899999999999999887775 899
Q ss_pred EEeCccCccceeeeccceecccCCceEEEEEec--CCCEEEEEeCCCcEEEEEcc-CCceEEEEEeccCCCCcEE-EEEC
Q 047837 546 VRDVVETNSAYKISRRHQQLASQGTVYDMDIDP--TMEVVITVGQDKKINSFSIA-AGKLIRSFKQAKDFGDPMK-VTVD 621 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~s 621 (882)
+||+.++.....+..... ......+..++|+| ||++++++..|+.+++|++. +++.+..+. .+...+.. ++|+
T Consensus 288 ~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~s 364 (706)
T 2z3z_A 288 AYDAETGRFVRTLFVETD-KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFD 364 (706)
T ss_dssp EEETTTCCEEEEEEEEEC-SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEEC
T ss_pred EEECCCCceeeEEEEccC-CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEc
Confidence 999987633333322111 00111346789999 99999999999999999887 677777776 56667776 7999
Q ss_pred CCCCEEEEEeC-CC----cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeCCCCC
Q 047837 622 PSGSYLVCSYS-NK----SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD----GLQRVKEKYGIL 687 (882)
Q Consensus 622 pdg~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d----g~i~vwd~~~~~ 687 (882)
|||+.|+.++. ++ .|+.||+.+++ +..+. |...+..++|+|||++|+....+ +.|++||+.+..
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 99998865544 44 67777877776 34444 67789999999999998876543 469999998765
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=5.9e-21 Score=201.58 Aligned_cols=279 Identities=10% Similarity=0.104 Sum_probs=191.1
Q ss_pred eecCCC-e-EEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC-CC
Q 047837 317 QFSTSE-K-LVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA-DG 393 (882)
Q Consensus 317 ~~s~~~-~-ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~-dg 393 (882)
.|.+++ . +++...++.|.+||..+++.... +.. +...+ +++|+ ++++++++++. ++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---~~~----------------~~~~~-~~~~s-~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ---ITL----------------GYDFV-DTAIT-SDCSNVVVTSDFCQ 62 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEE---EEC----------------CCCEE-EEEEC-SSSCEEEEEESTTC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeee---EEc----------------cCCcc-eEEEc-CCCCEEEEEeCCCC
Confidence 345544 4 34445589999999987654322 111 12334 67787 78876655554 89
Q ss_pred cEEEEecCCCce-eeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEE
Q 047837 394 TIRLWDLALQSE-LSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSF 472 (882)
Q Consensus 394 ~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~ 472 (882)
.|.+||+.+++. ... +..+.....+++|
T Consensus 63 ~i~~~d~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~~ 91 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVA---------------------------------------------------IQEGQSSMADVDI 91 (331)
T ss_dssp EEEEEECSSSSCEEEE---------------------------------------------------EEECSSCCCCEEE
T ss_pred eEEEEECCCCceeEEe---------------------------------------------------cccCCCCccceEE
Confidence 999999987654 211 1223333333677
Q ss_pred ecCCCCCccceeccCCceEEEEEcCCC---cEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE-eCCCe-EEEE
Q 047837 473 SLSSKKDDVLEEVTDSHYFLASGGRDR---TIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC-SADRS-LVVR 547 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~-i~vw 547 (882)
+|+++ +++++..++ .|.+||+.++ +.+..+.. ......++|+|+|++|+++ ..++. |.+|
T Consensus 92 s~dg~-------------~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 92 TPDDQ-------------FAVTVTGLNHPFNMQSYSFLKN-KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp CTTSS-------------EEEECCCSSSSCEEEEEETTTT-EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred CCCCC-------------EEEEecCCCCcccEEEEECCCC-CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEE
Confidence 77776 677555553 8999999876 56665554 4557999999999866554 55578 9999
Q ss_pred eCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe-CCCcEEEEEccCCce---EEEEEeccCCCCcEEEEECCC
Q 047837 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QDKKINSFSIAAGKL---IRSFKQAKDFGDPMKVTVDPS 623 (882)
Q Consensus 548 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~spd 623 (882)
++.......... ............++|+|+|+++++++ .++.|++||+.+++. +..+. ....+..++|+||
T Consensus 157 ~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spd 231 (331)
T 3u4y_A 157 KIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRD 231 (331)
T ss_dssp EECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTT
T ss_pred EECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---CCCCCceEEECCC
Confidence 998554433222 12223345689999999999665554 688999999999998 77765 3467889999999
Q ss_pred CCEEEEEe-CCCcEEEEEccCCeE--EEEEccC----CC---CeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCC
Q 047837 624 GSYLVCSY-SNKSICLYDFISGEM--VAKAMGH----GE---VITGVTFLPDCKHIVSVG-GDGLQRVKEKYGIL 687 (882)
Q Consensus 624 g~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~h----~~---~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~~~~ 687 (882)
|++|+++. .++.|.+||+.+++. +..+..+ .. ....++|+|||++|++++ .++.|++||+.+..
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99776654 577899999999887 4444322 22 235589999999987665 46699999998754
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=6.1e-21 Score=201.46 Aligned_cols=287 Identities=7% Similarity=0.025 Sum_probs=194.5
Q ss_pred cccCCCCCeEEEee-ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee-eEEe
Q 047837 7 IKKPDSSSKCAYVA-GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF-ISEL 84 (882)
Q Consensus 7 ~~~pd~~~~~~~~~-~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~-~~~l 84 (882)
.|.+++...++... ++.|.+||.++++.+..+..+. ..+ +++|+|||++|+++.. .++.|.+||+.+++. ...+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFV-DTAITSDCSNVVVTSD-FCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEE-EEEECSSSCEEEEEES-TTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcCCCCEEEEEeC-CCCeEEEEECCCCceeEEec
Confidence 45666553333333 5699999999999988876654 567 9999999998877764 367999999999998 7778
Q ss_pred eccccceeEEEECCCCCEEEEEc-C----EEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC-C-Cc-EEEE
Q 047837 85 KGHLYGVECIAFSPDGEHLVTVG-G----YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG-K-KH-LKFW 156 (882)
Q Consensus 85 ~~h~~~V~~lafspdg~~Las~~-~----~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-~-~~-i~iw 156 (882)
..+..+..+++|+|||++|++.. + .|.+||+.+++.+..+..+ ..+.+++|+|||++|++++ . +. |.+|
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC---CCccceEECCCCCEEEEEecCCCceEEEE
Confidence 77777766699999999999555 3 9999999999998887765 5679999999998665553 3 67 9999
Q ss_pred EcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceee
Q 047837 157 TIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVT 236 (882)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~ 236 (882)
++.......... .. .+..
T Consensus 157 ~~~~~g~~~~~~---~~------------------------------------------------------~~~~----- 174 (331)
T 3u4y_A 157 KIDADGVLFDTG---QE------------------------------------------------------FISG----- 174 (331)
T ss_dssp EECTTCCEEEEE---EE------------------------------------------------------EECS-----
T ss_pred EECCCCcEeecC---Cc------------------------------------------------------cccC-----
Confidence 987533200000 00 0000
Q ss_pred eEeeceeeeeEEEecCCCEEEEEe-cCCeEEeeeccccee---cccccccCcccCCCCCccccchhhhccccccCCCCCC
Q 047837 237 KSVDLKVKNGFALSASSKLIACAC-SNGAVHLFDIQSLKH---AGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPN 312 (882)
Q Consensus 237 ~~~~~~~~~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (882)
...+..++|+|+|++|++++ .++.|.+||+.+++. +..+. ....
T Consensus 175 ----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----------------------------~~~~ 222 (331)
T 3u4y_A 175 ----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----------------------------TNNL 222 (331)
T ss_dssp ----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----------------------------CSSC
T ss_pred ----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----------------------------CCCC
Confidence 01126899999999665554 689999999998776 33332 1123
Q ss_pred cEEEeecCCCeEE-EEe-CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe-
Q 047837 313 AIACQFSTSEKLV-VVY-GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC- 389 (882)
Q Consensus 313 ~~~~~~s~~~~ll-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~- 389 (882)
+..++|+|+|+++ ++. .++.|.+||+.+++.... ..+..+ +.. ..........++|+ +++++|+++
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~-~~~~~~------~~~---~~~~~~~~~~~~~s-pdg~~l~v~~ 291 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV-KSFGHG------LLI---DPRPLFGANQMALN-KTETKLFISA 291 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE-EEEECC------CCC---CCGGGTTCCCEEEC-TTSSEEEEEE
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee-cccccc------ccc---CCCCcccccceEEC-CCCCEEEEec
Confidence 3468999999844 443 378899999987643211 111111 000 00011122558898 788877554
Q ss_pred eCCCcEEEEecCCCce
Q 047837 390 SADGTIRLWDLALQSE 405 (882)
Q Consensus 390 ~~dg~i~vwd~~~~~~ 405 (882)
..++.|.+||+.....
T Consensus 292 ~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 292 NISRELKVFTISGKVV 307 (331)
T ss_dssp TTTTEEEEEETTSCEE
T ss_pred CCCCcEEEEEecCCcc
Confidence 4567999999986543
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=1.1e-20 Score=200.50 Aligned_cols=279 Identities=9% Similarity=0.106 Sum_probs=185.8
Q ss_pred eEEEE-eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC-CcEEEEec
Q 047837 323 KLVVV-YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD-GTIRLWDL 400 (882)
Q Consensus 323 ~ll~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d-g~i~vwd~ 400 (882)
.++++ +.++.|++|+++..........+ .|...+.+++|+ +++++|++++.+ +.|.+|++
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-----------------DVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-----------------ECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-----------------ecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEe
Confidence 34444 55999999999642211111111 135567788898 789888888876 99999999
Q ss_pred C--CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCC
Q 047837 401 A--LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKK 478 (882)
Q Consensus 401 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (882)
. ++..... ..+.. ...+..++|+|+++
T Consensus 68 ~~~~~~~~~~-------------------------------------------------~~~~~-~~~~~~~~~s~dg~- 96 (343)
T 1ri6_A 68 APDDGALTFA-------------------------------------------------AESAL-PGSLTHISTDHQGQ- 96 (343)
T ss_dssp CTTTCCEEEE-------------------------------------------------EEEEC-SSCCSEEEECTTSS-
T ss_pred cCCCCceeec-------------------------------------------------ccccc-CCCCcEEEEcCCCC-
Confidence 7 3322100 00111 12456677777776
Q ss_pred CccceeccCCceEEEEE-cCCCcEEEEEcCCC--ceeEEEeecCCCCEEEEEEccCCCEEEEEe-CCCeEEEEeCccCcc
Q 047837 479 DDVLEEVTDSHYFLASG-GRDRTIHLYDVKRN--FDLIESIDDHSAAVTAVKFTCNGRKILSCS-ADRSLVVRDVVETNS 554 (882)
Q Consensus 479 ~~~~~~~~~~~~~l~~g-~~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~ 554 (882)
+++++ ..++.|.+||+..+ ......+.. ...+.+++|+|++++|++++ .++.|.+||+.+...
T Consensus 97 ------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 97 ------------FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp ------------EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred ------------EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 55544 55889999999422 133444443 34688999999999888877 899999999986333
Q ss_pred ceeeeccceecccCCceEEEEEecCCCEEEEEe-CCCcEEEEEccC--Cce--EEEEEec----cCCCCcEEEEECCCCC
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QDKKINSFSIAA--GKL--IRSFKQA----KDFGDPMKVTVDPSGS 625 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~--~~~--~~~~~~~----~~~~~v~~~~~spdg~ 625 (882)
................+..++|+|+++++++++ .++.|.+||+.. ++. ...+... .....+..++|+|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 222110011112234788899999999776555 789999999953 443 2222210 1123566899999999
Q ss_pred EEEEE-eCCCcEEEEEcc--C--CeEEEEEccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q 047837 626 YLVCS-YSNKSICLYDFI--S--GEMVAKAMGHGEVITGVTFLPDCKHIVSVG-GDGLQRVKEKY 684 (882)
Q Consensus 626 ~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~ 684 (882)
+|+++ ..++.|++||+. + .+.+..+..+.. +..++|+|||++|++++ .|+.|.+|++.
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 88754 478999999998 3 355556655544 89999999999998888 68999999654
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=9.6e-22 Score=231.71 Aligned_cols=319 Identities=7% Similarity=0.011 Sum_probs=217.1
Q ss_pred cEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC
Q 047837 313 AIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD 392 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d 392 (882)
..+++|+|||++++.+.|+.|++||+.+++... .+.+|.. +...|.+++|+ |||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~---~~~~~~~-------------~~~~v~~~~~S-pDg~~l~~~~~~ 81 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTV---LIEGKKI-------------ESLRAIRYEIS-PDREYALFSYNV 81 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEE---EECTTTT-------------TTTTCSEEEEC-TTSSEEEEEESC
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEE---Eeccccc-------------cccccceEEEC-CCCCEEEEEecC
Confidence 457899999998877779999999998875422 2322221 11247888998 899999999775
Q ss_pred ---------CcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 393 ---------GTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 393 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
+.+.+||+.+++... ... ...|
T Consensus 82 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~------------------------------------------------~~~~ 112 (723)
T 1xfd_A 82 EPIYQHSYTGYYVLSKIPHGDPQS-LDP------------------------------------------------PEVS 112 (723)
T ss_dssp CCCSSSCCCSEEEEEESSSCCCEE-CCC------------------------------------------------TTCC
T ss_pred ccceeecceeeEEEEECCCCceEe-ccC------------------------------------------------Cccc
Confidence 778899998765411 000 0123
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCE------------------EE
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAV------------------TA 525 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v------------------~~ 525 (882)
...+..++|+|+++ .|+.++. +.|++||+.++ ........+...+ .+
T Consensus 113 ~~~~~~~~~SPdG~-------------~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 113 NAKLQYAGWGPKGQ-------------QLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp SCCCSBCCBCSSTT-------------CEEEEET-TEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred cccccccEECCCCC-------------EEEEEEC-CeEEEEECCCC-ceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 34466677888877 6777765 78999999876 4444444443333 78
Q ss_pred EEEccCCCEEEEEeCCC----------------------------------eEEEEeCccCccceeeeccceecccCCce
Q 047837 526 VKFTCNGRKILSCSADR----------------------------------SLVVRDVVETNSAYKISRRHQQLASQGTV 571 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 571 (882)
++|||||++|++++.|+ .|++||+.++.....+........+...+
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~ 257 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcccee
Confidence 99999999999887543 79999998765433333221112234578
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEEccCCceEEEEEeccCCCCc----EEEEECCCCCEEEE--EeCCC------c
Q 047837 572 YDMDIDPTMEVVITVGQ----DKKINSFSIAAGKLIRSFKQAKDFGDP----MKVTVDPSGSYLVC--SYSNK------S 635 (882)
Q Consensus 572 ~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~~~v----~~~~~spdg~~l~~--~~~dg------~ 635 (882)
..++|+|||+++++... +..|++||+.+++....+.. .+...+ ..++|+|||++|+. +..++ .
T Consensus 258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 99999999998877653 35799999999987776642 233333 37899999997775 44566 5
Q ss_pred EEEEE-ccCCe--EEEEEccCCCCeEE-EEECCCCCEEEEEeCC---CeEEEEeCCCCC--CCcccC----CCCCcccEE
Q 047837 636 ICLYD-FISGE--MVAKAMGHGEVITG-VTFLPDCKHIVSVGGD---GLQRVKEKYGIL--PPRNFA----QPAALSPII 702 (882)
Q Consensus 636 i~iwd-~~~~~--~~~~~~~h~~~v~~-l~~s~d~~~l~s~~~d---g~i~vwd~~~~~--~~~~~~----~~~~~~~~~ 702 (882)
|++|| ..+++ +...+..+...+.. ++|+|||++|+..+.+ +.+++|++.... ....+. +...+..+.
T Consensus 337 l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 416 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSAS 416 (723)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEE
T ss_pred EEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEE
Confidence 77777 34444 14455444445554 6999999999876655 789999986422 233232 344567889
Q ss_pred EecCCCeEEEe
Q 047837 703 FCEEEDQKCRM 713 (882)
Q Consensus 703 ~s~~~~~~~~~ 713 (882)
|++++..++..
T Consensus 417 ~spdg~~l~~~ 427 (723)
T 1xfd_A 417 FSHSMDFFLLK 427 (723)
T ss_dssp ECTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 99998876654
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=7e-20 Score=193.87 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=83.0
Q ss_pred CEEEEeecCCCCeEEEEECCCceeeEEeeccc-c-ceeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCC---
Q 047837 57 RYVAAGESGPQPAVLVWDCANLAFISELKGHL-Y-GVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANS--- 128 (882)
Q Consensus 57 ~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~-~-~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~--- 128 (882)
++|++++. ++.|.+||+.+++.+..+.... . .+..++|+|||++|+.++ +.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPAR--PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEET--TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCC--CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47788855 8899999999999998887432 2 588999999998776554 899999999999888776532
Q ss_pred cccceeEEEEccCCCEEEEEC-------------CCcEEEEEcccCcc
Q 047837 129 SCSAITSACFSSDAKFIVTAG-------------KKHLKFWTIGSSAT 163 (882)
Q Consensus 129 ~~~~v~~l~fs~d~~~l~~~~-------------~~~i~iwd~~~~~~ 163 (882)
+...+..++|+||+++|+++. ++.|.+||+.+++.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 127 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE
Confidence 112678899999999888883 57899999876543
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=4.6e-21 Score=198.75 Aligned_cols=255 Identities=11% Similarity=0.054 Sum_probs=184.6
Q ss_pred eCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCC-Ccee
Q 047837 328 YGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLAL-QSEL 406 (882)
Q Consensus 328 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~ 406 (882)
+.++.|++||+.+++.. .+.. |...|.+++|+ +++++|++++ ++.|.+||+.+ ++..
T Consensus 19 ~~~~~i~~~d~~~~~~~----~~~~----------------~~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~ 76 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR----VVWQ----------------TPELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPE 76 (297)
T ss_dssp CCCEEEEEEETTTTEEE----EEEE----------------ESSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCE
T ss_pred CcceeEEEEeCCCCcee----eecc----------------CCcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCce
Confidence 34899999999875432 2222 45667788888 8999999886 78999999987 5432
Q ss_pred eecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec-cceEEEEEEecCCCCCccceec
Q 047837 407 SKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH-DAEILSLSFSLSSKKDDVLEEV 485 (882)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~ 485 (882)
.. ...+ ...+.+++|+|+++
T Consensus 77 ~~---------------------------------------------------~~~~~~~~~~~~~~spdg~-------- 97 (297)
T 2ojh_A 77 KV---------------------------------------------------DTGFATICNNDHGISPDGA-------- 97 (297)
T ss_dssp EC---------------------------------------------------CCTTCCCBCSCCEECTTSS--------
T ss_pred Ee---------------------------------------------------ccccccccccceEECCCCC--------
Confidence 21 1112 34566677888777
Q ss_pred cCCceEEEEEc--CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEE-EEeCCCeEEEEeCccCccceeeeccc
Q 047837 486 TDSHYFLASGG--RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKIL-SCSADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 486 ~~~~~~l~~g~--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
++++++ .++...||.+.........+..+ ..+..++|+|++++|+ ++..++.+.+|++..........
T Consensus 98 -----~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--- 168 (297)
T 2ojh_A 98 -----LYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--- 168 (297)
T ss_dssp -----EEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC---
T ss_pred -----EEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc---
Confidence 787777 33455555554321234444434 3489999999999887 77789999999975332222221
Q ss_pred eecccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcc-CCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC-------
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVG-QDKKINSFSIA-AGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN------- 633 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d------- 633 (882)
..+...+.+++|+|++++|+.++ .++.+++|++. .+..+..+. .+...+..++|+|+|++|++++.+
T Consensus 169 --~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 169 --THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp --CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred --ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 22346889999999999888766 58999999987 556666665 566788999999999999988765
Q ss_pred ----CcEEEEEccCCeE--EEEEccCCCCeEEEEECCCCCEEEEEeCCC
Q 047837 634 ----KSICLYDFISGEM--VAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 634 ----g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg 676 (882)
+.|++||+.+++. +..+.+|...+..++|+||+++|++++.|.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865 445557888999999999999999887654
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.8e-19 Score=190.60 Aligned_cols=280 Identities=11% Similarity=0.111 Sum_probs=199.5
Q ss_pred cEEEeecCCCeEE-EEeC-------CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc
Q 047837 313 AIACQFSTSEKLV-VVYG-------DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV 384 (882)
Q Consensus 313 ~~~~~~s~~~~ll-~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~ 384 (882)
+..++|+|+++.+ ++.. ++.|.+||..+++..... . ....+..++|+ ++++
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---~-----------------~~~~~~~~~~s-~dg~ 101 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI---H-----------------NDLKPFGATIN-NTTQ 101 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE---E-----------------ESSCCCSEEEE-TTTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE---e-----------------cCCCcceEEEC-CCCC
Confidence 4578999998644 4432 678999999876543221 1 12235677888 6777
Q ss_pred -EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 385 -SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 385 -~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
++++...++.|.+||..+++.+.....+.... + ....
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------------------------~------~~~~ 139 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR------------------------------------T------EEVR 139 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEESCCCCC------------------------------------C------SSCC
T ss_pred EEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc------------------------------------c------cccC
Confidence 45556668999999999877654322110000 0 0000
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEc--CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG--RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD 541 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 541 (882)
...+..++|+|+++ ++++++ .++.|.+||..++ +....+..+...+..++|+|++++|++++.+
T Consensus 140 ~~~~~~~~~s~dg~-------------~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 205 (353)
T 3vgz_A 140 PLQPRELVADDATN-------------TVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDSEGKRLYTTNAD 205 (353)
T ss_dssp CCEEEEEEEETTTT-------------EEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEETTTTEEEEECTT
T ss_pred CCCCceEEECCCCC-------------EEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECCCCCEEEEEcCC
Confidence 11245677777766 455544 5789999999876 6666776566678899999999999999999
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CCcEEEEEccCCceEEEEEeccCCCCcEEEEE
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTV 620 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 620 (882)
+.|.+||+.+++....+.... ..+...+..++|+|+++++++++. ++.|.+||+.+++.+..+.. . ....++|
T Consensus 206 ~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~--~~~~~~~ 279 (353)
T 3vgz_A 206 GELITIDTADNKILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--P--ESLAVLF 279 (353)
T ss_dssp SEEEEEETTTTEEEEEEECCC--SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--S--SCCCEEE
T ss_pred CeEEEEECCCCeEEEEEEcCC--CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--C--CCceEEE
Confidence 999999998766544433211 122346788999999998777665 48999999999999888872 2 2357999
Q ss_pred CCCCCEEEEEe-CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCC
Q 047837 621 DPSGSYLVCSY-SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 621 spdg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg 676 (882)
+|+|++++++. .++.|.+||..+++.+..+.. ...+.+++|+|||++|+.+..++
T Consensus 280 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 280 NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence 99999766555 689999999999999888874 45789999999999887776554
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.9e-19 Score=191.00 Aligned_cols=271 Identities=15% Similarity=0.143 Sum_probs=172.7
Q ss_pred CcEEEeecCCCe-EEEEeCC-ceEEEEEcc--cccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 312 NAIACQFSTSEK-LVVVYGD-HSLYVWDIH--DVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 312 ~~~~~~~s~~~~-ll~~~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
.+..++|+|+++ +++++.+ +.|.+|+++ ++.. .....+.. ...+..++|+ +++++|+
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~s-~dg~~l~ 99 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESAL-----------------PGSLTHISTD-HQGQFVF 99 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEEC-----------------SSCCSEEEEC-TTSSEEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eecccccc-----------------CCCCcEEEEc-CCCCEEE
Confidence 345689999998 5555654 999999997 3221 11111111 1256788888 7888776
Q ss_pred Eee-CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 388 TCS-ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 388 t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
+++ .++.|.+||+..+..... +. .+ .....
T Consensus 100 ~~~~~~~~i~~~d~~~~~~~~~----------------------------------------~~--------~~-~~~~~ 130 (343)
T 1ri6_A 100 VGSYNAGNVSVTRLEDGLPVGV----------------------------------------VD--------VV-EGLDG 130 (343)
T ss_dssp EEETTTTEEEEEEEETTEEEEE----------------------------------------EE--------EE-CCCTT
T ss_pred EEecCCCeEEEEECCCCccccc----------------------------------------cc--------cc-cCCCC
Confidence 655 488999999953221100 00 00 11223
Q ss_pred EEEEEEecCCCCCccceeccCCceEEEEEc-CCCcEEEEEcCCCceeEE----Eeec-CCCCEEEEEEccCCCEEEEEe-
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFLASGG-RDRTIHLYDVKRNFDLIE----SIDD-HSAAVTAVKFTCNGRKILSCS- 539 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~v~iwd~~~~~~~~~----~~~~-h~~~v~~~~~s~~~~~l~s~~- 539 (882)
+.+++|+|+++ ++++++ .++.|.+||+.+...... .... ....+..++|+|++++|++++
T Consensus 131 ~~~~~~s~dg~-------------~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 131 CHSANISPDNR-------------TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp BCCCEECTTSS-------------EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCCC-------------EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence 55667777776 566665 889999999987223321 2222 345788999999999776554
Q ss_pred CCCeEEEEeCccCccceeeeccce----ecccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcc--CC--ceEEEEEecc
Q 047837 540 ADRSLVVRDVVETNSAYKISRRHQ----QLASQGTVYDMDIDPTMEVVITV-GQDKKINSFSIA--AG--KLIRSFKQAK 610 (882)
Q Consensus 540 ~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~--~~--~~~~~~~~~~ 610 (882)
.++.|.+|++.............. .......+..++|+|++++|+++ ..++.|.+||+. ++ +.+..+. .
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~ 275 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--T 275 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--C
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--C
Confidence 789999999964221111111111 01112356789999999987754 478999999998 33 3444444 3
Q ss_pred CCCCcEEEEECCCCCEEEEEe-CCCcEEEEEc--cCCe--EEEEEccCCCCeEEEEECCCCC
Q 047837 611 DFGDPMKVTVDPSGSYLVCSY-SNKSICLYDF--ISGE--MVAKAMGHGEVITGVTFLPDCK 667 (882)
Q Consensus 611 ~~~~v~~~~~spdg~~l~~~~-~dg~i~iwd~--~~~~--~~~~~~~h~~~v~~l~~s~d~~ 667 (882)
+. .+..++|+|+|++|++++ .++.|.+|++ .+++ .+..+.. .....+++|.++.+
T Consensus 276 ~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 276 ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred CC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 33 388999999999988887 6899999955 4664 3444543 24567788877654
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.4e-20 Score=193.36 Aligned_cols=232 Identities=9% Similarity=0.019 Sum_probs=173.2
Q ss_pred eeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCC-CceeEEEeecC-CCCEEEEEEccCCCEEEEE
Q 047837 461 DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKR-NFDLIESIDDH-SAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~ 538 (882)
..|...|.+++|+|+++ +|++++ ++.|++||+.+ + +.......+ ...+.+++|+|++++|+++
T Consensus 38 ~~~~~~v~~~~~spdg~-------------~l~~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 102 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGK-------------YLLLNS-EGLLYRLSLAGDP-SPEKVDTGFATICNNDHGISPDGALYAIS 102 (297)
T ss_dssp EEESSCCEEEEECTTSS-------------EEEEEE-TTEEEEEESSSCC-SCEECCCTTCCCBCSCCEECTTSSEEEEE
T ss_pred ccCCcceEeeEECCCCC-------------EEEEEc-CCeEEEEeCCCCC-CceEeccccccccccceEECCCCCEEEEE
Confidence 35677888999999988 788876 78999999987 5 455555555 4678999999999999999
Q ss_pred e--CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEE-EEeCCCcEEEEEccC-CceEEEEEeccCCCC
Q 047837 539 S--ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVI-TVGQDKKINSFSIAA-GKLIRSFKQAKDFGD 614 (882)
Q Consensus 539 ~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~ 614 (882)
+ .++...+|.+........... ....+..++|+|++++|+ ++..++.+++|++.. +.....+. .+...
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~ 174 (297)
T 2ojh_A 103 DKVEFGKSAIYLLPSTGGTPRLMT------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT--HGEGR 174 (297)
T ss_dssp ECTTTSSCEEEEEETTCCCCEECC------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC--CSSSC
T ss_pred EeCCCCcceEEEEECCCCceEEee------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc--cCCCc
Confidence 8 344556665542222222211 123588899999999887 777899999998642 23334444 67788
Q ss_pred cEEEEECCCCCEEEEEe-CCCcEEEEEcc-CCeEEEEEccCCCCeEEEEECCCCCEEEEEeCC-----------CeEEEE
Q 047837 615 PMKVTVDPSGSYLVCSY-SNKSICLYDFI-SGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGD-----------GLQRVK 681 (882)
Q Consensus 615 v~~~~~spdg~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d-----------g~i~vw 681 (882)
+..++|+|+|++|+.++ .++.++||++. .+..+..+..|...+..++|+|||++|++++.+ +.|++|
T Consensus 175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 99999999999888766 58999999987 566677788888899999999999999988866 569999
Q ss_pred eCCCCCCCccc---CCCCCcccEEEecCCCeEEEecc
Q 047837 682 EKYGILPPRNF---AQPAALSPIIFCEEEDQKCRMDS 715 (882)
Q Consensus 682 d~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~ 715 (882)
|+.+....... .+...+..+.|+|++..++....
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 255 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp ETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred ecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 99887653322 34556777888888877665543
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.4e-20 Score=197.47 Aligned_cols=277 Identities=12% Similarity=0.088 Sum_probs=194.8
Q ss_pred eEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCC-CcceeeeccCCCcE-EEEeeCCCcEEEEec
Q 047837 323 KLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDP-SVSCVARGCTGGVS-FSTCSADGTIRLWDL 400 (882)
Q Consensus 323 ~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~-~v~~~~~~~~~~~~-l~t~~~dg~i~vwd~ 400 (882)
.+++++.++.|++||+.+++.... +.. .+.. .+..++|+ ++++. ++++..++.|.+||+
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~---~~~---------------~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~ 63 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV---ITI---------------ADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDL 63 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE---EEC---------------TTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEET
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE---EEc---------------CCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEEC
Confidence 356677899999999987643221 110 0111 36778888 77765 466667899999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
.+++.+.....+. .+ .|...+..++|+|+++
T Consensus 64 ~~~~~~~~~~~~~----------------------------------------~~------~~~~~~~~~~~s~dg~--- 94 (337)
T 1pby_B 64 VTGETLGRIDLST----------------------------------------PE------ERVKSLFGAALSPDGK--- 94 (337)
T ss_dssp TTCCEEEEEECCB----------------------------------------TT------EEEECTTCEEECTTSS---
T ss_pred CCCCeEeeEEcCC----------------------------------------cc------cccccccceEECCCCC---
Confidence 8876543321100 00 0111233456666665
Q ss_pred cceeccCCceEEEEEc------------CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 481 VLEEVTDSHYFLASGG------------RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~------------~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
+++++. .++.|.+||+.++ +....+.. ...+..++|+|++++|+++ ++.|.+||
T Consensus 95 ----------~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 95 ----------TLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp ----------EEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEE
T ss_pred ----------EEEEEecccccccccccccCceEEEEECCCC-cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEE
Confidence 566664 5789999999876 55555553 4567889999999988887 67899999
Q ss_pred CccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC------------------------cEEEEEccCCceEE
Q 047837 549 VVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK------------------------KINSFSIAAGKLIR 604 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------------------~v~iwd~~~~~~~~ 604 (882)
+.+++....+.... ....+.|+|+++.++..+.++ .|.+||+.+++..
T Consensus 161 ~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~- 232 (337)
T 1pby_B 161 PEAGTLVEDKPIQS-------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA- 232 (337)
T ss_dssp TTTTEEEEEECSTT-------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred CCCCcEeeeeeccc-------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence 98765443332111 011237899988765544332 4689999998876
Q ss_pred EEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 605 SFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 605 ~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.+....+...+..++|+|||++|+++ ++.|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 44434566788899999999999988 78999999999998888764 3567899999999999999999999999998
Q ss_pred CCCCCccc
Q 047837 685 GILPPRNF 692 (882)
Q Consensus 685 ~~~~~~~~ 692 (882)
+......+
T Consensus 310 ~~~~~~~~ 317 (337)
T 1pby_B 310 TLEKKGQV 317 (337)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 87655544
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.4e-19 Score=191.13 Aligned_cols=270 Identities=10% Similarity=0.067 Sum_probs=201.8
Q ss_pred CCcceeeeccCCCcEEEEeeC-------CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccc
Q 047837 371 PSVSCVARGCTGGVSFSTCSA-------DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVST 443 (882)
Q Consensus 371 ~~v~~~~~~~~~~~~l~t~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (882)
..+..++++ ++++.+++++. ++.|.+||..+++......
T Consensus 41 ~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------- 86 (353)
T 3vgz_A 41 KGAYEMAYS-QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------------------- 86 (353)
T ss_dssp SSEEEEEEE-TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------------------
T ss_pred cCccceEEC-CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------------------
Confidence 345677888 78877777764 5689999998876543311
Q ss_pred cCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCC--
Q 047837 444 QGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSA-- 521 (882)
Q Consensus 444 ~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~-- 521 (882)
....+..++|+++++ .++++...++.|.+||..++ +.+..+..+..
T Consensus 87 -------------------~~~~~~~~~~s~dg~------------~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~ 134 (353)
T 3vgz_A 87 -------------------NDLKPFGATINNTTQ------------TLWFGNTVNSAVTAIDAKTG-EVKGRLVLDDRKR 134 (353)
T ss_dssp -------------------ESSCCCSEEEETTTT------------EEEEEETTTTEEEEEETTTC-CEEEEEESCCCCC
T ss_pred -------------------cCCCcceEEECCCCC------------EEEEEecCCCEEEEEeCCCC-eeEEEEecCCCcc
Confidence 011234456666655 14556667899999999887 55555554432
Q ss_pred -------CEEEEEEccCCCEEEEEe--CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcE
Q 047837 522 -------AVTAVKFTCNGRKILSCS--ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKI 592 (882)
Q Consensus 522 -------~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v 592 (882)
.+.+++|+|+++++++++ .++.|.+||..+.+....+.. +...+.+++|+|+++++++++.++.|
T Consensus 135 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~i 208 (353)
T 3vgz_A 135 TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN------TGKMSTGLALDSEGKRLYTTNADGEL 208 (353)
T ss_dssp CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC------CCTTCCCCEEETTTTEEEEECTTSEE
T ss_pred ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC------CCCccceEEECCCCCEEEEEcCCCeE
Confidence 278999999999888776 478899999987655443321 12357889999999999999999999
Q ss_pred EEEEccCCceEEEEEec--cCCCCcEEEEECCCCCEEEEEeC-CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEE
Q 047837 593 NSFSIAAGKLIRSFKQA--KDFGDPMKVTVDPSGSYLVCSYS-NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHI 669 (882)
Q Consensus 593 ~iwd~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 669 (882)
.+||+.+++.+..+... ++...+..++|+|+|++|++++. ++.|.+||..+++.+..+.... ...++|+|||++|
T Consensus 209 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l 286 (353)
T 3vgz_A 209 ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEA 286 (353)
T ss_dssp EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEE
T ss_pred EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEE
Confidence 99999999988887631 24556788999999998776655 5899999999999888876543 3679999999976
Q ss_pred EEEe-CCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEEec
Q 047837 670 VSVG-GDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCRMD 714 (882)
Q Consensus 670 ~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 714 (882)
+.+. .++.|.+||+.+......+........+.|++++..+....
T Consensus 287 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEE
Confidence 6555 79999999999888777776666677889999888655444
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=7.3e-20 Score=215.20 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=111.8
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCC-CCCeEEEEEcCCCCEEEEeec-------CCCCeEEEEEC
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRM-PKPLCCVAMSRDGRYVAAGES-------GPQPAVLVWDC 75 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~-~~~I~~va~spdg~~la~g~~-------~~d~~I~vwd~ 75 (882)
-.+.|+|||. .++...++.|.+||+.+++....+.+|.. +..|.+++|||||++||+++. ..++.|++||+
T Consensus 19 ~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 3578999983 44444567999999999998877766641 014899999999999999864 12579999999
Q ss_pred CCceee--EEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccce-----------------eE
Q 047837 76 ANLAFI--SELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAI-----------------TS 135 (882)
Q Consensus 76 ~t~~~~--~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v-----------------~~ 135 (882)
.+++.+ ..+ ...+..++|||||++||++. +.|++||+.+++........ +...| .+
T Consensus 98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNG-RENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTTEECCSSCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCCccccceec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCC-CcCCeEcccccceeeeecccCccc
Confidence 999874 223 35689999999999999999 99999999998875433211 11222 48
Q ss_pred EEEccCCCEEEEECC--CcEEEEEc
Q 047837 136 ACFSSDAKFIVTAGK--KHLKFWTI 158 (882)
Q Consensus 136 l~fs~d~~~l~~~~~--~~i~iwd~ 158 (882)
++|+|||++|++++. +.+.+|.+
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEE
T ss_pred EEECCCCCEEEEEEECCCCCceEEe
Confidence 999999999998763 33444443
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=8.8e-20 Score=214.51 Aligned_cols=390 Identities=9% Similarity=0.028 Sum_probs=231.7
Q ss_pred EEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecccc---ceeEEEECCCCCEEEEEc-----------CEEEEEE
Q 047837 49 CVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLY---GVECIAFSPDGEHLVTVG-----------GYIYLWN 114 (882)
Q Consensus 49 ~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~---~V~~lafspdg~~Las~~-----------~~i~iWd 114 (882)
.++|+|||++++++ .|+.|++||+.+++....+.+|.. .|.+++|||||++||+++ +.|++||
T Consensus 20 ~~~~s~dg~~~~~~---~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQS---ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEEC---TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEc---CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 67999999877765 278999999999998887776655 499999999999998764 5899999
Q ss_pred cCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEE
Q 047837 115 WRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVS 194 (882)
Q Consensus 115 ~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 194 (882)
+.+++.+...... ..+..++|||||+.|+.+.++.|++|++.++... ++... ++...+..+
T Consensus 97 ~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~--~l~~~-----~~~~~v~~g--------- 157 (719)
T 1z68_A 97 LSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF--QITFN-----GRENKIFNG--------- 157 (719)
T ss_dssp TTTTEECCSSCCC---SSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE--ECCCC-----CBTTTEEES---------
T ss_pred CCCCccccceecC---cccccceECCCCCEEEEEECCeEEEEeCCCCCcE--EEecC-----CCcCCeEcc---------
Confidence 9999874211211 5688999999999999998899999999877652 11100 000000000
Q ss_pred eeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecC-CeEEeeecccc
Q 047837 195 VISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSN-GAVHLFDIQSL 273 (882)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d-g~I~vwd~~~~ 273 (882)
...|.... + ......+++|+|||++|++++.| +.+.+|.+...
T Consensus 158 --~~~~v~~e-----------------------------e-----~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~ 201 (719)
T 1z68_A 158 --IPDWVYEE-----------------------------E-----MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYY 201 (719)
T ss_dssp --SCCHHHHH-----------------------------H-----TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEEC
T ss_pred --cccceeee-----------------------------e-----cccCcccEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 00000000 0 00011478999999999998765 55556644321
Q ss_pred eecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecC
Q 047837 274 KHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSH 353 (882)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 353 (882)
.. .+..... .+.|...|. ......|++||+.+++...... +
T Consensus 202 ~~-------------~~~~~~~-------------------~~~yp~~g~---~~~~~~l~~~d~~~~~~~~~~~-~--- 242 (719)
T 1z68_A 202 GD-------------EQYPRTI-------------------NIPYPKAGA---KNPVVRIFIIDTTYPAYVGPQE-V--- 242 (719)
T ss_dssp CS-------------SSSCEEE-------------------EEECCBTTS---CCCEEEEEEEESSCHHHHCCEE-C---
T ss_pred CC-------------CCCccce-------------------eecCCCCCC---CCCeeEEEEEECCCCCccceeE-c---
Confidence 10 0000000 123332322 0124579999998764310000 0
Q ss_pred cceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC----CcEEEEe----cCCCceeeecccCCccceeeecCCcc
Q 047837 354 SACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD----GTIRLWD----LALQSELSKDVLGHESLNIEPMSTAH 425 (882)
Q Consensus 354 ~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (882)
.....+..|...+..++|+ +|++++++.... ..|.+|| +.+++......
T Consensus 243 -------~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~--------------- 299 (719)
T 1z68_A 243 -------PVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE--------------- 299 (719)
T ss_dssp -------CCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE---------------
T ss_pred -------cCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe---------------
Confidence 0000012356667788888 678777774432 2488888 66554321100
Q ss_pred eEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE-----EEEEecCCCCCccceeccCCceEEE--EEcCC
Q 047837 426 LVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL-----SLSFSLSSKKDDVLEEVTDSHYFLA--SGGRD 498 (882)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~d 498 (882)
.....|.+.+. .+.|+|+++ .++ +...+
T Consensus 300 --------------------------------~~~~~~~~~~~~~~~~~~~~spdg~-------------~l~~~~~~~~ 334 (719)
T 1z68_A 300 --------------------------------HIEESRTGWAGGFFVSTPVFSYDAI-------------SYYKIFSDKD 334 (719)
T ss_dssp --------------------------------EEEECSSSCSSSSSCCCCEECTTSS-------------CEEEEEECTT
T ss_pred --------------------------------cccccCCceEccccCCccEECCCCC-------------eEEEEEEccC
Confidence 00012222222 445666655 332 34455
Q ss_pred C--cEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEeCccCcc--ceeeeccceecccCC
Q 047837 499 R--TIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD-----RSLVVRDVVETNS--AYKISRRHQQLASQG 569 (882)
Q Consensus 499 g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 569 (882)
| .|.+||+.++ . ...+..+...+..+.++ +++.|+..+.+ +...+|.+..... ..+.... ....+..
T Consensus 335 g~~~l~~~~~~~~-~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~-~~~~~~~ 410 (719)
T 1z68_A 335 GYKHIHYIKDTVE-N-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC-HLRKERC 410 (719)
T ss_dssp SCEEEEEESSCST-T-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST-TTTTTTB
T ss_pred CceEEEEEECCCC-c-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC-ccCCCCC
Confidence 5 4666676554 2 45566667778888888 88888776654 7889998764211 1111110 0011334
Q ss_pred ceEEEEEecCCCEEEEE-eCC--CcEEEEEccCCceEEEEE
Q 047837 570 TVYDMDIDPTMEVVITV-GQD--KKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 570 ~v~~~~~sp~~~~l~~~-~~d--~~v~iwd~~~~~~~~~~~ 607 (882)
.+..+.|+|++++++.. +.+ ..+.+||+.+++.+..+.
T Consensus 411 ~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 411 QYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 67889999999877654 333 468999999888776665
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=4.1e-18 Score=180.99 Aligned_cols=249 Identities=10% Similarity=0.156 Sum_probs=169.3
Q ss_pred CCCcceeeeccCCCcEEEEeeC---CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCe
Q 047837 370 DPSVSCVARGCTGGVSFSTCSA---DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGY 446 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (882)
...+..++|+ ++++ |++++. ++.|.+|++.++.....
T Consensus 39 ~~~p~~~a~s-pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-------------------------------------- 78 (347)
T 3hfq_A 39 TQNPTYLALS-AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-------------------------------------- 78 (347)
T ss_dssp CSCCCCEEEC-TTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------------------------------
T ss_pred cCCcceEEEc-cCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------------------------------
Confidence 3556778888 7888 554443 68999999976542110
Q ss_pred EEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEc-CCCcEEEEEcCCCc--eeEEEeec-----
Q 047837 447 RSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG-RDRTIHLYDVKRNF--DLIESIDD----- 518 (882)
Q Consensus 447 ~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~v~iwd~~~~~--~~~~~~~~----- 518 (882)
.....+...+..++|+|+++ +|++++ .++.|.+|++.... ..+..+..
T Consensus 79 -----------~~~~~~~~~p~~~a~spdg~-------------~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 79 -----------NTVVAPGTPPAYVAVDEARQ-------------LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGP 134 (347)
T ss_dssp -----------EEEEEESCCCSEEEEETTTT-------------EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCS
T ss_pred -----------eeeecCCCCCEEEEECCCCC-------------EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCC
Confidence 01123455566778888877 676666 78999999996421 22333321
Q ss_pred ----CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEE-EeCCCcEE
Q 047837 519 ----HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVIT-VGQDKKIN 593 (882)
Q Consensus 519 ----h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~ 593 (882)
+...+.+++|+|+|+.+++...++.|.+|++........... ...........++|+|||+++++ ...++.|.
T Consensus 135 ~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~--~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~ 212 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV--LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIA 212 (347)
T ss_dssp STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE--EECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee--EEcCCCCCCceEEECCCCCEEEEEeCCCCEEE
Confidence 123488999999999666777789999999983332222111 01112236778999999996666 45678999
Q ss_pred EEEccC--CceE--EEEEeccC----CCCcEEEEECCCCCEEE-EEeCCCcEEEEEcc-CC--eEEEEEccCCCCeEEEE
Q 047837 594 SFSIAA--GKLI--RSFKQAKD----FGDPMKVTVDPSGSYLV-CSYSNKSICLYDFI-SG--EMVAKAMGHGEVITGVT 661 (882)
Q Consensus 594 iwd~~~--~~~~--~~~~~~~~----~~~v~~~~~spdg~~l~-~~~~dg~i~iwd~~-~~--~~~~~~~~h~~~v~~l~ 661 (882)
+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+||+. ++ +.+..+..+...+..++
T Consensus 213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 292 (347)
T 3hfq_A 213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD 292 (347)
T ss_dssp EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence 999874 5432 23321111 13588899999999874 55668999999997 23 55666776777889999
Q ss_pred ECCCCCEEEEEeCC-CeEEEEeCC
Q 047837 662 FLPDCKHIVSVGGD-GLQRVKEKY 684 (882)
Q Consensus 662 ~s~d~~~l~s~~~d-g~i~vwd~~ 684 (882)
|+|||++|++++.+ +.|.+|++.
T Consensus 293 ~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 293 LDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99999999888754 899999653
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=9.2e-18 Score=178.25 Aligned_cols=263 Identities=13% Similarity=0.201 Sum_probs=169.5
Q ss_pred cEEEeecCCCeEEEEeC---CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe
Q 047837 313 AIACQFSTSEKLVVVYG---DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC 389 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~ 389 (882)
+..++|+|+|++++++. ++.|++|++.+++.. ....+. .+...+..++|+ +++++|+++
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~-~~~~~~----------------~~~~~p~~~a~s-pdg~~l~~~ 103 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAH-KLNTVV----------------APGTPPAYVAVD-EARQLVYSA 103 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEE-EEEEEE----------------EESCCCSEEEEE-TTTTEEEEE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEE-Eeeeee----------------cCCCCCEEEEEC-CCCCEEEEE
Confidence 34689999999666654 589999999654321 111111 134567778888 889888877
Q ss_pred e-CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 390 S-ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 390 ~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
+ .++.|.+|++......... ..+.....+.. ...+...+.
T Consensus 104 ~~~~~~v~v~~~~~~g~~~~~-------------------------------------~~~~~~~~~p~--~~~~~~~~~ 144 (347)
T 3hfq_A 104 NYHKGTAEVMKIAADGALTLT-------------------------------------DTVQHSGHGPR--PEQDGSHIH 144 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEE-------------------------------------EEEECCCCCSS--TTCSSCCEE
T ss_pred eCCCCEEEEEEeCCCCCeeec-------------------------------------ceeecCCCCCC--ccccCCCce
Confidence 7 6899999999642211110 00000000000 011334577
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeE--EEeec-CCCCEEEEEEccCCCEEEE-EeCCCeE
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLI--ESIDD-HSAAVTAVKFTCNGRKILS-CSADRSL 544 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~--~~~~~-h~~~v~~~~~s~~~~~l~s-~~~dg~i 544 (882)
+++|+|+++ ++++...++.|.+|++....... ..+.. ....+..++|+|||++|++ ...++.|
T Consensus 145 ~~~~spdg~-------------l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 211 (347)
T 3hfq_A 145 YTDLTPDNR-------------LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI 211 (347)
T ss_dssp EEEECTTSC-------------EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEECCCCc-------------EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence 788888877 78888888999999998322222 22222 2346888999999997665 5678899
Q ss_pred EEEeCccCccceeeeccceec----ccCCceEEEEEecCCCEEE-EEeCCCcEEEEEccC-C--ceEEEEEeccCCCCcE
Q 047837 545 VVRDVVETNSAYKISRRHQQL----ASQGTVYDMDIDPTMEVVI-TVGQDKKINSFSIAA-G--KLIRSFKQAKDFGDPM 616 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~-~--~~~~~~~~~~~~~~v~ 616 (882)
.+|++................ .....+..++|+|||++|+ +...++.|.+||+.. + +.+..+. .+...+.
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~ 289 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPR 289 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCC
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcC
Confidence 999987522111111111101 1114588999999999874 555689999999973 3 3444444 4556789
Q ss_pred EEEECCCCCEEEEEeC-CCcEEEE--EccCCeEE
Q 047837 617 KVTVDPSGSYLVCSYS-NKSICLY--DFISGEMV 647 (882)
Q Consensus 617 ~~~~spdg~~l~~~~~-dg~i~iw--d~~~~~~~ 647 (882)
.++|+|||++|++++. ++.|.+| |..+|++.
T Consensus 290 ~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 290 DFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred eEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9999999999888775 4899999 55567654
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=5.8e-19 Score=201.77 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=134.4
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC----CeEEEEeCccCccceeeeccceecc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD----RSLVVRDVVETNSAYKISRRHQQLA 566 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~ 566 (882)
.++++..+ .+.+||+.++ +...... +.. .+++|||||++|++++.+ +.|++||+.+++.. .+ ..
T Consensus 125 ~~~s~~~~-~~~l~d~~~g-~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l------~~ 192 (582)
T 3o4h_A 125 VFTGATED-RVALYALDGG-GLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF------DS 192 (582)
T ss_dssp EEEEECSS-CEEEEEEETT-EEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EE------CC
T ss_pred EEEecCCC-CceEEEccCC-cEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee------ec
Confidence 34555554 4559999876 4443333 333 789999999999988877 78999998865532 22 22
Q ss_pred cCCceEEEEEecCCCEEEEEeCCC--cEEEEEccCCceEEEEEeccCCCCcEEEE--------ECCCCCEEEEEeCCCcE
Q 047837 567 SQGTVYDMDIDPTMEVVITVGQDK--KINSFSIAAGKLIRSFKQAKDFGDPMKVT--------VDPSGSYLVCSYSNKSI 636 (882)
Q Consensus 567 ~~~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~spdg~~l~~~~~dg~i 636 (882)
+.+.+..++|+|||++|+++..++ .|++||+.+++.. .+. .+...+..++ |+|||.++++++.++.+
T Consensus 193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence 346789999999999999888888 8999999998877 554 5666666677 99999999999999999
Q ss_pred EEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCe---EEEEeCCC
Q 047837 637 CLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGL---QRVKEKYG 685 (882)
Q Consensus 637 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~---i~vwd~~~ 685 (882)
+||++ |+.+. .+.+.|.+++|+ |++++++++.+.. +.+||..+
T Consensus 270 ~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 270 AVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999 77654 345778999999 9999999887754 77777654
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=4.7e-18 Score=180.73 Aligned_cols=298 Identities=11% Similarity=0.013 Sum_probs=185.7
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE 83 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~ 83 (882)
.++++.+++...++...++.|.+||+.+++.+..+..+.. ..+..++|+|||++++++. ..++.|.+||+.+++.+..
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~-~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLN-NHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEE-TTTTEEEEEETTTTEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEe-CCCCcEEEEeCCCCcEEEE
Confidence 4678888765333334467999999999998887765431 2688999999999776654 3478999999999999887
Q ss_pred eecc------ccceeEEEECCCCCEEEEEc--------------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCC
Q 047837 84 LKGH------LYGVECIAFSPDGEHLVTVG--------------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAK 143 (882)
Q Consensus 84 l~~h------~~~V~~lafspdg~~Las~~--------------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~ 143 (882)
+..+ ...+..++|+|||++|++++ +.|.+||+.+++....+....+...+.+++|+||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 7643 33488999999999998877 789999999865443322211225688999999999
Q ss_pred EEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccC
Q 047837 144 FIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDA 223 (882)
Q Consensus 144 ~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (882)
+++++ +.|.+||+.+++......... ...+.... .+. ...|... ..
T Consensus 161 -l~~~~-~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~--~~~------~~~~~~~------------------~~ 206 (349)
T 1jmx_B 161 -LYVAG-PDIYKMDVKTGKYTVALPLRN------WNRKGYSA--PDV------LYFWPHQ------------------SP 206 (349)
T ss_dssp -EEEES-SSEEEECTTTCCEEEEECSTT------CCCTTBCC--CBC------CCCCCCC------------------CT
T ss_pred -EEEcc-CcEEEEeCCCCceeccccccc------cCCccccC--ccc------eeeecCC------------------Cc
Confidence 55443 449999998776521110000 00000000 000 0000000 00
Q ss_pred ceEEEEccCceeeeEeeceeeeeEEEecCCCE-----------EEEEecCCeEEeeecccceecccccccCcccCCCCCc
Q 047837 224 GILYIVHSGLSVTKSVDLKVKNGFALSASSKL-----------IACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGEND 292 (882)
Q Consensus 224 g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-----------l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 292 (882)
... .....++++++++.. +......+.+++|+...
T Consensus 207 ~~~--------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 252 (349)
T 1jmx_B 207 RHE--------------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-------------------- 252 (349)
T ss_dssp TCE--------------EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--------------------
T ss_pred cee--------------EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--------------------
Confidence 000 001144566655421 12233345555555421
Q ss_pred cccchhhhccccccCCCCCCcEEEeecC-CCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCC
Q 047837 293 TVSTAKATELYFKLTPTIPNAIACQFST-SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDP 371 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~ 371 (882)
....+..++|+| +++++..+ ++.|.+||+.+++.... +. ...
T Consensus 253 ----------------~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~---~~-----------------~~~ 295 (349)
T 1jmx_B 253 ----------------LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKA---AN-----------------LDH 295 (349)
T ss_dssp ----------------CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEE---EE-----------------CSS
T ss_pred ----------------CCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEE---Ec-----------------CCC
Confidence 112345789999 99876666 89999999987643221 11 122
Q ss_pred CcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeec
Q 047837 372 SVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKD 409 (882)
Q Consensus 372 ~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~ 409 (882)
.+.+++|+ +++++|++++.++.|.+||+.+++.+...
T Consensus 296 ~~~~~~~s-~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 296 TYYCVAFD-KKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp CCCEEEEC-SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred CccceEEC-CCCCEEEEecCCCeEEEEeccccceeeee
Confidence 35678888 78888888888999999999988776554
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2e-18 Score=183.60 Aligned_cols=243 Identities=11% Similarity=0.041 Sum_probs=174.8
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCC
Q 047837 376 VARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRG 455 (882)
Q Consensus 376 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 455 (882)
++++ +++.++++++.+++|.+||+.+++.+.....+
T Consensus 5 ~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~------------------------------------------- 40 (349)
T 1jmx_B 5 PALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP------------------------------------------- 40 (349)
T ss_dssp CCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------------------
T ss_pred cccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecC-------------------------------------------
Confidence 3444 67889999999999999999887654321110
Q ss_pred CEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC------CCCEEEEEEc
Q 047837 456 STLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH------SAAVTAVKFT 529 (882)
Q Consensus 456 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h------~~~v~~~~~s 529 (882)
....+..++|+|+++ .+++++..++.|.+||+.++ +....+..+ ...+..++|+
T Consensus 41 -------~~~~~~~~~~s~dg~------------~~~v~~~~~~~i~~~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~s 100 (349)
T 1jmx_B 41 -------DKFGPGTAMMAPDNR------------TAYVLNNHYGDIYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAIS 100 (349)
T ss_dssp -------SCCSSCEEEECTTSS------------EEEEEETTTTEEEEEETTTT-EEEEEEESCCSTTEEEECSSCEEEC
T ss_pred -------CCCCCceeEECCCCC------------EEEEEeCCCCcEEEEeCCCC-cEEEEEEcccccccccccccceEEC
Confidence 001233455666554 14456677899999999876 555555422 2237789999
Q ss_pred cCCCEEEEEeCC------------CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 047837 530 CNGRKILSCSAD------------RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSI 597 (882)
Q Consensus 530 ~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~ 597 (882)
|+|++|++++.+ +.|.+||+.+++...... ...+...+.+++|+|+|+ +++++. .|.+||+
T Consensus 101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~ 173 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR----TFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDV 173 (349)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE----EEECCSSCCCEEECTTSC-EEEESS--SEEEECT
T ss_pred CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee----eccCCCcccceeECCCCc-EEEccC--cEEEEeC
Confidence 999999988865 899999998643322111 111223688899999999 555543 4999999
Q ss_pred cCCceEEEEEecc------------------------------------------------------------------C
Q 047837 598 AAGKLIRSFKQAK------------------------------------------------------------------D 611 (882)
Q Consensus 598 ~~~~~~~~~~~~~------------------------------------------------------------------~ 611 (882)
.+++.+..+.... +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
T 1jmx_B 174 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 253 (349)
T ss_dssp TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence 9998877664211 0
Q ss_pred CCCcEEEEECC-CCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 612 FGDPMKVTVDP-SGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 612 ~~~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
...+..++|+| ||++|+++ ++.|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+.+...
T Consensus 254 ~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 254 TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 11345678889 99999988 88999999999998888763 3457899999999999998889999999998776555
Q ss_pred cc
Q 047837 691 NF 692 (882)
Q Consensus 691 ~~ 692 (882)
.+
T Consensus 331 ~~ 332 (349)
T 1jmx_B 331 NI 332 (349)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=5.2e-18 Score=199.10 Aligned_cols=392 Identities=11% Similarity=0.086 Sum_probs=231.3
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccc-----eeEEEECCCCCEEEEEc-----------CE
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYG-----VECIAFSPDGEHLVTVG-----------GY 109 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~-----V~~lafspdg~~Las~~-----------~~ 109 (882)
...+++|+|||++|+++ |+.|++||+.+++....+.+|... ...++|||||++|+.+. +.
T Consensus 18 ~~~~~~w~~dg~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE----TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCcEEEEc----CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 45689999999999996 679999999999998888887643 23488999999998877 35
Q ss_pred EEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCcc-ceeecCccccccccc
Q 047837 110 IYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTE-SLTLHAKPVNLGIQK 188 (882)
Q Consensus 110 i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 188 (882)
+.+||+.++++.. +..+. ..+...+|||||+.||.+.++.|.+|++.++...+........ .+.++..
T Consensus 94 ~~~~d~~~~~~~~-l~~~~--~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~-------- 162 (740)
T 4a5s_A 94 YDIYDLNKRQLIT-EERIP--NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD-------- 162 (740)
T ss_dssp EEEEETTTTEECC-SSCCC--TTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCC--------
T ss_pred EEEEECCCCcEEE-cccCC--CcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCccc--------
Confidence 6799999998654 44443 7899999999999999998899999999887652111100000 0000000
Q ss_pred cceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCC-eEEe
Q 047837 189 ESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNG-AVHL 267 (882)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg-~I~v 267 (882)
|..... ......+++|||||+.||.++.|. .+.+
T Consensus 163 -----------~v~~ee----------------------------------~~~~~~~~~wSpDg~~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 163 -----------WVYEEE----------------------------------VFSAYSALWWSPNGTFLAYAQFNDTEVPL 197 (740)
T ss_dssp -----------HHHHHH----------------------------------TSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred -----------ccccch----------------------------------hcCCCcceEECCCCCEEEEEEEcccCCce
Confidence 000000 000115689999999999887654 4888
Q ss_pred eecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEccc---cccc
Q 047837 268 FDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHD---VNEA 344 (882)
Q Consensus 268 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~---~~~~ 344 (882)
|++....... ...+....+.|.+.|.- .....|++||+++ ++..
T Consensus 198 ~~~~~~~~~~------------------------------~~~~~~~~~~yp~~G~~---~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 198 IEYSFYSDES------------------------------LQYPKTVRVPYPKAGAV---NPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp EEEEECCSTT------------------------------CSSCEEEEEECCBTTSC---CCEEEEEEEETTSCCSSSCC
T ss_pred EEEEeecCCC------------------------------CCCCcceeecCCCCcCc---CCeeEEEEEECCCCCCCCcc
Confidence 8765321100 11223345566665531 1234789999987 5321
Q ss_pred ceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC----CCcEEEEecCCCc----eeeecccCCccc
Q 047837 345 TRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA----DGTIRLWDLALQS----ELSKDVLGHESL 416 (882)
Q Consensus 345 ~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~----dg~i~vwd~~~~~----~~~~~~~~~~~~ 416 (882)
... .+.. .....+|...+..++|+ +|++.++.... +..|.+||+.+++ +.....
T Consensus 245 ~~~-~l~~----------~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~------ 306 (740)
T 4a5s_A 245 TSI-QITA----------PASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ------ 306 (740)
T ss_dssp CEE-EECC----------CHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC------
T ss_pred eEE-EecC----------CccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE------
Confidence 111 1110 00001245567778888 78886665532 3479999998876 111000
Q ss_pred eeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE-----EEEEecCCCCCccceeccCCceE
Q 047837 417 NIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL-----SLSFSLSSKKDDVLEEVTDSHYF 491 (882)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~ 491 (882)
+.-..|...|. ...|+|+++ .
T Consensus 307 -----------------------------------------l~~~~~~~~v~~~~~~~p~fspDG~-------------~ 332 (740)
T 4a5s_A 307 -----------------------------------------HIEMSTTGWVGRFRPSEPHFTLDGN-------------S 332 (740)
T ss_dssp -----------------------------------------EEEECSSSCSSSSSCCCCEECTTSS-------------E
T ss_pred -----------------------------------------eeeccCCceEccCcCCCceEcCCCC-------------E
Confidence 00011222111 345666655 4
Q ss_pred EE-EEc-CC--CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEeCccCccce--eeec
Q 047837 492 LA-SGG-RD--RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD-----RSLVVRDVVETNSAY--KISR 560 (882)
Q Consensus 492 l~-~g~-~d--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~ 560 (882)
++ ..+ .+ ..|++||+..+ . ...+......+..+.. +|++.|+..+.. +...||.+....... .+..
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~-~-~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~ 409 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKK-D-CTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC 409 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCS-S-CEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred EEEEEEcCCCceEEEEEECCCC-c-eEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence 44 443 33 45777787654 2 3344445556666542 456666644432 334555443222111 1111
Q ss_pred cceecccCCceEEEEEecCCCEEEEEeCC---CcEEEEEccCCceEEEEE
Q 047837 561 RHQQLASQGTVYDMDIDPTMEVVITVGQD---KKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 561 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~ 607 (882)
.. .........+.|+|++++++..... ..+.+++..+++.+..+.
T Consensus 410 ~~--~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 410 EL--NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp TT--STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred cc--CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 00 0122467889999999987765543 368888988887766654
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1e-17 Score=196.61 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=116.4
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCC-CCe--EEEEEcCCCCEEEEeecCC-------CCeEEEE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMP-KPL--CCVAMSRDGRYVAAGESGP-------QPAVLVW 73 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~-~~I--~~va~spdg~~la~g~~~~-------d~~I~vw 73 (882)
..+.|+|||. +++..++.|.+||+.+++...++.+|... ..+ ..++|||||++||+++.+. .+.+.+|
T Consensus 20 ~~~~w~~dg~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 20 YSLRWISDHE--YLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCEEECSSSE--EEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cccEECCCCc--EEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 3578999974 55556889999999999998888887631 122 3489999999999986511 1567899
Q ss_pred ECCCceeeEEeeccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccce-----------------eE
Q 047837 74 DCANLAFISELKGHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAI-----------------TS 135 (882)
Q Consensus 74 d~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v-----------------~~ 135 (882)
|+.+++.. .+..|...+...+|||||++||.+. +.|++||+.+++..+ +....+...+ ..
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcc
Confidence 99999864 4777888999999999999999998 999999999887554 2222111222 35
Q ss_pred EEEccCCCEEEEECC--CcEEEEEcc
Q 047837 136 ACFSSDAKFIVTAGK--KHLKFWTIG 159 (882)
Q Consensus 136 l~fs~d~~~l~~~~~--~~i~iwd~~ 159 (882)
++|||||+.||.... ..+.+|++.
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred eEECCCCCEEEEEEEcccCCceEEEE
Confidence 899999999998763 458888874
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=4.8e-19 Score=192.56 Aligned_cols=205 Identities=14% Similarity=0.102 Sum_probs=154.4
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc---------eeEE-----EeecCCCCEEEEEEcc
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF---------DLIE-----SIDDHSAAVTAVKFTC 530 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~---------~~~~-----~~~~h~~~v~~~~~s~ 530 (882)
..+..+++++.+. ++++++.++ +++|+..... .... ....+...|.+++|+|
T Consensus 37 ~~~n~lavs~~~~-------------~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 102 (434)
T 2oit_A 37 ERSSLLAVSNKYG-------------LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC 102 (434)
T ss_dssp SCCBCEEEETTTT-------------EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT
T ss_pred CCccEEEEecCCC-------------EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC
Confidence 3456677777766 788888887 8888754210 0011 1123567899999999
Q ss_pred CCCEEE----EEeCCCeEEEEeCccCc-----cceeeeccceecccCCceEEEEEecC-CCEEEEEeCCCcEEEEEccCC
Q 047837 531 NGRKIL----SCSADRSLVVRDVVETN-----SAYKISRRHQQLASQGTVYDMDIDPT-MEVVITVGQDKKINSFSIAAG 600 (882)
Q Consensus 531 ~~~~l~----s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~ 600 (882)
++++|+ +++.|+.|++||+.+.. ....+.......+|...|.+++|+|+ +.+|++++.|++|++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 999999 78889999999997541 11000011122245679999999998 789999999999999999998
Q ss_pred ceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC-------CCeEEEEECCCCCEEEEEe
Q 047837 601 KLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG-------EVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 601 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~s~d~~~l~s~~ 673 (882)
..+.... +|...+.+++|+|+|++|++|+.||.|++||++ ++....+..|. ..|.+++|++++.++++.+
T Consensus 183 ~~~~~~~--~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 183 VKVCATL--PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp EEEEEEE--CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred cceeecc--CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 7665555 688899999999999999999999999999998 66666665443 3899999999998886543
Q ss_pred -CCC------eEEEEeCCCC
Q 047837 674 -GDG------LQRVKEKYGI 686 (882)
Q Consensus 674 -~dg------~i~vwd~~~~ 686 (882)
.|| .+++|++...
T Consensus 260 ~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 260 AADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTCCSSSCCEEEEEECCCT
T ss_pred cCCCccCCCCceEEEEeccC
Confidence 443 3899999754
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=3.7e-17 Score=174.61 Aligned_cols=277 Identities=11% Similarity=0.135 Sum_probs=171.0
Q ss_pred EEEeecCCCeEE-EEeCC----ceEEEEEcccc-cccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 314 IACQFSTSEKLV-VVYGD----HSLYVWDIHDV-NEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 314 ~~~~~s~~~~ll-~~~~d----~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
..++|+|+|++| +++.+ +.|.+|+++.. ........... +......+++ ++++|+
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~----------------~~~~p~~~~~---dg~~l~ 113 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT----------------MGADPCYLTT---NGKNIV 113 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC----------------SSSCEEEEEE---CSSEEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc----------------CCCCcEEEEE---CCCEEE
Confidence 358999999844 45544 79999998753 11111111111 1223334444 566666
Q ss_pred Eee-CCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccce
Q 047837 388 TCS-ADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAE 466 (882)
Q Consensus 388 t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 466 (882)
+++ .++.|.+|++.....+.... ..+.....+. .....+...
T Consensus 114 ~~~~~~~~v~~~~~~~~g~~~~~~------------------------------------~~~~~~g~~~-~~~~~~~~~ 156 (361)
T 3scy_A 114 TANYSGGSITVFPIGQDGALLPAS------------------------------------DVIEFKGSGP-DKERQTMPH 156 (361)
T ss_dssp EEETTTTEEEEEEBCTTSCBCSCS------------------------------------EEEECCCCCS-CTTTCSSCC
T ss_pred EEECCCCEEEEEEeCCCCcCcccc------------------------------------eeEEccCCCC-CccccCCCc
Confidence 665 68899999997544332110 0000000000 000112334
Q ss_pred EEEEEEecCCCCCccceeccCCceEE-EEEcCCCcEEEEEcCCCce------e------EEEeecCCCCEEEEEEccCCC
Q 047837 467 ILSLSFSLSSKKDDVLEEVTDSHYFL-ASGGRDRTIHLYDVKRNFD------L------IESIDDHSAAVTAVKFTCNGR 533 (882)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~v~iwd~~~~~~------~------~~~~~~h~~~v~~~~~s~~~~ 533 (882)
+.+++|+|+++ ++ ++...++.|.+|++..... + ......+...+..++|+|||+
T Consensus 157 ~~~~~~spdg~-------------~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 157 LHCVRITPDGK-------------YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp EEEEEECTTSS-------------EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred ceEEEECCCCC-------------EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 56677777776 44 4555688999999876432 1 122233456788999999999
Q ss_pred EEEEEe-CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC--CcEEEEEcc--CCc--eEEEE
Q 047837 534 KILSCS-ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD--KKINSFSIA--AGK--LIRSF 606 (882)
Q Consensus 534 ~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~--~~~--~~~~~ 606 (882)
++++++ .++.|.+|++.++.. ...........+......++|+|||++|+++..+ +.|.+|++. +++ .+..+
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 888777 689999999985432 1111111111223456899999999998776655 899999995 455 33344
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEE--ccCCeEEEEE-ccCCCCeEEEEEC
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSY-SNKSICLYD--FISGEMVAKA-MGHGEVITGVTFL 663 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~-~dg~i~iwd--~~~~~~~~~~-~~h~~~v~~l~~s 663 (882)
. . ...+..++|+|||++|++++ .++.|.+|+ ..+|+..... ..+...+.++.|.
T Consensus 303 ~--~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 303 L--T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp E--C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred c--C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 3 3 56788999999999988887 678999964 4577765443 2255678899885
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1.2e-16 Score=170.53 Aligned_cols=251 Identities=11% Similarity=0.162 Sum_probs=165.2
Q ss_pred CCCcceeeeccCCCcEEEEeeCC----CcEEEEecCCC-ceeeecccCCccceeeecCCcceEeeeeeeeeeeeeecccc
Q 047837 370 DPSVSCVARGCTGGVSFSTCSAD----GTIRLWDLALQ-SELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQ 444 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~d----g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (882)
...+..++|+ +++++|++++.+ +.|.+|++... ..+..
T Consensus 49 ~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~------------------------------------ 91 (361)
T 3scy_A 49 VANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL------------------------------------ 91 (361)
T ss_dssp CSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE------------------------------------
T ss_pred CCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE------------------------------------
Confidence 4556678888 899999888876 79999998753 11110
Q ss_pred CeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCcee---EEE--eec-
Q 047837 445 GYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDL---IES--IDD- 518 (882)
Q Consensus 445 ~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~---~~~--~~~- 518 (882)
+. ....+......+++ +++ .++++...++.|.+|++...... ... ..+
T Consensus 92 ----~~--------~~~~~~~~p~~~~~--dg~------------~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 92 ----LN--------TQKTMGADPCYLTT--NGK------------NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp ----EE--------EEECSSSCEEEEEE--CSS------------EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred ----ee--------EeccCCCCcEEEEE--CCC------------EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 00 01112233444444 433 13444457889999999753221 111 111
Q ss_pred -------CCCCEEEEEEccCCCEEEEEe-CCCeEEEEeCccCcc------ceee-eccceecccCCceEEEEEecCCCEE
Q 047837 519 -------HSAAVTAVKFTCNGRKILSCS-ADRSLVVRDVVETNS------AYKI-SRRHQQLASQGTVYDMDIDPTMEVV 583 (882)
Q Consensus 519 -------h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~------~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l 583 (882)
+...+.+++|+|+|++|++++ .++.|.+|++..... .... ...............++|+|||+++
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence 123468899999999776555 588999999875442 1111 0011112233467899999999988
Q ss_pred EEEe-CCCcEEEEEccCCceE--EEEEe-ccCCCCcEEEEECCCCCEEEEEeC--CCcEEEEEcc--CCe--EEEEEccC
Q 047837 584 ITVG-QDKKINSFSIAAGKLI--RSFKQ-AKDFGDPMKVTVDPSGSYLVCSYS--NKSICLYDFI--SGE--MVAKAMGH 653 (882)
Q Consensus 584 ~~~~-~d~~v~iwd~~~~~~~--~~~~~-~~~~~~v~~~~~spdg~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~h 653 (882)
++++ .++.|.+||+.+++.. ..+.. ..+...+..++|+|||++|+++.. ++.|.+|++. +++ .+..+..
T Consensus 226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~- 304 (361)
T 3scy_A 226 YLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT- 304 (361)
T ss_dssp EEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-
T ss_pred EEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-
Confidence 7777 6899999999977542 23321 123355789999999999876665 4899999995 454 4555554
Q ss_pred CCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q 047837 654 GEVITGVTFLPDCKHIVSVG-GDGLQRVKEKY 684 (882)
Q Consensus 654 ~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~ 684 (882)
...+..++|+|||++|++++ .++.|.+|++.
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 56788999999999998887 67899997654
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=1.6e-18 Score=198.19 Aligned_cols=255 Identities=10% Similarity=0.117 Sum_probs=181.2
Q ss_pred CCCcceeeeccCCCcEEEEeeC-CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSA-DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
..+|.+++|+ +||+.|++++. ||++++|++.+++...
T Consensus 21 ~~~~~~~~~~-~DG~~la~~s~~~g~~~lw~~~~g~~~~----------------------------------------- 58 (582)
T 3o4h_A 21 AVEKYSLQGV-VDGDKLLVVGFSEGSVNAYLYDGGETVK----------------------------------------- 58 (582)
T ss_dssp HSCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTEEEE-----------------------------------------
T ss_pred ccchheeecC-CCCCeEEEEEccCCceeEEEEcCCCcEe-----------------------------------------
Confidence 4567888888 89999999887 9999999986544321
Q ss_pred EEEcCCCCEEEeeecc-ceEEEEEEecCCCCCccceeccCCceEEEEEcC---CCcEEEEEcCC--CceeEEEeecCCCC
Q 047837 449 MAVSSRGSTLLLDAHD-AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGR---DRTIHLYDVKR--NFDLIESIDDHSAA 522 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~v~iwd~~~--~~~~~~~~~~h~~~ 522 (882)
+..|. ..+..++|+|+ + ++++++. +....+|.+.. ..... .+.. ...
T Consensus 59 -----------lt~~~~~~~~~~~~spd-~-------------~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~ 111 (582)
T 3o4h_A 59 -----------LNREPINSVLDPHYGVG-R-------------VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKP 111 (582)
T ss_dssp -----------CCSSCCSEECEECTTCS-E-------------EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCS
T ss_pred -----------eecccccccccccCCCC-e-------------EEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCC
Confidence 12233 46777777776 4 6776654 45566665543 22222 3332 223
Q ss_pred EEEEEEccCCCE--EEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC----CcEEEEE
Q 047837 523 VTAVKFTCNGRK--ILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD----KKINSFS 596 (882)
Q Consensus 523 v~~~~~s~~~~~--l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd 596 (882)
+...+|+|||+. ++++..+ .+.+||+.+++. ..+.. + .. .+++|+|||++|++++.+ +.|++||
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~-~~l~~-~-----~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATED-RVALYALDGGGL-RELAR-L-----PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSS-CEEEEEEETTEE-EEEEE-E-----SS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred ceeeeeCCCCCeEEEEecCCC-CceEEEccCCcE-EEeec-C-----CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 446788888864 3444444 456999986543 22221 1 12 789999999999988877 7899999
Q ss_pred ccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCC--cEEEEEccCCeEEEEEccCCCCeEEEE--------ECCCC
Q 047837 597 IAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK--SICLYDFISGEMVAKAMGHGEVITGVT--------FLPDC 666 (882)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~--------~s~d~ 666 (882)
+.+++.. .+. .+...+..++|||||++|+++..++ .|++||+.+++.. .+.+|...+..++ |+|||
T Consensus 182 ~~~g~~~-~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg 257 (582)
T 3o4h_A 182 LSSGGLR-VFD--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG 257 (582)
T ss_dssp TTTCCCE-EEC--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS
T ss_pred CCCCCce-Eee--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC
Confidence 9988765 444 6778889999999999999888888 8999999999887 7777888787777 99999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEEE
Q 047837 667 KHIVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKCR 712 (882)
Q Consensus 667 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 712 (882)
+++++++.|+.+++|++ +.... .....+..+.|+ ++..++.
T Consensus 258 ~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 258 RLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp CEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEE
T ss_pred cEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEE
Confidence 99999999999999999 33222 222445567777 5554443
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=1.4e-16 Score=168.79 Aligned_cols=303 Identities=12% Similarity=0.071 Sum_probs=196.7
Q ss_pred cCCCEEEEEe------cCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeE
Q 047837 251 ASSKLIACAC------SNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKL 324 (882)
Q Consensus 251 ~d~~~l~~~~------~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 324 (882)
++++++++.. .|+.|.+||..+++.+.++.. . ... .++|+||++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~---------------------------g-~~p-~i~~spdg~~ 63 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT---------------------------A-FNG-HVQVSNDGKK 63 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC---------------------------C-EEE-EEEECTTSSE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecC---------------------------C-CCC-ceEECCCCCE
Confidence 3556666653 478999999998877655431 1 112 6899999985
Q ss_pred EEEe-----------CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC--
Q 047837 325 VVVY-----------GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA-- 391 (882)
Q Consensus 325 l~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~-- 391 (882)
+... .++.|.+||..+.+.........+ ...+......++++ ++|++|+++..
T Consensus 64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~-------------~~~~g~~p~~i~~s-pdg~~l~v~n~~~ 129 (361)
T 2oiz_A 64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK-------------RVQGLNYDGLFRQT-TDGKFIVLQNASP 129 (361)
T ss_dssp EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT-------------BCCBCCCGGGEEEC-TTSSEEEEEEESS
T ss_pred EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc-------------ccccCCCcceEEEC-CCCCEEEEECCCC
Confidence 5443 257899999976654332211110 01123456778888 89999988764
Q ss_pred CCcEEEEecCCCceeee-cccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEE
Q 047837 392 DGTIRLWDLALQSELSK-DVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSL 470 (882)
Q Consensus 392 dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~ 470 (882)
+++|.+||+.+++.+.. ...+. ... +
T Consensus 130 ~~~v~v~d~~~~~~~~~~i~~~~--------------------------------~~~---------------------v 156 (361)
T 2oiz_A 130 ATSIGIVDVAKGDYVEDVTAAAG--------------------------------CWS---------------------V 156 (361)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTT--------------------------------EEE---------------------E
T ss_pred CCeEEEEECCCCcEEEEEecCCC--------------------------------cce---------------------e
Confidence 58999999998765433 21110 111 1
Q ss_pred EEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE------eecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 471 SFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES------IDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~------~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
.+.|++. ..+++.+.||.+.+|+.....+.... +..+..++ .+.+++++..++..+.++.+
T Consensus 157 ~~~p~~~------------~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v 223 (361)
T 2oiz_A 157 IPQPNRP------------RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNV 223 (361)
T ss_dssp EECTTSS------------SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEE
T ss_pred EEcCCCC------------eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeE
Confidence 2223221 14566667777877777542233211 11122222 33446788888888889999
Q ss_pred EEEeCccCccceeee-ccce--eccc---CCceEEEEEecCCCEEEEEeC-----------CCcEEEEEccCCceEEEEE
Q 047837 545 VVRDVVETNSAYKIS-RRHQ--QLAS---QGTVYDMDIDPTMEVVITVGQ-----------DKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~-~~~~--~~~~---~~~v~~~~~sp~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~ 607 (882)
.++|+.......... .... .... ......++|+|+++.++++.. ...|.+||+.+++.+.++.
T Consensus 224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~ 303 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP 303 (361)
T ss_dssp EEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe
Confidence 999987443221100 0000 0000 011223789999888777643 3479999999999999997
Q ss_pred eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCC--eEEEEEccCCCCeEEEEECCCCC
Q 047837 608 QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISG--EMVAKAMGHGEVITGVTFLPDCK 667 (882)
Q Consensus 608 ~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~d~~ 667 (882)
.+. +..++|+|||++|++++. +.|.+||..++ +.+..+..+......++|+|||+
T Consensus 304 --~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 304 --GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp --CTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred --cCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 444 999999999999998887 99999999999 99999877788889999999985
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=1.2e-17 Score=181.53 Aligned_cols=257 Identities=14% Similarity=0.101 Sum_probs=173.3
Q ss_pred CCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 370 DPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 370 ~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
...++.++++ +++.++++++.|+ +++|+......... ..... ....
T Consensus 36 ~~~~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~--~~~~~------------------------------~~~~ 81 (434)
T 2oit_A 36 KERSSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNK--PGDDP------------------------------NKIV 81 (434)
T ss_dssp CSCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCC--TTCCT------------------------------TCEE
T ss_pred CCCccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcc--cccCc------------------------------cccc
Confidence 4567888888 6788899998887 89988653211000 00000 0000
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEE----EEcCCCcEEEEEcCCC-----c-----eeEEE
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLA----SGGRDRTIHLYDVKRN-----F-----DLIES 515 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~----~g~~dg~v~iwd~~~~-----~-----~~~~~ 515 (882)
...+. ....+...|.+++|+|+++ +|+ +|+.|+.|+|||+.+. . .....
T Consensus 82 ~~~~~----~~~~~~~~v~~l~~spdg~-------------~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 144 (434)
T 2oit_A 82 DKVQG----LLVPMKFPIHHLALSCDNL-------------TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL 144 (434)
T ss_dssp ECCCC----EEECCSSCEEEEEECTTSC-------------EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC
T ss_pred ccCcc----ccccCCCcccEEEEcCCCC-------------EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec
Confidence 00000 1124567899999999988 788 7899999999998653 1 12456
Q ss_pred eecCCCCEEEEEEccC-CCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 047837 516 IDDHSAAVTAVKFTCN-GRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINS 594 (882)
Q Consensus 516 ~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i 594 (882)
+.+|...|.+++|+|+ +.+|++++.||+|++||++++...... ..|...|.+++|+|+|++|++|+.|+.|++
T Consensus 145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~------~~~~~~v~~v~wspdg~~lasgs~dg~v~i 218 (434)
T 2oit_A 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQ 218 (434)
T ss_dssp CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE------ECGGGCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec------cCCCCceeEEEEcCCCCEEEEEcCCCcEEE
Confidence 6779999999999997 899999999999999999866332211 234568999999999999999999999999
Q ss_pred EEccCCceEEEEEecc-----CCCCcEEEEECCCCCEEEEE-eCCC------cEEEEEccCCe-----EEEEEcc-----
Q 047837 595 FSIAAGKLIRSFKQAK-----DFGDPMKVTVDPSGSYLVCS-YSNK------SICLYDFISGE-----MVAKAMG----- 652 (882)
Q Consensus 595 wd~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~l~~~-~~dg------~i~iwd~~~~~-----~~~~~~~----- 652 (882)
||++ ++....+..+. |...+.+++|++++.++++. ..+| .+++|++...+ ....+..
T Consensus 219 wd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~ 297 (434)
T 2oit_A 219 YLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGS 297 (434)
T ss_dssp ECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCC
T ss_pred EccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCC
Confidence 9998 66666664221 22378999999998888653 3443 38999997542 2222211
Q ss_pred --CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q 047837 653 --HGEVITGVTFLPDCKHIVSVG-GDGLQRVKEKY 684 (882)
Q Consensus 653 --h~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~ 684 (882)
...+-..+.+-+|.++|++++ ..+.|.|....
T Consensus 298 ~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 298 CTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 112222333447777776665 45557777643
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=6.4e-17 Score=174.81 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=94.7
Q ss_pred EEEEECCCCceEEEEEecCCCCCeEE-----EEEcCCCCEEEEeec-CCCCeEEEEECCCceeeEEeeccccceeEEEEC
Q 047837 24 LVVYDVDSSTQSHLMVSHRMPKPLCC-----VAMSRDGRYVAAGES-GPQPAVLVWDCANLAFISELKGHLYGVECIAFS 97 (882)
Q Consensus 24 v~vwd~~~~~~~~~l~~h~~~~~I~~-----va~spdg~~la~g~~-~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafs 97 (882)
...+|..++.....++.|. ..... .+|||||++||+++. ++...|.+||+.+++......+|...+..++||
T Consensus 12 ~~~~~~~~g~~~~~lt~~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPD--VTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp EEEECTTTCCEEEECSCTT--SCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred eEEecCCCCcceEEecCCc--ccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence 3456888898888888776 55655 889999999999875 223369999999999888777777777788999
Q ss_pred CCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEE--EEccCCCEEEE
Q 047837 98 PDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSA--CFSSDAKFIVT 147 (882)
Q Consensus 98 pdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l--~fs~d~~~l~~ 147 (882)
|||++|+.++ +.|++||+.+++.......+. ..+... .+++|+++++.
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPA--EWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeechh--hcccccceeECCCCCeecc
Confidence 9999999988 799999999998776666554 444333 45899999875
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.4e-16 Score=170.00 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=131.5
Q ss_pred CCCcEEEEEcCCCceeEEEee----cCCCCEEEEEEccCCCEEEEEe-CCCeEEEEeCc-cCccceeeeccceecccCCc
Q 047837 497 RDRTIHLYDVKRNFDLIESID----DHSAAVTAVKFTCNGRKILSCS-ADRSLVVRDVV-ETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 497 ~dg~v~iwd~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~ 570 (882)
.++.+.+|++.........+. .+...+.+++|+|||++|+++. .++.|++|++. +++.. .... .....+...
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~-~~~~-~~~~~~g~~ 194 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE-LVGS-VDAPDPGDH 194 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE-EEEE-EECSSTTCC
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE-Eeee-EecCCCCCC
Confidence 688999999974324433333 2556799999999999888765 46799999997 44321 1111 110012356
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEEcc--CCceEE---EEEec-----cCCC------CcEEEE-ECCCCCEEEEEeC
Q 047837 571 VYDMDIDPTMEVVITVGQ-DKKINSFSIA--AGKLIR---SFKQA-----KDFG------DPMKVT-VDPSGSYLVCSYS 632 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~-d~~v~iwd~~--~~~~~~---~~~~~-----~~~~------~v~~~~-~spdg~~l~~~~~ 632 (882)
+..++|+|||+++++++. ++.|.+|++. +++... .+... ++.. .+..++ |+|||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 899999999999888775 6899999865 566532 23211 1111 478999 9999999887654
Q ss_pred C-C-----cEEEEEcc-CCeEEE---EEccCCCCeEEEEECC---CCCEEEEEeCC-CeEEEEeCCCC
Q 047837 633 N-K-----SICLYDFI-SGEMVA---KAMGHGEVITGVTFLP---DCKHIVSVGGD-GLQRVKEKYGI 686 (882)
Q Consensus 633 d-g-----~i~iwd~~-~~~~~~---~~~~h~~~v~~l~~s~---d~~~l~s~~~d-g~i~vwd~~~~ 686 (882)
+ + .|.+|++. +|+... ....+...+..++|+| ||++|++++.+ +.|++|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 2 89999996 676543 2333555677899999 89999999864 89999998654
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=1.8e-16 Score=169.14 Aligned_cols=155 Identities=9% Similarity=0.028 Sum_probs=111.2
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECC-CCceEEEEEecCCCCCeEEEEEcCCCCE--EEEee------cC-----CCC
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVD-SSTQSHLMVSHRMPKPLCCVAMSRDGRY--VAAGE------SG-----PQP 68 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~-~~~~~~~l~~h~~~~~I~~va~spdg~~--la~g~------~~-----~d~ 68 (882)
|..++++|||. .++......|.+||++ +++...... +...+.+.+++|+|||++ ++++. .+ .++
T Consensus 42 ~~~~a~spdg~-~l~~~~~~~v~~~~~~~~g~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 42 ISWMTFDHERK-NIYGAAMKKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CSEEEECTTSS-EEEEEEBTEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CcEEEECCCCC-EEEEEccceEEEEEECCCCCEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 56789999987 3333333389999997 777655433 221134667999999994 55553 01 478
Q ss_pred eEEEEECC-CceeeEEee----ccccceeEEEECCCCCEEEEEc---CEEEEEEcC-cceee--eeeecCCcccceeEEE
Q 047837 69 AVLVWDCA-NLAFISELK----GHLYGVECIAFSPDGEHLVTVG---GYIYLWNWR-SAMLV--MKLKANSSCSAITSAC 137 (882)
Q Consensus 69 ~I~vwd~~-t~~~~~~l~----~h~~~V~~lafspdg~~Las~~---~~i~iWd~~-~g~~~--~~~~~~~~~~~v~~l~ 137 (882)
.+.+|++. +++....+. .+...+.+++|+|||++|++++ +.|.+||+. +|++. ..+....+...+..++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 99999997 576655444 2556799999999999998876 799999998 77653 3333221126789999
Q ss_pred EccCCCEEEEECC--CcEEEEEcc
Q 047837 138 FSSDAKFIVTAGK--KHLKFWTIG 159 (882)
Q Consensus 138 fs~d~~~l~~~~~--~~i~iwd~~ 159 (882)
|+|||++|+++.. +.|.+|+++
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEECCCCeEEEEEEe
Confidence 9999999887763 689999876
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=4.2e-16 Score=168.32 Aligned_cols=300 Identities=11% Similarity=0.014 Sum_probs=176.3
Q ss_pred EeecCCCeEE-EEeC-Cc--eEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC
Q 047837 316 CQFSTSEKLV-VVYG-DH--SLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA 391 (882)
Q Consensus 316 ~~~s~~~~ll-~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~ 391 (882)
.+|+|||+.| .++. ++ .|.+||+.+++... ... .+...+..++|+ ++++.|+.++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~----------------~~~~~~~~~~~s-pdg~~l~~~~~ 100 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTE----------------GRGDNTFGGFLS-PDDDALFYVKD 100 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCC----------------SSCBCSSSCEEC-TTSSEEEEEET
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eee----------------CCCCCccceEEc-CCCCEEEEEeC
Confidence 5799999844 4554 55 48888887654321 111 233344456787 89999999999
Q ss_pred CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEE
Q 047837 392 DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLS 471 (882)
Q Consensus 392 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~ 471 (882)
++.|.+||+.+++......... .......+.++++++.+........ .
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~----------------------------~~~~~~~~~~~~dg~~l~~~~~~~~----~ 148 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPA----------------------------EWVGYGTWVANSDCTKLVGIEIRRE----D 148 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCT----------------------------TEEEEEEEEECTTSSEEEEEEEEGG----G
T ss_pred CCeEEEEECCCCcceeeeechh----------------------------hcccccceeECCCCCeeccccccCc----c
Confidence 9999999999876432111000 0000111233555554321000000 0
Q ss_pred EecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCC------CeE
Q 047837 472 FSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSAD------RSL 544 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d------g~i 544 (882)
+.+........ ..+....+..|.+||+.++ + ...+..+...+..++|+| ||+.|+....+ ..|
T Consensus 149 ~~~~~~~~~~~--------~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (388)
T 3pe7_A 149 WVPLTDWKKFH--------EFYFTKPCCRLMRVDLKTG-E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM 218 (388)
T ss_dssp CCCCCSHHHHH--------HHGGGCCCEEEEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred cccccccchhh--------hhhccCCcceEEEEECCCC-c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence 00000000000 0011234567999999876 3 334445677899999999 99999877753 367
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-CC----cEEEEEccCCceEEEEEeccCC---CCcE
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-DK----KINSFSIAAGKLIRSFKQAKDF---GDPM 616 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~----~v~iwd~~~~~~~~~~~~~~~~---~~v~ 616 (882)
.++|..... ...+.... ....+..++|+|||+.|+..+. ++ .|++||+.+++.........+. ....
T Consensus 219 ~~~d~~~~~-~~~l~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 293 (388)
T 3pe7_A 219 WLINEDGTN-MRKVKTHA----EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYD 293 (388)
T ss_dssp EEEETTSCC-CEESCCCC----TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTT
T ss_pred EEEeCCCCc-eEEeeeCC----CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCC
Confidence 778876432 22221111 0125778899999997765443 22 3999999988754332211200 0122
Q ss_pred EEEECCCCCEEEEE---------eCCCcEEEEEccCCeEEEEEccCCC-----------CeEEEEECCCCCEEEEEe-CC
Q 047837 617 KVTVDPSGSYLVCS---------YSNKSICLYDFISGEMVAKAMGHGE-----------VITGVTFLPDCKHIVSVG-GD 675 (882)
Q Consensus 617 ~~~~spdg~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~s~d~~~l~s~~-~d 675 (882)
.++|+|||++|+.. ..+..|++||+.+++. ..+..|.. .+..++|+|||++|+..+ .+
T Consensus 294 ~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 294 GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp SSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence 23799999988854 4566899999998875 44555655 578899999999888766 56
Q ss_pred CeEEEEeC
Q 047837 676 GLQRVKEK 683 (882)
Q Consensus 676 g~i~vwd~ 683 (882)
|...||.+
T Consensus 373 g~~~l~~~ 380 (388)
T 3pe7_A 373 GKPALYLA 380 (388)
T ss_dssp SSCEEEEE
T ss_pred CceeEEEE
Confidence 76666654
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=7.9e-17 Score=174.64 Aligned_cols=119 Identities=7% Similarity=0.024 Sum_probs=84.4
Q ss_pred EEEEECCCCceEEEEEecCCC---CCeEEEEEcCCCCEEEEeec-CCCCeEEEEECCCceeeEEeeccccceeEEEECCC
Q 047837 24 LVVYDVDSSTQSHLMVSHRMP---KPLCCVAMSRDGRYVAAGES-GPQPAVLVWDCANLAFISELKGHLYGVECIAFSPD 99 (882)
Q Consensus 24 v~vwd~~~~~~~~~l~~h~~~---~~I~~va~spdg~~la~g~~-~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspd 99 (882)
....|..++..+..+..+... ..+..++|||||++||.... +++..|.+||+.+++......++......+.||||
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 456688999887777665410 12778899999999888754 23457999999998875544433333344889999
Q ss_pred CCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC
Q 047837 100 GEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK 150 (882)
Q Consensus 100 g~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~ 150 (882)
|++|+.++ +.|++||+.+++.......+. . |+++++.|+....
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--~------~~~~g~~l~~~~~ 136 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDE--E------WKGYGTWVANSDC 136 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCT--T------EEEEEEEEECTTS
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEeccc--c------cCCCCCEEEeccC
Confidence 99998887 789999999887665554442 2 6677777665543
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=5e-15 Score=156.90 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=102.1
Q ss_pred ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec--------CCCCeEEEEECCCceeeEEeecc-----
Q 047837 21 GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES--------GPQPAVLVWDCANLAFISELKGH----- 87 (882)
Q Consensus 21 ~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~--------~~d~~I~vwd~~t~~~~~~l~~h----- 87 (882)
++.|.+||.++++.+..+..+. .+ .++|||||++|+++.. ..++.|.+||..+++.+.++..+
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~--~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAF--NG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCE--EE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEECCCCeEEEEecCCC--CC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 3589999999999988877665 44 8999999999999852 12567999999999999887642
Q ss_pred -ccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeee-eecCCcccceeEEEEccCC--CEEEEECCCcEEEEEcc
Q 047837 88 -LYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMK-LKANSSCSAITSACFSSDA--KFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 88 -~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~-~~~~~~~~~v~~l~fs~d~--~~l~~~~~~~i~iwd~~ 159 (882)
......++|+|||++|+++. +.|.+||+.+++.+.. +.... ...+.+.|++ .+++.+.+|.+.+|++.
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 34567899999999998875 6899999999999887 66432 2335677765 34444566888888875
Q ss_pred c
Q 047837 160 S 160 (882)
Q Consensus 160 ~ 160 (882)
.
T Consensus 182 ~ 182 (361)
T 2oiz_A 182 E 182 (361)
T ss_dssp T
T ss_pred C
Confidence 4
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=1.6e-15 Score=159.06 Aligned_cols=209 Identities=11% Similarity=0.063 Sum_probs=156.5
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe---------ecCCCCEEEEEEcc-CCC
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI---------DDHSAAVTAVKFTC-NGR 533 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~---------~~h~~~v~~~~~s~-~~~ 533 (882)
......+++++++. ++++...++.|++||.......+..+ ..+......++++| ++.
T Consensus 90 ~~~p~gia~d~~g~-------------l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 90 FYLPHGLSIDTDGN-------------YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp CSSEEEEEECTTSC-------------EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred cCCceEEEECCCCC-------------EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 34567778888776 78888889999999986542244444 34455789999999 788
Q ss_pred EEEEEe-CCCeEEEEeCccCccceeeecccee----cccCCceEEEEEecC-CCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 534 KILSCS-ADRSLVVRDVVETNSAYKISRRHQQ----LASQGTVYDMDIDPT-MEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 534 ~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
++++.+ .++.|++|+.. +.....+...... ..+......++++|+ +.++++...++.|++||..+|+.+..+.
T Consensus 157 lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 888886 68999999944 3333222111100 011235789999998 7777777788999999999999999886
Q ss_pred eccCCCCcEEEEECC------CCCEEEEEeCCCcEEEEEccCCeEEEEEc---cCCCCeEEEEECCCCCEEEEEeCCCeE
Q 047837 608 QAKDFGDPMKVTVDP------SGSYLVCSYSNKSICLYDFISGEMVAKAM---GHGEVITGVTFLPDCKHIVSVGGDGLQ 678 (882)
Q Consensus 608 ~~~~~~~v~~~~~sp------dg~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~d~~~l~s~~~dg~i 678 (882)
...+...+..++|+| +|+..++...+..|++||..+++.+..+. ++...+..|+++|||.++++...++.|
T Consensus 236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 236 HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 556677889999999 33333333345689999999999998873 577789999999999888888899999
Q ss_pred EEEeCCCC
Q 047837 679 RVKEKYGI 686 (882)
Q Consensus 679 ~vwd~~~~ 686 (882)
++|++.+.
T Consensus 316 ~~~~~~~~ 323 (329)
T 3fvz_A 316 WKFTLTEK 323 (329)
T ss_dssp EEEEEEEC
T ss_pred EEEeCCcc
Confidence 99998754
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=3.9e-16 Score=169.16 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=66.9
Q ss_pred EEEEECCCceeeEEeeccccc-----eeEEEECCCCCEEEEEc-----CEEEEEEcCcceeeeeeecCCcccceeEEEEc
Q 047837 70 VLVWDCANLAFISELKGHLYG-----VECIAFSPDGEHLVTVG-----GYIYLWNWRSAMLVMKLKANSSCSAITSACFS 139 (882)
Q Consensus 70 I~vwd~~t~~~~~~l~~h~~~-----V~~lafspdg~~Las~~-----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs 139 (882)
....|..+++.+..|..+... +..++|||||++|+.+. ..|.+||+.+++.......+. .....+.|+
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~s 89 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIS 89 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEEC
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceEC
Confidence 445688899888888766444 78899999999998775 479999999887654433221 223347889
Q ss_pred cCCCEEEEECC-CcEEEEEcccCcc
Q 047837 140 SDAKFIVTAGK-KHLKFWTIGSSAT 163 (882)
Q Consensus 140 ~d~~~l~~~~~-~~i~iwd~~~~~~ 163 (882)
|||+.|+..+. +.|.+|++.+++.
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCE
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCc
Confidence 99998877765 5788888876543
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=8e-14 Score=154.95 Aligned_cols=153 Identities=9% Similarity=0.010 Sum_probs=116.6
Q ss_pred CCCccccCCCCCeEEEee--ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECC--Cc
Q 047837 3 PNHNIKKPDSSSKCAYVA--GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCA--NL 78 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~--~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~--t~ 78 (882)
|....+..|...+++... ++.|.++|..+++.+..+... ..+..++|||||+++++++. ++.|.+||+. ++
T Consensus 156 P~~~~~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---~~p~~v~~SpDGr~lyv~~~--dg~V~viD~~~~t~ 230 (567)
T 1qks_A 156 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---YAVHISRLSASGRYLFVIGR--DGKVNMIDLWMKEP 230 (567)
T ss_dssp CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEET--TSEEEEEETTSSSC
T ss_pred ccccccccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---CCccceEECCCCCEEEEEcC--CCeEEEEECCCCCC
Confidence 445556666433333333 469999999999998887543 45779999999999999864 8899999996 88
Q ss_pred eeeEEeeccccceeEEEEC----CCCCEEEEEc---CEEEEEEcCcceeeeeeecCC--------c-ccceeEEEEccCC
Q 047837 79 AFISELKGHLYGVECIAFS----PDGEHLVTVG---GYIYLWNWRSAMLVMKLKANS--------S-CSAITSACFSSDA 142 (882)
Q Consensus 79 ~~~~~l~~h~~~V~~lafs----pdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~--------~-~~~v~~l~fs~d~ 142 (882)
+.+.++.... ....++|| |||++|+++. ++|.|+|..+.+.+..+.... + ...+..+.+++++
T Consensus 231 ~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 231 TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 8888887543 35799999 6999999888 999999999999998876432 0 1267889999987
Q ss_pred CEEEEE-CC-CcEEEEEcccC
Q 047837 143 KFIVTA-GK-KHLKFWTIGSS 161 (882)
Q Consensus 143 ~~l~~~-~~-~~i~iwd~~~~ 161 (882)
..++.. .+ |.|.++|....
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCS
T ss_pred CEEEEEecCCCeEEEEecCCC
Confidence 665554 33 78888887643
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=9.2e-15 Score=150.17 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=175.3
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEE
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRS 448 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (882)
+-..+.+++++ ++++++++...++.|.+||.. ++.......
T Consensus 28 ~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~------------------------------------- 68 (286)
T 1q7f_A 28 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGE------------------------------------- 68 (286)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECC-------------------------------------
T ss_pred ccCCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecc-------------------------------------
Confidence 44567778887 788888888889999999986 332221100
Q ss_pred EEEcCCCCEEEeeeccceEEEEEEe-cCCCCCccceeccCCceEEEEEcC-CCcEEEEEcCCCceeEEEee-cCCCCEEE
Q 047837 449 MAVSSRGSTLLLDAHDAEILSLSFS-LSSKKDDVLEEVTDSHYFLASGGR-DRTIHLYDVKRNFDLIESID-DHSAAVTA 525 (882)
Q Consensus 449 ~~~s~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~-dg~v~iwd~~~~~~~~~~~~-~h~~~v~~ 525 (882)
.+. ...+...+..+++. +++. ++++... ++.|.+||. ++ ..+..+. .+...+..
T Consensus 69 -----~~~---~~~~~~~p~~i~~~~~~g~-------------l~v~~~~~~~~i~~~d~-~g-~~~~~~~~~~~~~~~~ 125 (286)
T 1q7f_A 69 -----CGK---RDSQLLYPNRVAVVRNSGD-------------IIVTERSPTHQIQIYNQ-YG-QFVRKFGATILQHPRG 125 (286)
T ss_dssp -----BSS---STTCBSSEEEEEEETTTTE-------------EEEEECGGGCEEEEECT-TS-CEEEEECTTTCSCEEE
T ss_pred -----cCC---CcccccCceEEEEEcCCCe-------------EEEEcCCCCCEEEEECC-CC-cEEEEecCccCCCceE
Confidence 000 01233455666663 4443 5555533 789999994 44 4444443 34467899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEE
Q 047837 526 VKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRS 605 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 605 (882)
++++++|+++++...++.|.+||.. +.....+.. ..+...+..++++++|+++++...++.|++||. +++.+..
T Consensus 126 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 199 (286)
T 1q7f_A 126 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC----SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQ 199 (286)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC----TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC----CCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEE
Confidence 9999999988888888999999965 322222211 122246889999999998888788999999997 4667777
Q ss_pred EEeccCCCCcEEEEECCCCCEEEEEeCCC-cEEEEEccCCeEEEEEccCCC--CeEEEEECCCCCEEEEEeCCCeEEEEe
Q 047837 606 FKQAKDFGDPMKVTVDPSGSYLVCSYSNK-SICLYDFISGEMVAKAMGHGE--VITGVTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 606 ~~~~~~~~~v~~~~~spdg~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
+...++...+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++|+|+|+++++ +.|+.|++|+
T Consensus 200 ~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 200 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 65333346789999999999999888776 9999995 5777777765433 4789999999987776 6799999999
Q ss_pred CCCCC
Q 047837 683 KYGIL 687 (882)
Q Consensus 683 ~~~~~ 687 (882)
+....
T Consensus 278 ~~~~~ 282 (286)
T 1q7f_A 278 YVQLA 282 (286)
T ss_dssp CSCCC
T ss_pred ccccc
Confidence 86543
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=2.1e-13 Score=151.55 Aligned_cols=341 Identities=13% Similarity=0.073 Sum_probs=220.1
Q ss_pred EecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe-EEEE
Q 047837 249 LSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK-LVVV 327 (882)
Q Consensus 249 ~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-ll~~ 327 (882)
.++.+.++++...++.|.++|..+++.+.++.. ...+..+.|+|||+ ++++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~----------------------------g~~p~~v~~SpDGr~lyv~ 214 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT----------------------------GYAVHISRLSASGRYLFVI 214 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEEC----------------------------SSCEEEEEECTTSCEEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeC----------------------------CCCccceEECCCCCEEEEE
Confidence 345556677777889999999999888776641 11234789999997 4556
Q ss_pred eCCceEEEEEcc--cccccceeeeeecCcceeeeecccCCCCCCCCCcceeeecc---CCCcEEEEee-CCCcEEEEecC
Q 047837 328 YGDHSLYVWDIH--DVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGC---TGGVSFSTCS-ADGTIRLWDLA 401 (882)
Q Consensus 328 ~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~---~~~~~l~t~~-~dg~i~vwd~~ 401 (882)
+.++.|.+||+. +.+... .+.. ......++|++ ++|++++++. .++++.++|..
T Consensus 215 ~~dg~V~viD~~~~t~~~v~---~i~~-----------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 215 GRDGKVNMIDLWMKEPTTVA---EIKI-----------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp ETTSEEEEEETTSSSCCEEE---EEEC-----------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred cCCCeEEEEECCCCCCcEeE---EEec-----------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 779999999995 433221 1111 12234677774 5888777665 46999999998
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccc-eEEEEEEecCCCCCc
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDA-EILSLSFSLSSKKDD 480 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 480 (882)
+.+.+........ ..++. ..|.. .+..+..++++.
T Consensus 275 t~~~~~~i~~~~~-------------------------------------~~~~~----~~~p~~rva~i~~s~~~~--- 310 (567)
T 1qks_A 275 TLEPKKIQSTRGM-------------------------------------TYDEQ----EYHPEPRVAAILASHYRP--- 310 (567)
T ss_dssp TCCEEEEEECCEE-------------------------------------CTTTC----CEESCCCEEEEEECSSSS---
T ss_pred CCcEEEEEecccc-------------------------------------ccccc----cccCCCceEEEEEcCCCC---
Confidence 8776543211100 00000 00111 344455555433
Q ss_pred cceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEe-CCCeEEEEeCccCccceeee
Q 047837 481 VLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCS-ADRSLVVRDVVETNSAYKIS 559 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~ 559 (882)
.+++....+|.|.++|...................++.|+|++++++++. .++.|.++|+.+++....+.
T Consensus 311 ---------~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 311 ---------EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp ---------EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ---------EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 25666678899999998764222222223445677899999999987655 57889999999776444432
Q ss_pred ccceecccCCceEEEEEecCCCEE-EEEe-CCCcEEEEEccC-------CceEEEEEeccCCCCcEEEEECCCCCEEEEE
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVV-ITVG-QDKKINSFSIAA-------GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS 630 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l-~~~~-~d~~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 630 (882)
.. ....|.+.-..+ ++|++..+ ++.. .++.|.++|..+ .+.++++. .....-..+..+|++++|.+.
T Consensus 382 vg-g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~--~~g~g~~~i~~~p~~~~l~v~ 457 (567)
T 1qks_A 382 TG-GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP--ALGGGSLFIKTHPNSQYLYVD 457 (567)
T ss_dssp CS-SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--CSCSCCCCEECCTTCSEEEEE
T ss_pred cc-CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe--cCCCCCEEEEeCCCCCeEEEe
Confidence 20 112332222222 68875544 4443 468999999988 67888887 333444568899999999887
Q ss_pred eC-------CCcEEEEEccCC-----e-EEEEEc--------cCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEeCC
Q 047837 631 YS-------NKSICLYDFISG-----E-MVAKAM--------GHGEVITGVTFLPDCKHIVSVG-----GDGLQRVKEKY 684 (882)
Q Consensus 631 ~~-------dg~i~iwd~~~~-----~-~~~~~~--------~h~~~v~~l~~s~d~~~l~s~~-----~dg~i~vwd~~ 684 (882)
.. .++|.++|+.+. . .+..+. .....+..+.|+++|++|..+. .++.|.|+|..
T Consensus 458 ~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 458 ATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp CTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred cCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence 63 359999999877 2 123332 1235788999999999877663 37999999999
Q ss_pred CCCCCcccCC
Q 047837 685 GILPPRNFAQ 694 (882)
Q Consensus 685 ~~~~~~~~~~ 694 (882)
+.+....+..
T Consensus 538 t~~~~~~i~~ 547 (567)
T 1qks_A 538 TLELKHVIKD 547 (567)
T ss_dssp TTEEEEEECC
T ss_pred CceEEEEeCC
Confidence 8876665543
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=1.8e-14 Score=167.52 Aligned_cols=252 Identities=14% Similarity=0.058 Sum_probs=161.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecccccee---------EEEEC--CCCCE-EEE
Q 047837 38 MVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVE---------CIAFS--PDGEH-LVT 105 (882)
Q Consensus 38 l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~---------~lafs--pdg~~-Las 105 (882)
+.+|. ..+..+++++++.+++....+.++...||....+.....+..|...+. ..+|+ |||++ |+.
T Consensus 19 ~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 19 VASRS--GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHTC--SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HhhcC--CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 44676 789999999887666666334477899999665556677877777766 66665 99999 887
Q ss_pred Ec---CEEEEEEcC--c-ceeeeeeecCC---cccceeEEEEccCCCEEEEECC-----------CcEEEEEccc-----
Q 047837 106 VG---GYIYLWNWR--S-AMLVMKLKANS---SCSAITSACFSSDAKFIVTAGK-----------KHLKFWTIGS----- 160 (882)
Q Consensus 106 ~~---~~i~iWd~~--~-g~~~~~~~~~~---~~~~v~~l~fs~d~~~l~~~~~-----------~~i~iwd~~~----- 160 (882)
++ ..|.+|++. + ++ ...+.... +...+..++|+|||+.|++++. ..|.+|++.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 76 567777765 2 43 44454421 2267899999999999988764 2688899876
Q ss_pred -CccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEe
Q 047837 161 -SATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSV 239 (882)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~ 239 (882)
+.. ..+.. .+.
T Consensus 176 ~~~~--~~l~~------~~~------------------------------------------------------------ 187 (662)
T 3azo_A 176 RSAV--RELSD------DAH------------------------------------------------------------ 187 (662)
T ss_dssp GGGS--EESSC------SCS------------------------------------------------------------
T ss_pred CCce--eEEEe------cCC------------------------------------------------------------
Confidence 332 11100 000
Q ss_pred eceeeeeEEEecCCCEEEEEecC--------CeEEeeecc-cce--ecccccccCcccCCCCCccccchhhhccccccCC
Q 047837 240 DLKVKNGFALSASSKLIACACSN--------GAVHLFDIQ-SLK--HAGTLHYSEAKKCNGENDTVSTAKATELYFKLTP 308 (882)
Q Consensus 240 ~~~~~~~~~~s~d~~~l~~~~~d--------g~I~vwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (882)
..+..++|+|||++|+.++.+ ..|.+||+. +++ ....+. . .
T Consensus 188 --~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------~-------------------~ 239 (662)
T 3azo_A 188 --RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-------G-------------------G 239 (662)
T ss_dssp --SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-------E-------------------E
T ss_pred --CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-------C-------------------C
Confidence 111568899999999988755 379999998 451 221211 0 1
Q ss_pred CCCCcEEEeecCCCeEEEEeC-Cc--eEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcE
Q 047837 309 TIPNAIACQFSTSEKLVVVYG-DH--SLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVS 385 (882)
Q Consensus 309 ~~~~~~~~~~s~~~~ll~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~ 385 (882)
+...+..++|+|||+++..+. ++ .|++||+.+++.. .+..+...+....| ...+..++|+ +++.+
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~----~l~~~~~~~~~p~w-------~~~~~~~~~~-~~~~~ 307 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT----QLCRREEEFAGPLW-------TPGMRWFAPL-ANGLI 307 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE----ESSCCSSBSSCCCC-------STTCCSEEEC-TTSCE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee----ecccccccccCccc-------cccCceEeEe-CCCEE
Confidence 123455789999999666554 66 6666766544321 12222221111111 2225567887 78889
Q ss_pred EEEeeCCCcEEEEecC
Q 047837 386 FSTCSADGTIRLWDLA 401 (882)
Q Consensus 386 l~t~~~dg~i~vwd~~ 401 (882)
++++.. +.+++|.+.
T Consensus 308 ~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 308 AVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEBS-SSCEEEEEE
T ss_pred EEEEEc-CccEEEEEE
Confidence 999988 999999543
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=1.9e-14 Score=167.31 Aligned_cols=337 Identities=9% Similarity=-0.004 Sum_probs=190.3
Q ss_pred eeeeEEEecCCCEEEEE--ecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee--
Q 047837 243 VKNGFALSASSKLIACA--CSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF-- 318 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~--~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 318 (882)
.+..++|++++-+++.. ..++...||....+.....+. .+...+... ....... ...|
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--------~~~~~~~~~--------~~~~~~~--~~~~~~ 86 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL--------PAPWNVRNR--------VFEYSGF--PWAGVP 86 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS--------CTTCCBCCC--------GGGTCCC--CEEEEC
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC--------CCCcccccc--------ccccCCc--cceeee
Confidence 34778899876666666 557889999864433222221 111110000 0000000 2334
Q ss_pred cCCCeE-EEEeC--CceEEEEEcc--c-ccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCC
Q 047837 319 STSEKL-VVVYG--DHSLYVWDIH--D-VNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSAD 392 (882)
Q Consensus 319 s~~~~l-l~~~~--d~~i~iwd~~--~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~d 392 (882)
||||+. |+... +..|++|++. . ++. . .+.... ...|...+..++|+ +||+.|+.++.|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~---~l~~~~-----------~~~~~~~~~~~~~s-pDg~~l~~~~~~ 150 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-R---PLTPVS-----------AVGGGLRWADPVLL-PERGEVWCMAEE 150 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-E---ECSCCC-----------CSTTCEEEEEEEEE-TTTTEEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-E---eccCCc-----------cCCCCccccCcEEC-CCCCEEEEEEec
Confidence 499976 66555 4566666654 2 221 1 121100 00134556778888 899999988876
Q ss_pred ----------CcEEEEecCC------CceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCC
Q 047837 393 ----------GTIRLWDLAL------QSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGS 456 (882)
Q Consensus 393 ----------g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 456 (882)
..|.+||+.+ +... .
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~------------------------------------------------ 181 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAVR-E------------------------------------------------ 181 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGSE-E------------------------------------------------
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCcee-E------------------------------------------------
Confidence 5799999876 3321 1
Q ss_pred EEEee-eccceEEEEEEecCCCCCccceeccCCceEEEEEcCC--------CcEEEEEcCC-C--ceeEEEeecCCCCEE
Q 047837 457 TLLLD-AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD--------RTIHLYDVKR-N--FDLIESIDDHSAAVT 524 (882)
Q Consensus 457 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--------g~v~iwd~~~-~--~~~~~~~~~h~~~v~ 524 (882)
+. .+...+..++|+|+++ +|+.++.+ ..|++||+.. + ........+|...+.
T Consensus 182 ---l~~~~~~~~~~~~~SpDG~-------------~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 182 ---LSDDAHRFVTGPRLSPDGR-------------QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ---SSCSCSSEECCCEECTTSS-------------EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ---EEecCCCcccCceECCCCC-------------EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 11 2223455566777766 67665543 4799999983 4 133444455678899
Q ss_pred EEEEccCCCEEEEEeCCC--eEEEEeCccCccceeeeccceeccc---CCceEEEEEecCCCEEEEEeCCCcEEEE--Ec
Q 047837 525 AVKFTCNGRKILSCSADR--SLVVRDVVETNSAYKISRRHQQLAS---QGTVYDMDIDPTMEVVITVGQDKKINSF--SI 597 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iw--d~ 597 (882)
.++|+|||++++++..++ .|.+||+.+++ ...+...+..... .-.+..++|+|++++++++.. +.+++| |+
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ 323 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP 323 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence 999999999888888888 56666654433 2222221111000 001567899999999999998 999999 55
Q ss_pred cCCceEEEEEeccCCCCcEEE-EECCCCCEEEEEeCCC--cEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 598 AAGKLIRSFKQAKDFGDPMKV-TVDPSGSYLVCSYSNK--SICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 598 ~~~~~~~~~~~~~~~~~v~~~-~~spdg~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
.+++ +..+. .+...+..+ +++++.-++++++.+. .|++||+.+++.......|...+....+.+...+.+....
T Consensus 324 ~~~~-~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 400 (662)
T 3azo_A 324 ESGE-LVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPD 400 (662)
T ss_dssp TTTE-EEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTT
T ss_pred CCCc-EEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCC
Confidence 5554 56665 556666666 4443333344445554 5666677788765544445444444344444334443333
Q ss_pred CCeEEEEeC
Q 047837 675 DGLQRVKEK 683 (882)
Q Consensus 675 dg~i~vwd~ 683 (882)
+..|..|-.
T Consensus 401 g~~i~~~~~ 409 (662)
T 3azo_A 401 GREIHAHIY 409 (662)
T ss_dssp SCEEEEEEE
T ss_pred CCEEEEEEE
Confidence 335655543
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=3.1e-13 Score=138.66 Aligned_cols=247 Identities=11% Similarity=0.137 Sum_probs=168.2
Q ss_pred CCcEEEeecCCCeEEEEe-CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe
Q 047837 311 PNAIACQFSTSEKLVVVY-GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC 389 (882)
Q Consensus 311 ~~~~~~~~s~~~~ll~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~ 389 (882)
..+.+++++++++++++. .++.|++||.+.. .. ..+.. ......|...+.++++.++++.++++.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~---~~~~~----------~~~~~~~~~~p~~i~~~~~~g~l~v~~ 95 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FK---FQFGE----------CGKRDSQLLYPNRVAVVRNSGDIIVTE 95 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EE---EEECC----------BSSSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCc-EE---EEecc----------cCCCcccccCceEEEEEcCCCeEEEEc
Confidence 345689999999977775 5889999997632 11 11111 001123445677888843677777766
Q ss_pred eC-CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 390 SA-DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 390 ~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
.. ++.|.+||. +++.+.... ..+...+.
T Consensus 96 ~~~~~~i~~~d~-~g~~~~~~~--------------------------------------------------~~~~~~~~ 124 (286)
T 1q7f_A 96 RSPTHQIQIYNQ-YGQFVRKFG--------------------------------------------------ATILQHPR 124 (286)
T ss_dssp CGGGCEEEEECT-TSCEEEEEC--------------------------------------------------TTTCSCEE
T ss_pred CCCCCEEEEECC-CCcEEEEec--------------------------------------------------CccCCCce
Confidence 43 789999994 343322110 01223456
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee--cCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID--DHSAAVTAVKFTCNGRKILSCSADRSLVV 546 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~i~v 546 (882)
.+++++++. ++++...++.|.+||... ..+..+. .+...+..++++++|+++++...++.|++
T Consensus 125 ~i~~~~~g~-------------l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 189 (286)
T 1q7f_A 125 GVTVDNKGR-------------IIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV 189 (286)
T ss_dssp EEEECTTSC-------------EEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred EEEEeCCCC-------------EEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEE
Confidence 677777766 777777788999999653 3444443 45567899999999998888888899999
Q ss_pred EeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC-cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCC
Q 047837 547 RDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK-KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625 (882)
Q Consensus 547 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 625 (882)
||.. +.....+.. ..+...+..++++++|+++++...++ .|.+||. +++.+..+........+..++++|+|+
T Consensus 190 ~~~~-g~~~~~~~~----~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 190 FNYE-GQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp EETT-CCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred EcCC-CCEEEEEcc----CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCc
Confidence 9975 322222211 11124688999999999888888776 9999995 577777776433344578999999998
Q ss_pred EEEEEeCCCcEEEEEccCC
Q 047837 626 YLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 626 ~l~~~~~dg~i~iwd~~~~ 644 (882)
++++ +.++.|++|++...
T Consensus 264 l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 264 VVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEE-ETTTEEEEEECSCC
T ss_pred EEEE-CCCCeEEEEEcccc
Confidence 7777 57899999998654
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.60 E-value=5.5e-10 Score=132.06 Aligned_cols=532 Identities=8% Similarity=0.038 Sum_probs=304.7
Q ss_pred CCCCeEEEeeceEEEEEECCCCceEEEEEecCCCC---CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecc
Q 047837 11 DSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPK---PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGH 87 (882)
Q Consensus 11 d~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~---~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h 87 (882)
|..+.+-....+-+..||.++.+.... ..... . .|.+++..++|++.+.. ..-|.+||..+++......++
T Consensus 96 d~~g~lWigT~~Gl~~yd~~~~~f~~~-~~~~~-~~~~~i~~i~~d~~g~lwi~t----~~gl~~~~~~~~~~~~~~~~~ 169 (795)
T 4a2l_A 96 DSQGRVWIGTRDGLSRYDEEKDIFQNF-FYEKN-GKHLQVNGIEEISPEQLLIST----PEGLIMFDIKESKFIDDSFST 169 (795)
T ss_dssp CTTSCEEEEESSCEEEEETTTTEEEEE-CCEET-TEECCCCEEEEEETTEEEEEE----TTEEEEEETTTTEEECSSSCH
T ss_pred CCCCCEEEEeCCchheeCCCCCeEEec-ccccc-CCCceEEEEEECCCCCEEEEE----CCceEEEECCCCEEEeccCCC
Confidence 434455555556689999887765433 22211 1 18899999999766554 235999998877653322221
Q ss_pred -ccc-eeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccc
Q 047837 88 -LYG-VECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATA 164 (882)
Q Consensus 88 -~~~-V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~ 164 (882)
... |.++...++|++.+... +.|..||..+++........ ....|.++...+++.+.+....+.+..|+..+++..
T Consensus 170 ~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~-~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~ 248 (795)
T 4a2l_A 170 AMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPIL-GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK 248 (795)
T ss_dssp HHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE
T ss_pred CCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCC-CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE
Confidence 123 88999998998877665 57999998877654332111 126789999989888887765556888998765441
Q ss_pred eeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeE------
Q 047837 165 RTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKS------ 238 (882)
Q Consensus 165 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~------ 238 (882)
...... ..+..+ ....+.++ .......+|.++..| ++.++........
T Consensus 249 ~~~~~~--------~~~~~l---~~~~i~~i--------------~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~ 302 (795)
T 4a2l_A 249 NYLHSP--------SNPKSI---SSNYIRSL--------------AMDSQNRLWIGTFND-LNIYHEGTDSFASYSSNPV 302 (795)
T ss_dssp EECCCT--------TCTTSC---SCSBEEEE--------------EECTTSCEEEEESSC-EEEEETTTTEEEEECCCTT
T ss_pred EeecCC--------CCcccc---CCCeEEEE--------------EEcCCCCEEEEeCCh-hheEcCCCCeEEEEecCCC
Confidence 111000 000000 00001110 111223366666664 4445433221111
Q ss_pred ----eeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcE
Q 047837 239 ----VDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAI 314 (882)
Q Consensus 239 ----~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (882)
.....+.++...++|. |-+|+.++-|..|+..+..... +.... . .. .-....+.
T Consensus 303 ~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~-----~-~~--------------~l~~~~V~ 360 (795)
T 4a2l_A 303 ENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIP-----Y-KN--------------SLSDNVVS 360 (795)
T ss_dssp STTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCT-----T-SS--------------SCSCSSEE
T ss_pred CCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCC-----C-CC--------------CCCCCeeE
Confidence 1224578888888887 5667777788888876543211 10000 0 00 01223467
Q ss_pred EEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCc
Q 047837 315 ACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGT 394 (882)
Q Consensus 315 ~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~ 394 (882)
++...++|.+-+++.++.|..|+..++... .+......-. .......|.+++.. .++..|..|+.++-
T Consensus 361 ~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~----~~~~~~~~~~-------~~l~~~~v~~i~~d-~~g~~lWigt~~~G 428 (795)
T 4a2l_A 361 CIVEDKDKNLWIGTNDGGLNLYNPITQRFT----SYTLQEDESA-------RGIGSNNIKAVYVD-EKKSLVYIGTHAGG 428 (795)
T ss_dssp EEEECTTSCEEEEESSSCEEEECTTTCCEE----EECCC-------------CCSCSCEEEEEEE-TTTTEEEEEETTTE
T ss_pred EEEECCCCCEEEEECCCCeEEEcCCCCcEE----EEecCCCCcc-------cCCCCccEEEEEEc-CCCCEEEEEeCcCc
Confidence 888889999999999888999998754321 1110000000 00123456777765 56764666777778
Q ss_pred EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEec
Q 047837 395 IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSL 474 (882)
Q Consensus 395 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~ 474 (882)
|..||..+++...-. .. +.. .....|.++...+
T Consensus 429 l~~~d~~~~~~~~~~-~~-----------------------------------------~~~-----l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 429 LSILHRNSGQVENFN-QR-----------------------------------------NSQ-----LVNENVYAILPDG 461 (795)
T ss_dssp EEEEETTTCCEEEEC-TT-----------------------------------------TSC-----CSCSCEEEEEECS
T ss_pred eeEEeCCCCcEEEee-cC-----------------------------------------CCC-----cCCCeeEEEEECC
Confidence 999998765432110 00 000 1223456666655
Q ss_pred CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee------cCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 475 SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID------DHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
++. |..|+.+ -+.+||..++ ....... -....|.++...++|+..+... +| +..||
T Consensus 462 ~g~--------------lwigt~~-Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~ 523 (795)
T 4a2l_A 462 EGN--------------LWLGTLS-ALVRFNPEQR-SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFK 523 (795)
T ss_dssp SSC--------------EEEEESS-CEEEEETTTT-EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEE
T ss_pred CCC--------------EEEEecC-ceeEEeCCCC-eEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEe
Confidence 554 4444444 4888998764 2222111 1236799999999998777554 45 88888
Q ss_pred CccCccceeeecc-ceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe-cc-CCCCcEEEEECCCCC
Q 047837 549 VVETNSAYKISRR-HQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ-AK-DFGDPMKVTVDPSGS 625 (882)
Q Consensus 549 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~spdg~ 625 (882)
..+... ..... .........|.++...++|.+.+... . -|..||..+++.. .+.. .+ ....|.++...++|+
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~ 598 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGR 598 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSC
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCC
Confidence 775432 22110 11112335789999999998766543 3 6888998766543 3321 11 234688899999998
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEEEccCC----CCe--EEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 626 YLVCSYSNKSICLYDFISGEMVAKAMGHG----EVI--TGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 626 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~v--~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
+.+++ ++-|..||..+++. ..+.... ..+ .++...++|++++ ++.+|.+ .++..
T Consensus 599 lWi~t--~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~-~~~p~ 658 (795)
T 4a2l_A 599 LWLST--NRGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQMYF-GGINGIT-TFRPE 658 (795)
T ss_dssp EEEEE--TTEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEEE-EECGG
T ss_pred EEEEc--CCceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCeEEE-ecCCceE-EEcHH
Confidence 87766 34588899887764 3443222 222 4677788887666 6666754 45543
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=6.7e-13 Score=140.58 Aligned_cols=124 Identities=16% Similarity=0.297 Sum_probs=94.1
Q ss_pred CCCCeEEEee----------ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC---CCCeEEEEECCC
Q 047837 11 DSSSKCAYVA----------GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG---PQPAVLVWDCAN 77 (882)
Q Consensus 11 d~~~~~~~~~----------~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~---~d~~I~vwd~~t 77 (882)
||. .++|.. ...|.+||+++++...+ ..+..++|||||++||++... +...|.+||+.+
T Consensus 23 dG~-~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~ 94 (347)
T 2gop_A 23 KGE-LVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET 94 (347)
T ss_dssp ETT-EEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT
T ss_pred CCc-EEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC
Confidence 665 677753 45799999998876443 248899999999999988642 123588899998
Q ss_pred ceeeEEeeccccceeEEEECCCCCEEEEEc-----------------------------CEEEEEEcCcceeeeeeecCC
Q 047837 78 LAFISELKGHLYGVECIAFSPDGEHLVTVG-----------------------------GYIYLWNWRSAMLVMKLKANS 128 (882)
Q Consensus 78 ~~~~~~l~~h~~~V~~lafspdg~~Las~~-----------------------------~~i~iWd~~~g~~~~~~~~~~ 128 (882)
++.......+ . +..++|+|||++|+.++ ..|++||+.+++.+..+.. .
T Consensus 95 g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~ 171 (347)
T 2gop_A 95 LSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P 171 (347)
T ss_dssp TEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E
T ss_pred CceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C
Confidence 8876555433 4 99999999999988764 4699999999887555554 1
Q ss_pred cccceeEEEEccCCCEEEEEC
Q 047837 129 SCSAITSACFSSDAKFIVTAG 149 (882)
Q Consensus 129 ~~~~v~~l~fs~d~~~l~~~~ 149 (882)
.+..++|+||| +++++.
T Consensus 172 ---~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 172 ---RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp ---TTCEEEEETTE-EEEEEE
T ss_pred ---CcccccCCCCe-EEEEEe
Confidence 67899999999 766663
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=4.9e-13 Score=137.96 Aligned_cols=232 Identities=10% Similarity=0.051 Sum_probs=162.7
Q ss_pred CCcceeeeccCCCc-EEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEE
Q 047837 371 PSVSCVARGCTGGV-SFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSM 449 (882)
Q Consensus 371 ~~v~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (882)
....+++|+ ++++ +++++..++.|..|+..++ ...
T Consensus 28 ~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~--~~~----------------------------------------- 63 (296)
T 3e5z_A 28 TWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQ--LSP----------------------------------------- 63 (296)
T ss_dssp SSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSC--EEE-----------------------------------------
T ss_pred ccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCC--eEE-----------------------------------------
Confidence 345678888 6776 7888888999999998865 211
Q ss_pred EEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec----CCCCEEE
Q 047837 450 AVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD----HSAAVTA 525 (882)
Q Consensus 450 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~----h~~~v~~ 525 (882)
+..+...+..+++++++. ++++...++.|.+||..++ +....... ....+..
T Consensus 64 ----------~~~~~~~~~~l~~~~dg~-------------l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~ 119 (296)
T 3e5z_A 64 ----------EMHPSHHQNGHCLNKQGH-------------LIACSHGLRRLERQREPGG-EWESIADSFEGKKLNSPND 119 (296)
T ss_dssp ----------EESSCSSEEEEEECTTCC-------------EEEEETTTTEEEEECSTTC-CEEEEECEETTEECCCCCC
T ss_pred ----------EECCCCCcceeeECCCCc-------------EEEEecCCCeEEEEcCCCC-cEEEEeeccCCCCCCCCCC
Confidence 112344567777877776 6777777789999998665 32222221 1234678
Q ss_pred EEEccCCCEEEEEeC-----------------CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC
Q 047837 526 VKFTCNGRKILSCSA-----------------DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ 588 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 588 (882)
++++|+|+++++.+. .+.|..++.. .....+. .+......++|+|+++.+++.+.
T Consensus 120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~------~~~~~~~gi~~s~dg~~lv~~~~ 191 (296)
T 3e5z_A 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPI------RDRVKPNGLAFLPSGNLLVSDTG 191 (296)
T ss_dssp EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEE------CCCSSEEEEEECTTSCEEEEETT
T ss_pred EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEee------cCCCCCccEEECCCCCEEEEeCC
Confidence 999999998887321 2345555544 2222221 12246789999999998877777
Q ss_pred CCcEEEEEcc-CCce---EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEE-C
Q 047837 589 DKKINSFSIA-AGKL---IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTF-L 663 (882)
Q Consensus 589 d~~v~iwd~~-~~~~---~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-s 663 (882)
++.|.+||+. +++. ...+ ..+...+..++++++|+++++. ++.|.+||.. ++.+..+..+.. +++++| +
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~ 265 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGG 265 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEES
T ss_pred CCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEEC
Confidence 8999999997 5655 3333 2456677889999999977776 7889999986 888888887777 999999 6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCC
Q 047837 664 PDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 664 ~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
|+++.|++++.++.. -++..+
T Consensus 266 ~d~~~L~v~t~~~l~-~~~~~~ 286 (296)
T 3e5z_A 266 PEGRTLYMTVSTEFW-SIETNV 286 (296)
T ss_dssp TTSCEEEEEETTEEE-EEECSC
T ss_pred CCCCEEEEEcCCeEE-EEEccc
Confidence 899999988877533 344443
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=5.2e-13 Score=141.46 Aligned_cols=162 Identities=12% Similarity=0.123 Sum_probs=110.6
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCC-------eEEEEeCccCccceeeeccceecccCCce
Q 047837 499 RTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR-------SLVVRDVVETNSAYKISRRHQQLASQGTV 571 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 571 (882)
..|++||+.++ +.+..+.. . .+..++|+||| +++++..++ ...+|.+. ......+... ..+
T Consensus 152 ~~l~~~d~~~~-~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-------~~~ 219 (347)
T 2gop_A 152 TTFWIFDTESE-EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-------VSF 219 (347)
T ss_dssp EEEEEEETTTT-EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-------ESE
T ss_pred ceEEEEECCCC-eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-------cce
Confidence 56899999876 44233443 3 78899999999 777775542 34555554 3333222211 234
Q ss_pred EEEEEecCCCEEEEEeCC--------CcEEEEEccCCceEEEEEeccCCCCcEE-EEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 572 YDMDIDPTMEVVITVGQD--------KKINSFSIAAGKLIRSFKQAKDFGDPMK-VTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 572 ~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
..+ +|||++|+.++.+ ..|.+|| +++...... .+...+.. +.|+ |+ ++++++.++.++|| +.
T Consensus 220 ~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 220 YAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred eeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 444 9999988877754 3688888 555433332 45567776 8999 98 88999999999999 88
Q ss_pred CCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeE-EEEeCC
Q 047837 643 SGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQ-RVKEKY 684 (882)
Q Consensus 643 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i-~vwd~~ 684 (882)
+++....+ .+...|.+++|+| .++++++.++.. ++|.+.
T Consensus 291 ~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 291 DGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 77664444 4578899999999 688888777764 777765
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=2.3e-11 Score=125.59 Aligned_cols=279 Identities=8% Similarity=0.003 Sum_probs=188.5
Q ss_pred CCcEEEeecCCCeEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe
Q 047837 311 PNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC 389 (882)
Q Consensus 311 ~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~ 389 (882)
..+.++++.++|++.++.. ++.|.+||.. +... .+.. ..+...+.++++. +++.++++.
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~----~~~~--------------~~~~~~~~~i~~~-~~g~l~v~~ 74 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKIT----EYPL--------------PTPDAKVMCLTIS-SDGEVWFTE 74 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE----EEEC--------------SSTTCCEEEEEEC-TTSCEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE----EecC--------------CcccCceeeEEEC-CCCCEEEeC
Confidence 4566899999999888776 7899999986 3211 1110 0123456677777 688888877
Q ss_pred eCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEE
Q 047837 390 SADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILS 469 (882)
Q Consensus 390 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~ 469 (882)
..++.|..|+.. ++. .. +. .......+..
T Consensus 75 ~~~~~i~~~~~~-g~~-~~----------------------------------------~~---------~~~~~~~~~~ 103 (299)
T 2z2n_A 75 NAANKIGRITKK-GII-KE----------------------------------------YT---------LPNPDSAPYG 103 (299)
T ss_dssp TTTTEEEEECTT-SCE-EE----------------------------------------EE---------CSSTTCCEEE
T ss_pred CCCCeEEEECCC-CcE-EE----------------------------------------Ee---------CCCcCCCcee
Confidence 778889999875 221 10 00 0012234566
Q ss_pred EEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 047837 470 LSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDV 549 (882)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 549 (882)
+++.+++. ++++...++.|.+||. ++.........+...+..++++++|+.+++...++.|..||.
T Consensus 104 i~~~~~g~-------------l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 104 ITEGPNGD-------------IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEECTTSC-------------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEECCCCC-------------EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 66776665 6666667788999998 432222223334567899999999988888777888999998
Q ss_pred ccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEE
Q 047837 550 VETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
++.. ..... ......+..++++++++++++...++.|.+||. +++... +....+...+..++++++|+++++
T Consensus 170 -~g~~-~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 170 -SGDI-TEFKI----PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp -TCCE-EEEEC----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEE
T ss_pred -CCcE-EEeeC----CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEe
Confidence 4332 22211 112346889999999998777767889999999 666443 332245577899999999997777
Q ss_pred EeCCCcEEEEEccCCeEEEE-EccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 630 SYSNKSICLYDFISGEMVAK-AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
...++.|..||. +++.... +..+...+.++++ ++|+++++.. .+.+..++..+
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 767889999998 5654322 3345578999999 9998877665 45666666654
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=6.1e-13 Score=138.98 Aligned_cols=270 Identities=10% Similarity=0.038 Sum_probs=178.1
Q ss_pred CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeec
Q 047837 330 DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKD 409 (882)
Q Consensus 330 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~ 409 (882)
++.|.+||.++++..... +..... .........+++. +++++++...++.|.+||..+++.+.+.
T Consensus 16 ~~~l~~~d~~t~~~~~~i--~~~~n~-----------~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i 80 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEV--FYRANG-----------FKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI 80 (328)
T ss_dssp CBEEEEEETTTTEEECSH--HHHHHS-----------SCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCEEhhhh--HhhhcC-----------cccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc
Confidence 789999999876543211 000000 0001223445543 5667777777899999999988765431
Q ss_pred ccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCc
Q 047837 410 VLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSH 489 (882)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 489 (882)
. .......+++++++.
T Consensus 81 ~----------------------------------------------------~~~~p~~i~~~~~g~------------ 96 (328)
T 3dsm_A 81 T----------------------------------------------------GFTSPRYIHFLSDEK------------ 96 (328)
T ss_dssp E----------------------------------------------------CCSSEEEEEEEETTE------------
T ss_pred C----------------------------------------------------CCCCCcEEEEeCCCe------------
Confidence 0 112344555555543
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeEEEeecCC-----CCEEEEEEccCCCEEEEEe--CCCeEEEEeCccCccceeeeccc
Q 047837 490 YFLASGGRDRTIHLYDVKRNFDLIESIDDHS-----AAVTAVKFTCNGRKILSCS--ADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 490 ~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~-----~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
+.++...++.|.+||..++ +....+.... .....+++ ++..|..+. .++.|.++|+.+.+....+...
T Consensus 97 -lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 97 -AYVTQIWDYRIFIINPKTY-EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp -EEEEEBSCSEEEEEETTTT-EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred -EEEEECCCCeEEEEECCCC-eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence 4555547899999999886 5555554322 14556777 344555444 4889999999876654443221
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCC----------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQD----------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d----------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
.....++++|+|++++++..+ +.|.++|..+++....+.. .....+..++|+||+++|.++..
T Consensus 172 ------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 172 ------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS
T ss_pred ------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc
Confidence 245678999999977776654 7899999999998877752 12347899999999999988755
Q ss_pred CCcEEEEEccCCeEEEE--EccCCCCeEEEEECC-CCCEEEEE----eCCCeEEEEeCCCCCCCcccC
Q 047837 633 NKSICLYDFISGEMVAK--AMGHGEVITGVTFLP-DCKHIVSV----GGDGLQRVKEKYGILPPRNFA 693 (882)
Q Consensus 633 dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~-d~~~l~s~----~~dg~i~vwd~~~~~~~~~~~ 693 (882)
.|.+||..+++.... +..+......++++| +++++++. ..++.|.+||.. ++....+.
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 899999998876421 121246788999999 55666665 578899999987 55555443
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=9.2e-13 Score=138.58 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=155.4
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD 541 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 541 (882)
.+...+.+++|++++. +++++..++.|.+||..++ +.......+...+.+++++++|+++++...+
T Consensus 42 ~~~~~~~~~~~~~~g~-------------l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~ 107 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQ-------------LFLLDVFEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGD 107 (333)
T ss_dssp SSCCCEEEEEECTTSC-------------EEEEETTTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred ccCccccCcEECCCCC-------------EEEEECCCCEEEEEeCCCC-cEEEEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence 3444567778887776 7778888999999998875 3333333567789999999999988887766
Q ss_pred ----CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC------CCcEEEEEccCCceEEEEEeccC
Q 047837 542 ----RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ------DKKINSFSIAAGKLIRSFKQAKD 611 (882)
Q Consensus 542 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~ 611 (882)
+.|.+||..+......+.. ......+.+++++|+|+++++... .+.|..+|..+++...... .
T Consensus 108 ~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~ 180 (333)
T 2dg1_A 108 FKSTGGIFAATENGDNLQDIIED----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---N 180 (333)
T ss_dssp SSSCCEEEEECTTSCSCEEEECS----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---E
T ss_pred CCCCceEEEEeCCCCEEEEEEcc----CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---C
Confidence 6899999875543212111 112357899999999998887654 3556667766555443322 2
Q ss_pred CCCcEEEEECCCCCEEE-EEeCCCcEEEEEccC-CeEEEE--------EccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 612 FGDPMKVTVDPSGSYLV-CSYSNKSICLYDFIS-GEMVAK--------AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 612 ~~~v~~~~~spdg~~l~-~~~~dg~i~iwd~~~-~~~~~~--------~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
...+..++|+|||++|+ +...++.|++||+.+ ++.+.. +.++ ..+..++++++|+++++...++.|.+|
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 34578999999998665 445678999999963 432221 1222 467889999999988888888999999
Q ss_pred eCCCCCCCcccCCCC-------CcccEEEecCCCeE
Q 047837 682 EKYGILPPRNFAQPA-------ALSPIIFCEEEDQK 710 (882)
Q Consensus 682 d~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~ 710 (882)
|.. ......+..+. ....++|++++..+
T Consensus 260 d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L 294 (333)
T 2dg1_A 260 NKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL 294 (333)
T ss_dssp CTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred CCC-CCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence 985 33334443332 35677887665444
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=7.1e-13 Score=138.77 Aligned_cols=206 Identities=16% Similarity=0.180 Sum_probs=148.6
Q ss_pred CcEEEEEcCCCceeEEEee-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCc-cceeeeccce---ecccCCceEE
Q 047837 499 RTIHLYDVKRNFDLIESID-DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETN-SAYKISRRHQ---QLASQGTVYD 573 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~---~~~~~~~v~~ 573 (882)
+.|.+||..++ +.+..+. ++-.....++++++|+++++...++.|++||..... ....+..... ...+......
T Consensus 69 ~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 69 DTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred CcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 57999998776 4444443 455678999999999988888889999999986432 2222211000 0122346889
Q ss_pred EEEec-CCCEEEEEe-CCCcEEEEEccCCceEEEEEecc--------CCCCcEEEEECCC-CCEEEEEeCCCcEEEEEcc
Q 047837 574 MDIDP-TMEVVITVG-QDKKINSFSIAAGKLIRSFKQAK--------DFGDPMKVTVDPS-GSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 574 ~~~sp-~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~--------~~~~v~~~~~spd-g~~l~~~~~dg~i~iwd~~ 642 (882)
++++| ++.++++.+ .++.|++|| .+++.+..+...+ +...+..++++|+ +.++++...++.|++||..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99999 788888886 689999999 5688877774222 2234899999998 7777888889999999999
Q ss_pred CCeEEEEEc--cCCCCeEEEEECCCCCEEEEE-------eCCCeEEEEeCCCCCCCcccC----CCCCcccEEEecCC
Q 047837 643 SGEMVAKAM--GHGEVITGVTFLPDCKHIVSV-------GGDGLQRVKEKYGILPPRNFA----QPAALSPIIFCEEE 707 (882)
Q Consensus 643 ~~~~~~~~~--~h~~~v~~l~~s~d~~~l~s~-------~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~s~~~ 707 (882)
+|+.+..+. .+...+..++|+| +..+++. ..+..|++||..++.....+. .......++|++++
T Consensus 227 ~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 227 TKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp TCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred CCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 899988884 4667889999999 4333333 344589999998877666653 23334567777776
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=2.3e-12 Score=135.45 Aligned_cols=267 Identities=11% Similarity=0.130 Sum_probs=175.3
Q ss_pred cEEEeecCCCeEE-EEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC
Q 047837 313 AIACQFSTSEKLV-VVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA 391 (882)
Q Consensus 313 ~~~~~~s~~~~ll-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~ 391 (882)
+.++.|++++..+ ....++.++.|.-. ....+.. +...+.+++|+ +++++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~-~~g~l~~~~~~ 64 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTITAE------PWLEISK----------------KGLQLEGLNFD-RQGQLFLLDVF 64 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEECE------EEEEEES----------------SCCCEEEEEEC-TTSCEEEEETT
T ss_pred cceeeecCCccceeEEeecccCcccccc------eeEEEec----------------cCccccCcEEC-CCCCEEEEECC
Confidence 4467788887533 34567888888321 1112222 23345677777 78888888888
Q ss_pred CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEE
Q 047837 392 DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLS 471 (882)
Q Consensus 392 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~ 471 (882)
++.|.+||..+++.... ...+...+.+++
T Consensus 65 ~~~i~~~d~~~~~~~~~---------------------------------------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRP---------------------------------------------------FVSHKANPAAIK 93 (333)
T ss_dssp TCEEEEECTTTCCEEEE---------------------------------------------------EECSSSSEEEEE
T ss_pred CCEEEEEeCCCCcEEEE---------------------------------------------------eeCCCCCcceEE
Confidence 99999999886543210 112335577777
Q ss_pred EecCCCCCccceeccCCceEEEEEcCC----CcEEEEEcCCCceeEEEee--cCCCCEEEEEEccCCCEEEEEeC-----
Q 047837 472 FSLSSKKDDVLEEVTDSHYFLASGGRD----RTIHLYDVKRNFDLIESID--DHSAAVTAVKFTCNGRKILSCSA----- 540 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~g~~d----g~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~----- 540 (882)
+++++. ++++...+ +.|.+||..++ .....+. .+...+.+++++|+|+++++...
T Consensus 94 ~~~dg~-------------l~v~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 94 IHKDGR-------------LFVCYLGDFKSTGGIFAATENGD-NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp ECTTSC-------------EEEEECTTSSSCCEEEEECTTSC-SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred ECCCCc-------------EEEEeCCCCCCCceEEEEeCCCC-EEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 777776 66666555 68999998765 3322222 24467999999999988887654
Q ss_pred -CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEE-EeCCCcEEEEEccC-CceEEEE-----EeccCC
Q 047837 541 -DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVIT-VGQDKKINSFSIAA-GKLIRSF-----KQAKDF 612 (882)
Q Consensus 541 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~-~~~~~~~-----~~~~~~ 612 (882)
.+.|..+|...+. ...+... ...+..++|+|+++.|+. ...++.|.+||+.+ +..+..+ ......
T Consensus 160 ~~~~l~~~~~~~~~-~~~~~~~------~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 232 (333)
T 2dg1_A 160 PLGGVYYVSPDFRT-VTPIIQN------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH 232 (333)
T ss_dssp CCEEEEEECTTSCC-EEEEEEE------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred CCceEEEEeCCCCE-EEEeecC------CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC
Confidence 3456666654322 2222111 135788999999986654 45678999999964 4433221 100111
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCC------CeEEEEECCCCCEEEEEeCC
Q 047837 613 GDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGE------VITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 613 ~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~s~d~~~l~s~~~d 675 (882)
..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 46788999999999888888899999998 5777777654433 68999999998777766554
No 187
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.56 E-value=5.7e-09 Score=123.34 Aligned_cols=532 Identities=11% Similarity=0.053 Sum_probs=308.4
Q ss_pred cCCCCCeEEEeeceEEEEEECCCCceEEEEEecC------CCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE
Q 047837 9 KPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHR------MPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS 82 (882)
Q Consensus 9 ~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~------~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~ 82 (882)
.-|..+.+-+...+-+..||-. ....+..+. ....|.+|...++|.+-+.. . + -+..||..+++...
T Consensus 49 ~qD~~G~lWigT~~GL~ryDG~---~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT-~--~-Gl~~yd~~~~~f~~ 121 (795)
T 4a2l_A 49 DQDKRGNMWFATYDGVNKYDGY---AFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGT-R--D-GLSRYDEEKDIFQN 121 (795)
T ss_dssp EECTTSCEEEEETTEEEEECSS---CEEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEE-S--S-CEEEEETTTTEEEE
T ss_pred EEcCCCCEEEeecCcCcccCCC---ceEEEeCCCCCCCcccccceeEEEECCCCCEEEEe-C--C-chheeCCCCCeEEe
Confidence 3454556666666668888843 333332211 12569999999999765443 2 2 38999998776433
Q ss_pred Eeeccc-c---ceeEEEECCCCCEEEEEcCEEEEEEcCcceeeeeeecCCcccc-eeEEEEccCCCEEEEECCCcEEEEE
Q 047837 83 ELKGHL-Y---GVECIAFSPDGEHLVTVGGYIYLWNWRSAMLVMKLKANSSCSA-ITSACFSSDAKFIVTAGKKHLKFWT 157 (882)
Q Consensus 83 ~l~~h~-~---~V~~lafspdg~~Las~~~~i~iWd~~~g~~~~~~~~~~~~~~-v~~l~fs~d~~~l~~~~~~~i~iwd 157 (882)
+.... . .|.++...++|.+.+...+.|.+||..+++......... ... |.++...+++++.+....+.|..|+
T Consensus 122 -~~~~~~~~~~~i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~~~~-~~~~i~~i~~d~~g~lwigt~~~Gl~~~~ 199 (795)
T 4a2l_A 122 -FFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTA-MHKTIASTLYRQGDQIYIGTSTDGLYTYS 199 (795)
T ss_dssp -ECCEETTEECCCCEEEEEETTEEEEEETTEEEEEETTTTEEECSSSCHH-HHTCCEEEEEEETTEEEEEESSSCEEEEE
T ss_pred -ccccccCCCceEEEEEECCCCCEEEEECCceEEEECCCCEEEeccCCCC-CCcceEEEEECCCCCEEEEECCCCEEEEe
Confidence 32211 1 189999999998877766668999987765433211111 123 8899999999888766555688898
Q ss_pred cccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeee
Q 047837 158 IGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTK 237 (882)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~ 237 (882)
..++... ..... ..... +..+. ......+|.++..+-++.++.......
T Consensus 200 ~~~~~~~--~~~~~-----~~~~~----------i~~i~--------------~d~~g~lwigt~~~Gl~~~~~~~~~~~ 248 (795)
T 4a2l_A 200 ITQKTFE--KVIPI-----LGTKQ----------IQAIL--------------QQSPTRIWVATEGAGLFLINPKTKEIK 248 (795)
T ss_dssp TTTCCEE--ECC---------CCC----------EEEEE--------------EEETTEEEEEEBSSCEEEEETTTTEEE
T ss_pred CCCCeEE--EecCC-----CCCCe----------eEEEE--------------EcCCCCEEEEECCCCeEEEeCCCCeEE
Confidence 7765441 11000 00000 00000 011223666765544666654432211
Q ss_pred Ee----------eceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccC
Q 047837 238 SV----------DLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLT 307 (882)
Q Consensus 238 ~~----------~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (882)
.. ....+.++...++|.+. +|+.+ -|.+|+..+++...-.. .. ... ..
T Consensus 249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~-~~-----~~~--------------~~ 306 (795)
T 4a2l_A 249 NYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSS-NP-----VEN--------------GS 306 (795)
T ss_dssp EECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECC-CT-----TST--------------TS
T ss_pred EeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEec-CC-----CCC--------------CC
Confidence 11 12457888888888744 45555 58888877654321110 00 000 00
Q ss_pred CCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEE
Q 047837 308 PTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFS 387 (882)
Q Consensus 308 ~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~ 387 (882)
-....+.++...++|.+-+++.++.|..|+....... .+..... ........|.++... .++. |.
T Consensus 307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~----~~~~~~~---------~~~l~~~~V~~i~~d-~~g~-lW 371 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK----NIRNIPY---------KNSLSDNVVSCIVED-KDKN-LW 371 (795)
T ss_dssp CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE----EECCCTT---------SSSCSCSSEEEEEEC-TTSC-EE
T ss_pred CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce----EEcCCCC---------CCCCCCCeeEEEEEC-CCCC-EE
Confidence 1224577888899999999999888999987654321 1110000 001124557777766 5555 55
Q ss_pred EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceE
Q 047837 388 TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEI 467 (882)
Q Consensus 388 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v 467 (882)
.|+.++-|..|+..++....-.. . +... ........|
T Consensus 372 iGt~~~Gl~~~~~~~~~~~~~~~-~----------------------------------------~~~~--~~~l~~~~v 408 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFTSYTL-Q----------------------------------------EDES--ARGIGSNNI 408 (795)
T ss_dssp EEESSSCEEEECTTTCCEEEECC-C------------------------------------------------CCSCSCE
T ss_pred EEECCCCeEEEcCCCCcEEEEec-C----------------------------------------CCCc--ccCCCCccE
Confidence 57777789999987654221000 0 0000 000112456
Q ss_pred EEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-----cCCCCEEEEEEccCCCEEEEEeCCC
Q 047837 468 LSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-----DHSAAVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~dg 542 (882)
.++...+++. +|..|..++-+.+||..++ .. ..+. .....|.++...++|++++... +|
T Consensus 409 ~~i~~d~~g~-------------~lWigt~~~Gl~~~d~~~~-~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G 472 (795)
T 4a2l_A 409 KAVYVDEKKS-------------LVYIGTHAGGLSILHRNSG-QV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA 472 (795)
T ss_dssp EEEEEETTTT-------------EEEEEETTTEEEEEETTTC-CE-EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC
T ss_pred EEEEEcCCCC-------------EEEEEeCcCceeEEeCCCC-cE-EEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc
Confidence 6666665554 4777777777999998765 22 2222 1346799999988888666554 55
Q ss_pred eEEEEeCccCccceeeeccc-eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe-----ccCCCCcE
Q 047837 543 SLVVRDVVETNSAYKISRRH-QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ-----AKDFGDPM 616 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~~~~v~ 616 (882)
+.+||..++.. ....... ........|.++...++|.+.+... +-|..||..+++. .+.. ......|.
T Consensus 473 -l~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~ 546 (795)
T 4a2l_A 473 -LVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTN 546 (795)
T ss_dssp -EEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEE
T ss_pred -eeEEeCCCCeE-EEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeE
Confidence 88899875422 1111110 0011235789999999998766554 5688999887765 3320 12345788
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc--c-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 617 KVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAM--G-HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 617 ~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~--~-h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
++...++|++.++.. . -|..||..+++....-. + ....|.++...++|++.+++ . +-|..|+..+.
T Consensus 547 ~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~ 615 (795)
T 4a2l_A 547 CIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETE 615 (795)
T ss_dssp EEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTT
T ss_pred EEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCC
Confidence 999999998776554 3 58889988775443211 1 23568899999999877755 3 44566776543
No 188
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=6.8e-12 Score=130.08 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=90.3
Q ss_pred ccccCCCCCeEEEee-----ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec--------CCCCeEEE
Q 047837 6 NIKKPDSSSKCAYVA-----GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES--------GPQPAVLV 72 (882)
Q Consensus 6 ~~~~pd~~~~~~~~~-----~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~--------~~d~~I~v 72 (882)
.+..||+...++.-. ++.|.++|..+++.+..+..-. .+ . +++||||++|+++.. ..++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~--~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC--CC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 455688764444433 4689999999999998876544 44 4 999999999988752 12467999
Q ss_pred EECCCceeeEEeeccc-------cceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecC
Q 047837 73 WDCANLAFISELKGHL-------YGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKAN 127 (882)
Q Consensus 73 wd~~t~~~~~~l~~h~-------~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~ 127 (882)
||..+++.+.++.-.. ..-..++|+|||++|..+. +.|.|+|+.+++.+.++...
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence 9999999998875321 2456799999999887764 78999999999999888654
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=2.1e-12 Score=134.83 Aligned_cols=268 Identities=9% Similarity=0.071 Sum_probs=178.1
Q ss_pred eEEEEEECCCCceEEEEE----ecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEEC
Q 047837 22 CVLVVYDVDSSTQSHLMV----SHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFS 97 (882)
Q Consensus 22 ~~v~vwd~~~~~~~~~l~----~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafs 97 (882)
+.|.++|.++++....+. +.........+++.. +++.++.. .++.|.+||..+++.+.++. .......++|+
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~--~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVN--NSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEG--GGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEc--CCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 689999999998765431 111113467788753 33333432 36799999999999999886 34668899999
Q ss_pred CCCCEEEEE-c-CEEEEEEcCcceeeeeeecCCc---ccceeEEEEccCCCEEEEEC--CCcEEEEEcccCccceecccc
Q 047837 98 PDGEHLVTV-G-GYIYLWNWRSAMLVMKLKANSS---CSAITSACFSSDAKFIVTAG--KKHLKFWTIGSSATARTRLNK 170 (882)
Q Consensus 98 pdg~~Las~-~-~~i~iWd~~~g~~~~~~~~~~~---~~~v~~l~fs~d~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~ 170 (882)
++++..++. . +.|.+||..+++.+.++..... ......+++ .+++++++.. ++.|.++|..+++... .
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~--~-- 167 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD--E-- 167 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE--E--
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE--E--
Confidence 999766666 3 9999999999998888775420 015667777 4555555542 5789999998765411 0
Q ss_pred CccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEe
Q 047837 171 GTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALS 250 (882)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s 250 (882)
+... .....++++
T Consensus 168 ----i~~g---------------------------------------------------------------~~p~~i~~~ 180 (328)
T 3dsm_A 168 ----LTIG---------------------------------------------------------------IQPTSLVMD 180 (328)
T ss_dssp ----EECS---------------------------------------------------------------SCBCCCEEC
T ss_pred ----EEcC---------------------------------------------------------------CCccceEEc
Confidence 0000 001568889
Q ss_pred cCCCEEEEEecC----------CeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecC
Q 047837 251 ASSKLIACACSN----------GAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFST 320 (882)
Q Consensus 251 ~d~~~l~~~~~d----------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 320 (882)
|+|+++++...+ +.|.++|..+++....+... .......++|+|
T Consensus 181 ~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--------------------------~g~~p~~la~~~ 234 (328)
T 3dsm_A 181 KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--------------------------LGDWPSEVQLNG 234 (328)
T ss_dssp TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--------------------------TTCCCEEEEECT
T ss_pred CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--------------------------CCCCceeEEEec
Confidence 999877766554 78999999988766544311 112345899999
Q ss_pred CCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEe----eCCCcEE
Q 047837 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTC----SADGTIR 396 (882)
Q Consensus 321 ~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~----~~dg~i~ 396 (882)
+++.+..... .|.+||..+++..... .+. .......+++++|.++.++++. ..++.|.
T Consensus 235 d~~~lyv~~~-~v~~~d~~t~~~~~~~-~~~----------------~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 235 TRDTLYWINN-DIWRMPVEADRVPVRP-FLE----------------FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp TSCEEEEESS-SEEEEETTCSSCCSSC-SBC----------------CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred CCCEEEEEcc-EEEEEECCCCceeeee-eec----------------CCCCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence 8875554443 8999999776432100 000 0124567788884477777776 6789999
Q ss_pred EEecCCCceeeecc
Q 047837 397 LWDLALQSELSKDV 410 (882)
Q Consensus 397 vwd~~~~~~~~~~~ 410 (882)
+||.. ++.+.+..
T Consensus 297 v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 297 RYSPQ-GKLIDEFY 309 (328)
T ss_dssp EECTT-CCEEEEEE
T ss_pred EECCC-CCEEEEEE
Confidence 99998 77665543
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=6.9e-13 Score=134.77 Aligned_cols=241 Identities=10% Similarity=0.018 Sum_probs=165.4
Q ss_pred CcceeeeccCCCcEEE-EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEE
Q 047837 372 SVSCVARGCTGGVSFS-TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMA 450 (882)
Q Consensus 372 ~v~~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (882)
...+++++ +++++++ +...++.|.+|+..+......
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~------------------------------------------ 61 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------------------------------ 61 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EEC------------------------------------------
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceE------------------------------------------
Confidence 56677887 6788777 546788999998754332110
Q ss_pred EcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-cCCCCEEEEEEc
Q 047837 451 VSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-DHSAAVTAVKFT 529 (882)
Q Consensus 451 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s 529 (882)
...+...+..+++++++. ++++.. ++.|.+||.... .. ..+. .....+..++++
T Consensus 62 ---------~~~~~~~p~~i~~~~~g~-------------l~v~~~-~~~i~~~d~~~~-~~-~~~~~~~~~~p~~i~~~ 116 (270)
T 1rwi_B 62 ---------PFNGLYQPQGLAVDGAGT-------------VYVTDF-NNRVVTLAAGSN-NQ-TVLPFDGLNYPEGLAVD 116 (270)
T ss_dssp ---------CCCSCCSCCCEEECTTCC-------------EEEEET-TTEEEEECTTCS-CC-EECCCCSCSSEEEEEEC
T ss_pred ---------eeCCcCCcceeEECCCCC-------------EEEEcC-CCEEEEEeCCCc-eE-eeeecCCcCCCcceEEC
Confidence 001112334456666554 555555 888999998754 22 2222 233678999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec
Q 047837 530 CNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA 609 (882)
Q Consensus 530 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 609 (882)
++|+.+++...++.|.+|+..+....... ......+.+++++++|+++++...++.|.+||...+.......
T Consensus 117 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-- 188 (270)
T 1rwi_B 117 TQGAVYVADRGNNRVVKLAAGSKTQTVLP------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-- 188 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTCCSCEECC------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC--
T ss_pred CCCCEEEEECCCCEEEEEECCCceeEeec------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc--
Confidence 99998888777889999976533221111 1112357889999999977777778899999988765443322
Q ss_pred cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 610 KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 610 ~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
.+...+..++++++|.++++...++.|.+||............+...+.+++++++|+++++...++.|+++++...+.
T Consensus 189 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 189 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 3346789999999998888887888999999876554332223446789999999999888888999999999876554
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1.6e-12 Score=131.38 Aligned_cols=220 Identities=10% Similarity=0.089 Sum_probs=163.3
Q ss_pred CCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEe
Q 047837 381 TGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLL 460 (882)
Q Consensus 381 ~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 460 (882)
..+++|++++.|+.|.+||.++++.+.+...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~------------------------------------------------- 33 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPL------------------------------------------------- 33 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEEC-------------------------------------------------
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCC-------------------------------------------------
Confidence 3568899999999999999988887654321
Q ss_pred eecc-ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC-CCCEEEEEEccCCCEEEEE
Q 047837 461 DAHD-AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH-SAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 461 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~ 538 (882)
+. ..+.++.+.|+++ +++ +.++.|..||. ++ +.+..+..+ ...+.++.+.++|+++++.
T Consensus 34 --~~~~~~~~~~~~pdG~-------------ilv--s~~~~V~~~d~-~G-~~~W~~~~~~~~~~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 34 --EKGWECNSVAATKAGE-------------ILF--SYSKGAKMITR-DG-RELWNIAAPAGCEMQTARILPDGNALVAW 94 (276)
T ss_dssp --CTTCCCCEEEECTTSC-------------EEE--ECBSEEEEECT-TS-CEEEEEECCTTCEEEEEEECTTSCEEEEE
T ss_pred --CccCCCcCeEECCCCC-------------EEE--eCCCCEEEECC-CC-CEEEEEcCCCCccccccEECCCCCEEEEe
Confidence 11 2344555666655 666 34677999998 55 566666654 3578899999999999998
Q ss_pred eC-CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEE
Q 047837 539 SA-DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMK 617 (882)
Q Consensus 539 ~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 617 (882)
+. ++.|..+|. .++...++........+......+++.++|+++++...++.|..||.+ |+.+.++. . ...+..
T Consensus 95 ~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~--~-~~~~~~ 169 (276)
T 3no2_A 95 CGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK--L-SGTPFS 169 (276)
T ss_dssp ESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE--C-SSCCCE
T ss_pred cCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE--C-CCCccc
Confidence 87 777877776 344444432211111111245566789999999999999999999998 99999987 2 246777
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC------CCeEEEEECCCCCEEEEEe
Q 047837 618 VTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG------EVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 618 ~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~s~d~~~l~s~~ 673 (882)
+.+.++|++++++..++.|..+|..+|+.+.++..+. ..+..+...++|.++++..
T Consensus 170 ~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 170 SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 8889999999999888899999999999998886432 2378889999999988874
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=7.2e-13 Score=154.70 Aligned_cols=246 Identities=12% Similarity=0.060 Sum_probs=166.7
Q ss_pred CCCCcceeeeccCCCcEEEEeeCCC-----cEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccc
Q 047837 369 HDPSVSCVARGCTGGVSFSTCSADG-----TIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVST 443 (882)
Q Consensus 369 h~~~v~~~~~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (882)
|...+..++|+ |||++|+.+..++ .|++||+.+++.....
T Consensus 123 ~~~~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------------------------------- 167 (710)
T 2xdw_A 123 GTVALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------------------------- 167 (710)
T ss_dssp SCEEEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE----------------------------------
T ss_pred CCEEEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 34456778888 8999988776543 8999999987654210
Q ss_pred cCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCc----------------EEEEEcC
Q 047837 444 QGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRT----------------IHLYDVK 507 (882)
Q Consensus 444 ~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~----------------v~iwd~~ 507 (882)
. ....+..++|+|+++ .|+.+..++. |++|++.
T Consensus 168 ----------------~--~~~~~~~~~wspDg~-------------~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~ 216 (710)
T 2xdw_A 168 ----------------L--ERVKFSCMAWTHDGK-------------GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG 216 (710)
T ss_dssp ----------------E--EEECSCCEEECTTSS-------------EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETT
T ss_pred ----------------c--cCcccceEEEEeCCC-------------EEEEEEECCccccccccccccCCCCEEEEEECC
Confidence 0 001123455666655 5555555444 9999998
Q ss_pred CCce---eEEEeecCCCCEEEEEEccCCCEEEEEeC-----CCeEEEEeCcc------Cc-cceeeeccceecccCCceE
Q 047837 508 RNFD---LIESIDDHSAAVTAVKFTCNGRKILSCSA-----DRSLVVRDVVE------TN-SAYKISRRHQQLASQGTVY 572 (882)
Q Consensus 508 ~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----dg~i~vwd~~~------~~-~~~~~~~~~~~~~~~~~v~ 572 (882)
++.. ++.....|...+..+.|+|||++|+..+. +..|++||+.+ +. ....+.. + ...+.
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~-----~~~~~ 290 (710)
T 2xdw_A 217 TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID-N-----FEGEY 290 (710)
T ss_dssp SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC-S-----SSSCE
T ss_pred CCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC-C-----CCcEE
Confidence 7632 22222335566889999999999987764 56899999986 32 2222222 1 12333
Q ss_pred EEEEecCCCEEEEEeCC----CcEEEEEccCCc--eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCc--EEEEEccCC
Q 047837 573 DMDIDPTMEVVITVGQD----KKINSFSIAAGK--LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKS--ICLYDFISG 644 (882)
Q Consensus 573 ~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~--i~iwd~~~~ 644 (882)
. .|+|+|+.|+..+.. +.|.+||+.++. ....+..+.....+..++|++++.++++...++. |++||+.+|
T Consensus 291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 3 588999988776653 369999998774 2344442222236778999988888888888884 666777788
Q ss_pred eEEEEEccCCCCeEEEEECCCCCEEEEE-e---CCCeEEEEeCCCCC
Q 047837 645 EMVAKAMGHGEVITGVTFLPDCKHIVSV-G---GDGLQRVKEKYGIL 687 (882)
Q Consensus 645 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~-~---~dg~i~vwd~~~~~ 687 (882)
+.+..+..+.+.|..+.++|+++.|+.. + ..+.|.+||+.++.
T Consensus 370 ~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 370 ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888888888889999999999866633 2 45789999998765
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=4.2e-12 Score=130.90 Aligned_cols=230 Identities=13% Similarity=0.025 Sum_probs=160.7
Q ss_pred EeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE
Q 047837 459 LLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 538 (882)
.+..+......++|+|+++ .+++++..++.|..|+..++ ...+..+...+.+++++++|+++++.
T Consensus 22 ~l~~~~~~~eg~~~d~~g~------------~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~ 86 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARS------------AVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACS 86 (296)
T ss_dssp EEECCCSSEEEEEEEGGGT------------EEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEE
T ss_pred EEecCCccccCCeEeCCCC------------EEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEe
Confidence 3444555677888888775 26778888999999998765 45566677889999999999988888
Q ss_pred eCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC-----------------CCcEEEEEccCCc
Q 047837 539 SADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ-----------------DKKINSFSIAAGK 601 (882)
Q Consensus 539 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----------------d~~v~iwd~~~~~ 601 (882)
..++.|.+||..++... .+.... .......+..++++|+|+++++... .+.|..++.. ++
T Consensus 87 ~~~~~i~~~d~~~g~~~-~~~~~~-~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWE-SIADSF-EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT 163 (296)
T ss_dssp TTTTEEEEECSTTCCEE-EEECEE-TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred cCCCeEEEEcCCCCcEE-EEeecc-CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence 77889999998755432 221111 0111235678999999998887321 2456666655 44
Q ss_pred eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc-CCeE---EEEEccCCCCeEEEEECCCCCEEEEEeCCCe
Q 047837 602 LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI-SGEM---VAKAMGHGEVITGVTFLPDCKHIVSVGGDGL 677 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~ 677 (882)
. ..+. .+...+..++|+|||++|++...++.|++||+. +++. ...+..+...+.+|+++++|+++++. ++.
T Consensus 164 ~-~~~~--~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~ 238 (296)
T 3e5z_A 164 L-SAPI--RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG 238 (296)
T ss_dssp E-EEEE--CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE
T ss_pred E-EEee--cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe
Confidence 3 3333 456678899999999999777778999999997 5654 33343456677889999999977766 789
Q ss_pred EEEEeCCCCCCCcccCCCCCcccEEEe-cCCCeEEE
Q 047837 678 QRVKEKYGILPPRNFAQPAALSPIIFC-EEEDQKCR 712 (882)
Q Consensus 678 i~vwd~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~ 712 (882)
|.+||.. +.....+..+.....++|. +++..+..
T Consensus 239 v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v 273 (296)
T 3e5z_A 239 VHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYM 273 (296)
T ss_dssp EEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEE
T ss_pred EEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEE
Confidence 9999987 4444444444336677785 44444433
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.51 E-value=7.6e-12 Score=146.05 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=102.3
Q ss_pred cCCCCCeEEEeec------eEEEEEECCCCceEEEEEecC----CCCCeEEEEEcCCCCEEEEeecC-CC--CeEEEEEC
Q 047837 9 KPDSSSKCAYVAG------CVLVVYDVDSSTQSHLMVSHR----MPKPLCCVAMSRDGRYVAAGESG-PQ--PAVLVWDC 75 (882)
Q Consensus 9 ~pd~~~~~~~~~~------~~v~vwd~~~~~~~~~l~~h~----~~~~I~~va~spdg~~la~g~~~-~d--~~I~vwd~ 75 (882)
.|||. .++|... ..+.+.+...+....++.... +...+..++|||||++||.+... ++ ..|++||+
T Consensus 80 ~~dG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 80 FKKGK-RYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EEETT-EEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred EEECC-EEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 37876 5555541 156666766665544432211 11358899999999999987642 11 28999999
Q ss_pred CCceeeEEeeccccceeEEEECCCCCEEEEEc--CE----------------EEEEEcCcceee--eeeecCCcccceeE
Q 047837 76 ANLAFISELKGHLYGVECIAFSPDGEHLVTVG--GY----------------IYLWNWRSAMLV--MKLKANSSCSAITS 135 (882)
Q Consensus 76 ~t~~~~~~l~~h~~~V~~lafspdg~~Las~~--~~----------------i~iWd~~~g~~~--~~~~~~~~~~~v~~ 135 (882)
.+++.+..... ...+..++|+|||+.|+.+. +. |++|++.+++.. .......+...+..
T Consensus 159 ~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 159 DGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 99998764322 22377899999999999877 43 999999887632 22222222256889
Q ss_pred EEEccCCCEEEEEC------CCcEEEEEccc
Q 047837 136 ACFSSDAKFIVTAG------KKHLKFWTIGS 160 (882)
Q Consensus 136 l~fs~d~~~l~~~~------~~~i~iwd~~~ 160 (882)
+.|+|||++|+... +..|.+||+.+
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 99999999988764 23688899875
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=6.1e-11 Score=125.30 Aligned_cols=285 Identities=12% Similarity=0.029 Sum_probs=176.9
Q ss_pred ccCCCCCeEEEeece-------EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec--------CCCCeEEE
Q 047837 8 KKPDSSSKCAYVAGC-------VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES--------GPQPAVLV 72 (882)
Q Consensus 8 ~~pd~~~~~~~~~~~-------~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~--------~~d~~I~v 72 (882)
..||+ ..+|.++. .|.+||..+++.+..+..-. .+ .+++||||++|+++.. ..++.|.+
T Consensus 28 ~~~~~--~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~--~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 28 PGADG--RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CCCCC--CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC--CC--CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 34565 45666664 89999999999887765332 33 9999999999999852 12568999
Q ss_pred EECCCceeeEEeecc-------ccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeee-eecCCcccceeEEEEcc
Q 047837 73 WDCANLAFISELKGH-------LYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMK-LKANSSCSAITSACFSS 140 (882)
Q Consensus 73 wd~~t~~~~~~l~~h-------~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~-~~~~~~~~~v~~l~fs~ 140 (882)
||..+++.+.++.-. ...-..++|+|||++|+.+. +.|.++| .+++.+.. +.... . +.+.|
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~---~~~~~ 174 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---C---YHIHP 174 (373)
T ss_pred EECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---e---EEEEe
Confidence 999999988876532 12345899999999998875 6799999 99999888 66542 2 44556
Q ss_pred CCC--EEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEE
Q 047837 141 DAK--FIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIY 218 (882)
Q Consensus 141 d~~--~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (882)
+++ +++.+.++.+.+++. +++.... . .....+ ....+
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~-~~~~~~-~~~~p------------------------------------- 213 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGA-G-LVGAML-TAAQN------------------------------------- 213 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEE-E-eccccc-cCCcc-------------------------------------
Confidence 543 444455688989998 5544100 0 000000 00000
Q ss_pred EEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeeccccee--cccccccCcccCCCCCccccc
Q 047837 219 ALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKH--AGTLHYSEAKKCNGENDTVST 296 (882)
Q Consensus 219 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 296 (882)
......+.+++..++..+..+.+.+.|+.+... +..+........ .
T Consensus 214 ------------------------~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~-----~--- 261 (373)
T 2mad_H 214 ------------------------LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK-----A--- 261 (373)
T ss_pred ------------------------eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc-----c---
Confidence 002345667666655555778888888865421 111110000000 0
Q ss_pred hhhhccccccCCCCCCcEEEeecCCCe-EEEEeC----------CceEEEEEcccccccceeeeeecCcceeeeecccCC
Q 047837 297 AKATELYFKLTPTIPNAIACQFSTSEK-LVVVYG----------DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGC 365 (882)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~s~~~~-ll~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 365 (882)
..........+.++++++ ++++.. .+.|.++|..+.+....+. .
T Consensus 262 ---------~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--~-------------- 316 (373)
T 2mad_H 262 ---------DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--L-------------- 316 (373)
T ss_pred ---------cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--C--------------
Confidence 000011123467899876 444332 3579999998765433221 0
Q ss_pred CCCCCCCcceeeeccCCCc-EEEEee-CCCcEEEEecCCCceeee
Q 047837 366 ENMHDPSVSCVARGCTGGV-SFSTCS-ADGTIRLWDLALQSELSK 408 (882)
Q Consensus 366 ~~~h~~~v~~~~~~~~~~~-~l~t~~-~dg~i~vwd~~~~~~~~~ 408 (882)
.....+++|+ +|++ +++++. .++.|.++|+.+++.+..
T Consensus 317 ----g~~p~~i~~s-~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 317 ----GHDVDAISVA-QDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ----CCCcCeEEEC-CCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 1245677888 7888 777776 589999999999988766
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=1.9e-11 Score=126.68 Aligned_cols=209 Identities=13% Similarity=0.074 Sum_probs=141.2
Q ss_pred EEEEEc--CCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGG--RDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
+++++. .++.|.++|+.+. +.+.++.-.. . ...+....+.+++.+.||.+.+.++.+............ ....
T Consensus 150 ~lyVan~~~~~~VsVID~~t~-~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~-~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-HPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTT-EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC-SCTT
T ss_pred EEEEEEcCCCCeEEEEECCCC-cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeeccee-cccc
Confidence 565554 3689999999987 6666664322 1 233444566777888899999999876333221111110 0111
Q ss_pred Cce-EEEEEe-cCCCEEEEEeCCCcEEEEEccCCc--eEEEEEe--------ccCCCCcEEEEECCCCCEEEEEeC----
Q 047837 569 GTV-YDMDID-PTMEVVITVGQDKKINSFSIAAGK--LIRSFKQ--------AKDFGDPMKVTVDPSGSYLVCSYS---- 632 (882)
Q Consensus 569 ~~v-~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~--------~~~~~~v~~~~~spdg~~l~~~~~---- 632 (882)
..+ ...+|. ++|++++ .+.+|+|.+.|+.++. .+..+.. .-..+....++++++++.|.....
T Consensus 225 ~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp SCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred ccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence 122 224664 6776555 5668999999997654 3333320 001234456888999998877643
Q ss_pred ------CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCC-EEEEE-eCCCeEEEEeCCCCCCCcccCCCCCcccEEEe
Q 047837 633 ------NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCK-HIVSV-GGDGLQRVKEKYGILPPRNFAQPAALSPIIFC 704 (882)
Q Consensus 633 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s 704 (882)
.+.|.+.|+.+++.+..+.. ...+.+|+|++|++ +|+++ ..++.|.++|..+.+...++..+.....++++
T Consensus 304 ~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s 382 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT 382 (386)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEE
T ss_pred cccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEEC
Confidence 25799999999999988863 24788999999997 66665 46899999999999999999888888888888
Q ss_pred cC
Q 047837 705 EE 706 (882)
Q Consensus 705 ~~ 706 (882)
++
T Consensus 383 ~d 384 (386)
T 3sjl_D 383 AD 384 (386)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.48 E-value=3e-10 Score=117.13 Aligned_cols=280 Identities=8% Similarity=0.002 Sum_probs=183.9
Q ss_pred eeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCC
Q 047837 243 VKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSE 322 (882)
Q Consensus 243 ~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 322 (882)
.+.+++++++|..+++...++.|.+||.. ++.. .+.. ......+..+++.++|
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~-------------------------~~~~~~~~~i~~~~~g 68 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPL-------------------------PTPDAKVMCLTISSDG 68 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEC-------------------------SSTTCCEEEEEECTTS
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecC-------------------------CcccCceeeEEECCCC
Confidence 34789999999977776668999999987 4322 1110 0112345688999999
Q ss_pred eEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecC
Q 047837 323 KLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLA 401 (882)
Q Consensus 323 ~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~ 401 (882)
.+.++.. ++.|..|+.+ ++. ..+.. ......+.++++. +++.++++...++.|.+||.
T Consensus 69 ~l~v~~~~~~~i~~~~~~-g~~----~~~~~--------------~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~- 127 (299)
T 2z2n_A 69 EVWFTENAANKIGRITKK-GII----KEYTL--------------PNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD- 127 (299)
T ss_dssp CEEEEETTTTEEEEECTT-SCE----EEEEC--------------SSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-
T ss_pred CEEEeCCCCCeEEEECCC-CcE----EEEeC--------------CCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-
Confidence 9887766 7889999875 211 11110 0123456677777 67888887777889999988
Q ss_pred CCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcc
Q 047837 402 LQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDV 481 (882)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 481 (882)
+++.... ....+...+..+++.+++.
T Consensus 128 ~g~~~~~--------------------------------------------------~~~~~~~~~~~i~~~~~g~---- 153 (299)
T 2z2n_A 128 DGKIREY--------------------------------------------------ELPNKGSYPSFITLGSDNA---- 153 (299)
T ss_dssp TCCEEEE--------------------------------------------------ECSSTTCCEEEEEECTTSC----
T ss_pred CCCEEEe--------------------------------------------------cCCCCCCCCceEEEcCCCC----
Confidence 4332110 0011223456666766665
Q ss_pred ceeccCCceEEEEEcCCCcEEEEEcCCCceeEE-EeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeec
Q 047837 482 LEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIE-SIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISR 560 (882)
Q Consensus 482 ~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 560 (882)
+.++...++.|..||. ++ .... ....+...+..++++++|+++++...++.|.+||. ++.. .....
T Consensus 154 ---------l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~ 220 (299)
T 2z2n_A 154 ---------LWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKI 220 (299)
T ss_dssp ---------EEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEEC
T ss_pred ---------EEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEEC
Confidence 6666666788999998 44 2322 23344567889999999998877777888999998 4432 22211
Q ss_pred cceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEE
Q 047837 561 RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYD 640 (882)
Q Consensus 561 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd 640 (882)
......+.+++++++|+++++...++.|..||. +++ +..+....+...+.++++ ++|+++++.. .+.|..++
T Consensus 221 ----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 221 ----PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp ----SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred ----CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 112357889999999997777667889999998 454 334432344567899999 9998877765 56787888
Q ss_pred ccCCe
Q 047837 641 FISGE 645 (882)
Q Consensus 641 ~~~~~ 645 (882)
.++++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 76654
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=1.1e-12 Score=152.50 Aligned_cols=246 Identities=9% Similarity=0.001 Sum_probs=161.2
Q ss_pred CCCCCcceeeeccCCCcEEE-----EeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeecc
Q 047837 368 MHDPSVSCVARGCTGGVSFS-----TCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVS 442 (882)
Q Consensus 368 ~h~~~v~~~~~~~~~~~~l~-----t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (882)
+|...+..++|+ |||++|+ .|+.+.+|++||+.+++.+......
T Consensus 118 ~~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~------------------------------ 166 (695)
T 2bkl_A 118 DGTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE------------------------------ 166 (695)
T ss_dssp SSCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS------------------------------
T ss_pred CCCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC------------------------------
Confidence 345567788888 8999988 4445578999999987653100000
Q ss_pred ccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCc-------------EEEEEcCCC
Q 047837 443 TQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRT-------------IHLYDVKRN 509 (882)
Q Consensus 443 ~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~-------------v~iwd~~~~ 509 (882)
.. ....++|+|+++ .|+.++.|.. |++|++.++
T Consensus 167 -------------------~~--~~~~~~wspDg~-------------~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~ 212 (695)
T 2bkl_A 167 -------------------GG--KYATPKWTPDSK-------------GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTE 212 (695)
T ss_dssp -------------------CC--TTCCCEECTTSS-------------EEEEEECCCCTTSCGGGGGGGCEEEEEETTSC
T ss_pred -------------------cc--cccceEEecCCC-------------EEEEEEecCCCCCccccCCCCCEEEEEECCCC
Confidence 00 002345666665 6666666554 999999876
Q ss_pred ce---eEEEeecCCCCEEEEEEccCCCEEEEEeCCC----eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCE
Q 047837 510 FD---LIESIDDHSAAVTAVKFTCNGRKILSCSADR----SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEV 582 (882)
Q Consensus 510 ~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 582 (882)
.. ++.....|...+..+.|+|||++|+..+.++ .|++|+..++ ....+... ...+....+ ++|.+
T Consensus 213 ~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~------~~~~~~~~~-~~g~l 284 (695)
T 2bkl_A 213 PSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-DFRLLVKG------VGAKYEVHA-WKDRF 284 (695)
T ss_dssp GGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-SCEEEEEC------SSCCEEEEE-ETTEE
T ss_pred chhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-ceEEeecC------CCceEEEEe-cCCcE
Confidence 32 3333344667889999999999998877665 6777765433 22222221 234555556 56664
Q ss_pred EEEEe---CCCcEEEEEccCCce--EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc-CCeEEEEEccC-CC
Q 047837 583 VITVG---QDKKINSFSIAAGKL--IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI-SGEMVAKAMGH-GE 655 (882)
Q Consensus 583 l~~~~---~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h-~~ 655 (882)
++... .++.|.+||+.+++. ...+..+.....+..++|+ ++.++++...|+..+||.+. +++.+..+..+ .+
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~ 363 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG 363 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS
T ss_pred EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe
Confidence 44433 257899999987753 2344312224557788888 77788888999988888765 46666666655 66
Q ss_pred CeEEEEECCCCCEEEEEe----CCCeEEEEeCCCCC
Q 047837 656 VITGVTFLPDCKHIVSVG----GDGLQRVKEKYGIL 687 (882)
Q Consensus 656 ~v~~l~~s~d~~~l~s~~----~dg~i~vwd~~~~~ 687 (882)
.|..+.++||++.|+... ..++|++||+.++.
T Consensus 364 ~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 364 AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788899999998777332 45789999998755
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=4.7e-10 Score=118.52 Aligned_cols=287 Identities=9% Similarity=-0.046 Sum_probs=177.0
Q ss_pred EecCCCEEEEEec--CC---eEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCe
Q 047837 249 LSASSKLIACACS--NG---AVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEK 323 (882)
Q Consensus 249 ~s~d~~~l~~~~~--dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 323 (882)
..|+++++++... .. .|.+||..+++.+.++.. .... .++++|||+
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~----------------------------g~~p-~i~~spDg~ 78 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG----------------------------GFLP-NPVAAHSGS 78 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC----------------------------CCCC-CeEECCCCC
Confidence 3477777777653 22 889999999887655531 0112 589999998
Q ss_pred EEEEe-----------CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeC-
Q 047837 324 LVVVY-----------GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSA- 391 (882)
Q Consensus 324 ll~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~- 391 (882)
.+... .++.|.+||..+.+........ +. .. ..+......++++ ++|++|+++..
T Consensus 79 ~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~-~~-~~----------~~~g~~p~~~~~s-pDG~~l~v~n~~ 145 (373)
T 2mad_H 79 EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP-DA-PR----------FDVGPYSWMNANT-PNNADLLFFQFA 145 (373)
T ss_pred EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC-Cc-cc----------cccCCCccceEEC-CCCCEEEEEecC
Confidence 55544 2578999999765443322110 00 00 0011233467888 89999988764
Q ss_pred -CCcEEEEecCCCceeee-cccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEE
Q 047837 392 -DGTIRLWDLALQSELSK-DVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILS 469 (882)
Q Consensus 392 -dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~ 469 (882)
++.|.++| .+++.+.. ...+. +
T Consensus 146 ~~~~v~viD-~t~~~~~~~i~~~~-------------------------------------------------------~ 169 (373)
T 2mad_H 146 AGPAVGLVV-QGGSSDDQLLSSPT-------------------------------------------------------C 169 (373)
T ss_pred CCCeEEEEE-CCCCEEeEEcCCCc-------------------------------------------------------e
Confidence 47899999 88765432 21100 0
Q ss_pred EEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-----cCCCC-EEEEEEccCCCEEEEEeCCCe
Q 047837 470 LSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-----DHSAA-VTAVKFTCNGRKILSCSADRS 543 (882)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-----~h~~~-v~~~~~s~~~~~l~s~~~dg~ 543 (882)
+.+.+.++ ..+++.+.||.+.++|. ++ +...... ....+ .....+.+++..++..+..+.
T Consensus 170 ~~~~~~~~------------~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 170 YHIHPGAP------------STFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred EEEEeCCC------------ceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce
Confidence 11222221 14555667888888888 54 2221111 11122 233566777666555557788
Q ss_pred EEEEeCccCccce-e-eeccc----eecccCCceEEEEEecCCCEEEEEeC----------CCcEEEEEccCCceEEEEE
Q 047837 544 LVVRDVVETNSAY-K-ISRRH----QQLASQGTVYDMDIDPTMEVVITVGQ----------DKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 544 i~vwd~~~~~~~~-~-~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~ 607 (882)
+.+.|+....... . +.... ...-.......++++|+++.++++.. ++.|.++|+.+++.+.++.
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~ 315 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS 315 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE
Confidence 9999986442211 1 10000 00000123445789999998877653 3579999999999999986
Q ss_pred eccCCCCcEEEEECCCCC-EEEEEe-CCCcEEEEEccCCeEEEEE
Q 047837 608 QAKDFGDPMKVTVDPSGS-YLVCSY-SNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 608 ~~~~~~~v~~~~~spdg~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 650 (882)
-......++|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 316 ---~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 316 ---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ---CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 234689999999999 677776 5899999999999998884
No 200
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=3.3e-08 Score=116.49 Aligned_cols=534 Identities=10% Similarity=0.015 Sum_probs=297.5
Q ss_pred CCCCCe-EEEeece-EEEEEECCCCceEEEEEecCC-----CCCeEEEEEcC--CCCEEEEeecCCCCeEEEEECCCcee
Q 047837 10 PDSSSK-CAYVAGC-VLVVYDVDSSTQSHLMVSHRM-----PKPLCCVAMSR--DGRYVAAGESGPQPAVLVWDCANLAF 80 (882)
Q Consensus 10 pd~~~~-~~~~~~~-~v~vwd~~~~~~~~~l~~h~~-----~~~I~~va~sp--dg~~la~g~~~~d~~I~vwd~~t~~~ 80 (882)
.|..+. +-....+ -+..||.++++.......+.. ...|.++.... +|.+. +++. ++-|..||..+++.
T Consensus 73 ~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lw-i~t~--~~gl~~~~~~~~~~ 149 (781)
T 3v9f_A 73 TDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLW-VCTY--YRGIEYLDIATGKF 149 (781)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEE-EEES--SSCEEEEETTTTEE
T ss_pred EcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEE-EEEC--CCCeeEEECCCCeE
Confidence 444444 4444444 799999987765433111110 13689999888 77644 4432 23489999888765
Q ss_pred eEEee-----ccccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecC-----CcccceeEEEEccCCCEEEEEC
Q 047837 81 ISELK-----GHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKAN-----SSCSAITSACFSSDAKFIVTAG 149 (882)
Q Consensus 81 ~~~l~-----~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~-----~~~~~v~~l~fs~d~~~l~~~~ 149 (882)
..... -....|.++...++|.+.+... +-|..||..+++........ .....|.++...+++.+.+...
T Consensus 150 ~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~ 229 (781)
T 3v9f_A 150 THYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS 229 (781)
T ss_dssp EEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET
T ss_pred EeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC
Confidence 43211 1235688999888888877655 57999998887654321110 0115699999999998887765
Q ss_pred CCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEE
Q 047837 150 KKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIV 229 (882)
Q Consensus 150 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~ 229 (882)
. .+.+||..++.. ....... ..+..+ ....+ ..........+|.++..+-++.+
T Consensus 230 ~-Gl~~~d~~~~~~--~~~~~~~------~~~~~l---~~~~i--------------~~i~~d~~g~lWigt~~~Gl~~~ 283 (781)
T 3v9f_A 230 K-GLALFNANTETF--TNFHNNP------GNIHGA---LSSYI--------------FSIKQLKDNKLWIATELNGIMIL 283 (781)
T ss_dssp T-EEEEEETTTTEE--EC--------------------CCCCE--------------EEEEECTTSEEEEEESSSCEEEE
T ss_pred C-cHheECCCCCcE--EEEEcCC------Cccccc---cCceE--------------EEEEECCCCCEEEEeCCCCeEEE
Confidence 5 788898776544 1110000 000000 00000 01111233457777774455555
Q ss_pred ccCceeee-----------------EeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCc
Q 047837 230 HSGLSVTK-----------------SVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGEND 292 (882)
Q Consensus 230 ~~~~~~~~-----------------~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 292 (882)
+....... ......+.++...++|. |-+|+.++-|..++..+..... +..... ....
T Consensus 284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~---~~~~- 357 (781)
T 3v9f_A 284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPT---QMNE- 357 (781)
T ss_dssp ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC-------CCCS-
T ss_pred CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCcc---cccc-
Confidence 44322111 11234567788888776 6667777778888876543211 100000 0000
Q ss_pred cccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCC
Q 047837 293 TVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPS 372 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~ 372 (882)
..-....+.++...++|.+.+++.++.|..|+..+..... +.. . .......
T Consensus 358 -------------~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~----~~~-~-----------~~~~~~~ 408 (781)
T 3v9f_A 358 -------------SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIY----NKE-N-----------RELLSNS 408 (781)
T ss_dssp -------------SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEEC----C-----------------CCCSB
T ss_pred -------------CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEE----ccC-C-----------CCCCCcc
Confidence 0012234678888888999999887889999986532111 100 0 0112355
Q ss_pred cceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 373 v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
|.++... .++.+ ..|+.++-|..++..+++..... .
T Consensus 409 v~~i~~d-~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~-~----------------------------------------- 444 (781)
T 3v9f_A 409 VLCSLKD-SEGNL-WFGTYLGNISYYNTRLKKFQIIE-L----------------------------------------- 444 (781)
T ss_dssp EEEEEEC-TTSCE-EEEETTEEEEEECSSSCEEEECC-S-----------------------------------------
T ss_pred eEEEEEC-CCCCE-EEEeccCCEEEEcCCCCcEEEec-c-----------------------------------------
Confidence 6666665 45554 44666667888887665422100 0
Q ss_pred CCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecC-----CCCEEEEE
Q 047837 453 SRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDH-----SAAVTAVK 527 (882)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h-----~~~v~~~~ 527 (882)
. ......|.++...+++. |..|.. +-+..||..++ ......... ...|.++.
T Consensus 445 -~------~~~~~~v~~i~~d~~g~--------------lwigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 445 -E------KNELLDVRVFYEDKNKK--------------IWIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIA 501 (781)
T ss_dssp -T------TTCCCCEEEEEECTTSE--------------EEEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEE
T ss_pred -C------CCCCCeEEEEEECCCCC--------------EEEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEE
Confidence 0 01123455555554443 444545 45888987764 222222111 36799999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEE
Q 047837 528 FTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFK 607 (882)
Q Consensus 528 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 607 (882)
..++|++.+....+| +..||..+.. ........ ......|.++...++|.+.+.. .+|-+..||..+++.. .+.
T Consensus 502 ~d~~g~lWigt~~~G-l~~~~~~~~~-~~~~~~~~--~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~ 575 (781)
T 3v9f_A 502 QDSEGRFWIGTFGGG-VGIYTPDMQL-VRKFNQYE--GFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQ 575 (781)
T ss_dssp ECTTCCEEEEESSSC-EEEECTTCCE-EEEECTTT--TCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EEC
T ss_pred EcCCCCEEEEEcCCC-EEEEeCCCCe-EEEccCCC--CCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-Ecc
Confidence 999888776554455 7778876432 22221111 1123578999999999876654 4665588998876543 332
Q ss_pred e-cc-CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC----C--CeEEEEECCCCCEEEEEeCCCeEE
Q 047837 608 Q-AK-DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG----E--VITGVTFLPDCKHIVSVGGDGLQR 679 (882)
Q Consensus 608 ~-~~-~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~--~v~~l~~s~d~~~l~s~~~dg~i~ 679 (882)
. .+ ....+.++...++|++.+++ .+| |..+|..+++. ..+.... . ...++...++|++++ ++.+|.+
T Consensus 576 ~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~- 650 (781)
T 3v9f_A 576 RKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGLC- 650 (781)
T ss_dssp GGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTEE-EEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEEE-
T ss_pred ccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCce-EEecccCCccccccccCceEECCCCEEEE-ECCCceE-
Confidence 1 11 23468899999999877765 444 78889877654 3332211 1 234677788887666 6667744
Q ss_pred EEeCCC
Q 047837 680 VKEKYG 685 (882)
Q Consensus 680 vwd~~~ 685 (882)
.++...
T Consensus 651 ~f~p~~ 656 (781)
T 3v9f_A 651 FFNPDI 656 (781)
T ss_dssp EECSCC
T ss_pred EEChhh
Confidence 556543
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=5.8e-10 Score=114.97 Aligned_cols=278 Identities=9% Similarity=-0.003 Sum_probs=184.8
Q ss_pred CCCcEEEeecCCCeEEEEeC-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 310 IPNAIACQFSTSEKLVVVYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 310 ~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
...+.++++.++|++.++.. ++.|.+||.. ++... ..+. .+...+.++++. +++.++++
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~----------------~~~~~~~~i~~~-~~g~l~v~ 78 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVP----------------TPDAKVMCLIVS-SLGDIWFT 78 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECS----------------STTCCEEEEEEC-TTSCEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECC----------------CCCCcceeEEEC-CCCCEEEE
Confidence 34566899999999888775 7899999986 32211 0010 122456677777 77887777
Q ss_pred eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEE
Q 047837 389 CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEIL 468 (882)
Q Consensus 389 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~ 468 (882)
...++.|..||.. ++.. ... .......+.
T Consensus 79 ~~~~~~v~~~d~~-g~~~-~~~-------------------------------------------------~~~~~~~~~ 107 (300)
T 2qc5_A 79 ENGANKIGKLSKK-GGFT-EYP-------------------------------------------------LPQPDSGPY 107 (300)
T ss_dssp ETTTTEEEEECTT-SCEE-EEE-------------------------------------------------CSSTTCCEE
T ss_pred ecCCCeEEEECCC-CCeE-Eec-------------------------------------------------CCCCCCCCc
Confidence 7667889999877 4321 100 001123455
Q ss_pred EEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 047837 469 SLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
.+++.+++. ++++...++.|..+|.. +......+......+..++++++++.+++...++.|..+|
T Consensus 108 ~i~~~~~g~-------------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 108 GITEGLNGD-------------IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSTTC-------------EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred cceECCCCC-------------EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 666666665 66666667889999886 4222222333456789999999999777777678899999
Q ss_pred CccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEE
Q 047837 549 VVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLV 628 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 628 (882)
.. +... .... ......+..+++++++.++++....+.|.+||. +++.... ........+..++++++|++++
T Consensus 174 ~~-g~~~-~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 174 NT-GKLE-EYPL----PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp TT-CCEE-EEEC----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEE
T ss_pred CC-CcEE-EeeC----CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEE
Confidence 83 3222 2211 112246889999999988777767788999998 5554433 2123456789999999999877
Q ss_pred EEeCCCcEEEEEccCCeEEEE-EccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 629 CSYSNKSICLYDFISGEMVAK-AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 629 ~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
+...++.|..||. +++.... +......+.++++.++|+++++.. . .|..+|.
T Consensus 246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 7777789999998 5554322 333456788999999998776555 4 6666664
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=1.3e-11 Score=124.67 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=154.4
Q ss_pred ceEEEEEcCCCcEEEEEcCCCceeEEEeecCC-CCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceeccc
Q 047837 489 HYFLASGGRDRTIHLYDVKRNFDLIESIDDHS-AAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 489 ~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
+++|++++.++.|.+||..++ +.+-.+..+. ..+.++.++|+|++|+ +.++.|..||. +++...++....
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~----- 75 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA----- 75 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT-----
T ss_pred CcEEEeeCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC-----
Confidence 358999999999999998887 6677777665 5788999999999888 45678999998 676666554321
Q ss_pred CCceEEEEEecCCCEEEEEeC-CCcEEEEEccCCceEEEEEecc----CCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 568 QGTVYDMDIDPTMEVVITVGQ-DKKINSFSIAAGKLIRSFKQAK----DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
...+.++.+.++|+++++.+. ++.|..+|. +|+.+..+.... +...+..+++.++|+++++...++.|..||.+
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 236788999999999999887 778888886 688888876321 11245567889999999999999999999987
Q ss_pred CCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccC
Q 047837 643 SGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFA 693 (882)
Q Consensus 643 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 693 (882)
|+.+.++..+ ..+.++.+.++|++|++++.++.|..+|..+++....+.
T Consensus 155 -G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 155 -GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp -SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred -CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 9999888754 456678889999999998888899999998777766653
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=6.5e-11 Score=123.14 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=161.4
Q ss_pred CcceeeeccCCCcEEEE-------eeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeecccc
Q 047837 372 SVSCVARGCTGGVSFST-------CSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQ 444 (882)
Q Consensus 372 ~v~~~~~~~~~~~~l~t-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (882)
...+++|+ +++.++++ ...++.|.+||..+++....
T Consensus 19 ~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------------------------ 61 (314)
T 1pjx_A 19 GAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------------------------------------ 61 (314)
T ss_dssp TCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE------------------------------------
T ss_pred CccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE------------------------------------
Confidence 45678887 78888887 67788999999876553210
Q ss_pred CeEEEEEcCCCCEEEeeeccceEEEEEEecC-CCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEE-eec----
Q 047837 445 GYRSMAVSSRGSTLLLDAHDAEILSLSFSLS-SKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIES-IDD---- 518 (882)
Q Consensus 445 ~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~-~~~---- 518 (882)
.. + ...++...+..++++++ +. ++++.. .+.|.+||.. + +.... ...
T Consensus 62 -----~~-~-----~~~~~~~~~~~i~~~~~~g~-------------l~v~~~-~~~l~~~d~~-g-~~~~~~~~~~~~~ 114 (314)
T 1pjx_A 62 -----CK-P-----EVNGYGGIPAGCQCDRDANQ-------------LFVADM-RLGLLVVQTD-G-TFEEIAKKDSEGR 114 (314)
T ss_dssp -----EC-C-----EETTEECCEEEEEECSSSSE-------------EEEEET-TTEEEEEETT-S-CEEECCSBCTTSC
T ss_pred -----Ee-c-----ccCCCCCCCceEEEecCCCc-------------EEEEEC-CCCEEEEeCC-C-CEEEEEeccCCCc
Confidence 00 0 00112345667777776 54 444443 4478899987 4 33222 111
Q ss_pred CCCCEEEEEEccCCCEEEEEeCC---------------CeEEEEeCccCccceeeeccceecccCCceEEEEEe----cC
Q 047837 519 HSAAVTAVKFTCNGRKILSCSAD---------------RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDID----PT 579 (882)
Q Consensus 519 h~~~v~~~~~s~~~~~l~s~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~ 579 (882)
....+.+++++++|+++++...+ +.|..|+.. + ....... .......++++ |+
T Consensus 115 ~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~------~~~~~~~i~~~~~~d~d 186 (314)
T 1pjx_A 115 RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVDT------AFQFPNGIAVRHMNDGR 186 (314)
T ss_dssp BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEEE------EESSEEEEEEEECTTSC
T ss_pred cccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEEEecc------CCCCcceEEEecccCCC
Confidence 12458899999999988877655 567777654 2 2222211 11356789999 99
Q ss_pred CCEEEEE-eCCCcEEEEEcc-CCceE--EEEE-eccCC-CCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccC
Q 047837 580 MEVVITV-GQDKKINSFSIA-AGKLI--RSFK-QAKDF-GDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGH 653 (882)
Q Consensus 580 ~~~l~~~-~~d~~v~iwd~~-~~~~~--~~~~-~~~~~-~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 653 (882)
++.++.+ ..++.|.+||+. +++.. ..+. ...+. ..+..++++++|+++++...++.|.+||..+++.+..+..+
T Consensus 187 g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence 9765554 567899999987 45421 1111 11232 56788999999999988888899999999878777777767
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCC
Q 047837 654 GEVITGVTFLPDCKHIV-SVGGDGLQRVKEKYG 685 (882)
Q Consensus 654 ~~~v~~l~~s~d~~~l~-s~~~dg~i~vwd~~~ 685 (882)
...+.+++|++++++|+ +...++.|..|++..
T Consensus 267 ~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 267 FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 78899999999999555 445678899999864
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.41 E-value=1.1e-11 Score=144.28 Aligned_cols=243 Identities=12% Similarity=0.034 Sum_probs=154.8
Q ss_pred cEEEeecCCCeEEEEe-----C-CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 313 AIACQFSTSEKLVVVY-----G-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~-----~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
+..++|||||++|+.. . +..|++||+.+++... ..+. .......++|+ +|++.|
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~--------------~~~~~~~~~ws-pDg~~l 182 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVI--------------EGGKYATPKWT-PDSKGF 182 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCB--------------SCCTTCCCEEC-TTSSEE
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----Cccc--------------CcccccceEEe-cCCCEE
Confidence 5578999999977632 1 4689999998875420 0000 01112568888 899999
Q ss_pred EEeeCCCc-------------EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcC
Q 047837 387 STCSADGT-------------IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSS 453 (882)
Q Consensus 387 ~t~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 453 (882)
+.++.|.. |++|++.++.....
T Consensus 183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--------------------------------------------- 217 (695)
T 2bkl_A 183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT--------------------------------------------- 217 (695)
T ss_dssp EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE---------------------------------------------
T ss_pred EEEEecCCCCCccccCCCCCEEEEEECCCCchhce---------------------------------------------
Confidence 99988776 99999887652110
Q ss_pred CCCEEEe--eeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCC----cEEEEEcCCCceeEEEeecCCCCEEEEE
Q 047837 454 RGSTLLL--DAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDR----TIHLYDVKRNFDLIESIDDHSAAVTAVK 527 (882)
Q Consensus 454 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg----~v~iwd~~~~~~~~~~~~~h~~~v~~~~ 527 (882)
++. ..|...+..+.|+|+++ +|+.++.++ .|++++..++ ....+..+...+....
T Consensus 218 ----lv~~~~~~~~~~~~~~~SpDG~-------------~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~ 278 (695)
T 2bkl_A 218 ----VVHERTGDPTTFLQSDLSRDGK-------------YLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVH 278 (695)
T ss_dssp ----EEECCCCCTTCEEEEEECTTSC-------------CEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEE
T ss_pred ----EEEecCCCCEEEEEEEECCCCC-------------EEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEE
Confidence 011 12334566777777776 566555444 5666655433 3344555666666666
Q ss_pred EccCCCEEEEEe---CCCeEEEEeCccCcc--ceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc-CCc
Q 047837 528 FTCNGRKILSCS---ADRSLVVRDVVETNS--AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA-AGK 601 (882)
Q Consensus 528 ~s~~~~~l~s~~---~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~ 601 (882)
+ ++|.+++... .++.|.+||+.++.. ...+.... ....+..++|+ ++.++++...|+..++|.+. +++
T Consensus 279 ~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 279 A-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED----SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp E-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC----SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred e-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC----CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 6 5666444443 257899999976542 12222211 12457888888 67788888899988887665 466
Q ss_pred eEEEEEeccCCCCcEEEEECCCCCEEEEEe----CCCcEEEEEccCCeE
Q 047837 602 LIRSFKQAKDFGDPMKVTVDPSGSYLVCSY----SNKSICLYDFISGEM 646 (882)
Q Consensus 602 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----~dg~i~iwd~~~~~~ 646 (882)
....+.. ...+.+..++++|+++.++... ..++|++||+.+++.
T Consensus 353 ~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 353 PVRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eeEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6665541 2255677788999998777433 347899999998874
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=1.6e-10 Score=122.35 Aligned_cols=275 Identities=13% Similarity=0.083 Sum_probs=173.8
Q ss_pred eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC--------CCCeEEEEECCCceeeEEeecc------
Q 047837 22 CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG--------PQPAVLVWDCANLAFISELKGH------ 87 (882)
Q Consensus 22 ~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~--------~d~~I~vwd~~t~~~~~~l~~h------ 87 (882)
+.|.++|..+++.+..+.--. .+ .+++||||++|+++... .++.|.++|..+++.+.++.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~--~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF--LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS--SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECCC--CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 699999999999998886544 45 89999999999988531 2568999999999999887521
Q ss_pred -ccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCC--CEEEEECCCcEEEEEccc
Q 047837 88 -LYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDA--KFIVTAGKKHLKFWTIGS 160 (882)
Q Consensus 88 -~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~--~~l~~~~~~~i~iwd~~~ 160 (882)
...-..++|+|||++|..+. +.|.+.|+.+++.+.++.... . ....|++ .+++.+.+|.+.+.+..+
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~---~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C---YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E---EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c---eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 23456799999999998875 689999999999999988643 1 2223322 234444556666666643
Q ss_pred CccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEee
Q 047837 161 SATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVD 240 (882)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~ 240 (882)
++..... . ..+.....++
T Consensus 249 ~~v~~~~--~--~~~~v~~~p~---------------------------------------------------------- 266 (426)
T 3c75_H 249 GETKVTN--T--EVFHTEDELL---------------------------------------------------------- 266 (426)
T ss_dssp TCCEEEE--C--CCCSCTTSCB----------------------------------------------------------
T ss_pred CcEEEEe--e--eeeccCCCce----------------------------------------------------------
Confidence 3321000 0 0000000000
Q ss_pred ceeeeeEEEecCCCEEEEEecCCeEEeeecccceec--ccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEee
Q 047837 241 LKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHA--GTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQF 318 (882)
Q Consensus 241 ~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
...+.|.+++..++.....+.|.+.|....... ..+... .. ..+. ....+ .....+++
T Consensus 267 ---~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~------~~-~~i~--------~g~~p--~g~~~va~ 326 (426)
T 3c75_H 267 ---INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL------TE-AERA--------DDWRP--GGWQQTAY 326 (426)
T ss_dssp ---CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS------CT-TTGG--------GTEEE--CSSSCEEE
T ss_pred ---eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec------cc-cccc--------ccccc--CCceeeEE
Confidence 023567888888888788899999998654321 111000 00 0000 00000 01113578
Q ss_pred cCCCe-EEEEe----------CCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCc-EE
Q 047837 319 STSEK-LVVVY----------GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGV-SF 386 (882)
Q Consensus 319 s~~~~-ll~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~-~l 386 (882)
+++++ +++.. ..+.|.++|..+.+....+..- .....++|+ ++++ ++
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--------------------~~P~gia~s-pDg~~~l 385 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--------------------HEIDSINVS-QDAEPLL 385 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--------------------EEECEEEEC-CSSSCEE
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--------------------CCcCeEEEc-cCCCEEE
Confidence 99875 44442 1468999999887655433211 124456676 7887 77
Q ss_pred EEee-CCCcEEEEecCCCceeeec
Q 047837 387 STCS-ADGTIRLWDLALQSELSKD 409 (882)
Q Consensus 387 ~t~~-~dg~i~vwd~~~~~~~~~~ 409 (882)
+++. .++.|.++|+.+.+.+.+.
T Consensus 386 yv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCeEEEEECCCCCEEEEe
Confidence 7777 5899999999999988664
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=1.5e-10 Score=119.00 Aligned_cols=227 Identities=12% Similarity=0.110 Sum_probs=152.2
Q ss_pred cceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 373 VSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 373 v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
..+..|++.++.++++...++.|..||..++....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------------------------------- 49 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------------------------------- 49 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------------------------------
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------------------------------
Confidence 34566764467777787788999999988654311
Q ss_pred CCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec----CCCCEEEEEE
Q 047837 453 SRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD----HSAAVTAVKF 528 (882)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~----h~~~v~~~~~ 528 (882)
-.....+.+++++++++ ++++. ++.|.+||..++ ........ ....+..+++
T Consensus 50 --------~~~~~~~~~i~~~~dG~-------------l~v~~--~~~l~~~d~~~g-~~~~~~~~~~~~~~~~~~di~~ 105 (297)
T 3g4e_A 50 --------VTMDAPVSSVALRQSGG-------------YVATI--GTKFCALNWKEQ-SAVVLATVDNDKKNNRFNDGKV 105 (297)
T ss_dssp --------EECSSCEEEEEEBTTSS-------------EEEEE--TTEEEEEETTTT-EEEEEEECCTTCSSEEEEEEEE
T ss_pred --------EeCCCceEEEEECCCCC-------------EEEEE--CCeEEEEECCCC-cEEEEEecCCCCCCCCCCCEEE
Confidence 01234566677777766 44443 467999998765 32222211 1245789999
Q ss_pred ccCCCEEEEEeCC---------CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEE-EeCCCcEEEEEc-
Q 047837 529 TCNGRKILSCSAD---------RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVIT-VGQDKKINSFSI- 597 (882)
Q Consensus 529 s~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~- 597 (882)
+|+|+++++...+ ....+|.+........+... ......++|+|+++.|+. .+.++.|.+||+
T Consensus 106 d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 106 DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec------cccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 9999977755321 23455555433322222211 135678999999997654 455789999997
Q ss_pred -cCCceE--EEEEe-ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEEC-CCCCEEEEE
Q 047837 598 -AAGKLI--RSFKQ-AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFL-PDCKHIVSV 672 (882)
Q Consensus 598 -~~~~~~--~~~~~-~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~s~ 672 (882)
.++... +.+.. ..+...+..++++++|++.++....+.|.+||..+|+.+..+..+...+++++|. ||++.|+.+
T Consensus 180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp TTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred CCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 456542 12211 1234568899999999988888888899999999999999988777889999998 888877665
Q ss_pred eC
Q 047837 673 GG 674 (882)
Q Consensus 673 ~~ 674 (882)
+.
T Consensus 260 ~~ 261 (297)
T 3g4e_A 260 CA 261 (297)
T ss_dssp EB
T ss_pred cC
Confidence 53
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=1.3e-09 Score=112.43 Aligned_cols=240 Identities=11% Similarity=0.022 Sum_probs=166.9
Q ss_pred CCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEE
Q 047837 371 PSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMA 450 (882)
Q Consensus 371 ~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (882)
..+.++++. +++.++++...++.|.+||.. ++... . .
T Consensus 20 ~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~-~----------------------------------------~ 56 (300)
T 2qc5_A 20 SGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKE-F----------------------------------------E 56 (300)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEE-E----------------------------------------E
T ss_pred CCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEE-E----------------------------------------E
Confidence 456677776 678888877778899999977 43211 0 0
Q ss_pred EcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEcc
Q 047837 451 VSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTC 530 (882)
Q Consensus 451 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~ 530 (882)
...+...+..+++.+++. +.++...++.|..||.. +.............+..+++.+
T Consensus 57 ---------~~~~~~~~~~i~~~~~g~-------------l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~ 113 (300)
T 2qc5_A 57 ---------VPTPDAKVMCLIVSSLGD-------------IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL 113 (300)
T ss_dssp ---------CSSTTCCEEEEEECTTSC-------------EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS
T ss_pred ---------CCCCCCcceeEEECCCCC-------------EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC
Confidence 001223455666666665 66666667889999987 4222222333446789999999
Q ss_pred CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc
Q 047837 531 NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK 610 (882)
Q Consensus 531 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 610 (882)
+|+++++...++.|..+|.. +... ..... .....+..+++.++++++++...++.|..||. +++... +....
T Consensus 114 ~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~ 185 (300)
T 2qc5_A 114 NGDIWFTQLNGDRIGKLTAD-GTIY-EYDLP----NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT 185 (300)
T ss_dssp TTCEEEEETTTTEEEEECTT-SCEE-EEECS----STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS
T ss_pred CCCEEEEccCCCeEEEECCC-CCEE-EccCC----CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC
Confidence 99988887778889999986 3322 22111 12347889999999997777666789999998 566543 33223
Q ss_pred CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEE-EccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 611 DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAK-AMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 611 ~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
....+..++++++|+++++....+.|.+||. +++.... +..+...+.+++++++|++.++...++.|..||..+
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g 260 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN 260 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC
Confidence 4567899999999988888777788999998 5654433 333556789999999999777776778999999843
No 208
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=3e-07 Score=108.40 Aligned_cols=514 Identities=11% Similarity=0.010 Sum_probs=291.1
Q ss_pred ccCCCCCeEEEeeceEEEEEECCCCceEEEEEecC--------CCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce
Q 047837 8 KKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHR--------MPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA 79 (882)
Q Consensus 8 ~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~--------~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~ 79 (882)
..-|..+.+-+....-+..||-.+ ...+.... ....|.+|...++|+.|-+|+. ++-+..||..+++
T Consensus 24 I~qD~~G~lWigT~~GL~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~--~~Gl~~~d~~~~~ 98 (781)
T 3v9f_A 24 ITQDKQGFLWFATEEGLNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQ--RAGLNAYNYETQS 98 (781)
T ss_dssp EEECTTSCEEEEESSCEEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEES--SSCEEEEETTTTE
T ss_pred EEECCCCCEEEccCCcCccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeC--CCCcceECCCCCe
Confidence 345555666666666688888542 22322111 0135999999999983445543 4359999998877
Q ss_pred eeEEe-e---c---cccceeEEEECC--CCCEEEEE-cCEEEEEEcCcceeeeeeecC---CcccceeEEEEccCCCEEE
Q 047837 80 FISEL-K---G---HLYGVECIAFSP--DGEHLVTV-GGYIYLWNWRSAMLVMKLKAN---SSCSAITSACFSSDAKFIV 146 (882)
Q Consensus 80 ~~~~l-~---~---h~~~V~~lafsp--dg~~Las~-~~~i~iWd~~~g~~~~~~~~~---~~~~~v~~l~fs~d~~~l~ 146 (882)
..... . . ....|.+|.... +|.+.+.. .+.|..+|..+++........ .....|.++...+++.+.+
T Consensus 99 f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 99 FSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp EEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEE
T ss_pred EEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEE
Confidence 54321 1 0 123689999988 88877766 367899998877654321100 0115688888888888887
Q ss_pred EECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceE
Q 047837 147 TAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGIL 226 (882)
Q Consensus 147 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i 226 (882)
....+.|..|+..++... ..... ...+.
T Consensus 179 gt~~~Gl~~~~~~~~~~~--~~~~~------~~~~~-------------------------------------------- 206 (781)
T 3v9f_A 179 GHVEGGLSILSLNDKSVK--HFVHD------PQNPN-------------------------------------------- 206 (781)
T ss_dssp EETTTEEEEEETTTTEEE--EECC--------------------------------------------------------
T ss_pred EecCCCeEEEcCCCCceE--eeecC------CCCcc--------------------------------------------
Confidence 665656888887655431 00000 00000
Q ss_pred EEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhcccccc
Q 047837 227 YIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKL 306 (882)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (882)
......+.++...+++.+.+ |+.+ -+.+||..+++...-.. .. .. ..
T Consensus 207 -----------~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~-~~-----~~--------------~~ 253 (781)
T 3v9f_A 207 -----------SLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHN-NP-----GN--------------IH 253 (781)
T ss_dssp -------------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------------------------
T ss_pred -----------cCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEc-CC-----Cc--------------cc
Confidence 00001125666777776444 4545 68888877654321110 00 00 00
Q ss_pred CCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 307 TPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 307 ~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
......+.++...++|.+.+++..+.|.++|..+....... ..+-..+... ..........|.++... .++. |
T Consensus 254 ~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~---~~~f~~~~~~--~~~~~l~~~~v~~i~~D-~~g~-l 326 (781)
T 3v9f_A 254 GALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE---QIRFEFIREG--DNNYSLSNASARYIFQD-SFNN-I 326 (781)
T ss_dssp --CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC------------CEEECBC--SSTTSBSSSCEEEEEEC-SSCC-E
T ss_pred cccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee---ccccccccCC--CCCCCCCCCeEEEEEEe-CCCC-E
Confidence 01223467788888999999988678889998764321100 0000000000 00011235567777776 4554 5
Q ss_pred EEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCC-CCEEEeeeccc
Q 047837 387 STCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSR-GSTLLLDAHDA 465 (882)
Q Consensus 387 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~ 465 (882)
-.|+.++-|..++........- ...+. .. .......
T Consensus 327 Wigt~~~Gl~~~~~~~~~~~~~-----------------------------------------~~~~~~~~--~~~l~~~ 363 (781)
T 3v9f_A 327 WIGTWGGGINFISNAPPTFHTW-----------------------------------------SYSPTQMN--ESSLSNK 363 (781)
T ss_dssp EEEEBSSCEEEECSSCCSCEEE-----------------------------------------C----CCC--SSCCSSS
T ss_pred EEEecCCeEEEeCCCCCcceee-----------------------------------------ccCccccc--cCCCCCc
Confidence 5566677788888765432110 00000 00 0001234
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEe----ecCCCCEEEEEEccCCCEEEEEeCC
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESI----DDHSAAVTAVKFTCNGRKILSCSAD 541 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~~~d 541 (882)
.|.++...+++. |..|+.++-|..|+..++ . ...+ ......|.++...+++.+.+ ++.+
T Consensus 364 ~v~~i~~d~~g~--------------lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~ 426 (781)
T 3v9f_A 364 VVSSVCDDGQGK--------------LWIGTDGGGINVFENGKR-V-AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYL 426 (781)
T ss_dssp CEEEEEECTTSC--------------EEEEEBSSCEEEEETTEE-E-EECC-----CCCSBEEEEEECTTSCEEE-EETT
T ss_pred ceEEEEEcCCCC--------------EEEEeCCCcEEEEECCCC-e-EEEccCCCCCCCcceEEEEECCCCCEEE-Eecc
Confidence 466666666554 556665566888887643 1 1111 12346799999888887666 5655
Q ss_pred CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEec---cCCCCcEEE
Q 047837 542 RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQA---KDFGDPMKV 618 (882)
Q Consensus 542 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~v~~~ 618 (882)
+-+..++..++.. ...... ......|.++...+++.+.+. +. +-|..||..+++........ .....|.++
T Consensus 427 ~Gl~~~~~~~~~~-~~~~~~---~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 427 GNISYYNTRLKKF-QIIELE---KNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp EEEEEECSSSCEE-EECCST---TTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred CCEEEEcCCCCcE-EEeccC---CCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 5688888764421 111110 112357899999888875554 44 56899998877654433211 113578999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc----CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 619 TVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG----HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 619 ~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
...++|++.+.....| |..||..+++.. .+.. ....|.++...++|.+.++.. +|.|..||..+..
T Consensus 501 ~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 501 AQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp EECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred EEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 9999998776654344 788998776543 3321 235789999999998776544 6765888876543
No 209
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.38 E-value=7.2e-11 Score=119.72 Aligned_cols=220 Identities=9% Similarity=-0.023 Sum_probs=148.4
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEE-EEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLA-SGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSL 544 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 544 (882)
....+++++++. +++ +...++.|.+|+..+. ........+...+.+++++++|+++++.. ++.|
T Consensus 25 ~p~~i~~~~~g~-------------l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGN-------------VYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCC-------------EEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECCCCC-------------EEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEE
Confidence 455666666665 566 5467788999987654 22111123335678999999999666665 8899
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG 624 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg 624 (882)
.+||...... ..... .....+..++++++|+++++...++.|.+|+..+........ .....+..++++++|
T Consensus 90 ~~~d~~~~~~-~~~~~-----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 90 VTLAAGSNNQ-TVLPF-----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--TGLNDPDGVAVDNSG 161 (270)
T ss_dssp EEECTTCSCC-EECCC-----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC--CSCCSCCCEEECTTC
T ss_pred EEEeCCCceE-eeeec-----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc--ccCCCceeEEEeCCC
Confidence 9999874322 11111 112468899999999988887778899999866544332221 334568899999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccC-CCCCcccEEE
Q 047837 625 SYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFA-QPAALSPIIF 703 (882)
Q Consensus 625 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~ 703 (882)
+++++...++.|.+||...+........+...+.+|+++++|.++++...++.|.+||..+........ .......+.+
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence 988887778899999988776554433444678999999999888877788999999987654332111 1123455667
Q ss_pred ecCCC
Q 047837 704 CEEED 708 (882)
Q Consensus 704 s~~~~ 708 (882)
++++.
T Consensus 242 ~~~g~ 246 (270)
T 1rwi_B 242 DSDRT 246 (270)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 66654
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=3.5e-11 Score=125.37 Aligned_cols=173 Identities=13% Similarity=0.170 Sum_probs=130.0
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc----------eeEEEeecCCCCEEEEEEccCCCEE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF----------DLIESIDDHSAAVTAVKFTCNGRKI 535 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l 535 (882)
.+..+++++... ++++|+.++ +.+|++.... +.... ..+.. |+.++| |+++|
T Consensus 39 ~~nlLais~~~g-------------ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L 100 (388)
T 1xip_A 39 SLQNLDISNSKS-------------LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQV 100 (388)
T ss_dssp CCBCEEEETTTT-------------EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEE
T ss_pred cccEEEEcCCCC-------------EEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEE
Confidence 466667777666 788888875 6669876421 12122 23566 999999 99999
Q ss_pred EEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCc
Q 047837 536 LSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDP 615 (882)
Q Consensus 536 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v 615 (882)
+++ .++.|++||+.+........ .+...+.++.+.+. .++++..||.|.+||++++.... + ...|
T Consensus 101 ~v~-~~~~l~v~dv~sl~~~~~~~------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~-----~~~V 165 (388)
T 1xip_A 101 LVS-TRNALYSLDLEELSEFRTVT------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L-----AQNV 165 (388)
T ss_dssp EEE-ESSEEEEEESSSTTCEEEEE------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E-----EESE
T ss_pred EEE-cCCcEEEEEchhhhccCccc------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c-----cCCc
Confidence 999 88999999998655333221 22346777776654 38889999999999999887653 2 2479
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEccCCeE--EEEE------c---cCCCCeEEEEECCCCCEEEEEe
Q 047837 616 MKVTVDPSGSYLVCSYSNKSICLYDFISGEM--VAKA------M---GHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 616 ~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
++++|||+| ++.|..||++++|+...++. ..++ . +|...|.+|.|.+++++|++=.
T Consensus 166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999999 67888999999999888775 5566 2 4788999999999999998543
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.34 E-value=4.3e-11 Score=140.18 Aligned_cols=179 Identities=11% Similarity=0.087 Sum_probs=119.4
Q ss_pred cEEEEEcCCCce---eEEEeecCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEeCccCc-c-ceeeeccceecccCC
Q 047837 500 TIHLYDVKRNFD---LIESIDDHSAAVTAVKFTCNGRKILSCSADR-----SLVVRDVVETN-S-AYKISRRHQQLASQG 569 (882)
Q Consensus 500 ~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~-~-~~~~~~~~~~~~~~~ 569 (882)
.|++|++.++.. ++.....+...+..+.|||||++|+..+.++ .|++||+.++. . ...+.... .
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~------~ 317 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL------K 317 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS------S
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC------C
Confidence 488999876532 2222223344688999999999998777544 89999998652 1 22222211 2
Q ss_pred ceEEEEEecCCCEEEEEeCC----CcEEEEEccCCc-eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc-C
Q 047837 570 TVYDMDIDPTMEVVITVGQD----KKINSFSIAAGK-LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI-S 643 (882)
Q Consensus 570 ~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~-~ 643 (882)
.+... ++|+|+.|+..+.+ +.|.+||+.++. ....+. ..+...+..++++ ++.++++...|+..+||.+. +
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 33334 35899988887754 459999998752 334443 1344456677777 56778888889987777665 5
Q ss_pred CeEEEEEcc-CCCCeEEEEECCCCCEEEEE----eCCCeEEEEeCCCCC
Q 047837 644 GEMVAKAMG-HGEVITGVTFLPDCKHIVSV----GGDGLQRVKEKYGIL 687 (882)
Q Consensus 644 ~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~----~~dg~i~vwd~~~~~ 687 (882)
++.+..+.. +.+.|..+.++||++.|+.. ...++|++||+.++.
T Consensus 395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666666654 36778899999998866633 245789999997654
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=7.7e-10 Score=118.69 Aligned_cols=240 Identities=11% Similarity=0.060 Sum_probs=159.3
Q ss_pred CCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEE
Q 047837 371 PSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMA 450 (882)
Q Consensus 371 ~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (882)
.....++|+ ++++++++...++.|++||..++......
T Consensus 131 ~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~----------------------------------------- 168 (409)
T 3hrp_A 131 KYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVH----------------------------------------- 168 (409)
T ss_dssp CCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEE-----------------------------------------
T ss_pred CCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEee-----------------------------------------
Confidence 346678888 78888888777899999999865532110
Q ss_pred EcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCC--cEEEEEcCCCceeEEEe---ec-CCCCEE
Q 047837 451 VSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDR--TIHLYDVKRNFDLIESI---DD-HSAAVT 524 (882)
Q Consensus 451 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg--~v~iwd~~~~~~~~~~~---~~-h~~~v~ 524 (882)
.. ..... ++|+++++ .|+++..++ .|.+++...+.. ...+ .. ....+.
T Consensus 169 ----------~~-~~~~~-ia~~~~g~-------------~l~~~d~~~~~~I~~~d~~~~~~-~~~~g~~~~~~~~~p~ 222 (409)
T 3hrp_A 169 ----------PG-FKGGK-PAVTKDKQ-------------RVYSIGWEGTHTVYVYMKASGWA-PTRIGQLGSTFSGKIG 222 (409)
T ss_dssp ----------ET-CCBCB-CEECTTSS-------------EEEEEBSSTTCEEEEEEGGGTTC-EEEEEECCTTSCSCCC
T ss_pred ----------cc-CCCCc-eeEecCCC-------------cEEEEecCCCceEEEEEcCCCce-eEEeeeccchhcCCcE
Confidence 00 11111 55666665 677776655 788888876533 2222 12 456678
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCce--EEEEEecC-CCEEEEEeCCCcEEEEEccCCc
Q 047837 525 AVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTV--YDMDIDPT-MEVVITVGQDKKINSFSIAAGK 601 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v--~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~ 601 (882)
+++++|++..|+.+..++.|+.||..+... .+............- ..++|+|+ +.++++-..++.|+.|+... +
T Consensus 223 ~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~ 299 (409)
T 3hrp_A 223 AVALDETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E 299 (409)
T ss_dssp BCEECTTSSEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C
T ss_pred EEEEeCCCCeEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C
Confidence 999999555565577788999999885542 121100011111112 38999995 55566666778999999763 3
Q ss_pred eEEEEEecc-------------CCCCcEEEEECCCCCEEEEEe-CCCcEEEEEccCCeEEEEEccC--------------
Q 047837 602 LIRSFKQAK-------------DFGDPMKVTVDPSGSYLVCSY-SNKSICLYDFISGEMVAKAMGH-------------- 653 (882)
Q Consensus 602 ~~~~~~~~~-------------~~~~v~~~~~spdg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h-------------- 653 (882)
+..+.... ....+..++++|+|+++++-. .++.|+.||+.+|+. ..+.++
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~ 377 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEA 377 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTC
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhce
Confidence 33333111 124588999999999888887 889999999888874 444443
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 047837 654 -GEVITGVTFLPDCKHIVSVGGDGLQRVKEK 683 (882)
Q Consensus 654 -~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~ 683 (882)
-.....|+++++|.++++-..++.|+.+++
T Consensus 378 ~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 378 TFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246889999999888888888888988775
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.30 E-value=3.4e-10 Score=132.62 Aligned_cols=241 Identities=12% Similarity=0.056 Sum_probs=151.2
Q ss_pred cEEEeecCCCeEEEEeCC------ceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEE
Q 047837 313 AIACQFSTSEKLVVVYGD------HSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSF 386 (882)
Q Consensus 313 ~~~~~~s~~~~ll~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l 386 (882)
+..++|||||+.++...+ ..|++||+.+++.... .+. ...+..++|+ +| +.|
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---------~~~-----------~~~~~~~~ws-pD-~~l 222 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---------ELK-----------WVKFSGLAWL-GN-DAL 222 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---------EEE-----------EEESCCCEES-TT-SEE
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---------cCC-----------CceeccEEEE-CC-CEE
Confidence 457899999986664331 4799999988754211 000 1113457787 77 888
Q ss_pred EEeeCCCc--------------EEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEc
Q 047837 387 STCSADGT--------------IRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVS 452 (882)
Q Consensus 387 ~t~~~dg~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 452 (882)
+.++.|+. |.+|++.++.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-------------------------------------------- 258 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ-------------------------------------------- 258 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCE--------------------------------------------
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCE--------------------------------------------
Confidence 87776654 77777765432100
Q ss_pred CCCCEEEee--eccceEEEEEEecCCCCCccceeccCCceEEEEEcCC-----CcEEEEEcCCCcee-EEEeecCCCCEE
Q 047837 453 SRGSTLLLD--AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRD-----RTIHLYDVKRNFDL-IESIDDHSAAVT 524 (882)
Q Consensus 453 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~v~iwd~~~~~~~-~~~~~~h~~~v~ 524 (882)
+++. .+...+..+.|+|+++ +|+..+.+ ..|++||+.++... ...+..+...+.
T Consensus 259 -----lv~~~~~~~~~~~~~~~SpDG~-------------~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 320 (741)
T 1yr2_A 259 -----PVFATPELPKRGHGASVSSDGR-------------WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW 320 (741)
T ss_dssp -----EEECCTTCTTCEEEEEECTTSC-------------EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE
T ss_pred -----EEeccCCCCeEEEEEEECCCCC-------------EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE
Confidence 0111 1122356667777766 56555433 48999999765223 455555655555
Q ss_pred EEEEccCCCEEEEEeCC----CeEEEEeCccCc-cceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc-
Q 047837 525 AVKFTCNGRKILSCSAD----RSLVVRDVVETN-SAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA- 598 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~d----g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~- 598 (882)
... +|+|+.|+..+.+ +.|.+||+.+.. ....+...+ ...+..++++ ++.++++...|+..++|.+.
T Consensus 321 ~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-----~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 321 DFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-----KDNLESVGIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp EEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-----SSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-----CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 554 4899998887753 459999987642 222332222 2356677887 56678888889887777654
Q ss_pred CCceEEEEEeccCCCCcEEEEECCCCCEEEEE----eCCCcEEEEEccCCe
Q 047837 599 AGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS----YSNKSICLYDFISGE 645 (882)
Q Consensus 599 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~~dg~i~iwd~~~~~ 645 (882)
+++....+.. .+.+.+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 394 ~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 394 DGKPAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TSCEEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4666666541 235678889999998866633 234789999999887
No 214
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.29 E-value=6e-06 Score=93.00 Aligned_cols=517 Identities=11% Similarity=0.046 Sum_probs=279.4
Q ss_pred CeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeE
Q 047837 14 SKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVEC 93 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~ 93 (882)
..++|..+..|...|+++......+.-... ..+.+|+|++++..|..+.. .++.|..+++........+.........
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~-~~~~~l~~d~~~~~lywtD~-~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGV-KEASALDFDVTDNRIYWTDI-SLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSC-SCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCC-CceEEEEEECCCCEEEEEEC-CCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 368888899999999997665444322111 56889999998888877754 3678999998765443334433356789
Q ss_pred EEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEEC---CCcEEEEEcccCccceec
Q 047837 94 IAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAG---KKHLKFWTIGSSATARTR 167 (882)
Q Consensus 94 lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~---~~~i~iwd~~~~~~~~~~ 167 (882)
||+.+.+..|..++ +.|.+.++........+... ......|++.|....|..+. ...|...+++.... ..
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~--l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~ 160 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD--LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TT 160 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS--CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC--CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EE
Confidence 99998887777776 88999998654322222222 25678999999655555443 24566666544322 00
Q ss_pred cccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeE
Q 047837 168 LNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGF 247 (882)
Q Consensus 168 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 247 (882)
+ +. ......++
T Consensus 161 l------------------------------------------------------------~~---------~~~~P~Gl 171 (628)
T 4a0p_A 161 L------------------------------------------------------------VP---------NVGRANGL 171 (628)
T ss_dssp E------------------------------------------------------------EC---------SCSSEEEE
T ss_pred E------------------------------------------------------------EC---------CCCCcceE
Confidence 0 00 01123789
Q ss_pred EEecCCCEEEEEe-cCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEE
Q 047837 248 ALSASSKLIACAC-SNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVV 326 (882)
Q Consensus 248 ~~s~d~~~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~ 326 (882)
++++++..|+.+. ..+.|..+++..... ..+. .......++++.. +.++.
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~---------------------------~~l~~P~glav~~-~~ly~ 222 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA---------------------------DDLPHPFGLTQYQ-DYIYW 222 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---------------------------ECCSCEEEEEEET-TEEEE
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCCce-EEee---------------------------ccCCCceEEEEEC-CEEEE
Confidence 9999877777665 457888888864322 1110 0112234566655 56555
Q ss_pred EeC-CceEEEEEcccccccceeeeeecCcceeeeeccc---------CCCCCCCCCcceeeeccCCCcEEEEeeCCCcEE
Q 047837 327 VYG-DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNL---------GCENMHDPSVSCVARGCTGGVSFSTCSADGTIR 396 (882)
Q Consensus 327 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~---------~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~ 396 (882)
+.. .+.|...|..+++.... +........++... +|. ..++....++...+.+.+-.. +.+|...
T Consensus 223 tD~~~~~I~~~dk~tg~~~~~---l~~~~~~p~~i~v~~~~~q~~~n~C~-~~ng~C~~~C~~~~~~~~~C~-C~~g~~l 297 (628)
T 4a0p_A 223 TDWSRRSIERANKTSGQNRTI---IQGHLDYVMDILVFHSSRQSGWNECA-SSNGHCSHLCLAVPVGGFVCG-CPAHYSL 297 (628)
T ss_dssp EETTTTEEEEEETTTCCSCEE---EECSCCSCCEEEEECGGGSCCCCTTT-TTGGGCSSEEEEETTTEEEEE-CSTTCEE
T ss_pred ecCCCCEEEEEECCCCCceEE---EecCCCCcceeeeeeecccccceEec-cCCCCcchhhhcCCCCCeeEE-cCCCcEe
Confidence 554 78898888766654322 22211111122111 000 001122223333222222222 2222211
Q ss_pred EEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCC-EEEee-eccceEEEEEEec
Q 047837 397 LWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGS-TLLLD-AHDAEILSLSFSL 474 (882)
Q Consensus 397 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~-~~~~~v~~~~~~~ 474 (882)
-.|-. .+. +. ...++.. ....++.+.+..... ...+. ..-..+..++|.+
T Consensus 298 ~~d~~--~C~-------------~~-~~~Ll~s------------~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~ 349 (628)
T 4a0p_A 298 NADNR--TCS-------------AP-TTFLLFS------------QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDP 349 (628)
T ss_dssp CTTSS--CEE-------------CC-SSEEEEE------------ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEET
T ss_pred cccCC--cCc-------------cc-cceeeee------------ccceEEEEecccccCceEEEEehhcCCceEEEEec
Confidence 11111 000 00 0011100 011122221111110 01111 1224567788887
Q ss_pred CCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec------CCCCEEEEEEccCCCEEE-EEeCCCeEEEE
Q 047837 475 SSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD------HSAAVTAVKFTCNGRKIL-SCSADRSLVVR 547 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~------h~~~v~~~~~s~~~~~l~-s~~~dg~i~vw 547 (882)
... .++.+=...+.|+.++.... .....+.. ....+..+++...++.|. +-+..+.|.+.
T Consensus 350 ~~~------------~iy~sD~~~~~I~r~~~~g~-~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~ 416 (628)
T 4a0p_A 350 LDK------------QLYWIDSRQNMIRKAQEDGS-QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVT 416 (628)
T ss_dssp TTT------------EEEEEETTTTEEEEEETTSC-SCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCC------------eEEEEecCcceEEEEEcCCC-CceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEE
Confidence 654 13444445677888887643 22222222 234688999998766554 66677889999
Q ss_pred eCccCccceeeeccceecccCCceEEEEEecC-CCEEEEEeCCC--cEEEEEccCCceEEEEEeccCCCCcEEEEECCCC
Q 047837 548 DVVETNSAYKISRRHQQLASQGTVYDMDIDPT-MEVVITVGQDK--KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG 624 (882)
Q Consensus 548 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg 624 (882)
++.. .....+... ......++++.|. |.++.+-.... .|...++. |.....+. ...-..++.+++++++
T Consensus 417 ~~~G-~~~~~l~~~-----~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~-~~~l~~P~gla~D~~~ 488 (628)
T 4a0p_A 417 RLDG-RSVGVVLKG-----EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLF-FSGLSKPIALALDSRL 488 (628)
T ss_dssp ETTS-CEEEEEEEC-----TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEE-CSSCSCEEEEEEETTT
T ss_pred ECCC-CeEEEEEeC-----CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEE-eccCCCccEEEEeCCC
Confidence 8863 222222211 1246889999994 54444433332 56666765 44444443 1345678999999987
Q ss_pred CEEEEEe-CCCcEEEEEccCCeEEEEEc-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 625 SYLVCSY-SNKSICLYDFISGEMVAKAM-GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 625 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
+.|..+. ..+.|...++... ....+. .......+|+... +....+=.....|...|..++....
T Consensus 489 ~~LYw~D~~~~~I~~~~~dG~-~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 489 GKLFWADSDLRRIESSDLSGA-NRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred CEEEEEeCCCCEEEEEeCCCC-ceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcE
Confidence 7776554 4578999998543 333333 3345567888754 4444444466778778776655443
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=2.3e-09 Score=113.42 Aligned_cols=290 Identities=10% Similarity=0.003 Sum_probs=177.9
Q ss_pred ceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEee----------CCCcEEEEec
Q 047837 331 HSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCS----------ADGTIRLWDL 400 (882)
Q Consensus 331 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~----------~dg~i~vwd~ 400 (882)
+.|.++|..+.+....... + ..+ .++++ +++++++++. .++.|.++|.
T Consensus 99 ~~VsVID~~t~~vv~~I~v--G-----------------~~P--gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG--G-----------------FLP--HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE--C-----------------SSC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CeEEEEECCCCEEEEEEEC--C-----------------CCC--ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 7999999988765443221 1 112 57777 7888877765 3678999999
Q ss_pred CCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCc
Q 047837 401 ALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDD 480 (882)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (882)
.+.+.+.+...+... +. ........+.++|+++
T Consensus 157 ~t~~vv~~I~v~g~~----------------------------------------r~----~~g~~P~~~~~spDGk--- 189 (426)
T 3c75_H 157 VTFLPIADIELPDAP----------------------------------------RF----LVGTYQWMNALTPDNK--- 189 (426)
T ss_dssp TTCCEEEEEEETTCC----------------------------------------CC----CBSCCGGGSEECTTSS---
T ss_pred CCCcEEEEEECCCcc----------------------------------------cc----ccCCCcceEEEcCCCC---
Confidence 988776543221000 00 0000011234445544
Q ss_pred cceeccCCceEEEEEcC--CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCC-CEEEEEeCCCeEEEEeCccCcccee
Q 047837 481 VLEEVTDSHYFLASGGR--DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNG-RKILSCSADRSLVVRDVVETNSAYK 557 (882)
Q Consensus 481 ~~~~~~~~~~~l~~g~~--dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~ 557 (882)
+++++.. ++.|.+.|+.+. +.+..+.-.. . ....|++ +.+++.+.||.+.+.+...+.....
T Consensus 190 ----------~lyV~n~~~~~~VsVID~~t~-kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 190 ----------NLLFYQFSPAPAVGVVDLEGK-TFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp ----------EEEEEECSSSCEEEEEETTTT-EEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred ----------EEEEEecCCCCeEEEEECCCC-eEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 5666553 578999999987 5666655321 1 2333433 5566677788777777743332211
Q ss_pred eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceE--EEEEecc--------CCCCcEEEEECCCCCEE
Q 047837 558 ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLI--RSFKQAK--------DFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~--------~~~~v~~~~~spdg~~l 627 (882)
.. .............+.|.+++..++.....+.|.+.|+..+... ..+.... .......++++||++.+
T Consensus 255 ~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rl 333 (426)
T 3c75_H 255 NT-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRI 333 (426)
T ss_dssp EC-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEE
T ss_pred ee-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEE
Confidence 10 0000000011124578999988877788899999998755422 1111000 01222347899999877
Q ss_pred EEEeC----------CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCCCCCCcccCCC
Q 047837 628 VCSYS----------NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCK-HIVSVG-GDGLQRVKEKYGILPPRNFAQP 695 (882)
Q Consensus 628 ~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 695 (882)
.+... ++.|.+.|+.+++.+.++... .....|.|+|||+ +|+++. .++.|.++|+.+.+....+...
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~v 412 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQL 412 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCC
Confidence 76542 357999999999999988642 3578999999999 888887 5999999999999888776333
Q ss_pred CCcccEEEecC
Q 047837 696 AALSPIIFCEE 706 (882)
Q Consensus 696 ~~~~~~~~s~~ 706 (882)
..-..++.+++
T Consensus 413 G~~P~~i~~~~ 423 (426)
T 3c75_H 413 GRGPQIITTHD 423 (426)
T ss_dssp SSSCCEEECCC
T ss_pred CCCCcEEEcCC
Confidence 33334555553
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=3.5e-09 Score=110.26 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=144.3
Q ss_pred ceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcC
Q 047837 374 SCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSS 453 (882)
Q Consensus 374 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 453 (882)
.+.+|++.++.++++...++.|..||..+++...
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------------------------------- 85 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV---------------------------------------------- 85 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----------------------------------------------
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------------------------
Confidence 3456663446677777778899999987654210
Q ss_pred CCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeec----CCCCEEEEEEc
Q 047837 454 RGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDD----HSAAVTAVKFT 529 (882)
Q Consensus 454 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~----h~~~v~~~~~s 529 (882)
+ .....+.++++++++. ++++. .+ .|.+||..++ ........ ....+.+++++
T Consensus 86 ------~-~~~~~v~~i~~~~dg~-------------l~v~~-~~-gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~d 142 (326)
T 2ghs_A 86 ------H-ALPFMGSALAKISDSK-------------QLIAS-DD-GLFLRDTATG-VLTLHAELESDLPGNRSNDGRMH 142 (326)
T ss_dssp ------E-ECSSCEEEEEEEETTE-------------EEEEE-TT-EEEEEETTTC-CEEEEECSSTTCTTEEEEEEEEC
T ss_pred ------E-ECCCcceEEEEeCCCe-------------EEEEE-CC-CEEEEECCCC-cEEEEeeCCCCCCCCCCCCEEEC
Confidence 0 1123566777777765 45443 44 4999998765 32222111 12358899999
Q ss_pred cCCCEEEEEeC------CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcc--CC
Q 047837 530 CNGRKILSCSA------DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV-GQDKKINSFSIA--AG 600 (882)
Q Consensus 530 ~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~--~~ 600 (882)
|+|+++++... .+.|..++ + .....+.. .......++|+|+++.++.+ ..++.|.+||+. ++
T Consensus 143 ~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~~~------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 143 PSGALWIGTMGRKAETGAGSIYHVA--K-GKVTKLFA------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEE--T-TEEEEEEE------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred CCCCEEEEeCCCcCCCCceEEEEEe--C-CcEEEeeC------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 99997775542 24455555 2 22222211 11356789999999877555 456899999986 55
Q ss_pred -ceE--EEEE-eccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEEC-CCCCEEEEEe
Q 047837 601 -KLI--RSFK-QAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFL-PDCKHIVSVG 673 (882)
Q Consensus 601 -~~~--~~~~-~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~s~~ 673 (882)
+.. ..+. .......+..++++++|.++++...++.|.+||. +++.+..+..+...+++++|+ +|++.|+.++
T Consensus 214 l~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 214 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 321 2221 1123456788999999998888777789999998 678788887777789999998 8888775554
No 217
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.27 E-value=2.8e-06 Score=95.65 Aligned_cols=516 Identities=12% Similarity=0.067 Sum_probs=261.9
Q ss_pred eEEEeeceEEEEEECCCCc-eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee-eEEeecccccee
Q 047837 15 KCAYVAGCVLVVYDVDSST-QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF-ISELKGHLYGVE 92 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~-~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~-~~~l~~h~~~V~ 92 (882)
.+++...+.|.+.|+.... ....+...- +...+++|++.+..|..+.. ..+.|..+++..... ...+........
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~--~~~~~ld~~~~~~~ly~sD~-~~~~I~r~~~~g~~~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGL--EDAAAVDFVFSHGLIYWSDV-SEEAIKRTEFNKTESVQNVVVSGLLSPD 87 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCC--SCEEEEEEETTTTEEEEEET-TTTEEEEEEC-----CEEEECSSCSCEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCC--CceEEEEEEeCCCEEEEEEC-CCCeEEEEEccCCCceEEEEeCCCCCcC
Confidence 6888889999999998654 222222222 57899999998888887764 356899999876532 233333335788
Q ss_pred EEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEcccCcccee
Q 047837 93 CIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIGSSATART 166 (882)
Q Consensus 93 ~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~~~~~~~~ 166 (882)
.||+.+.++.|..++ +.|.+.++........+.... .....|++.|.+..|..+.- ..|...+++.... .
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l--~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--~ 163 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL--DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--F 163 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--E
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC--CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--E
Confidence 999999888777776 899999986543322222222 56789999997655554432 3444444443221 0
Q ss_pred ccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeee
Q 047837 167 RLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNG 246 (882)
Q Consensus 167 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 246 (882)
.. ... ......+
T Consensus 164 ~l------------------------------------------------------------~~~--------~~~~P~G 175 (619)
T 3s94_A 164 II------------------------------------------------------------INS--------EIYWPNG 175 (619)
T ss_dssp EE------------------------------------------------------------ECS--------SCSSEEE
T ss_pred EE------------------------------------------------------------EeC--------CCCCCcE
Confidence 00 000 0112378
Q ss_pred EEEecCCCEEEEEe-cCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEE
Q 047837 247 FALSASSKLIACAC-SNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLV 325 (882)
Q Consensus 247 ~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll 325 (882)
+++++++..|+.+. ..+.|..++++..... .+. .+ ......++++..+ .++
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~-------~~-------------------~~~~P~gi~~~~~-~ly 227 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVV-------KG-------------------SLPHPFALTLFED-ILY 227 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------------CCCEEESSS-EEE
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEE-------eC-------------------CCCCceEEEEeCC-EEE
Confidence 99999877776664 4577888887643221 111 00 0011124555555 555
Q ss_pred EEe-CCceEEEEEcccccccceeeeeecCcceeeeecccC---CCCCC------CCCcceeeeccCCCcEEEEeeCCCcE
Q 047837 326 VVY-GDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLG---CENMH------DPSVSCVARGCTGGVSFSTCSADGTI 395 (882)
Q Consensus 326 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~h------~~~v~~~~~~~~~~~~l~t~~~dg~i 395 (882)
.+. ..+.|...|..+++.... +.........+.... ...+. .+....+++..+........+.+|..
T Consensus 228 ~td~~~~~V~~~d~~tg~~~~~---i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~ 304 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEGLRE---IHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK 304 (619)
T ss_dssp EECTTTCSEEEEESSSCCCCEE---CCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCC
T ss_pred EecCCCCEEEEEECCCCcccEE---EecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchhe
Confidence 554 378888888876654322 111111111221110 00000 11111222221111111111122211
Q ss_pred EEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCC-EEEee-eccceEEEEEEe
Q 047837 396 RLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGS-TLLLD-AHDAEILSLSFS 473 (882)
Q Consensus 396 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~-~~~~~v~~~~~~ 473 (882)
..-| ...+ .......+ +......++.+.+.+... ...+. ..-..+.+++|.
T Consensus 305 l~~d--~~~C-------------~~~~~~~L------------l~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d 357 (619)
T 3s94_A 305 LLEN--GKTC-------------KDGATELL------------LLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYD 357 (619)
T ss_dssp BCTT--SSCB-------------CSSCSEEE------------EEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEE
T ss_pred eccc--Cccc-------------CCCCceEE------------EEEcccceEEEecCCCccceeEEeccccCccEEEEEE
Confidence 0000 0000 00000001 111112233333333221 11111 112346678888
Q ss_pred cCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCC-EEEEEeCCCeEEEEeCccC
Q 047837 474 LSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGR-KILSCSADRSLVVRDVVET 552 (882)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~ 552 (882)
+... .++.+-...+.|+.+++... .....+...-.....+++...+. ...+-+..+.|.+.++...
T Consensus 358 ~~~~------------~ly~sD~~~~~I~r~~~~g~-~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 358 PVEG------------YIYWTDDEVRAIRRSFIDGS-GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp TTTT------------EEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cCCC------------eEEEEeCCCCeEEEEEcCCC-ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 7544 24445556778888888653 22223333335677899987444 4555566788999988743
Q ss_pred ccceeeeccceecccCCceEEEEEecCCCEEEEEeC--CCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEE
Q 047837 553 NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ--DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS 630 (882)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 630 (882)
. ...+... .-....++++.|....|..+.. ...|...++. |.....+. ...-..+..+++++++..|..+
T Consensus 425 ~-~~~l~~~-----~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~-~~~l~~P~GlalD~~~~~LY~a 496 (619)
T 3s94_A 425 M-RKILISE-----DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLV-NTSLGWPNGLALDYDEGKIYWG 496 (619)
T ss_dssp S-CEEEECT-----TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE-CSSCSCEEEEEEETTTTEEEEE
T ss_pred e-EEEEEEC-----CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEE-eCCCCCCeeeEEcccCCEEEEE
Confidence 2 2222211 1246789999997555544442 3567777765 44333333 2345678999999977666655
Q ss_pred e-CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCC
Q 047837 631 Y-SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVG-GDGLQRVKEKYGI 686 (882)
Q Consensus 631 ~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~~~ 686 (882)
. ..+.|..+++........+........+|+...+ +|+.+. ..+.|..-|..++
T Consensus 497 D~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 497 DAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp ETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred ECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence 4 4568888988543322222222223345565433 454444 4556666666554
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=4.9e-09 Score=107.59 Aligned_cols=229 Identities=10% Similarity=0.059 Sum_probs=151.9
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCC
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADR 542 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 542 (882)
+..--....|+++.. .++++...++.|+.||..++.. ..+ .....+.+++++++|+++++ . +.
T Consensus 11 ~~~~~Egp~w~~~~~------------~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~ 73 (297)
T 3g4e_A 11 NCRCGESPVWEEVSN------------SLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GT 73 (297)
T ss_dssp CCSBEEEEEEETTTT------------EEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TT
T ss_pred CCccccCCeEECCCC------------EEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CC
Confidence 334455677777543 2677777889999999987532 222 24567999999999995554 4 45
Q ss_pred eEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC---------CcEEEEEccC-CceEEEEEeccCC
Q 047837 543 SLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD---------KKINSFSIAA-GKLIRSFKQAKDF 612 (882)
Q Consensus 543 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------~~v~iwd~~~-~~~~~~~~~~~~~ 612 (882)
.|.+||..++... .+.... .......+.+++++|+|+++++...+ ..-.+|.+.. ++... +. ...
T Consensus 74 ~l~~~d~~~g~~~-~~~~~~-~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~--~~~ 148 (297)
T 3g4e_A 74 KFCALNWKEQSAV-VLATVD-NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF--DQV 148 (297)
T ss_dssp EEEEEETTTTEEE-EEEECC-TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE--EEE
T ss_pred eEEEEECCCCcEE-EEEecC-CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee--ecc
Confidence 6999998755422 221111 01112468899999999977755322 2345555543 44333 22 234
Q ss_pred CCcEEEEECCCCCEEE-EEeCCCcEEEEEc--cCCeE-----EEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 047837 613 GDPMKVTVDPSGSYLV-CSYSNKSICLYDF--ISGEM-----VAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 613 ~~v~~~~~spdg~~l~-~~~~dg~i~iwd~--~~~~~-----~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
.....++|+||++.|. +.+.++.|.+||+ .+|+. +..+..+......+++.++|++.++....+.|..||..
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 4578999999998765 5556789999997 45543 22333344678899999999988888888899999998
Q ss_pred CCCCCcccCCC-CCcccEEEe-cCCCeEEEe
Q 047837 685 GILPPRNFAQP-AALSPIIFC-EEEDQKCRM 713 (882)
Q Consensus 685 ~~~~~~~~~~~-~~~~~~~~s-~~~~~~~~~ 713 (882)
+++....+..+ ..+..++|. ++.+.+...
T Consensus 229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp TCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred CceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 77766666555 456778888 555544433
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1.8e-09 Score=115.80 Aligned_cols=261 Identities=11% Similarity=0.021 Sum_probs=154.3
Q ss_pred CCCccccCCCCCeEEEee-ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee
Q 047837 3 PNHNIKKPDSSSKCAYVA-GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI 81 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~-~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~ 81 (882)
|.++++.|++. .++.-. ++.|.+||.++++........ .... ++|+|++++|+++..+....|.+|+..++...
T Consensus 133 P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 133 MWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp EEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC---CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred ceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC---CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 56788998875 322222 369999999988876665432 3334 99999999998886532338999998876554
Q ss_pred EEe----eccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeee----eecCCcccceeEEEEccCCCEEEEE-CC
Q 047837 82 SEL----KGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMK----LKANSSCSAITSACFSSDAKFIVTA-GK 150 (882)
Q Consensus 82 ~~l----~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~----~~~~~~~~~v~~l~fs~d~~~l~~~-~~ 150 (882)
..+ ..+...+.+++++|++..|..++ +.|+.||..++..... ........+...++|+|++..|..+ ..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 444 22556788999999544454466 8999999987764322 1111100111399999964444444 33
Q ss_pred -CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEE
Q 047837 151 -KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIV 229 (882)
Q Consensus 151 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~ 229 (882)
+.|+.|+...... .+.++.... +.. +|
T Consensus 288 ~~~I~~~~~~g~~~----------~~~g~~~~~--g~~-----------------------------------dg----- 315 (409)
T 3hrp_A 288 LSSVYKITPDGECE----------WFCGSATQK--TVQ-----------------------------------DG----- 315 (409)
T ss_dssp TTEEEEECTTCCEE----------EEEECTTCC--SCB-----------------------------------CE-----
T ss_pred CCEEEEEecCCCEE----------EEEeCCCCC--CcC-----------------------------------CC-----
Confidence 6788888754311 011110000 000 00
Q ss_pred ccCceeeeEeeceeeeeEEEecCCCEEEEEe-cCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCC
Q 047837 230 HSGLSVTKSVDLKVKNGFALSASSKLIACAC-SNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTP 308 (882)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (882)
......+....+++++++|+++++-. .++.|+.|++.+++.......... .+.... .....
T Consensus 316 -----~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~---~g~~~g----------~~~~~ 377 (409)
T 3hrp_A 316 -----LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV---ASQIDG----------TPLEA 377 (409)
T ss_dssp -----EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC---BSCCCB----------STTTC
T ss_pred -----cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC---CCcCCC----------Chhce
Confidence 00000112237899999999777777 789999999877754322110000 000000 00112
Q ss_pred CCCCcEEEeecCCCeEEEEeC-CceEEEEEc
Q 047837 309 TIPNAIACQFSTSEKLVVVYG-DHSLYVWDI 338 (882)
Q Consensus 309 ~~~~~~~~~~s~~~~ll~~~~-d~~i~iwd~ 338 (882)
.......++++++|.++++.. ++.|+.+++
T Consensus 378 ~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 378 TFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 234567899999998777765 778887765
No 220
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.23 E-value=3.3e-09 Score=110.10 Aligned_cols=222 Identities=16% Similarity=0.135 Sum_probs=146.7
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEE-------EcCCCcEEEEEcCCCceeEEEee----cCCCCEEEEEEccC-C
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLAS-------GGRDRTIHLYDVKRNFDLIESID----DHSAAVTAVKFTCN-G 532 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-------g~~dg~v~iwd~~~~~~~~~~~~----~h~~~v~~~~~s~~-~ 532 (882)
.....++|++++. ++++ +..++.|.+||..++ +...... ++...+..++++++ +
T Consensus 18 ~~~~~~~~~~~g~-------------l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g 83 (314)
T 1pjx_A 18 PGAEGPVFDKNGD-------------FYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDAN 83 (314)
T ss_dssp TTCEEEEECTTSC-------------EEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSS
T ss_pred CCccCceECCCCC-------------EEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCC
Confidence 3445677776665 5666 466788999998765 2222111 24567899999999 7
Q ss_pred CEEEEEeCCCeEEEEeCccCccceee-eccceecccCCceEEEEEecCCCEEEEEeCC---------------CcEEEEE
Q 047837 533 RKILSCSADRSLVVRDVVETNSAYKI-SRRHQQLASQGTVYDMDIDPTMEVVITVGQD---------------KKINSFS 596 (882)
Q Consensus 533 ~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------------~~v~iwd 596 (882)
+++++.. .+.|.+||.. ++. ..+ .... .......+.+++++++|+++++...+ +.|..||
T Consensus 84 ~l~v~~~-~~~l~~~d~~-g~~-~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 84 QLFVADM-RLGLLVVQTD-GTF-EEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp EEEEEET-TTEEEEEETT-SCE-EECCSBCT-TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred cEEEEEC-CCCEEEEeCC-CCE-EEEEeccC-CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 6555554 4468899987 432 222 1110 00112358899999999988877655 5677777
Q ss_pred ccCCceEEEEEeccCCCCcEEEEEC----CCCCEEEEE-eCCCcEEEEEcc-CCe-----EEEEEccCC-CCeEEEEECC
Q 047837 597 IAAGKLIRSFKQAKDFGDPMKVTVD----PSGSYLVCS-YSNKSICLYDFI-SGE-----MVAKAMGHG-EVITGVTFLP 664 (882)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~v~~~~~s----pdg~~l~~~-~~dg~i~iwd~~-~~~-----~~~~~~~h~-~~v~~l~~s~ 664 (882)
.. ++...... +...+..++|+ |+++.|..+ ..++.|.+||.. +++ .+..+.++. ..+..+++++
T Consensus 160 ~~-g~~~~~~~---~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 160 TD-GQMIQVDT---AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp TT-SCEEEEEE---EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred CC-CCEEEecc---CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 66 55443332 33456889999 999765544 567899999986 454 233344444 6688999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCcccCCC-CCcccEEEecCCC
Q 047837 665 DCKHIVSVGGDGLQRVKEKYGILPPRNFAQP-AALSPIIFCEEED 708 (882)
Q Consensus 665 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~s~~~~ 708 (882)
+|+++++...++.|.+||..++.....+..+ .....+.|++++.
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence 9999988888899999998855555444333 3455667766665
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=5.1e-10 Score=116.56 Aligned_cols=250 Identities=9% Similarity=-0.040 Sum_probs=153.0
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec--------CCCCeEEEEECCCceeeEEeecc-------
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES--------GPQPAVLVWDCANLAFISELKGH------- 87 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~--------~~d~~I~vwd~~t~~~~~~l~~h------- 87 (882)
.|.++|.++++.+..+..-. .+ .+++||||++++++.. ..++.|.+||+.+++.+.++.-+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCC--CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 88999999999998886554 45 7999999999999862 12568999999999999998643
Q ss_pred ccceeEEEECCCCCEEEEEc----CEEEE--EEcCcceeeeeeecCCcccceeEEEEccCCC--EEEEECCCcEEEEEcc
Q 047837 88 LYGVECIAFSPDGEHLVTVG----GYIYL--WNWRSAMLVMKLKANSSCSAITSACFSSDAK--FIVTAGKKHLKFWTIG 159 (882)
Q Consensus 88 ~~~V~~lafspdg~~Las~~----~~i~i--Wd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~--~l~~~~~~~i~iwd~~ 159 (882)
......++|||||++|+.+. ..|.+ +|+.+ +.++.... . ..+.|+++ +++.+.++.+.+.+++
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~---~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS---C---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS---C---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC---c---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 13467899999999998875 57888 99888 45554331 1 11234443 3333345666667776
Q ss_pred c-----CccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCce
Q 047837 160 S-----SATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLS 234 (882)
Q Consensus 160 ~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~ 234 (882)
. ++..... . ..+.....|. ....+. .++..+. +.+..++....
T Consensus 194 ~~~~~~~~v~~~~--t--~~i~vg~~P~--~~~~~~-------------------------~~~~vs~-~~V~viD~~~~ 241 (368)
T 1mda_H 194 AAPAAAGIVGAQC--T--GAQNCSSQAA--QANYPG-------------------------MLVWAVA-SSILQGDIPAA 241 (368)
T ss_dssp SSCCCCEECCCCS--C--TTSCBCSCCE--EETTTT-------------------------EEEECBS-SCCEEEECCSS
T ss_pred cccccCCeEEEEe--e--eeeeCCCCcc--ccccCC-------------------------EEEEEcC-CEEEEEECCCC
Confidence 5 2221000 0 0000001111 000011 1111222 33444433210
Q ss_pred ---eeeEee------------ceeeeeEEEecCCCEEEEEec-C--------CeEEeeecccceecccccccCcccCCCC
Q 047837 235 ---VTKSVD------------LKVKNGFALSASSKLIACACS-N--------GAVHLFDIQSLKHAGTLHYSEAKKCNGE 290 (882)
Q Consensus 235 ---~~~~~~------------~~~~~~~~~s~d~~~l~~~~~-d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~ 290 (882)
....+. ......++|+||+++++++.. + +.+.++|+.+++.+.++....
T Consensus 242 ~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------- 314 (368)
T 1mda_H 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------- 314 (368)
T ss_dssp CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-------
T ss_pred cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-------
Confidence 111000 001122789999999887644 2 356699999998887765221
Q ss_pred CccccchhhhccccccCCCCCCcEEEeecCCCe-E-EEEe-CCceEEEEEcccccccc
Q 047837 291 NDTVSTAKATELYFKLTPTIPNAIACQFSTSEK-L-VVVY-GDHSLYVWDIHDVNEAT 345 (882)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-l-l~~~-~d~~i~iwd~~~~~~~~ 345 (882)
....++|++||+ + ++.. .++.|.++|+.+.+...
T Consensus 315 ---------------------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 315 ---------------------DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp ---------------------EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred ---------------------CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 234799999996 4 4455 48999999998876543
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=1.6e-10 Score=120.43 Aligned_cols=179 Identities=9% Similarity=0.014 Sum_probs=134.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeCccCcccee-----eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 522 AVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYK-----ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
.+..+++++...++++++.++ +.+|++........ .. ......... |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~-~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT-FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC-CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc-ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999986 77798764331000 11 111122345 999999 89999998 889999999
Q ss_pred ccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCC
Q 047837 597 IAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDG 676 (882)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg 676 (882)
+.+........ .+...+..+.+.+.. +|++..||.|.+||+.+++... +...|++++|||+| ++.+..||
T Consensus 113 v~sl~~~~~~~--~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 113 LEELSEFRTVT--SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp SSSTTCEEEEE--ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred chhhhccCccc--eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence 98877655555 566778888777653 8888999999999999887653 45689999999999 67899999
Q ss_pred eEEEEeCCCCCC--Cccc----------CCCCCcccEEEecCCCeEEEeccc
Q 047837 677 LQRVKEKYGILP--PRNF----------AQPAALSPIIFCEEEDQKCRMDSV 716 (882)
Q Consensus 677 ~i~vwd~~~~~~--~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~ 716 (882)
.+++|+..+... ...+ .+...+..+.+.++..+++.....
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence 999998877653 2223 245566778888888777766544
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.19 E-value=4.3e-09 Score=121.96 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=115.7
Q ss_pred CcEEEEEcCCCce---eEEEeec-CCCCEEEEEEccCCCEEEEEeC----CCeEEEEeCccCccceeeeccceecccCCc
Q 047837 499 RTIHLYDVKRNFD---LIESIDD-HSAAVTAVKFTCNGRKILSCSA----DRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 499 g~v~iwd~~~~~~---~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
..|++|++.+... ++..... |...+..+.|+|||++|+.... +..|+++|+.++.......... ...
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-----~~~ 282 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-----LDA 282 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-----SSS
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-----CCc
Confidence 4599999887532 2323333 4556789999999999865432 3589999997654222222111 123
Q ss_pred eEEEEEecCCCEEEEEe-CC---CcEEEEEccCCce--EEEEEeccCCCCcEEEEECCCCCEEEEEeCCC---cEEEEEc
Q 047837 571 VYDMDIDPTMEVVITVG-QD---KKINSFSIAAGKL--IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK---SICLYDF 641 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~-~d---~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg---~i~iwd~ 641 (882)
.... ++++|..|+..+ .+ +.|..+|+.++.. ...+. .+...+. .|++++++|+....++ .|++||+
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 3343 667776655444 33 5799999987654 34554 4545554 8999999887765543 6899998
Q ss_pred cCCeEEEEEc-cCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeCCCCC
Q 047837 642 ISGEMVAKAM-GHGEVITGVTFLPDCKHIVSVGGD----GLQRVKEKYGIL 687 (882)
Q Consensus 642 ~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~d----g~i~vwd~~~~~ 687 (882)
..+. ...+. .+.+.+..+.++++++.|+....+ +.+..||+.++.
T Consensus 358 ~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 358 EGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 7554 44443 244567788888898877665544 789999987654
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=3.2e-08 Score=105.58 Aligned_cols=314 Identities=13% Similarity=0.060 Sum_probs=186.6
Q ss_pred CCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCc
Q 047837 252 SSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDH 331 (882)
Q Consensus 252 d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~ 331 (882)
++..|++++.++.|..+|.++|+.+-+........... .....+.+.....++.+++++.++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~v~~~~g 113 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFS------------------KEPALLSGGVTVSGGHVYIGSEKA 113 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCS------------------CCCCCEEEEEEEETTEEEEEETTS
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccccc------------------ccCcccccCceEeCCEEEEEcCCC
Confidence 46678888889999999999988765544211100000 001111122233467888899999
Q ss_pred eEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeeccc
Q 047837 332 SLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVL 411 (882)
Q Consensus 332 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 411 (882)
.|+.+|.++++..... .... . ....... .+..++.++.++.|..+|..+++.+.+...
T Consensus 114 ~l~a~d~~tG~~~W~~---~~~~-~---------------~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 114 QVYALNTSDGTVAWQT---KVAG-E---------------ALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp EEEEEETTTCCEEEEE---ECSS-C---------------CCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEECCCCCEEEEE---eCCC-c---------------eEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 9999999887543221 1110 0 0011111 234677788899999999998887654322
Q ss_pred CCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceE
Q 047837 412 GHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYF 491 (882)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 491 (882)
..... ........+ .. + . .
T Consensus 172 ~~~~~------------------------------------------~~~~~~~~~----~~-~-~-------------~ 190 (376)
T 3q7m_A 172 DMPSL------------------------------------------SLRGESAPT----TA-F-G-------------A 190 (376)
T ss_dssp CC-----------------------------------------------CCCCCCE----EE-T-T-------------E
T ss_pred CCCce------------------------------------------eecCCCCcE----EE-C-C-------------E
Confidence 11000 000000000 00 1 1 5
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEeecCCC-------CEEEEEEcc--CCCEEEEEeCCCeEEEEeCccCccceeeeccc
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSA-------AVTAVKFTC--NGRKILSCSADRSLVVRDVVETNSAYKISRRH 562 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~-------~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 562 (882)
++.+..++.+..+|..++ +.+-....... .+..+...| .+..++.++.++.+..+|..+++.......
T Consensus 191 v~~g~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-- 267 (376)
T 3q7m_A 191 AVVGGDNGRVSAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 267 (376)
T ss_dssp EEECCTTTEEEEEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--
T ss_pred EEEEcCCCEEEEEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--
Confidence 777888889999998876 33333221110 000011111 356777888899999999987765544321
Q ss_pred eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 047837 563 QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFI 642 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~ 642 (882)
.....+.. ++..++.++.++.|..+|..+|+.+..... .....+..... .+..|++++.+|.|+++|..
T Consensus 268 ------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 268 ------GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD-LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp ------CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT-TTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred ------CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc-cCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence 12333333 366788888999999999999998776641 11122223333 25678888899999999999
Q ss_pred CCeEEEEEccCCCCeEE-EEECCCCCEEEEEeCCCeEEEEe
Q 047837 643 SGEMVAKAMGHGEVITG-VTFLPDCKHIVSVGGDGLQRVKE 682 (882)
Q Consensus 643 ~~~~~~~~~~h~~~v~~-l~~s~d~~~l~s~~~dg~i~vwd 682 (882)
+|+.+.........+.. ... .+..|+.++.+|.|..|+
T Consensus 337 tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 337 DGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 99998877653333332 222 245778899999999887
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=1.7e-08 Score=115.58 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=113.4
Q ss_pred cEEEEEcCCCceeEEEeec--CC-------CCEEEEEEccCC---CEEEEEeCCCeEEEEeCccCccceeeeccceec--
Q 047837 500 TIHLYDVKRNFDLIESIDD--HS-------AAVTAVKFTCNG---RKILSCSADRSLVVRDVVETNSAYKISRRHQQL-- 565 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~~--h~-------~~v~~~~~s~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-- 565 (882)
.|..+|..++ +.+-.++. |. ....-+....+| ..++.++.+|.++++|..+++............
T Consensus 284 sv~AlD~~TG-~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 284 SIVALDPDTG-KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp EEEEECTTTC-CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEECCCC-CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 4888888877 34333322 21 122233344477 678899999999999999887765543211000
Q ss_pred ---ccC------------------------CceEEEEEecCCCEEEEEeCC-----------------------------
Q 047837 566 ---ASQ------------------------GTVYDMDIDPTMEVVITVGQD----------------------------- 589 (882)
Q Consensus 566 ---~~~------------------------~~v~~~~~sp~~~~l~~~~~d----------------------------- 589 (882)
... ..-..++|+|+..++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 000 001257899998888775432
Q ss_pred --------------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCC-
Q 047837 590 --------------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHG- 654 (882)
Q Consensus 590 --------------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~- 654 (882)
+.|..||+.+++.+..+. +...+....+..++.+++.++.||.+++||.++|+.+..+....
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE---HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEE---ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecC---CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 679999999999998886 23344555677788899999999999999999999999887432
Q ss_pred CCeEEEEECCCCCEEEEE
Q 047837 655 EVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 655 ~~v~~l~~s~d~~~l~s~ 672 (882)
....-+.|..+|+.++..
T Consensus 520 ~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CCSCCEEEEETTEEEEEE
T ss_pred cccCCEEEEeCCEEEEEE
Confidence 333446677888755443
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=1e-08 Score=117.72 Aligned_cols=188 Identities=8% Similarity=0.061 Sum_probs=130.9
Q ss_pred EEEEccCCCEEEEEeCCCe-------------------EEEEeCccCccceeeecccee-cc--cCCceEEEEEecCCC-
Q 047837 525 AVKFTCNGRKILSCSADRS-------------------LVVRDVVETNSAYKISRRHQQ-LA--SQGTVYDMDIDPTME- 581 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~-~~--~~~~v~~~~~sp~~~- 581 (882)
.++++|++..++.++.++. |..+|..+++........+.. .. ............+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5788888889998888764 999999998877665433211 00 111222223333565
Q ss_pred --EEEEEeCCCcEEEEEccCCceEEEEEeccC-------------------------------------CCCcEEEEECC
Q 047837 582 --VVITVGQDKKINSFSIAAGKLIRSFKQAKD-------------------------------------FGDPMKVTVDP 622 (882)
Q Consensus 582 --~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------------------------------------~~~v~~~~~sp 622 (882)
.++.++.+|.++++|.++|+++........ ...-..++|+|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 788899999999999999999855431110 00112378999
Q ss_pred CCCEEEEEeC---------------------------------------------CCcEEEEEccCCeEEEEEccCCCCe
Q 047837 623 SGSYLVCSYS---------------------------------------------NKSICLYDFISGEMVAKAMGHGEVI 657 (882)
Q Consensus 623 dg~~l~~~~~---------------------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v 657 (882)
+..++++... +|.|+.||+.+|+.+-++..+. ++
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 477 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IF 477 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Cc
Confidence 8888876532 3779999999999988876543 34
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCc--ccEEEecCCCeEEEe
Q 047837 658 TGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAAL--SPIIFCEEEDQKCRM 713 (882)
Q Consensus 658 ~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~ 713 (882)
..-.+...+.+++.++.||.++.||..+++.+..+..+..+ ..+.|+.++...+.+
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTF 535 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEE
Confidence 44456667889999999999999999999998877665443 457777777655444
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=1.3e-08 Score=116.74 Aligned_cols=171 Identities=11% Similarity=0.099 Sum_probs=111.6
Q ss_pred cEEEEEcCCCceeEEEeec--CC-------CCEEEEEEccCCC---EEEEEeCCCeEEEEeCccCccceeeeccceec--
Q 047837 500 TIHLYDVKRNFDLIESIDD--HS-------AAVTAVKFTCNGR---KILSCSADRSLVVRDVVETNSAYKISRRHQQL-- 565 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~~--h~-------~~v~~~~~s~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-- 565 (882)
.|..+|..++ +.+-.++. |. ..+.......+|+ .++.++.+|.++++|..+++............
T Consensus 276 ~v~AlD~~TG-~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 354 (689)
T 1yiq_A 276 SIVAVNADTG-EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK 354 (689)
T ss_dssp EEEEEETTTC-CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred eEEEEEccCC-ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence 4889999887 44433332 21 1222222223665 78899999999999999887653322111000
Q ss_pred --------------------ccC-----------CceEEEEEecCCCEEEEEeC--------------------------
Q 047837 566 --------------------ASQ-----------GTVYDMDIDPTMEVVITVGQ-------------------------- 588 (882)
Q Consensus 566 --------------------~~~-----------~~v~~~~~sp~~~~l~~~~~-------------------------- 588 (882)
... ..-..++|+|+..++++...
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL 434 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence 000 01123789998888776532
Q ss_pred -------------------CCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047837 589 -------------------DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAK 649 (882)
Q Consensus 589 -------------------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~ 649 (882)
++.|+.||+.+|+.+..+.. + .......++..+.++++++.||.++.||.++|+.+.+
T Consensus 435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--C-CCccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 37799999999999988863 2 2333346666788999999999999999999999988
Q ss_pred EccCCC-CeEEEEECCCCCE-EEEEeC
Q 047837 650 AMGHGE-VITGVTFLPDCKH-IVSVGG 674 (882)
Q Consensus 650 ~~~h~~-~v~~l~~s~d~~~-l~s~~~ 674 (882)
++...+ ...-+.|..||+. +++.+.
T Consensus 512 ~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 512 QPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred eeCCCCcccCceEEEECCEEEEEEEec
Confidence 875433 2245677788874 444443
No 228
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.17 E-value=1.5e-05 Score=89.78 Aligned_cols=151 Identities=8% Similarity=-0.078 Sum_probs=92.8
Q ss_pred CccccCCCCCeEEEee--ceEEEEEECCCCce-EEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee
Q 047837 5 HNIKKPDSSSKCAYVA--GCVLVVYDVDSSTQ-SHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI 81 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~--~~~v~vwd~~~~~~-~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~ 81 (882)
+++|++.+. .+.+.. ++.|..++++.... ...+...- .....+|+.+.++.|+.+.. ..+.|.+.++......
T Consensus 44 ~ld~~~~~~-~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~--~~P~GlAvD~~~~~ly~~d~-~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 44 AVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDWLGEKLYWTDS-ETNRIEVSNLDGSLRK 119 (619)
T ss_dssp EEEEETTTT-EEEEEETTTTEEEEEEC-----CEEEECSSC--SCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCE
T ss_pred EEEEEeCCC-EEEEEECCCCeEEEEEccCCCceEEEEeCCC--CCcCeEEEEecCCEEEEEeC-CCCEEEEEECCCCCEE
Confidence 567777654 232222 45788888875532 22222211 56889999998877777754 3679999998754433
Q ss_pred EEeeccccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--CcEEE
Q 047837 82 SELKGHLYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--KHLKF 155 (882)
Q Consensus 82 ~~l~~h~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~i 155 (882)
..+...-.....|++.|.+.+|...+ +.|...++. |.....+-.. .......|+++++++.|..+.. +.|..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~-~~~~P~Glald~~~~~LY~aD~~~~~I~~ 197 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHK 197 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECS-SCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeC-CCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence 33334455678999999877776666 466666654 3333333211 1267899999998777777654 56777
Q ss_pred EEcccC
Q 047837 156 WTIGSS 161 (882)
Q Consensus 156 wd~~~~ 161 (882)
.+++..
T Consensus 198 ~~~dG~ 203 (619)
T 3s94_A 198 SNLDGT 203 (619)
T ss_dssp ESSSCC
T ss_pred ecCCCC
Confidence 777543
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=1.3e-08 Score=104.95 Aligned_cols=189 Identities=15% Similarity=0.185 Sum_probs=125.3
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee---c-CCCCEEEEEEccCCCEEEE--
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID---D-HSAAVTAVKFTCNGRKILS-- 537 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~---~-h~~~v~~~~~s~~~~~l~s-- 537 (882)
...+..++++++++ ++++...++.|.+|+.. + ....... + ....+.+++++++|+++++
T Consensus 85 ~~~~~gl~~d~dG~-------------l~v~~~~~~~v~~~~~~-g-~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~ 149 (305)
T 3dr2_A 85 TAFTNGNAVDAQQR-------------LVHCEHGRRAITRSDAD-G-QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDP 149 (305)
T ss_dssp CSCEEEEEECTTSC-------------EEEEETTTTEEEEECTT-S-CEEEEECEETTEECSCCCCEEECTTSCEEEECC
T ss_pred CCccceeeECCCCC-------------EEEEECCCCEEEEECCC-C-CEEEEEeccCCCccCCCCCEEECCCCCEEEeCc
Confidence 34466677777776 66665566789999875 3 2211111 1 1234678999999998886
Q ss_pred --EeC-------------CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCC------CcEEEEE
Q 047837 538 --CSA-------------DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD------KKINSFS 596 (882)
Q Consensus 538 --~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~iwd 596 (882)
+.. .+.|..||..+++.. .+. . ......++|+||++.|+.+... +.|.+||
T Consensus 150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~~-~------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~ 221 (305)
T 3dr2_A 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RMA-D------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFA 221 (305)
T ss_dssp SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EEE-E------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEE
T ss_pred CCCccccccccccccccCCCeEEEEcCCCCcEE-EEe-c------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEE
Confidence 332 245777776544322 222 1 1356789999999988777665 6899999
Q ss_pred ccCCceE--EEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeC
Q 047837 597 IAAGKLI--RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 597 ~~~~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~ 674 (882)
+..+... ..+. ......+..++++++|++.++. .+ .|.+|+. +++.+..+..+. .+.+++|+++++.|..++.
T Consensus 222 ~~~~~l~~~~~~~-~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 222 WRDGALHDRRHFA-SVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EETTEEEEEEEEE-CCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred ecCCCccCCeEEE-ECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence 8765421 1121 1234556789999999965554 44 4999997 677777776554 6899999999998888887
Q ss_pred CCeEEE
Q 047837 675 DGLQRV 680 (882)
Q Consensus 675 dg~i~v 680 (882)
++..++
T Consensus 297 ~~l~~~ 302 (305)
T 3dr2_A 297 PCLWML 302 (305)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 654443
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=2.9e-09 Score=111.80 Aligned_cols=278 Identities=9% Similarity=0.031 Sum_probs=168.4
Q ss_pred CcEEEeecCCCeEEEEeC---CceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEE
Q 047837 312 NAIACQFSTSEKLVVVYG---DHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFST 388 (882)
Q Consensus 312 ~~~~~~~s~~~~ll~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t 388 (882)
....++++++|+++++.. ++.++||.+.+++ ...+.... .....|-..+.+++++ ++++++++
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~----~~~~p~~~---------~~~~~~~~~p~gv~~d-~~g~L~v~ 83 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG----LIPFPPQS---------GNAIITFDTVLGIKSD-GNGIVWML 83 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE----EEESCCCC---------SSCCCCCSCEEEEEEC-SSSEEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCC----eecCCCcc---------cCcccceeEeeEEEEc-CCCcEEEE
Confidence 356799999999877743 3435666654221 11111100 0112456678899998 67776665
Q ss_pred eeC-----CCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeec
Q 047837 389 CSA-----DGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAH 463 (882)
Q Consensus 389 ~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 463 (882)
-.. ++.|.+||+.+++.+.....+... ..+
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---------------------------------------------~~~ 118 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---------------------------------------------TLS 118 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---------------------------------------------SCT
T ss_pred cCCCCcCCCCeEEEEECCCCeEEEEEECChhh---------------------------------------------ccc
Confidence 433 578999999887654332111000 011
Q ss_pred cceEEEEEEecCCCCCccceeccCCceEEEEEc---CCCcEEEEEcCCCceeEEEeecCCCCEE-EEEEccCCCEEEEEe
Q 047837 464 DAEILSLSFSLSSKKDDVLEEVTDSHYFLASGG---RDRTIHLYDVKRNFDLIESIDDHSAAVT-AVKFTCNGRKILSCS 539 (882)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~---~dg~v~iwd~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~ 539 (882)
...+..+++++++. ..+++.. .++.|.+||+.++ +..+.+.+|..... ...+.++|..+.+.+
T Consensus 119 ~~~~~~v~vd~~~g------------~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~ 185 (343)
T 2qe8_A 119 NSFVNDLAVDLIHN------------FVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDIDLVIDGVPVQIGQ 185 (343)
T ss_dssp TCCCCEEEEETTTT------------EEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSCCCEETTEECBEEC
T ss_pred ccccceEEEecCCC------------EEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccccccceeECCEEEEecc
Confidence 22334555554332 1445544 5788999999876 55555554432111 144555777777777
Q ss_pred CCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCC-cEEEEEccC---Cc-----eEEEEEecc
Q 047837 540 ADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK-KINSFSIAA---GK-----LIRSFKQAK 610 (882)
Q Consensus 540 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~iwd~~~---~~-----~~~~~~~~~ 610 (882)
.++.++.|. ..+..++|+|+++.|+.+..++ .+..++... +. ....+...+
T Consensus 186 ~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 186 PDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred CCCceecee--------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 787765543 1456799999999888887766 455554321 11 011111113
Q ss_pred CCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-CCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 611 DFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG-HGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 611 ~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
+...+..++++++|.++++...++.|.+||.++|+....... +...+.+++|.++++++++....+.+.+|
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 344677899999999999999999999999866765433332 24568999999999888887755444333
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=1.3e-08 Score=116.46 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=132.4
Q ss_pred EEEEccCCCEEEEEeCCC-------------------eEEEEeCccCccceeeecccee-c--ccCCceEEEEEecCC--
Q 047837 525 AVKFTCNGRKILSCSADR-------------------SLVVRDVVETNSAYKISRRHQQ-L--ASQGTVYDMDIDPTM-- 580 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~sp~~-- 580 (882)
.++++|++..++.++.++ .|..+|..+++........+.. . .......-+....+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 578889888988887664 5999999988877665432211 0 001122223344477
Q ss_pred -CEEEEEeCCCcEEEEEccCCceEEEEEeccCC--------CC-------------------------cEEEEECCCCCE
Q 047837 581 -EVVITVGQDKKINSFSIAAGKLIRSFKQAKDF--------GD-------------------------PMKVTVDPSGSY 626 (882)
Q Consensus 581 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--------~~-------------------------v~~~~~spdg~~ 626 (882)
..++.++.+|.++++|..+|+.+..+...... +. -..++|+|++.+
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred eeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 68899999999999999999998877521100 00 025789999888
Q ss_pred EEEEeC-------------------------------------------CCcEEEEEccCCeEEEEEccCCCCeEEEEEC
Q 047837 627 LVCSYS-------------------------------------------NKSICLYDFISGEMVAKAMGHGEVITGVTFL 663 (882)
Q Consensus 627 l~~~~~-------------------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 663 (882)
+++... .|.|..||+.+|+.+-++. +..++....+.
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~ 485 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLT 485 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceE
Confidence 877543 2789999999999888776 44455566677
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCc--ccEEEecCCCeEEEe
Q 047837 664 PDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAAL--SPIIFCEEEDQKCRM 713 (882)
Q Consensus 664 ~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~ 713 (882)
.++..++.++.||.+++||..+++.+..+..+..+ ..+.+..++...+.+
T Consensus 486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 78889999999999999999999988887655433 456666666655443
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=1.4e-08 Score=104.62 Aligned_cols=232 Identities=13% Similarity=0.053 Sum_probs=151.9
Q ss_pred CCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCE
Q 047837 455 GSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRK 534 (882)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 534 (882)
.+...+...........|+++++ .+++++..++.|..|+.. + . ...+..+...+..++++++|++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~------------~l~~~d~~~~~i~~~~~~-g-~-~~~~~~~~~~~~gl~~d~dG~l 99 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQR------------TLVWSDLVGRRVLGWRED-G-T-VDVLLDATAFTNGNAVDAQQRL 99 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGT------------EEEEEETTTTEEEEEETT-S-C-EEEEEESCSCEEEEEECTTSCE
T ss_pred CceEEEecCCcCccCCeEeCCCC------------EEEEEECCCCEEEEEeCC-C-C-EEEEeCCCCccceeeECCCCCE
Confidence 33344445555667788888775 267777888999999974 3 2 3445556678999999999997
Q ss_pred EEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEE----EeC-------------CCcEEEEEc
Q 047837 535 ILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVIT----VGQ-------------DKKINSFSI 597 (882)
Q Consensus 535 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~----~~~-------------d~~v~iwd~ 597 (882)
+++...++.|.+|+.. +. ...+... ........+.+++++|+|+++++ +.. .+.|..||.
T Consensus 100 ~v~~~~~~~v~~~~~~-g~-~~~~~~~-~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQ-AHLLVGR-YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEEETTTTEEEEECTT-SC-EEEEECE-ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEEECCCCEEEEECCC-CC-EEEEEec-cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 7776667889999975 32 2222111 11111235678999999998886 322 246788887
Q ss_pred cCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC------CcEEEEEccCCeEE--EEE-ccCCCCeEEEEECCCCCE
Q 047837 598 AAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN------KSICLYDFISGEMV--AKA-MGHGEVITGVTFLPDCKH 668 (882)
Q Consensus 598 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d------g~i~iwd~~~~~~~--~~~-~~h~~~v~~l~~s~d~~~ 668 (882)
.+++..... ....+..++|+||++.|+.+... +.|++|++..+... ..+ ....+....+++.++|++
T Consensus 177 ~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 177 DGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 777654332 22456789999999988777654 68999998765411 111 112345667999999995
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEE
Q 047837 669 IVSVGGDGLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKC 711 (882)
Q Consensus 669 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 711 (882)
.++. .+ .|.+|+.. +.....+..+.....++|++++..+.
T Consensus 253 wv~~-~~-gv~~~~~~-g~~~~~~~~~~~~~~~~f~~d~~~L~ 292 (305)
T 3dr2_A 253 WSSS-GT-GVCVFDSD-GQLLGHIPTPGTASNCTFDQAQQRLF 292 (305)
T ss_dssp EECC-SS-EEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEE
T ss_pred EEec-CC-cEEEECCC-CCEEEEEECCCceeEEEEeCCCCEEE
Confidence 5544 44 49999985 44444454444566778876554443
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=5.1e-08 Score=101.39 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=143.6
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLV 545 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 545 (882)
......|++++. .++++...++.|..||..++ .. ..+. ....+.+++++++|+++++. .++ |.
T Consensus 50 ~~egp~~~~~~~------------~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~ 112 (326)
T 2ghs_A 50 LGEGPTFDPASG------------TAWWFNILERELHELHLASG-RK-TVHA-LPFMGSALAKISDSKQLIAS-DDG-LF 112 (326)
T ss_dssp BEEEEEEETTTT------------EEEEEEGGGTEEEEEETTTT-EE-EEEE-CSSCEEEEEEEETTEEEEEE-TTE-EE
T ss_pred CCcCCeEeCCCC------------EEEEEECCCCEEEEEECCCC-cE-EEEE-CCCcceEEEEeCCCeEEEEE-CCC-EE
Confidence 345667777643 26777777889999998875 32 2222 34679999999999877754 444 99
Q ss_pred EEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC------CCcEEEEEccCCceEEEEEeccCCCCcEEEE
Q 047837 546 VRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ------DKKINSFSIAAGKLIRSFKQAKDFGDPMKVT 619 (882)
Q Consensus 546 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 619 (882)
+||..++... .+... ........+.+++++|+|+++++... .+.|..+| +++... +. .+......++
T Consensus 113 ~~d~~~g~~~-~~~~~-~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~--~~~~~~~~i~ 185 (326)
T 2ghs_A 113 LRDTATGVLT-LHAEL-ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF--ADISIPNSIC 185 (326)
T ss_dssp EEETTTCCEE-EEECS-STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE--EEESSEEEEE
T ss_pred EEECCCCcEE-EEeeC-CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee--CCCcccCCeE
Confidence 9998765432 22111 00011236889999999997765542 23555555 454433 32 2334567899
Q ss_pred ECCCCCEEEEE-eCCCcEEEEEcc--CC-e-----EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 620 VDPSGSYLVCS-YSNKSICLYDFI--SG-E-----MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 620 ~spdg~~l~~~-~~dg~i~iwd~~--~~-~-----~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
|+|||+.|+.+ ..++.|.+||+. +| + .+..+......+..+++.++|.+.++...++.|..||.. +....
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~ 264 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIA 264 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEE
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEE
Confidence 99999877554 457899999986 56 3 233343344567899999999988877777899999984 44444
Q ss_pred ccCCCC-CcccEEEe-cCCCeE
Q 047837 691 NFAQPA-ALSPIIFC-EEEDQK 710 (882)
Q Consensus 691 ~~~~~~-~~~~~~~s-~~~~~~ 710 (882)
.+..+. .+..+.|+ ++.+.+
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEE
T ss_pred EEECCCCCcEEEEEecCCCCEE
Confidence 444333 35677787 555544
No 234
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.08 E-value=5.6e-05 Score=85.11 Aligned_cols=150 Identities=7% Similarity=-0.086 Sum_probs=97.8
Q ss_pred CccccCCCCCeEEEe--eceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeE
Q 047837 5 HNIKKPDSSSKCAYV--AGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFIS 82 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~--~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~ 82 (882)
+++|++++. .+.+. .++.|..++++.......+.... .....+|+.+.++.|+.+.. ..+.|.+.++.......
T Consensus 41 ~l~~d~~~~-~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~GlAvD~~~~~LY~tD~-~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 41 ALDFDVTDN-RIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPEGMAVDWLGKNLYWADT-GTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp EEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEETTTTEEEEEET-TTTEEEEEETTSTTCEE
T ss_pred EEEEECCCC-EEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcceEEEEeCCCEEEEEEC-CCCEEEEEecCCCcEEE
Confidence 577888754 33332 24688888987655444432221 45788999988777777654 36789999987543322
Q ss_pred EeeccccceeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--CcEEEE
Q 047837 83 ELKGHLYGVECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--KHLKFW 156 (882)
Q Consensus 83 ~l~~h~~~V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~iw 156 (882)
.+...-.....|++.|...+|...+ +.|...++..... ..+-.. ......|+++++++.|..+.. +.|...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECS--CSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECC--CCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 2334445678999999666666665 5777777654433 222222 267899999998887777754 578888
Q ss_pred EcccC
Q 047837 157 TIGSS 161 (882)
Q Consensus 157 d~~~~ 161 (882)
+++..
T Consensus 194 d~dG~ 198 (628)
T 4a0p_A 194 NMLGL 198 (628)
T ss_dssp ETTSC
T ss_pred cCCCC
Confidence 87653
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.05 E-value=2e-07 Score=99.42 Aligned_cols=312 Identities=11% Similarity=0.023 Sum_probs=171.9
Q ss_pred CCEEEEeecCCCCeEEEEECCCceeeEEeecc---------ccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeee
Q 047837 56 GRYVAAGESGPQPAVLVWDCANLAFISELKGH---------LYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLK 125 (882)
Q Consensus 56 g~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h---------~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~ 125 (882)
+..|.+++. ++.|..+|.++|+.+...... ...+.+.....++..++... +.|..+|..+|+.+.+..
T Consensus 53 ~~~v~~~~~--~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADR--AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECT--TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcC--CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 456666643 779999999999998776542 12232222222444444444 999999999999998877
Q ss_pred cCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCc
Q 047837 126 ANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGV 205 (882)
Q Consensus 126 ~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 205 (882)
... ........ .++.+++...++.|..+|..+++..-....
T Consensus 131 ~~~--~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~------------------------------------ 171 (376)
T 3q7m_A 131 VAG--EALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNL------------------------------------ 171 (376)
T ss_dssp CSS--CCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC------------------------------------
T ss_pred CCC--ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeC------------------------------------
Confidence 653 11111111 245555545568899999988765111100
Q ss_pred ccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcc
Q 047837 206 VNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAK 285 (882)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~ 285 (882)
........ ........ +..++++..++.|..+|..+|+.+.......+.
T Consensus 172 -----------------~~~~~~~~------------~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~ 220 (376)
T 3q7m_A 172 -----------------DMPSLSLR------------GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT 220 (376)
T ss_dssp -----------------CC-----C------------CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred -----------------CCCceeec------------CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence 00000000 00111111 356778888999999999988876554321110
Q ss_pred cCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCC
Q 047837 286 KCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGC 365 (882)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 365 (882)
... .+. .+. .+.......++.+++++.++.+..+|..+++...... .
T Consensus 221 ~~~----~~~---------~~~----~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-----~----------- 267 (376)
T 3q7m_A 221 GST----EID---------RLS----DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE-----L----------- 267 (376)
T ss_dssp --------------------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC-----C-----------
T ss_pred CCc----ccc---------ccc----ccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc-----C-----------
Confidence 000 000 000 0000001125778888889999999998765432110 0
Q ss_pred CCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccC
Q 047837 366 ENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQG 445 (882)
Q Consensus 366 ~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (882)
.....+.. ++..++.++.++.+..+|..+++.+.+......
T Consensus 268 -----~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~------------------------------- 308 (376)
T 3q7m_A 268 -----GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH------------------------------- 308 (376)
T ss_dssp -----CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-------------------------------
T ss_pred -----CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-------------------------------
Confidence 01112222 355677778899999999998876543220000
Q ss_pred eEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEE
Q 047837 446 YRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTA 525 (882)
Q Consensus 446 ~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~ 525 (882)
..+...... + ..++.++.+|.+.++|..++ +.+.........+..
T Consensus 309 -------------------~~~~~~~~~--~-------------~~l~v~~~~g~l~~~d~~tG-~~~~~~~~~~~~~~~ 353 (376)
T 3q7m_A 309 -------------------RLLTSPVLY--N-------------GNLVVGDSEGYLHWINVEDG-RFVAQQKVDSSGFQT 353 (376)
T ss_dssp -------------------SCCCCCEEE--T-------------TEEEEECTTSEEEEEETTTC-CEEEEEECCTTCBCS
T ss_pred -------------------CcccCCEEE--C-------------CEEEEEeCCCeEEEEECCCC-cEEEEEecCCCccee
Confidence 000000000 1 16888888999999999887 454444432233322
Q ss_pred -EEEccCCCEEEEEeCCCeEEEEe
Q 047837 526 -VKFTCNGRKILSCSADRSLVVRD 548 (882)
Q Consensus 526 -~~~s~~~~~l~s~~~dg~i~vwd 548 (882)
... .+..|+.++.+|.|..|+
T Consensus 354 ~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 354 EPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCEE--ECCEEEEEeCCCEEEEEe
Confidence 222 355788889999999886
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=9.6e-09 Score=106.94 Aligned_cols=202 Identities=7% Similarity=-0.051 Sum_probs=123.4
Q ss_pred CCCcEEEEEcCCCceeEEEeecC-------CCCEEEEEEccCCCEEEEEeC--CCeEEE--EeCccCccceeeeccc---
Q 047837 497 RDRTIHLYDVKRNFDLIESIDDH-------SAAVTAVKFTCNGRKILSCSA--DRSLVV--RDVVETNSAYKISRRH--- 562 (882)
Q Consensus 497 ~dg~v~iwd~~~~~~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~--- 562 (882)
.++.|.+||+.+. +.+..+.-+ ......++|+|||++++++.. +..+.+ +|..+ ...+....
T Consensus 94 ~~~~VsviD~~T~-~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~ 169 (368)
T 1mda_H 94 RTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFH 169 (368)
T ss_dssp EEEEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCC
T ss_pred CCCEEEEEECCCC-CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceE
Confidence 3678999999987 666666532 123567999999999998864 467888 88865 11111000
Q ss_pred ee---------cccCCceEEEE--------------------------EecCCCEEEEEeCCCcEEEEEccCCc--eEEE
Q 047837 563 QQ---------LASQGTVYDMD--------------------------IDPTMEVVITVGQDKKINSFSIAAGK--LIRS 605 (882)
Q Consensus 563 ~~---------~~~~~~v~~~~--------------------------~sp~~~~l~~~~~d~~v~iwd~~~~~--~~~~ 605 (882)
.. ....+.+..+. ..+++..++..+. +.|.+.|+.++. .+..
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 00 00000000000 1333444444444 667777775432 2222
Q ss_pred EEecc--------CCCCcEEEEECCCCCEEEEEeC---------CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCC-
Q 047837 606 FKQAK--------DFGDPMKVTVDPSGSYLVCSYS---------NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCK- 667 (882)
Q Consensus 606 ~~~~~--------~~~~v~~~~~spdg~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~- 667 (882)
+.... .......++++||++.+.++.. ++.+.++|+.+++.+..+.... ....|+|+|||+
T Consensus 249 ~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~ 327 (368)
T 1mda_H 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGAS 327 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSC
T ss_pred EEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCE
Confidence 21000 0111222789999998876533 2356699999999988876433 688999999998
Q ss_pred EEEEEe-CCCeEEEEeCCCCCCCcccCCCCCcccEEEe
Q 047837 668 HIVSVG-GDGLQRVKEKYGILPPRNFAQPAALSPIIFC 704 (882)
Q Consensus 668 ~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~s 704 (882)
.+++.. .++.|.++|+.+.+....+........+.+.
T Consensus 328 l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 328 DNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred EEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEee
Confidence 566666 5999999999998888777655544444443
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1.5e-08 Score=106.08 Aligned_cols=176 Identities=9% Similarity=-0.006 Sum_probs=119.4
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCce
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTV 571 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 571 (882)
+..++.++.|..+|.. + .....+......+.++.+.+++..++.. +.|..+| .++......... ...+
T Consensus 150 l~vgt~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~------~~~~ 217 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-G-TEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG------YWTV 217 (330)
T ss_dssp EEEECTTSEEEEECTT-S-CEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS------SCCC
T ss_pred EEEEcCCCEEEEECCC-C-CEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC------Ccce
Confidence 6667788899999987 4 4444444455567777887788765544 6699999 544444333211 2457
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc
Q 047837 572 YDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAM 651 (882)
Q Consensus 572 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 651 (882)
.++...++|.+. .++.++.|..+|. +++.+..+. .....+..+.+.+++. |..++.+|.|..+|. +++.+..+.
T Consensus 218 ~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~--~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 218 TRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFK--TGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp SCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEE--CSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEE
T ss_pred eceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEee--CCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEE
Confidence 788888887644 4567788888884 577766665 3334445566766665 555667888999995 788777776
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 652 GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 652 ~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
.....+.++...++|++ ..++.+|.+++......
T Consensus 292 ~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 292 TGSWIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CSSCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred cCCccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 55667788888888865 45888999998876543
No 238
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.03 E-value=1.5e-08 Score=106.24 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=141.7
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEc--CCCcEEEEEcCCCceeEEEe-------ecCCCCEEEEEEccCCCEE
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGG--RDRTIHLYDVKRNFDLIESI-------DDHSAAVTAVKFTCNGRKI 535 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~v~iwd~~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l 535 (882)
.....++++++++ ++++.. .++.++||.+.++ .. ..+ ..|...+..++++++++++
T Consensus 17 ~~p~~va~~~~g~-------------~~v~~~~~~~~~~~l~~~~~g-~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~ 81 (343)
T 2qe8_A 17 LAPGNITLTPDGR-------------LFLSLHQFYQPEMQVAELTQD-GL-IPFPPQSGNAIITFDTVLGIKSDGNGIVW 81 (343)
T ss_dssp SCEEEEEECTTSC-------------EEEEECGGGCCSCSEEEEETT-EE-EESCCCCSSCCCCCSCEEEEEECSSSEEE
T ss_pred CCcceEEECCCCC-------------EEEEeCCCCCCceEEEEECCC-Ce-ecCCCcccCcccceeEeeEEEEcCCCcEE
Confidence 5566777777766 666643 2332455554433 22 222 1345679999999998876
Q ss_pred EEEeC-----CCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEE-EEEe---CCCcEEEEEccCCceEEEE
Q 047837 536 LSCSA-----DRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVV-ITVG---QDKKINSFSIAAGKLIRSF 606 (882)
Q Consensus 536 ~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~---~d~~v~iwd~~~~~~~~~~ 606 (882)
++-.. +..|.+||+.+++....+........+......+++++++..+ ++.. .++.|.+||+.+++..+.+
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 66544 5789999998765443332211111223456899999865554 4444 5789999999988876655
Q ss_pred Eec-------------c--------------CCCCcEEEEECCCCCEEEEEeCCC-cEEEEEcc---CCe-----EEE--
Q 047837 607 KQA-------------K--------------DFGDPMKVTVDPSGSYLVCSYSNK-SICLYDFI---SGE-----MVA-- 648 (882)
Q Consensus 607 ~~~-------------~--------------~~~~v~~~~~spdg~~l~~~~~dg-~i~iwd~~---~~~-----~~~-- 648 (882)
..+ + -...+..|+|+|||++|+.+..++ .++.++.. .+. ...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 310 0 012357899999999888877665 45444432 110 000
Q ss_pred EEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCC--CCCcccEEEecCCCeEEE
Q 047837 649 KAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQ--PAALSPIIFCEEEDQKCR 712 (882)
Q Consensus 649 ~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~ 712 (882)
...++.+....++++++|.++++...++.|.+||..++........ ......++|.+++...+.
T Consensus 242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence 1123445667899999999999998999999999843332111111 122346777776543333
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.01 E-value=2.4e-08 Score=107.77 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=66.4
Q ss_pred EEEEeecCCCCeEEEEECCCceeeEEeecc---------------------------------------ccceeEEEECC
Q 047837 58 YVAAGESGPQPAVLVWDCANLAFISELKGH---------------------------------------LYGVECIAFSP 98 (882)
Q Consensus 58 ~la~g~~~~d~~I~vwd~~t~~~~~~l~~h---------------------------------------~~~V~~lafsp 98 (882)
|.+..+.|..|.|+|+-+.+++.+.++.-. .+.....++|.
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~ 94 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSF 94 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEE
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCC
Confidence 444444467899999999999887665410 01122355555
Q ss_pred -----CCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEE-c-cCCCEEEEECCC
Q 047837 99 -----DGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACF-S-SDAKFIVTAGKK 151 (882)
Q Consensus 99 -----dg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~f-s-~d~~~l~~~~~~ 151 (882)
||++|...+ +.|.+.|+.+.++...+..+.. ..+..++| + |+++++.+++..
T Consensus 95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 95 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGED 156 (595)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECS
T ss_pred CCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEeccc
Confidence 899998887 7899999999998886654321 56889998 5 899998877543
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=8.6e-07 Score=92.30 Aligned_cols=139 Identities=13% Similarity=0.178 Sum_probs=98.5
Q ss_pred EEEEEECCC-----CceEEEEEecCCCCCeEEEEE-----------c--CCCCEEEEeecCCCCeEEEEECCCc----ee
Q 047837 23 VLVVYDVDS-----STQSHLMVSHRMPKPLCCVAM-----------S--RDGRYVAAGESGPQPAVLVWDCANL----AF 80 (882)
Q Consensus 23 ~v~vwd~~~-----~~~~~~l~~h~~~~~I~~va~-----------s--pdg~~la~g~~~~d~~I~vwd~~t~----~~ 80 (882)
.|.+.|++. ++.++.+.--....+...+.| + +++++|.+... .++.|.|+|+.+. +.
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l-~s~~I~viD~~t~p~~p~~ 122 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL-RSSRIYIIDTKPNPREPKI 122 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT-TTCCEEEEECCSCTTSCEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC-CCCeEEEEECCCCCCCcee
Confidence 688999987 777776542211123444555 7 89999888764 4789999999866 67
Q ss_pred eEEeec-------cccceeEEEECCCCCEEEEEc--------CEEEEEEcCcceeeeeeecCCcc-cceeEEEEccCCCE
Q 047837 81 ISELKG-------HLYGVECIAFSPDGEHLVTVG--------GYIYLWNWRSAMLVMKLKANSSC-SAITSACFSSDAKF 144 (882)
Q Consensus 81 ~~~l~~-------h~~~V~~lafspdg~~Las~~--------~~i~iWd~~~g~~~~~~~~~~~~-~~v~~l~fs~d~~~ 144 (882)
++++.. -...-..+..+||| .++++. +.|.+.|.++++.+.++...... .--..+.|+|+++.
T Consensus 123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE
Confidence 777731 11245678899999 555544 47999999999999998754321 22345888999999
Q ss_pred EEEEC--------------------CCcEEEEEcccCcc
Q 047837 145 IVTAG--------------------KKHLKFWTIGSSAT 163 (882)
Q Consensus 145 l~~~~--------------------~~~i~iwd~~~~~~ 163 (882)
+++.. .++|.+||+.+++.
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 99884 46899999986543
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=3.1e-08 Score=106.89 Aligned_cols=146 Identities=11% Similarity=0.092 Sum_probs=99.2
Q ss_pred ccCCCEEEEEeCCCeEEEEeCcc--Ccc-ceeeeccceecccCCceEEEEEecCCCEEEEEe-CCCcEEEEEccCCc---
Q 047837 529 TCNGRKILSCSADRSLVVRDVVE--TNS-AYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QDKKINSFSIAAGK--- 601 (882)
Q Consensus 529 s~~~~~l~s~~~dg~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~--- 601 (882)
.++|++... +.|.+.|..+ +.. ...+.. . ....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 245 v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~ 313 (595)
T 1fwx_A 245 IAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-A------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF 313 (595)
T ss_dssp HHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-E------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred ccCCCeeEE----CcEEEEeCcccCCceeEEEEec-C------CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc
Confidence 344554433 4499999986 322 112211 1 2567899999999887766 56799999999653
Q ss_pred ---------eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC----------CeEEEEEccCCCCe-----
Q 047837 602 ---------LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS----------GEMVAKAMGHGEVI----- 657 (882)
Q Consensus 602 ---------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v----- 657 (882)
.+..+ .-...+..++|+|+|...++..-|++|.+||+.+ .+.+..+..|..+-
T Consensus 314 ~~~l~~~~~v~~~v---~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 314 YENADPRSAVVAEP---ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp HSCCCGGGGEEECC---BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred ccccCcccceEEEc---CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 23333 2345789999999994445667799999999987 56777877665432
Q ss_pred EEEEECCCCCEEEEEeC---CCe----------EEEEeCCCCCC
Q 047837 658 TGVTFLPDCKHIVSVGG---DGL----------QRVKEKYGILP 688 (882)
Q Consensus 658 ~~l~~s~d~~~l~s~~~---dg~----------i~vwd~~~~~~ 688 (882)
.++.++|||++|+++.. |+. -.++|+.+.+.
T Consensus 391 ~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 22346899999998853 442 27888866553
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.95 E-value=1.5e-07 Score=97.83 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=148.4
Q ss_pred eEEEEEcCCCcEEEEEcCCC---ceeEEEee------c-CCCCEEEEEEccCCCEEEEEeCC------CeEEEEeCccCc
Q 047837 490 YFLASGGRDRTIHLYDVKRN---FDLIESID------D-HSAAVTAVKFTCNGRKILSCSAD------RSLVVRDVVETN 553 (882)
Q Consensus 490 ~~l~~g~~dg~v~iwd~~~~---~~~~~~~~------~-h~~~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~ 553 (882)
.+++.+..+++|.++|+.+. .+..+++. . ....-..+..+|+| .++++..+ +.|.++|..+.+
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 36777888899999998643 23444442 1 11245678889999 77766555 789999999777
Q ss_pred cceeeeccceecccCCceEEEEEecCCCEEEEEe-------------------CCCcEEEEEccCCceEEEEEeccCCCC
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-------------------QDKKINSFSIAAGKLIRSFKQAKDFGD 614 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~ 614 (882)
...+..... .....-+.+.|+|+++.+++.. .+.+|.+||+.+++.+.++........
T Consensus 176 v~~~~~~~~---~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 176 PLGKWEIDR---GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp EEEECCSBC---TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred EEEEEccCC---CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 655553221 1112355788999999888874 367999999999988888873212234
Q ss_pred cEEEEE--CCCCCEEEEEeC------CCcEEEEEccCCeE--EEE--EccC----------------CCCeEEEEECCCC
Q 047837 615 PMKVTV--DPSGSYLVCSYS------NKSICLYDFISGEM--VAK--AMGH----------------GEVITGVTFLPDC 666 (882)
Q Consensus 615 v~~~~~--spdg~~l~~~~~------dg~i~iwd~~~~~~--~~~--~~~h----------------~~~v~~l~~s~d~ 666 (882)
...+.| +|+++++.+++. +++|.+|....|+. ... +... ......+.+|+||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 556666 999999887774 56888877766532 111 1110 2457889999999
Q ss_pred CEEEEEe-CCCeEEEEeCCCCCCC---cccCCCC---------------CcccEEEecCCCeEEEec
Q 047837 667 KHIVSVG-GDGLQRVKEKYGILPP---RNFAQPA---------------ALSPIIFCEEEDQKCRMD 714 (882)
Q Consensus 667 ~~l~s~~-~dg~i~vwd~~~~~~~---~~~~~~~---------------~~~~~~~s~~~~~~~~~~ 714 (882)
++|..+. ..+.|.++|+.+...+ ....... .-..+.+++++.++...+
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998776 5789999999744222 2221111 235688888888776665
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=3.6e-10 Score=119.68 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=108.4
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
.+++++.|+.|+.||..++ +.+-.+.. ..+.+..+..++..+++++.|+.|+.||..+++...+............+
T Consensus 11 ~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred EEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 7889999999999999887 55544544 44555555567878888889999999999877665444221110000011
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEE
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKA 650 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~ 650 (882)
.+. ++..+++++.|+.|+.||.++|+.+..+. .+. ...++|++..+++++.|+.|+.||.++|+.+..+
T Consensus 88 ----~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~--~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 88 ----CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS--SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp ----CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ----eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec--CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 111 34567788889999999999999988876 222 2456778889999999999999999999876555
Q ss_pred ccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCCCCCcccCCCCCc
Q 047837 651 MGHGEVITGVTFLPDC---KHIVSVGGDGLQRVKEKYGILPPRNFAQPAAL 698 (882)
Q Consensus 651 ~~h~~~v~~l~~s~d~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 698 (882)
..+. ....++..+. ..++.++.||.|+.||..++.....+....++
T Consensus 157 ~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv 205 (369)
T 2hz6_A 157 TYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV 205 (369)
T ss_dssp EEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE
T ss_pred eccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCce
Confidence 4221 1223344432 46777889999999999988877665544443
No 244
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.89 E-value=4.4e-08 Score=113.41 Aligned_cols=201 Identities=13% Similarity=0.146 Sum_probs=130.9
Q ss_pred ccceEEEEEEecCCCCCccceeccCCceEEEE-----EcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEE
Q 047837 463 HDAEILSLSFSLSSKKDDVLEEVTDSHYFLAS-----GGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILS 537 (882)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 537 (882)
|...+..++|+|+++ +||. |+....|++||+.++......+... ....++|+ |++.|+.
T Consensus 127 ~~~~l~~~~~SpDg~-------------~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-------------ILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFY 190 (693)
T ss_dssp SCCEEEEEEECTTSS-------------EEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEE
T ss_pred CcEEEEEEEECCCCC-------------EEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEE
Confidence 344566677777776 5553 3334679999999874332222221 12467899 9999998
Q ss_pred EeCCCe-------------EEEEeCccCccceeeeccceecc-cCCceEEEEEecCCCEEEEEeC----CCcEEEEEccC
Q 047837 538 CSADRS-------------LVVRDVVETNSAYKISRRHQQLA-SQGTVYDMDIDPTMEVVITVGQ----DKKINSFSIAA 599 (882)
Q Consensus 538 ~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~ 599 (882)
++.+.. |++|++.+........... .. +......+.|+|||++|+.... +..|+++|+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA--IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESC--SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEec--CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 887743 9999988654332222111 11 2235678999999998865443 24899999987
Q ss_pred Cc-eEEEEEeccCCCCcEEEEECCCCCEEEE-EeCC---CcEEEEEccCCeE--EEEEccCCCCeEEEEECCCCCEEEEE
Q 047837 600 GK-LIRSFKQAKDFGDPMKVTVDPSGSYLVC-SYSN---KSICLYDFISGEM--VAKAMGHGEVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 600 ~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~d~~~l~s~ 672 (882)
+. ....+. .+....... ++++|..|+. ...+ +.|..+|+.+++. ...+..|...+. .|++++++|+..
T Consensus 269 ~~~~~~~l~--~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 269 ENAPLLTVQ--GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp TTCCCEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCceEEEe--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 64 344554 445555554 6676666554 4333 5799999988754 345556766665 899999988877
Q ss_pred eCCC---eEEEEeCCCC
Q 047837 673 GGDG---LQRVKEKYGI 686 (882)
Q Consensus 673 ~~dg---~i~vwd~~~~ 686 (882)
..++ .|++||+.+.
T Consensus 344 ~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 344 YMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEETTEEEEEEECTTSC
T ss_pred EEECCeeEEEEEECCCC
Confidence 6544 6889998754
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=3.7e-08 Score=102.92 Aligned_cols=128 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCCC
Q 047837 21 GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPDG 100 (882)
Q Consensus 21 ~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspdg 100 (882)
++.|..|| .+++.+..+..+. ..+.++++.++|.+ .+++. + |..+|. +++.+..+..+.......++. ++
T Consensus 39 ~~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l-~v~t~--~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~ 108 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWFFKSGE--IIECRPSIGKDGTI-YFGSD--K--VYAINP-DGTEKWRFDTKKAIVSDFTIF-ED 108 (330)
T ss_dssp TTTTEEEC-TTSCEEESSCGGG--EEEECCEETTTTEE-CCSSC--E--EEEECC-CGGGGGGSCC-----CCEEEE-TT
T ss_pred CCEEEEEC-CCCcEEEEEecCC--CcccceEEecCCcE-EEecC--c--EEEECC-CCcEEEEEECCCCcccCceEE-CC
Confidence 56799999 8888765543333 45678888888864 44432 3 888886 777665554433333334444 55
Q ss_pred CEEEEEc-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCc
Q 047837 101 EHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSA 162 (882)
Q Consensus 101 ~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~ 162 (882)
.+.+... +.|..+|.. |+.+.....+. ..+.++...+++.+++...++.|..+|.. +.
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKK--AIYATPIVSEDGTIYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTSCEEEECTTSEEEEECTT-SC
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCC--ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC
Confidence 4444433 899999988 88777766554 55677778888887776556889999877 44
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=8.8e-10 Score=116.69 Aligned_cols=160 Identities=9% Similarity=0.025 Sum_probs=87.2
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCC-CEE-EEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSA-AVT-AVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~-~v~-~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
++++++.|+.|+.||..++ +.+..+..+.. .+. ...+. ++..+++++.|+.++.||..+++...+.....
T Consensus 51 ~~v~~s~dg~l~a~d~~tG-~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------ 122 (369)
T 2hz6_A 51 AFLPDPNDGSLYTLGSKNN-EGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ 122 (369)
T ss_dssp CEEECTTTCCEEEC------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------
T ss_pred EEEEeCCCCEEEEEECCCC-ceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------
Confidence 5777789999999999776 33333332211 010 00111 34567788889999999999887665543211
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCC---CEEEEEeCCCcEEEEEccCCe
Q 047837 569 GTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSG---SYLVCSYSNKSICLYDFISGE 645 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~dg~i~iwd~~~~~ 645 (882)
...++|++..+++++.|+.|+.||.++|+.+..+..... ...+++++. ..+++++.||.|+.||..+|+
T Consensus 123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp --------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 134567888999999999999999999998877652221 223344432 456778889999999999999
Q ss_pred EEEEEccCCCCeEE-EEECCCCC
Q 047837 646 MVAKAMGHGEVITG-VTFLPDCK 667 (882)
Q Consensus 646 ~~~~~~~h~~~v~~-l~~s~d~~ 667 (882)
.+..+. ...++.. ..++++|.
T Consensus 195 ~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 195 VLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSC
T ss_pred EEEEec-CCCceEEEEEecCCce
Confidence 887776 3445443 34455554
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.83 E-value=4.7e-07 Score=88.60 Aligned_cols=152 Identities=6% Similarity=-0.009 Sum_probs=109.2
Q ss_pred CCCccccCCCCCeEEEee----ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc
Q 047837 3 PNHNIKKPDSSSKCAYVA----GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL 78 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~----~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~ 78 (882)
|.++.|+||+ .+...+ ++.|.++|+++++.+..+.-... .-...+++ +++.|+++.. .++.+.++|.+++
T Consensus 23 ~~Gl~~~~dg--~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~--~g~~lyv~t~-~~~~v~viD~~t~ 96 (266)
T 2iwa_A 23 TQGLVYAEND--TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTL--LNEKLYQVVW-LKNIGFIYDRRTL 96 (266)
T ss_dssp EEEEEECSTT--EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEE--ETTEEEEEET-TCSEEEEEETTTT
T ss_pred cccEEEeCCC--eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEE--eCCEEEEEEe-cCCEEEEEECCCC
Confidence 4689999984 344443 36999999999999888653221 12234555 4566776664 4789999999999
Q ss_pred eeeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcc---cceeEEEEccCCCEEEEECC-Cc
Q 047837 79 AFISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSC---SAITSACFSSDAKFIVTAGK-KH 152 (882)
Q Consensus 79 ~~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~---~~v~~l~fs~d~~~l~~~~~-~~ 152 (882)
+.+.++... .+ ....+++||++|+.+. +.|.++|..+.+.+.++...... ..++.+.|. ++...+.... +.
T Consensus 97 ~v~~~i~~g-~~-~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 97 SNIKNFTHQ-MK-DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEEEECC-SS-SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred cEEEEEECC-CC-CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 999998643 11 2345777888887776 99999999999999888754321 246788888 7766665543 78
Q ss_pred EEEEEcccCcc
Q 047837 153 LKFWTIGSSAT 163 (882)
Q Consensus 153 i~iwd~~~~~~ 163 (882)
|.+-|..+++.
T Consensus 174 V~vID~~tg~V 184 (266)
T 2iwa_A 174 IARISAKDGTL 184 (266)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcE
Confidence 99999988876
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.83 E-value=1.3e-06 Score=99.88 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=123.6
Q ss_pred EEEEccCCCEEEEEeCCCe-------------------EEEEeCccCccceeeecccee-cc--cCCceEEEEEecCCC-
Q 047837 525 AVKFTCNGRKILSCSADRS-------------------LVVRDVVETNSAYKISRRHQQ-LA--SQGTVYDMDIDPTME- 581 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~-~~--~~~~v~~~~~sp~~~- 581 (882)
.++++|+...++.++.++. |..+|..+++...+....+.. .. ...+.....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 4688888888888887763 999999988877666433211 00 112222233334665
Q ss_pred --EEEEEeCCCcEEEEEccCCceEEEEEecc---------CCC-------------------------CcEEEEECCCCC
Q 047837 582 --VVITVGQDKKINSFSIAAGKLIRSFKQAK---------DFG-------------------------DPMKVTVDPSGS 625 (882)
Q Consensus 582 --~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------~~~-------------------------~v~~~~~spdg~ 625 (882)
.++.++.+|.++++|..+|+.+....... ... .-..++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 68889999999999999999885543111 000 011267888777
Q ss_pred EEEEEe------------------------------------CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEE
Q 047837 626 YLVCSY------------------------------------SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHI 669 (882)
Q Consensus 626 ~l~~~~------------------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 669 (882)
++.... .+|.|..||+.+|+.+-+...+ .++....+...+.+|
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLV 472 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEE
Confidence 665421 2378999999999988776533 333434455577889
Q ss_pred EEEeCCCeEEEEeCCCCCCCcccCCCCCc--ccEEEecCCCeEEE
Q 047837 670 VSVGGDGLQRVKEKYGILPPRNFAQPAAL--SPIIFCEEEDQKCR 712 (882)
Q Consensus 670 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~ 712 (882)
+.++.|+.++.||..+++.+..+..+..+ ..+.+..++...|.
T Consensus 473 f~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva 517 (668)
T 1kv9_A 473 FQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA 517 (668)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEE
Confidence 99999999999999999888777665443 34555455554433
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.81 E-value=2.5e-06 Score=97.60 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=105.6
Q ss_pred cEEEEEcCCCceeEEEeec--CC-------CCEEEEEEccCCC---EEEEEeCCCeEEEEeCccCccceeeecccee---
Q 047837 500 TIHLYDVKRNFDLIESIDD--HS-------AAVTAVKFTCNGR---KILSCSADRSLVVRDVVETNSAYKISRRHQQ--- 564 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~~--h~-------~~v~~~~~s~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--- 564 (882)
.|..+|..++ +.+-.++. |. .+.....+..+|+ .++.++.+|.++++|..+++...........
T Consensus 271 ~v~AlD~~tG-~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 271 SILAIRPDTG-KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (668)
T ss_dssp EEEEECTTTC-CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eEEEEcCCCC-ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence 4888888877 34333332 22 2233233334665 6889999999999999988765332211100
Q ss_pred -c--ccC------------------------CceEEEEEecCCCEEEEEe------------------------------
Q 047837 565 -L--ASQ------------------------GTVYDMDIDPTMEVVITVG------------------------------ 587 (882)
Q Consensus 565 -~--~~~------------------------~~v~~~~~sp~~~~l~~~~------------------------------ 587 (882)
. ... ..-..++++|+..+++...
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 0 000 0011367888777665421
Q ss_pred ------CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCe-EEE
Q 047837 588 ------QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVI-TGV 660 (882)
Q Consensus 588 ------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l 660 (882)
.++.|..||+.+|+.+.+... ........+...+.++++++.|+.++.||.++|+.+..+....+.. .-+
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~ 506 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPM 506 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCce
Confidence 237899999999999888762 2233334455568899999999999999999999998886543211 234
Q ss_pred EECCCCC-EEEEEe
Q 047837 661 TFLPDCK-HIVSVG 673 (882)
Q Consensus 661 ~~s~d~~-~l~s~~ 673 (882)
.+..+|+ +++.++
T Consensus 507 ~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 507 TFELAGRQYVAIMA 520 (668)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 4455776 555544
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=2e-05 Score=78.95 Aligned_cols=218 Identities=14% Similarity=0.057 Sum_probs=135.8
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEE-EEeCCCeE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKIL-SCSADRSL 544 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i 544 (882)
....+++++++. .++++-..++.|..++.... ...............+++++++..|+ +-...+.|
T Consensus 37 ~~~gi~~d~~~~------------~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 37 VIIGLAFDCVDK------------VVYWTDISEPSIGRASLHGG-EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEEEEETTTT------------EEEEEETTTTEEEEEESSSC-CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEEecCCC------------EEEEEECCCCEEEEEecCCC-CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEE
Confidence 456677777544 15555566789999998754 33333333335788999999765555 44557789
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC---CCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ---DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
.++++.... ...+... .......++++|++..|..+.. .+.|..+++. ++....+. ......+..++++
T Consensus 104 ~~~~~~g~~-~~~~~~~-----~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~-~~~~~~P~gia~d 175 (267)
T 1npe_A 104 EVAKMDGTQ-RRVLFDT-----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILA-QDNLGLPNGLTFD 175 (267)
T ss_dssp EEEETTSCS-CEEEECS-----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEE-CTTCSCEEEEEEE
T ss_pred EEEEcCCCC-EEEEEEC-----CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEE-ECCCCCCcEEEEc
Confidence 999987432 2222111 1135689999997666655554 3688888876 43333332 1234568899999
Q ss_pred CCCCEEE-EEeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCCCCcccCCCC--C
Q 047837 622 PSGSYLV-CSYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVG-GDGLQRVKEKYGILPPRNFAQPA--A 697 (882)
Q Consensus 622 pdg~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~--~ 697 (882)
+++.+|. +-...+.|.++|.........+.+ ......|+.. +..|+.+. ..+.|..+|..+++....+.... .
T Consensus 176 ~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~ 252 (267)
T 1npe_A 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR 252 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCC
T ss_pred CCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccc
Confidence 9877665 444567999999876544433332 2344677764 44555454 66899999998777666554332 2
Q ss_pred cccEEEecCC
Q 047837 698 LSPIIFCEEE 707 (882)
Q Consensus 698 ~~~~~~s~~~ 707 (882)
...+.+.++.
T Consensus 253 p~gi~~~~~~ 262 (267)
T 1npe_A 253 LYGITIALSQ 262 (267)
T ss_dssp CCCEEEECSC
T ss_pred cceeeecCcc
Confidence 3456666554
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=3e-06 Score=82.92 Aligned_cols=184 Identities=8% Similarity=0.007 Sum_probs=126.1
Q ss_pred EEEEEc--CCCcEEEEEcCCCceeEEEeec-CCCCEEEEEEccCCCEEE-EEeCCCeEEEEeCccCccceeeeccceecc
Q 047837 491 FLASGG--RDRTIHLYDVKRNFDLIESIDD-HSAAVTAVKFTCNGRKIL-SCSADRSLVVRDVVETNSAYKISRRHQQLA 566 (882)
Q Consensus 491 ~l~~g~--~dg~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 566 (882)
+.++.+ .++.|.++|+.++ +.+..+.- .......+++. +..|. +.-.++.+.++|..+.+...++... .
T Consensus 34 Lyvstg~~~~s~v~~iD~~tg-~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~--- 106 (266)
T 2iwa_A 34 LFESTGLYGRSSVRQVALQTG-KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M--- 106 (266)
T ss_dssp EEEEECSTTTCEEEEEETTTC-CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S---
T ss_pred EEEECCCCCCCEEEEEECCCC-CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C---
Confidence 444443 3689999999987 55555442 22223345554 44554 4556889999999877665554322 0
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCC---CCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 567 SQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDF---GDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 567 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
. . ...+++||+.++++..+++|.++|..+.+.+..+...... ..+..+.|. +|+..+....++.|.+-|..+
T Consensus 107 ~--~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 107 K--D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp S--S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred C--C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence 1 1 2346678887777777889999999999998888743221 246788888 776666666688999999999
Q ss_pred CeEEEEEccC-------------CCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCC
Q 047837 644 GEMVAKAMGH-------------GEVITGVTFLPDCKHIV-SVGGDGLQRVKEKYGI 686 (882)
Q Consensus 644 ~~~~~~~~~h-------------~~~v~~l~~s~d~~~l~-s~~~dg~i~vwd~~~~ 686 (882)
++.+..+.-. ......|+|+|+++.|+ ++...+.+.+-++...
T Consensus 182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999888531 13568999999987555 4557788888877553
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.70 E-value=6.5e-05 Score=75.19 Aligned_cols=166 Identities=10% Similarity=0.057 Sum_probs=105.3
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC---CCeEEEEeCccCccceeeeccceeccc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA---DRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
+.++-...+.|.++++... ...............++++|++..|..+.. .+.|..+++.... ...+... .
T Consensus 93 lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~-----~ 165 (267)
T 1npe_A 93 IFWTDSQLDRIEVAKMDGT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQD-----N 165 (267)
T ss_dssp EEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECT-----T
T ss_pred EEEEECCCCEEEEEEcCCC-CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEEC-----C
Confidence 4555556778999988653 222222222356789999997666655543 3678888876322 2222111 1
Q ss_pred CCceEEEEEecCCCEEEEEe-CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 568 QGTVYDMDIDPTMEVVITVG-QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
......+++++++..|..+. ..+.|.++|.........+. ....+..+++. ++.++++....+.|.++|..+++.
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc
Confidence 23678999999877665554 55789999998544333332 23445677764 344444555668999999999999
Q ss_pred EEEEccCC-CCeEEEEECCCCC
Q 047837 647 VAKAMGHG-EVITGVTFLPDCK 667 (882)
Q Consensus 647 ~~~~~~h~-~~v~~l~~s~d~~ 667 (882)
+..+.... .....+++.|++.
T Consensus 242 ~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 242 MDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEECCSSCCCCCCEEEECSCC
T ss_pred eEEEccccccccceeeecCccC
Confidence 88886432 2467888888864
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.68 E-value=1.5e-05 Score=89.18 Aligned_cols=187 Identities=13% Similarity=0.137 Sum_probs=119.0
Q ss_pred EEEEccCCCEEEEEeC--------------------C----CeEEEEeCccCccceeeeccce-ecc---cCCceEEEEE
Q 047837 525 AVKFTCNGRKILSCSA--------------------D----RSLVVRDVVETNSAYKISRRHQ-QLA---SQGTVYDMDI 576 (882)
Q Consensus 525 ~~~~s~~~~~l~s~~~--------------------d----g~i~vwd~~~~~~~~~~~~~~~-~~~---~~~~v~~~~~ 576 (882)
.++++|+...++.+.. | +.|..+|..+++........+. ... ...++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 3566776677776653 2 5899999998887766543221 110 011221 122
Q ss_pred e-cCCC---EEEEEeCCCcEEEEEccCCceEEEEEeccCC----------CC----------------------------
Q 047837 577 D-PTME---VVITVGQDKKINSFSIAAGKLIRSFKQAKDF----------GD---------------------------- 614 (882)
Q Consensus 577 s-p~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------~~---------------------------- 614 (882)
. .+|+ .++.++.+|.++++|.++|+.+..+...... +.
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4674 7888999999999999999998776532100 00
Q ss_pred -----cEEEEECCCCCEEEEEe---------------------------------CCCcEEEEEccCCeEEEEEccCCCC
Q 047837 615 -----PMKVTVDPSGSYLVCSY---------------------------------SNKSICLYDFISGEMVAKAMGHGEV 656 (882)
Q Consensus 615 -----v~~~~~spdg~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~h~~~ 656 (882)
-..++++|+..++++.. .+|.|.-||+.+|+.+-+...+ .+
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~ 487 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LP 487 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CC
Confidence 01356777655554432 2578999999999988766533 22
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCcc--cEEEecCCCeEEEe
Q 047837 657 ITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNFAQPAALS--PIIFCEEEDQKCRM 713 (882)
Q Consensus 657 v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~ 713 (882)
+..-.....+.+++.++.|+.++.||.++++.+..+..+..+. .+.+..++...+.+
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence 2221122246678889999999999999999998887666543 46665666544433
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.68 E-value=5e-06 Score=92.96 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=117.3
Q ss_pred EEEccCCCEEEEEeCC----------------CeEEEEeCccCccceeeeccceec----ccCCceEEEEEecCCC---E
Q 047837 526 VKFTCNGRKILSCSAD----------------RSLVVRDVVETNSAYKISRRHQQL----ASQGTVYDMDIDPTME---V 582 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~---~ 582 (882)
+++.++...++.++.+ +.|..+|..+++...+....+... ....++. +....+|+ .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence 5666666666666532 358999999887766554322100 0112221 23335774 5
Q ss_pred EEEEeCCCcEEEEEccCCceEEEEEeccCC-----------CCc--------------------------EEEEECCCCC
Q 047837 583 VITVGQDKKINSFSIAAGKLIRSFKQAKDF-----------GDP--------------------------MKVTVDPSGS 625 (882)
Q Consensus 583 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----------~~v--------------------------~~~~~spdg~ 625 (882)
++.++.+|.+.++|..+|+.+..+...... .++ ..++++|+..
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 778889999999999999998877522100 000 2467888877
Q ss_pred EEEEEe-------------------------------------CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCE
Q 047837 626 YLVCSY-------------------------------------SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKH 668 (882)
Q Consensus 626 ~l~~~~-------------------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 668 (882)
+|.+.. .+|.|..||+.+|+.+-++.. ...+....+...+..
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCE
Confidence 776653 357899999999998877653 233333333334567
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcccCCCCCc--ccEEEecCCCeEEE
Q 047837 669 IVSVGGDGLQRVKEKYGILPPRNFAQPAAL--SPIIFCEEEDQKCR 712 (882)
Q Consensus 669 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~ 712 (882)
++.++.||.++.+|..+++.+..+.....+ ..+.+..++...+.
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 778999999999999999888777655443 23444455543433
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=1.7e-05 Score=88.57 Aligned_cols=166 Identities=13% Similarity=0.012 Sum_probs=101.9
Q ss_pred cEEEEEcCCCceeEEEee--cC--------CCCEEEEEEccCCC---EEEEEeCCCeEEEEeCccCccceeeecccee--
Q 047837 500 TIHLYDVKRNFDLIESID--DH--------SAAVTAVKFTCNGR---KILSCSADRSLVVRDVVETNSAYKISRRHQQ-- 564 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~--~h--------~~~v~~~~~s~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-- 564 (882)
.|..+|..++ +.+-.++ .| ..++. +....+|+ .++.++.+|.+.++|..+++...........
T Consensus 273 ~v~Ald~~tG-~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDTG-MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTTC-CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecCCC-cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 5778888776 3333332 12 12221 22234674 5778889999999999888766554322100
Q ss_pred -----cccCCc--------------------------eEEEEEecCCCEEEEEe--------------------------
Q 047837 565 -----LASQGT--------------------------VYDMDIDPTMEVVITVG-------------------------- 587 (882)
Q Consensus 565 -----~~~~~~--------------------------v~~~~~sp~~~~l~~~~-------------------------- 587 (882)
.....+ -..++++|+..++++..
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 000000 13467888877776653
Q ss_pred -----------CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCC
Q 047837 588 -----------QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEV 656 (882)
Q Consensus 588 -----------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 656 (882)
.++.|..||+.+++.+.++... ..+....+...+.+++.++.||.|+.||.++|+.+.++......
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~ 507 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence 3478999999999998887622 22222333334667778999999999999999999888643221
Q ss_pred -eEEEEECCCCCEEE
Q 047837 657 -ITGVTFLPDCKHIV 670 (882)
Q Consensus 657 -v~~l~~s~d~~~l~ 670 (882)
-.-+.+..+|+.++
T Consensus 508 ~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 508 IGSPMTYSFKGKQYI 522 (571)
T ss_dssp CSCCEEEEETTEEEE
T ss_pred EeeeEEEEECCEEEE
Confidence 12234556776544
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=2.7e-06 Score=81.95 Aligned_cols=172 Identities=10% Similarity=0.094 Sum_probs=119.5
Q ss_pred EEEEEcCCC--cEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEE-eCCCeEEEEeCccCccceeeeccceeccc
Q 047837 491 FLASGGRDR--TIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSC-SADRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 491 ~l~~g~~dg--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
++.+.+.+| .|+++|+.++ +.+..+.-. .........+++..|... -.++.+.+||..+.+...++....
T Consensus 55 LyestG~~g~S~v~~vD~~Tg-kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----- 127 (262)
T 3nol_A 55 FYESTGLNGRSSIRKVDIESG-KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----- 127 (262)
T ss_dssp EEEEEEETTEEEEEEECTTTC-CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-----
T ss_pred EEEECCCCCCceEEEEECCCC-cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-----
Confidence 566666655 8999999987 555555432 233332233345555544 458899999999877665554321
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCC---CCcEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDF---GDPMKVTVDPSGSYLVCSYSNKSICLYDFISG 644 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~ 644 (882)
....+++|++.|+....+++|.++|..+.+.+.++...... ..++.+.|. +|+..|....++.|.+.|.++|
T Consensus 128 ----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 128 ----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp ----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred ----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence 22344467777777666788999999999999988743222 334567776 7877766667889999999999
Q ss_pred eEEEEEccC------------CCCeEEEEECCCCCEEEEEeC
Q 047837 645 EMVAKAMGH------------GEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 645 ~~~~~~~~h------------~~~v~~l~~s~d~~~l~s~~~ 674 (882)
+.+..+... ....+.|+|+|+++.|+..+.
T Consensus 203 ~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 203 KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 998887542 134588999999888888774
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.61 E-value=2.3e-05 Score=87.42 Aligned_cols=186 Identities=12% Similarity=0.137 Sum_probs=117.7
Q ss_pred EEEccCCCEEEEEeCC----------------CeEEEEeCccCccceeeeccceec----ccCCceEEEEEe-cCC---C
Q 047837 526 VKFTCNGRKILSCSAD----------------RSLVVRDVVETNSAYKISRRHQQL----ASQGTVYDMDID-PTM---E 581 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s-p~~---~ 581 (882)
+++.++...++.++.+ +.|..+|..+++........+... ....++. +... .+| .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 4566677777777665 379999999887766654332210 0011121 2222 567 4
Q ss_pred EEEEEeCCCcEEEEEccCCceEEEEEecc----------CCC---------------------------CcEEEEECCCC
Q 047837 582 VVITVGQDKKINSFSIAAGKLIRSFKQAK----------DFG---------------------------DPMKVTVDPSG 624 (882)
Q Consensus 582 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----------~~~---------------------------~v~~~~~spdg 624 (882)
.++.++.+|.+.++|.++|+.+....... ..+ .-..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 67778899999999999999988765211 011 01246778876
Q ss_pred CEEEEEe---------------------------------------CCCcEEEEEccCCeEEEEEccCCCCeEEEEECCC
Q 047837 625 SYLVCSY---------------------------------------SNKSICLYDFISGEMVAKAMGHGEVITGVTFLPD 665 (882)
Q Consensus 625 ~~l~~~~---------------------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d 665 (882)
.++.+.. .+|.|.-||+.+|+.+-+... ..++..-.....
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~ta 483 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATA 483 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEET
T ss_pred CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEec
Confidence 6665421 347899999999998776642 222221112235
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcccCCCCCc--ccEEEecCCCeEEEe
Q 047837 666 CKHIVSVGGDGLQRVKEKYGILPPRNFAQPAAL--SPIIFCEEEDQKCRM 713 (882)
Q Consensus 666 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~ 713 (882)
+..++.++.|+.++.||..+++.+..+..+..+ ..+.+..++...+.+
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence 667888999999999999999988877655433 345555566544433
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=2.2e-06 Score=82.61 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=106.1
Q ss_pred CCccccCCCCCeEEEeece----EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce
Q 047837 4 NHNIKKPDSSSKCAYVAGC----VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA 79 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~----~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~ 79 (882)
.++.|+ ++ .+....|. .|.++|+++++.+..+... .......+.++++.|..... .++.+.+||.++++
T Consensus 46 qGL~~~-~~--~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly~ltw-~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 46 EGFFYR-NG--YFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIVGLTW-KNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEE-TT--EEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEEEEES-SSSEEEEEETTTCC
T ss_pred ceEEEE-CC--EEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEEEEEe-eCCEEEEEECccCc
Confidence 356677 43 34444443 7999999999998887543 34444444445666666653 47899999999999
Q ss_pred eeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcc---cceeEEEEccCCCEEEEEC-CCcE
Q 047837 80 FISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSC---SAITSACFSSDAKFIVTAG-KKHL 153 (882)
Q Consensus 80 ~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~---~~v~~l~fs~d~~~l~~~~-~~~i 153 (882)
.+.++.... ....+++|++.|+.++ +.|.++|..+.+.+.++...... ..++.+.|. +|++.+..- .+.|
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence 999998533 3345557888887777 88999999999999988764321 334567876 777666664 4789
Q ss_pred EEEEcccCcc
Q 047837 154 KFWTIGSSAT 163 (882)
Q Consensus 154 ~iwd~~~~~~ 163 (882)
.+.|..+++.
T Consensus 195 ~vIDp~tG~V 204 (262)
T 3nol_A 195 VRIDPETGKV 204 (262)
T ss_dssp EEECTTTCBE
T ss_pred EEEECCCCcE
Confidence 9999988877
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.54 E-value=4.2e-05 Score=79.10 Aligned_cols=180 Identities=11% Similarity=0.022 Sum_probs=112.5
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEeec-----CCCCEEEEEEcc-CCCEEEEEeC-----------------CCeEEEEe
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESIDD-----HSAAVTAVKFTC-NGRKILSCSA-----------------DRSLVVRD 548 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~~-----h~~~v~~~~~s~-~~~~l~s~~~-----------------dg~i~vwd 548 (882)
|+.+...+.|..+|..++ . +..+.. .......+++.+ +|+.+++... ++.|..||
T Consensus 94 l~v~d~~~~i~~~d~~~g-~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGG-H-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEETTTEEEEECTTCE-E-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCC-E-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 444434445778886643 2 122211 123578899999 9987776533 36788888
Q ss_pred CccCccceeeeccceecccCCceEEEEEecCCCEEEEE-eCCCcEEEEEccCCc--eEEEEEeccCCCCcEEEEECCCCC
Q 047837 549 VVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV-GQDKKINSFSIAAGK--LIRSFKQAKDFGDPMKVTVDPSGS 625 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~spdg~ 625 (882)
..++... .+... ......++++|+++.|..+ ..++.|..|++.... ....+. ...+ +..++++++|+
T Consensus 172 ~~~~~~~-~~~~~------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 172 PSTKETT-LLLKE------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--KIPN-PGNIKRNADGH 241 (322)
T ss_dssp TTTTEEE-EEEEE------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE--ECSS-EEEEEECTTSC
T ss_pred CCCCEEE-EeccC------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE--eCCC-CCCeEECCCCC
Confidence 7644321 11111 1245679999999866655 556899999987532 122222 1223 78899999999
Q ss_pred EEEEEeC----------CCcEEEEEccCCeEEEEEccCC----CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 626 YLVCSYS----------NKSICLYDFISGEMVAKAMGHG----EVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 626 ~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
+.++... .+.|..+|. .|+.+..+.... ..++.+++ .+++++++....+.|..+++..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 7777654 467888886 577777775432 45777777 4666666656778899998753
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.51 E-value=0.0001 Score=82.19 Aligned_cols=170 Identities=11% Similarity=0.028 Sum_probs=101.1
Q ss_pred CcEEEEEcCCCceeEEEeec--CC--------CCEEEEEEc-cCC---CEEEEEeCCCeEEEEeCccCccceeeeccce-
Q 047837 499 RTIHLYDVKRNFDLIESIDD--HS--------AAVTAVKFT-CNG---RKILSCSADRSLVVRDVVETNSAYKISRRHQ- 563 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~--h~--------~~v~~~~~s-~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~- 563 (882)
+.|..+|..++ +..-.++. |. .++. +... .+| +.++.++.+|.++++|..+++..........
T Consensus 278 ~sv~Ald~~TG-~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 355 (599)
T 1w6s_A 278 MTIFGRDADTG-EAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTV 355 (599)
T ss_dssp SEEEEEETTTC-CEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred ceEEEEeCCCC-ceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCc
Confidence 36788888876 33333332 21 1222 2222 467 4677788999999999998876655432110
Q ss_pred ------ecccC--------------------------CceEEEEEecCCCEEEEEe------------------------
Q 047837 564 ------QLASQ--------------------------GTVYDMDIDPTMEVVITVG------------------------ 587 (882)
Q Consensus 564 ------~~~~~--------------------------~~v~~~~~sp~~~~l~~~~------------------------ 587 (882)
..... ..-..++++|+..++++..
T Consensus 356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 435 (599)
T 1w6s_A 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT 435 (599)
T ss_dssp CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence 00000 0112466777766554421
Q ss_pred ---------------CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc
Q 047837 588 ---------------QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG 652 (882)
Q Consensus 588 ---------------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 652 (882)
.++.|..||+.+|+.+.+.... .+...-.+...+.+++.++.|+.++.||.++|+.+-+++.
T Consensus 436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 3478999999999998887521 1222112233567888899999999999999999988764
Q ss_pred CCCCe-EEEEECCCCCE-EEEEe
Q 047837 653 HGEVI-TGVTFLPDCKH-IVSVG 673 (882)
Q Consensus 653 h~~~v-~~l~~s~d~~~-l~s~~ 673 (882)
..+.+ .-+.+..+|+. +++.+
T Consensus 513 ~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 513 PSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcEeccEEEEeCCEEEEEEEc
Confidence 33221 22455567763 44433
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=5.5e-05 Score=78.20 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=98.4
Q ss_pred CCCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecC-----------------CCCCeEEEEEcC-CCCEEEEee
Q 047837 2 KPNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHR-----------------MPKPLCCVAMSR-DGRYVAAGE 63 (882)
Q Consensus 2 ~~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~-----------------~~~~I~~va~sp-dg~~la~g~ 63 (882)
.|.++++.+++.-.++-..++.|..||.++++......... ....+..+++.+ +|++ .++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l-~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL-YIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE-EEEE
Confidence 37789999987634444456789999988765543321110 003578999998 6654 4443
Q ss_pred cCCCCeEEEEECCCceeeEEeec-----cccceeEEEECC-CCCEEEEEc-------------------CEEEEEEcCcc
Q 047837 64 SGPQPAVLVWDCANLAFISELKG-----HLYGVECIAFSP-DGEHLVTVG-------------------GYIYLWNWRSA 118 (882)
Q Consensus 64 ~~~d~~I~vwd~~t~~~~~~l~~-----h~~~V~~lafsp-dg~~Las~~-------------------~~i~iWd~~~g 118 (882)
. ...|.++|..+++. ..+.. .......+++.+ +|++.++-. +.|..||..++
T Consensus 99 ~--~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 C--YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp T--TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred C--CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 2 33588999877643 22221 123468899999 998777642 56888998777
Q ss_pred eeeeeeecCCcccceeEEEEccCCCEEEEECC--CcEEEEEccc
Q 047837 119 MLVMKLKANSSCSAITSACFSSDAKFIVTAGK--KHLKFWTIGS 160 (882)
Q Consensus 119 ~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~iwd~~~ 160 (882)
+.......- .....++|++|++.|.++.. +.|..+++..
T Consensus 176 ~~~~~~~~~---~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 176 ETTLLLKEL---HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEEEEEE---SCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEEeccCC---ccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 654332221 45678999999997766643 6788888764
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.50 E-value=8.4e-05 Score=76.10 Aligned_cols=170 Identities=11% Similarity=0.024 Sum_probs=98.8
Q ss_pred cEEEEEcCCCceeEEEee-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCcccee-eeccc---eecccCCceEEE
Q 047837 500 TIHLYDVKRNFDLIESID-DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYK-ISRRH---QQLASQGTVYDM 574 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~---~~~~~~~~v~~~ 574 (882)
.|..++..++ +...... ........++..+++..+++-..++.|+++|...+..... ..... ...........+
T Consensus 96 ~v~~~d~~~g-~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 96 PVVSLVKSDG-TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp EEEEEECTTS-CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred eEEEEcCCCC-eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 4666665554 2221111 1222345555555555555555688888888764311111 00000 000111234455
Q ss_pred EEecCCCEEEEEe-CCCcEEEEEccC-Cce--EEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEE--
Q 047837 575 DIDPTMEVVITVG-QDKKINSFSIAA-GKL--IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVA-- 648 (882)
Q Consensus 575 ~~sp~~~~l~~~~-~d~~v~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~-- 648 (882)
+|+++.|+.+. ..+.|..||+.. ++. ...+. ....+..++++++|+++++....+.|.++|.. |+...
T Consensus 175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~ 248 (306)
T 2p4o_A 175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA 248 (306)
T ss_dssp --EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred --CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe
Confidence 88887665554 567899999874 432 22222 12457789999999988887778899999975 66533
Q ss_pred EEccCCCCeEEEEEC---CCCCEEEEEeCCC
Q 047837 649 KAMGHGEVITGVTFL---PDCKHIVSVGGDG 676 (882)
Q Consensus 649 ~~~~h~~~v~~l~~s---~d~~~l~s~~~dg 676 (882)
.+.......++++|. +|++.|+.+...+
T Consensus 249 ~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 249 QAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 233334568999998 8988877766544
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=1.9e-05 Score=76.07 Aligned_cols=172 Identities=9% Similarity=0.022 Sum_probs=119.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
+..+.+.+|.|+++|+.++ +.+..+......-..+++.. ++..+..-.++.+.+||..+.+...++.... .
T Consensus 67 Ly~stG~~g~v~~iD~~Tg-kv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-------e 137 (268)
T 3nok_A 67 FFESTGHQGTLRQLSLESA-QPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-------E 137 (268)
T ss_dssp EEEEETTTTEEEECCSSCS-SCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS-------C
T ss_pred EEEEcCCCCEEEEEECCCC-cEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC-------c
Confidence 7788888899999999987 44444422221223455542 3444455578999999999877666554321 1
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCC---CcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFG---DPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMV 647 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~ 647 (882)
- ..+++|++.|+.+..+++|.++|.++.+.+.++....+.. .++.+.|. +|+..|....+..|.+-|.++|+.+
T Consensus 138 G--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 138 G--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp C--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred e--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence 1 2334678888887778899999999999999887433322 34667776 7776666667889999999999998
Q ss_pred EEEccC-------------CCCeEEEEECCCCCEEEEEeC
Q 047837 648 AKAMGH-------------GEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 648 ~~~~~h-------------~~~v~~l~~s~d~~~l~s~~~ 674 (882)
..+... ....+.|+|+|+++.|+..+.
T Consensus 215 ~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 215 GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 887532 135688999998777776663
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.50 E-value=7e-05 Score=83.72 Aligned_cols=170 Identities=9% Similarity=0.052 Sum_probs=102.8
Q ss_pred CcEEEEEcCCCceeEEEee--cCC--------CCEEEEEEc-cCCC---EEEEEeCCCeEEEEeCccCccceeeecccee
Q 047837 499 RTIHLYDVKRNFDLIESID--DHS--------AAVTAVKFT-CNGR---KILSCSADRSLVVRDVVETNSAYKISRRHQQ 564 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~--~h~--------~~v~~~~~s-~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 564 (882)
+.|..+|..++ +.+-.++ .|. .++. +... .+|+ .++.++.+|.++++|..+++...........
T Consensus 291 ~~v~AlD~~TG-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 291 SGQVGVDPSSG-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI 368 (582)
T ss_dssp SEEEEECTTTC-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred ceEEEEeCCCC-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence 57888888876 3333332 221 1221 2221 4674 6788999999999999888766544322100
Q ss_pred ------------------cc----------cCC-----------ceEEEEEecCCCEEEEEe------------------
Q 047837 565 ------------------LA----------SQG-----------TVYDMDIDPTMEVVITVG------------------ 587 (882)
Q Consensus 565 ------------------~~----------~~~-----------~v~~~~~sp~~~~l~~~~------------------ 587 (882)
.. ... .-..++++|+..++++..
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 00 000 012456777655554432
Q ss_pred ---------------CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEcc
Q 047837 588 ---------------QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMG 652 (882)
Q Consensus 588 ---------------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 652 (882)
.++.|..||+.+|+.+.+.... ..+..-.....+.+++.++.|+.++.||.++|+.+.+++.
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 2578999999999998887632 1222212222467888899999999999999999988875
Q ss_pred CCCCe-EEEEECCCCC-EEEEEe
Q 047837 653 HGEVI-TGVTFLPDCK-HIVSVG 673 (882)
Q Consensus 653 h~~~v-~~l~~s~d~~-~l~s~~ 673 (882)
..+.+ .-+.|..+|+ |+++.+
T Consensus 526 ~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 526 GSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEc
Confidence 43322 2266667876 444433
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.49 E-value=1.5e-05 Score=76.12 Aligned_cols=149 Identities=11% Similarity=0.022 Sum_probs=105.1
Q ss_pred CCccccCCCCCeEEEeece----EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce
Q 047837 4 NHNIKKPDSSSKCAYVAGC----VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA 79 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~----~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~ 79 (882)
.++.|+++ .+....|. .|.++|+++++.+..+.... ......+.++++.|.... ..++.+.+||.++++
T Consensus 24 qGL~~~~~---~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly~lt-w~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 24 EGLFYLRG---HLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLIQLT-WRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEEETT---EEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEEEEE-SSSSEEEEEETTTTE
T ss_pred ccEEEECC---EEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEEEEE-eeCCEEEEEECCcCc
Confidence 35677762 44444443 79999999999988765432 343344444556666654 347899999999999
Q ss_pred eeEEeeccccceeEEEECCCCCEEEEEc--CEEEEEEcCcceeeeeeecCCcc---cceeEEEEccCCCEEEEEC-CCcE
Q 047837 80 FISELKGHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSC---SAITSACFSSDAKFIVTAG-KKHL 153 (882)
Q Consensus 80 ~~~~l~~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~---~~v~~l~fs~d~~~l~~~~-~~~i 153 (882)
.+.++.....+ ..+++|++.|..++ +.|.++|.++.+.+.++....+. ..++.+.+. +|+..+..- .+.|
T Consensus 97 ~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 97 PRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 99999854333 34456788777777 99999999999999888764321 244566665 677666654 4789
Q ss_pred EEEEcccCcc
Q 047837 154 KFWTIGSSAT 163 (882)
Q Consensus 154 ~iwd~~~~~~ 163 (882)
.+.|..+++.
T Consensus 173 ~vIDp~tG~V 182 (243)
T 3mbr_X 173 ARIDPASGKV 182 (243)
T ss_dssp EEECTTTCBE
T ss_pred EEEECCCCCE
Confidence 9999988876
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.42 E-value=4.1e-05 Score=73.71 Aligned_cols=134 Identities=4% Similarity=0.020 Sum_probs=92.4
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
+.+....++.+.+||..+. +.+.++...... ..+ .+|++.|+.+..++.|.++|..+.+....+..... ...-..
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl-~~~~ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~ 182 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPP-QRERTTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVEL 182 (268)
T ss_dssp EEEEESSSCEEEEEETTTT-EEEEEEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCC
T ss_pred EEEEEccCCEEEEEECCcC-cEEEEEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-Cccccc
Confidence 4455667889999999886 777777643222 333 35888888888899999999987765555433221 111124
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEecc-----------CCCCcEEEEECCCCCE-EEEE
Q 047837 571 VYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAK-----------DFGDPMKVTVDPSGSY-LVCS 630 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~spdg~~-l~~~ 630 (882)
++.+.|. +|+..+....+..|.+.|.++|+.+..+...+ ...-.+.||++|+++. +++|
T Consensus 183 lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 183 INELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 5677777 77766666678899999999999999887431 1235688999997654 4555
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=0.00012 Score=69.98 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=116.5
Q ss_pred EEEEEcCC--CcEEEEEcCCCceeEEEeecCCC-CEEEEEEccCCCEEE-EEeCCCeEEEEeCccCccceeeeccceecc
Q 047837 491 FLASGGRD--RTIHLYDVKRNFDLIESIDDHSA-AVTAVKFTCNGRKIL-SCSADRSLVVRDVVETNSAYKISRRHQQLA 566 (882)
Q Consensus 491 ~l~~g~~d--g~v~iwd~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 566 (882)
+..+.+.+ ..|+.+|+.++ +.+....-... .-..+++ ++..|. ..-.++.+.+||..+.+...++....
T Consensus 33 LyestG~~g~S~v~~vD~~tg-kv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~---- 105 (243)
T 3mbr_X 33 LYESTGETGRSSVRKVDLETG-RILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG---- 105 (243)
T ss_dssp EEEEECCTTSCEEEEEETTTC-CEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS----
T ss_pred EEEECCCCCCceEEEEECCCC-CEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC----
Confidence 55666654 48999999987 55555543222 1123444 344444 45568999999998777665554321
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCC---CCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 567 SQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDF---GDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 567 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
. ...+.+++..|+....+++|.++|..+.+.+.++....+. ..++.+.+. +|+..|....+..|.+.|.++
T Consensus 106 ---~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 106 ---E--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp ---C--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred ---C--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence 1 2334467777777677889999999999999888743322 344566665 677666665678999999999
Q ss_pred CeEEEEEccC-------------CCCeEEEEECCCCCEEEEEeC
Q 047837 644 GEMVAKAMGH-------------GEVITGVTFLPDCKHIVSVGG 674 (882)
Q Consensus 644 ~~~~~~~~~h-------------~~~v~~l~~s~d~~~l~s~~~ 674 (882)
|+.+..+... ....+.|+++|+++.|+..+.
T Consensus 180 G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 180 GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9998887521 125578999998888777774
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.37 E-value=0.00043 Score=67.25 Aligned_cols=205 Identities=13% Similarity=0.158 Sum_probs=133.9
Q ss_pred eccceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee-cCCCCEEEEEEccCCCEEEEEeC
Q 047837 462 AHDAEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID-DHSAAVTAVKFTCNGRKILSCSA 540 (882)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~ 540 (882)
+-...+..++++|++. .++++...++.|...|.. + +.++.+. .-....-.|++.+++.++++.-.
T Consensus 24 g~~~~lSGla~~~~~~------------~L~aV~d~~~~I~~ld~~-g-~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~ 89 (255)
T 3qqz_A 24 GITNNISSLTWSAQSN------------TLFSTINKPAAIVEMTTN-G-DLIRTIPLDFVKDLETIEYIGDNQFVISDER 89 (255)
T ss_dssp TCCSCEEEEEEETTTT------------EEEEEEETTEEEEEEETT-C-CEEEEEECSSCSSEEEEEECSTTEEEEEETT
T ss_pred CcccCcceeEEeCCCC------------EEEEEECCCCeEEEEeCC-C-CEEEEEecCCCCChHHeEEeCCCEEEEEECC
Confidence 3445688888888754 255667778889999987 4 5555543 22356888999998887777667
Q ss_pred CCeEEEEeCccCccceeeeccc---eecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc---CCceEEEEEe-----c
Q 047837 541 DRSLVVRDVVETNSAYKISRRH---QQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA---AGKLIRSFKQ-----A 609 (882)
Q Consensus 541 dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~---~~~~~~~~~~-----~ 609 (882)
++.+.++++............. .....+.....++|+|++..|.++.+.....+|.+. ....+..+.. .
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~ 169 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ 169 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc
Confidence 7889999887654321111111 112234567899999999877777766555666554 1122222221 1
Q ss_pred cCCCCcEEEEECCC-CCEEEEEeCCCcEEEEEccCCeEEEEEccCC---------CCeEEEEECCCCCEEEEEeCCCeEE
Q 047837 610 KDFGDPMKVTVDPS-GSYLVCSYSNKSICLYDFISGEMVAKAMGHG---------EVITGVTFLPDCKHIVSVGGDGLQR 679 (882)
Q Consensus 610 ~~~~~v~~~~~spd-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~s~d~~~l~s~~~dg~i~ 679 (882)
.+...+..++++|. +++++.....+.+.++|.. |+.+..+.-.. ..--.|+|.++|+..+ .++-+.++
T Consensus 170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y 247 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFY 247 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEE
T ss_pred cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEE
Confidence 23456889999995 5667777778899999965 66666553221 2668999999998555 57666666
Q ss_pred EEe
Q 047837 680 VKE 682 (882)
Q Consensus 680 vwd 682 (882)
.+.
T Consensus 248 ~f~ 250 (255)
T 3qqz_A 248 RFT 250 (255)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.00015 Score=77.85 Aligned_cols=153 Identities=8% Similarity=0.026 Sum_probs=95.4
Q ss_pred CCCCccccC-CCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCC--C-eEEEEECCC
Q 047837 2 KPNHNIKKP-DSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQ--P-AVLVWDCAN 77 (882)
Q Consensus 2 ~~~~~~~~p-d~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d--~-~I~vwd~~t 77 (882)
-|..++++| ++...++.-.++.|.++|+++++..... ... .....|+|+++|++|.++..+.. . .+.+.+ ..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~--~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGL--SKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCC--SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCC--CCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CC
Confidence 377889998 3332222222378999999877765544 322 57899999999997777643211 1 344444 33
Q ss_pred ceee--EEeeccccceeEEEECC-CCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--
Q 047837 78 LAFI--SELKGHLYGVECIAFSP-DGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-- 150 (882)
Q Consensus 78 ~~~~--~~l~~h~~~V~~lafsp-dg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-- 150 (882)
+... ..+. .......++++| +|.++++-. +.|..++..++.......... ......++|+|++++|..+..
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTT
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCC
Confidence 3322 2332 223457889999 555444433 899999988776533222221 145789999999996665543
Q ss_pred CcEEEEEccc
Q 047837 151 KHLKFWTIGS 160 (882)
Q Consensus 151 ~~i~iwd~~~ 160 (882)
+.|..++.+.
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 6788888764
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.32 E-value=0.00013 Score=78.35 Aligned_cols=152 Identities=9% Similarity=0.016 Sum_probs=91.8
Q ss_pred CCCccccCC-CCCeEEEeec-eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC--CCe-EEEEECCC
Q 047837 3 PNHNIKKPD-SSSKCAYVAG-CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP--QPA-VLVWDCAN 77 (882)
Q Consensus 3 ~~~~~~~pd-~~~~~~~~~~-~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~--d~~-I~vwd~~t 77 (882)
|.++++.|+ +.+.+.+... +.|..+|+++++..... ... .....++++++|+ |.++..+. +.. +...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~--~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNI--GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCC--SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCC--CCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 778999996 3334433332 78999999888776553 322 5699999999999 54443211 112 33333322
Q ss_pred cee-eEEeeccccceeEEEECC-CCCEEEEEc--CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--C
Q 047837 78 LAF-ISELKGHLYGVECIAFSP-DGEHLVTVG--GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--K 151 (882)
Q Consensus 78 ~~~-~~~l~~h~~~V~~lafsp-dg~~Las~~--~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--~ 151 (882)
+.. ...+. .-.....++++| +|.+.++-. +.|+.+|..++.....+........-..++|+|+++.|..+.. +
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01222 233456789999 555444433 8899999987876333322211133457999999996666543 5
Q ss_pred cEEEEEcc
Q 047837 152 HLKFWTIG 159 (882)
Q Consensus 152 ~i~iwd~~ 159 (882)
.|..++.+
T Consensus 296 ~I~~~~~d 303 (433)
T 4hw6_A 296 CIYRVDYN 303 (433)
T ss_dssp EEEEEEBC
T ss_pred EEEEEeCC
Confidence 78887765
No 271
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.30 E-value=0.014 Score=68.12 Aligned_cols=494 Identities=11% Similarity=-0.004 Sum_probs=251.1
Q ss_pred cCCCCCeEEEeeceEEEEEECCCCceEEEEEec--CCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeec
Q 047837 9 KPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSH--RMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKG 86 (882)
Q Consensus 9 ~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h--~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~ 86 (882)
.-|..+.+-+....-+..||-.. ...+... .....|.++....+|. |.+|+. + -+..||..+.+.......
T Consensus 28 ~qD~~G~lWigT~~GL~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~--~-Gl~~yd~~~~~f~~~~~~ 100 (758)
T 3ott_A 28 LQDSEGLIWIGSNKGLFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTY-LYMGTD--N-GILVYNYRADRYEQPETD 100 (758)
T ss_dssp EECTTSCEEEEESSCEEEECSSC---EEECSCTTSTTSSCEEEEEEETTTE-EEEEET--T-EEEEEETTTTEECCCSCC
T ss_pred EECCCCCEEEEECCCccccCCCc---eEEEEccCCCCCceEEEEEEcCCCc-EEEEeC--C-CeEEEeCCCCEEECcccC
Confidence 34545555555555577787432 1111111 1114699998888774 555543 3 388999988754331111
Q ss_pred cccceeEEEECCCCCEEEEEcCEEEEEEcCcceeeeeee--cCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCccc
Q 047837 87 HLYGVECIAFSPDGEHLVTVGGYIYLWNWRSAMLVMKLK--ANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATA 164 (882)
Q Consensus 87 h~~~V~~lafspdg~~Las~~~~i~iWd~~~g~~~~~~~--~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~ 164 (882)
....|.++.. .+|.+.+...+-|..+|..+++...... .......|.++....++.+.+... +.+..++..++...
T Consensus 101 ~~~~i~~i~~-~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 101 FPTDVRTMAL-QGDTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFE 178 (758)
T ss_dssp CCSCEEEEEE-ETTEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTTEEE
T ss_pred CCceEEEEEe-cCCcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCCceE
Confidence 2345777765 4565444433678889987765432201 111125688888888888877554 45667776544320
Q ss_pred eeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceee
Q 047837 165 RTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVK 244 (882)
Q Consensus 165 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~ 244 (882)
..... .. ... ....+
T Consensus 179 --~~~~~-----~~-~~~---------------------------------------------------------~~~~i 193 (758)
T 3ott_A 179 --GIPLP-----VH-SSQ---------------------------------------------------------SNLFV 193 (758)
T ss_dssp --EECCC-----CC-TTC---------------------------------------------------------SSCCE
T ss_pred --EecCC-----Cc-ccc---------------------------------------------------------cccee
Confidence 00000 00 000 00012
Q ss_pred eeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeE
Q 047837 245 NGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKL 324 (882)
Q Consensus 245 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 324 (882)
.++...+++..|.+|+. +-+..++..+++...... + ....+.++....+|.+
T Consensus 194 ~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~-------------------------l--~~~~i~~i~~d~~g~l 245 (758)
T 3ott_A 194 NSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA-------------------------F--HNNSIKSLALDGNGDL 245 (758)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE-------------------------E--EEEEEEEEEECTTCCE
T ss_pred EEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC-------------------------C--CCCeEEEEEEcCCCCE
Confidence 45556666665555654 456777766543211000 0 0112456777778898
Q ss_pred EEEeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCc
Q 047837 325 VVVYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQS 404 (882)
Q Consensus 325 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~ 404 (882)
.+++. +.+.+++..+.... .+...... ........|.++... .++.+ -.|+..| +.+..... .
T Consensus 246 WigT~-~Gl~~~~~~~~~~~----~~~~~~~~--------~~~l~~~~i~~i~~D-~~g~l-WiGT~~G-l~~~~~~~-~ 308 (758)
T 3ott_A 246 LAGTD-NGLYVYHNDTTPLQ----HIIHDSRN--------IQSLTNNIIWNIFAD-QEHNI-WLGTDYG-ISLSRYNS-A 308 (758)
T ss_dssp EEEET-TEEEEECCTTSCCE----EECCCTTC--------TTSCSCSCEEEEEEC-TTCCE-EEEESSS-EEEECCCC--
T ss_pred EEEeC-CceeEEecCCCcEE----EEEcCCCC--------cCcCCcCeEEEEEEc-CCCCE-EEEeCCc-ccccccCC-c
Confidence 88885 45788887654221 11110000 001123456666655 44544 3444555 44433211 1
Q ss_pred eeeecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCcccee
Q 047837 405 ELSKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEE 484 (882)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 484 (882)
... ....... -......|.++....++.
T Consensus 309 -~~~----------------------------------------~~~~~~~----~~~~~~~v~~i~~D~~g~------- 336 (758)
T 3ott_A 309 -LQF----------------------------------------IPISQIT----GTGDGNQFYSLFRDSKGF------- 336 (758)
T ss_dssp -CEE----------------------------------------EEHHHHS----CSCCCCBEEEEEECTTCC-------
T ss_pred -eeE----------------------------------------EecccCC----CCCCCceEEEEEEcCCCC-------
Confidence 000 0000000 000112355555544444
Q ss_pred ccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEee-------cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccce
Q 047837 485 VTDSHYFLASGGRDRTIHLYDVKRNF-DLIESID-------DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAY 556 (882)
Q Consensus 485 ~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 556 (882)
|-.|+.+| +..++..++. .....+. -....|.++.-..+|++.+. +. +-+..||..++.. .
T Consensus 337 -------lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~-~ 405 (758)
T 3ott_A 337 -------YWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQF-I 405 (758)
T ss_dssp -------EEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEE-E
T ss_pred -------EEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcE-E
Confidence 44444444 5556544321 1111111 01245888988888876654 44 4588999875432 1
Q ss_pred eeec-cceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCC-----ceE---EEEEe-cc-CCCCcEEEEECCCCC
Q 047837 557 KISR-RHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAG-----KLI---RSFKQ-AK-DFGDPMKVTVDPSGS 625 (882)
Q Consensus 557 ~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-----~~~---~~~~~-~~-~~~~v~~~~~spdg~ 625 (882)
.... ..........|.++...+++.+.+ |+..+-|..+|..+. ... ..+.. .+ ....|.++...++|+
T Consensus 406 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 484 (758)
T 3ott_A 406 HYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN 484 (758)
T ss_dssp EEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC
T ss_pred EeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCC
Confidence 1111 000001234688888877776544 566666888886531 111 11110 01 223588999999999
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEEEcc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 047837 626 YLVCSYSNKSICLYDFISGEMVAKAMG---HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGIL 687 (882)
Q Consensus 626 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~ 687 (882)
+.+.++..+-|..+|..+++....... ....+.++....+|.+.+. +..| +..++..+..
T Consensus 485 lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~ 547 (758)
T 3ott_A 485 VWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDES 547 (758)
T ss_dssp EEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CC
T ss_pred EEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCc
Confidence 877433445588899888765433211 1246788888888887764 4445 7778875543
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.28 E-value=0.00029 Score=72.03 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=90.4
Q ss_pred CCCccccCCCCCeEEEe-eceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCC-CeEEEEECCCcee
Q 047837 3 PNHNIKKPDSSSKCAYV-AGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQ-PAVLVWDCANLAF 80 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~-~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d-~~I~vwd~~t~~~ 80 (882)
|.++++.|++. .++.- .++.|..||.+.+ ....+. -. .....++++++|+++++.. +.+ ..|..+|..+++.
T Consensus 34 pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~~~-~~--~~p~gia~~~dG~l~vad~-~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 34 LENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIHAT-VE--GKVSGLAFTSNGDLVATGW-NADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEEEE-CS--SEEEEEEECTTSCEEEEEE-CTTSCEEEEEECTTSCE
T ss_pred cceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEEEe-CC--CCceeEEEcCCCcEEEEec-cCCcceEEEEcCCCCeE
Confidence 56788999876 33332 3578999998754 333332 22 5789999999999655543 222 3577788888876
Q ss_pred eEEeec-cccceeEEEECCCCCEEEEEc--CEEEEEEcCccee-eeeee-------cCCcccceeEEEEccCCCEEEEEC
Q 047837 81 ISELKG-HLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSAML-VMKLK-------ANSSCSAITSACFSSDAKFIVTAG 149 (882)
Q Consensus 81 ~~~l~~-h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g~~-~~~~~-------~~~~~~~v~~l~fs~d~~~l~~~~ 149 (882)
...... .......+++.+++..+++-. +.|+++|..+++. +.... ..........+ ++|++.|.++.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 433221 122234566666665555543 8999999876531 21110 00111234555 88888776665
Q ss_pred C--CcEEEEEccc
Q 047837 150 K--KHLKFWTIGS 160 (882)
Q Consensus 150 ~--~~i~iwd~~~ 160 (882)
. +.|..+++..
T Consensus 186 ~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 186 TEKMLLLRIPVDS 198 (306)
T ss_dssp TTTTEEEEEEBCT
T ss_pred CCCCEEEEEEeCC
Confidence 3 6788888864
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.27 E-value=0.0012 Score=67.69 Aligned_cols=139 Identities=7% Similarity=0.011 Sum_probs=91.6
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC---ceeeE-Eeeccccc
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN---LAFIS-ELKGHLYG 90 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t---~~~~~-~l~~h~~~ 90 (882)
.++|...+.|...|+++......+.. - ..+.+++|++++..|..... .++.|..+++.+ +.... .+...-..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~-~--~~p~g~~~d~~~~~ly~~D~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPN-L--RNVVALDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECS-C--SSEEEEEEETTTTEEEEEET-TTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECCCeEEEEECCCcceEehhcC-C--CceEEEEEEeCCCEEEEEEC-CCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 57788888999999998876665432 2 57899999998777777653 367899999876 22222 23333345
Q ss_pred eeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEcc
Q 047837 91 VECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIG 159 (882)
Q Consensus 91 V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~ 159 (882)
...|++.+.+..|..++ +.|.+.|.........+.... .....+++.|++..|..+.. +.|...+++
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC--CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 68999998776666655 899999987543332232222 56789999996665554432 456666654
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.26 E-value=0.0011 Score=69.99 Aligned_cols=142 Identities=8% Similarity=-0.063 Sum_probs=96.1
Q ss_pred CCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecccccee
Q 047837 13 SSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVE 92 (882)
Q Consensus 13 ~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~ 92 (882)
...+++...+.|...++..+.....+.+. ..+..++|++.+..|..... ..+.|..++.........+........
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~~~---~~~~gl~~d~~~~~ly~~D~-~~~~I~r~~~~g~~~~~~~~~~~~~p~ 162 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEYTLLLNNL---ENAIALDFHHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTGLESPG 162 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCCEEEECSC---SCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCCEEEEECSSCSCCC
T ss_pred cceeEeecCccceeeccCCCcEEEEecCC---CccEEEEEecCCCeEEEEeC-CCCcEEEEecCCCCcEEEEeCCCCCcc
Confidence 34677777788999999877665554332 56899999987777776653 367899999987665444443344567
Q ss_pred EEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEccc
Q 047837 93 CIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIGS 160 (882)
Q Consensus 93 ~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~~ 160 (882)
.|++.+.+..|...+ +.|.+.++........+.... .....+++.|++..|..+.. +.|...+++.
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l--~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL--EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC--SCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC--CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 899998777776665 788888876543333232222 56789999997776665543 3466666543
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.24 E-value=0.0033 Score=65.26 Aligned_cols=141 Identities=9% Similarity=-0.064 Sum_probs=95.6
Q ss_pred CeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeE
Q 047837 14 SKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVEC 93 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~ 93 (882)
..+++...+.|...++........+.+. ..+..++|++.+..|..... ..+.|..+++........+.........
T Consensus 45 ~~ll~~~~~~I~~i~~~g~~~~~~~~~~---~~~~~l~~d~~~~~ly~~D~-~~~~I~r~~~~g~~~~~~~~~~~~~p~g 120 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRSEYTLLLNNL---ENAIALDFHHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTGLESPGG 120 (349)
T ss_dssp CEEEEECBSCEEEECTTSCCEEEEECSC---SCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred ceeEeecccceEEEeCCCCeeEEeecCC---CceEEEEEeccccEEEEEec-cCCceEEEecCCCCceEEEeCCCCCccE
Confidence 4577777788999999876655444332 56899999987777777653 3678999999876544444433455688
Q ss_pred EEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEccc
Q 047837 94 IAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIGS 160 (882)
Q Consensus 94 lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~~ 160 (882)
|++.+.+..|..++ +.|.+.+.........+.... .....++++|++..|..+.. +.|...+++.
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l--~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL--EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC--SCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC--CCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 99998777766665 899999986543332222222 56789999997666655543 4566666554
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.20 E-value=0.00026 Score=81.13 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCceeEEEeecCC---------CCEEEEEEcc-CCCEEEEEeCCC-----------eEEEEeCccCccce
Q 047837 498 DRTIHLYDVKRNFDLIESIDDHS---------AAVTAVKFTC-NGRKILSCSADR-----------SLVVRDVVETNSAY 556 (882)
Q Consensus 498 dg~v~iwd~~~~~~~~~~~~~h~---------~~v~~~~~s~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~ 556 (882)
...+..||..+.. .......+. ..-.++.|.. ++++++.|+.++ .|.+||..+..-.
T Consensus 368 ~~~v~~yd~~~~~-w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~- 445 (656)
T 1k3i_A 368 STAMNWYYTSGSG-DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT- 445 (656)
T ss_dssp SSEEEEEECSTTC-EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE-
T ss_pred ccceeeeecCCcc-eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee-
Confidence 3467888887652 122221111 1234455543 777788877542 5778887643311
Q ss_pred eeeccceecccCCceEEEEEecCCCEEEEEeCC-----------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCC
Q 047837 557 KISRRHQQLASQGTVYDMDIDPTMEVVITVGQD-----------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGS 625 (882)
Q Consensus 557 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 625 (882)
... . ..+.....-.+++..|++++++.|+.+ ..+.+||..+++-...-.............+.|||+
T Consensus 446 ~~~-~-~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~ 523 (656)
T 1k3i_A 446 VFA-S-NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR 523 (656)
T ss_dssp EEC-T-TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC
T ss_pred EEc-c-CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE
Confidence 111 0 011111123455677899999999864 468999998765332111112223344566789999
Q ss_pred EEEEEeC
Q 047837 626 YLVCSYS 632 (882)
Q Consensus 626 ~l~~~~~ 632 (882)
+++.|+.
T Consensus 524 v~v~GG~ 530 (656)
T 1k3i_A 524 VFNGGGG 530 (656)
T ss_dssp EEEEECC
T ss_pred EEecCCC
Confidence 9999985
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.18 E-value=0.003 Score=65.63 Aligned_cols=205 Identities=10% Similarity=0.004 Sum_probs=125.6
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEE-EEEeCCCeE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKI-LSCSADRSL 544 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i 544 (882)
....++|++... .++.+-...+.|..+++... ...............+++.+.+..| ++-...+.|
T Consensus 74 ~~~~l~~d~~~~------------~ly~~D~~~~~I~r~~~~g~-~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 74 NAIALDFHHRRE------------LVFWSDVTLDRILRANLNGS-NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp CEEEEEEETTTT------------EEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEEecccc------------EEEEEeccCCceEEEecCCC-CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeE
Confidence 356777776544 14455556788988988764 2222333333456789998755444 555567889
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe-CC-CcEEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QD-KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
.+.++.... ...+... .......++++|.+..|+... .+ +.|..+++.. .....+. .........++++|
T Consensus 141 ~~~~~dG~~-~~~l~~~-----~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~-~~~~~~PnGla~d~ 212 (349)
T 3v64_C 141 EVANLDGAH-RKVLLWQ-----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIA-DTHLFWPNGLTIDY 212 (349)
T ss_dssp EEEETTSCS-CEEEECT-----TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESC-CSSCSCEEEEEEET
T ss_pred EEEcCCCCc-eEEEEeC-----CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEE-ECCCCCcceEEEeC
Confidence 999987432 2222111 124578999999666555444 44 6788888763 3333332 13345688999998
Q ss_pred CCCEEEEE-eCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 623 SGSYLVCS-YSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 623 dg~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
++..|..+ ...+.|..+|+........+.........|++ .++..+++-...+.|...+..++.....+
T Consensus 213 ~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 213 AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 76666554 45678999998654333334334456778888 34555555557788888886555544433
No 278
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.18 E-value=0.031 Score=67.34 Aligned_cols=175 Identities=11% Similarity=0.159 Sum_probs=103.7
Q ss_pred CcEEEEEcCCCceeEEEee-cCCCCEEEEE---EccC-CCEEEEEe----------CCCeEEEEeCccCccceeeeccce
Q 047837 499 RTIHLYDVKRNFDLIESID-DHSAAVTAVK---FTCN-GRKILSCS----------ADRSLVVRDVVETNSAYKISRRHQ 563 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~-~h~~~v~~~~---~s~~-~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~ 563 (882)
+.|++.|..+. +.+..+. .....+.+++ |..+ ..+|++|+ ..|.|.+|++... .. ++. +.
T Consensus 807 s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL-~lv--~~ 881 (1158)
T 3ei3_A 807 HNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KL-QTV--AE 881 (1158)
T ss_dssp EEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EE-EEE--EE
T ss_pred EEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EE-EEE--EE
Confidence 35778887654 4433332 2233445544 3322 46888776 3578999998732 21 211 11
Q ss_pred ecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEc--
Q 047837 564 QLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDF-- 641 (882)
Q Consensus 564 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~-- 641 (882)
....+.+++++-- +| +|+++ ...+|++|++...+.++ ... .+...+..+.....+.++++|..-..|.++..
T Consensus 882 -~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~-~~~-~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 882 -KEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR-TEC-NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp -EEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE-EEE-EECCCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred -EEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE-EEe-eccccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 1224678887644 35 44443 34789999998766555 221 12223443344345789999988777777554
Q ss_pred cCCeEEEEEc-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 642 ISGEMVAKAM-GHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 642 ~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
..++....-. .+...++++.|-.++ .++.+..+|.+.+.....
T Consensus 956 ~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 3444433222 255688899887554 667799999999988754
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.0006 Score=73.00 Aligned_cols=156 Identities=9% Similarity=0.017 Sum_probs=96.7
Q ss_pred CCCccccCC-CCCeEEEee-ceEEEEEECCCCceEEEEEecC-CCCCeEEEEE-------cCCCCEEEEeecCC-----C
Q 047837 3 PNHNIKKPD-SSSKCAYVA-GCVLVVYDVDSSTQSHLMVSHR-MPKPLCCVAM-------SRDGRYVAAGESGP-----Q 67 (882)
Q Consensus 3 ~~~~~~~pd-~~~~~~~~~-~~~v~vwd~~~~~~~~~l~~h~-~~~~I~~va~-------spdg~~la~g~~~~-----d 67 (882)
|+.++|.|. ....++..- ++.|++.|++++....++..-. .-.....|+| +++|++|.++.... .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 667899984 332222222 3689999999887766553211 1135899999 99999777775432 1
Q ss_pred CeEEEEECCC-ceee-----EEeeccccceeEEEECCCCCEEEEEc---CEEEEEEcC-------ccee-----------
Q 047837 68 PAVLVWDCAN-LAFI-----SELKGHLYGVECIAFSPDGEHLVTVG---GYIYLWNWR-------SAML----------- 120 (882)
Q Consensus 68 ~~I~vwd~~t-~~~~-----~~l~~h~~~V~~lafspdg~~Las~~---~~i~iWd~~-------~g~~----------- 120 (882)
..|.+.+... ++.. ..+... .....++++|++.+|..++ +.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 2377776444 2221 222221 2345789999766666666 889999998 5554
Q ss_pred eeee-ecCCcccceeEEEEccCCCEEEEECC--CcEEEEEccc
Q 047837 121 VMKL-KANSSCSAITSACFSSDAKFIVTAGK--KHLKFWTIGS 160 (882)
Q Consensus 121 ~~~~-~~~~~~~~v~~l~fs~d~~~l~~~~~--~~i~iwd~~~ 160 (882)
...+ ... .......++|+|+++.|..+.. ..|+.++...
T Consensus 300 ~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 300 FKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 1122 222 1245689999999996665543 5688766543
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0036 Score=66.36 Aligned_cols=142 Identities=7% Similarity=0.018 Sum_probs=95.8
Q ss_pred CCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc----eeeEEeeccc
Q 047837 13 SSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL----AFISELKGHL 88 (882)
Q Consensus 13 ~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~----~~~~~l~~h~ 88 (882)
...+++...+.|...|++.......+. .. ..+.+|+|++.+..|..... ..+.|+.+++... .....+....
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~--~~~~~l~~d~~~~~lywsD~-~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NL--RNVVALDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SC--SCEEEEEEETTTTEEEEEET-TTTEEEEEEC------CCCEEEECSSC
T ss_pred cceeEEeccceeEEEccCCcceeEecc-cc--CcceEEeeeeccCceEEEec-CCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 346777778899999998776655543 23 67999999998777777753 3578999998752 2233333345
Q ss_pred cceeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEccc
Q 047837 89 YGVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIGS 160 (882)
Q Consensus 89 ~~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~~ 160 (882)
.....|++.+.+..|..++ +.|.+.++........+.... .....|++.|.+.+|..+.. +.|...+++.
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~--~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS--CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC--CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 5678999999777776666 899999987654433333222 56889999997666655432 4566666654
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=0.00042 Score=79.33 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=76.2
Q ss_pred EEEEcC-CCCEEEEeecCCC---------CeEEEEECCCceee--EEeec-cccceeEEEECCCCCEEEEEc---CEEEE
Q 047837 49 CVAMSR-DGRYVAAGESGPQ---------PAVLVWDCANLAFI--SELKG-HLYGVECIAFSPDGEHLVTVG---GYIYL 112 (882)
Q Consensus 49 ~va~sp-dg~~la~g~~~~d---------~~I~vwd~~t~~~~--~~l~~-h~~~V~~lafspdg~~Las~~---~~i~i 112 (882)
++++.+ +|++++.|..+.+ ..+.+||..+++.. ..+.. +.....++++..+|+.++.|+ ..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 8999998864322 16899999887632 33322 333345688899999999998 68999
Q ss_pred EEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC-------CcEEEEEcccCc
Q 047837 113 WNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK-------KHLKFWTIGSSA 162 (882)
Q Consensus 113 Wd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~-------~~i~iwd~~~~~ 162 (882)
||..+++-...-..+. ...-.++++.+++++++.+|. ..+.+||..+..
T Consensus 270 yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9998876443322221 122245666789999999882 358888876554
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.13 E-value=0.00035 Score=67.86 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=95.0
Q ss_pred CccccCCCCCeEEEee-ceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee---
Q 047837 5 HNIKKPDSSSKCAYVA-GCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF--- 80 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~-~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~--- 80 (882)
++++.|++...++... .+.|...|.. ++.++.+.-... .....|++.++++++++.. .++.+.++++.....
T Consensus 31 Gla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E--~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 31 SLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDE--RDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp EEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEET--TTTEEEEEEECTTCCEEE
T ss_pred eeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEEC--CCCcEEEEEcCCCCeeee
Confidence 5788998653333332 4589999998 777777643221 4688899999998766653 367899998765432
Q ss_pred eEEee------ccccceeEEEECCCCCEEEEEc--C--EEEEEEc-Ccceeeeeee-----cCCcccceeEEEEccCCCE
Q 047837 81 ISELK------GHLYGVECIAFSPDGEHLVTVG--G--YIYLWNW-RSAMLVMKLK-----ANSSCSAITSACFSSDAKF 144 (882)
Q Consensus 81 ~~~l~------~h~~~V~~lafspdg~~Las~~--~--~i~iWd~-~~g~~~~~~~-----~~~~~~~v~~l~fs~d~~~ 144 (882)
+.... .+......|+|+|+++.|.++. . .|+.|+- .....+..+. .......+.+++|+|....
T Consensus 107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~ 186 (255)
T 3qqz_A 107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNT 186 (255)
T ss_dssp EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTE
T ss_pred eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCe
Confidence 22221 2345679999999997777766 3 4555541 0111122121 1112256799999996555
Q ss_pred EEEECC--CcEEEEEcccC
Q 047837 145 IVTAGK--KHLKFWTIGSS 161 (882)
Q Consensus 145 l~~~~~--~~i~iwd~~~~ 161 (882)
|.+.++ +.+..+|....
T Consensus 187 lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 187 LLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp EEEEETTTTEEEEECTTCC
T ss_pred EEEEECCCCeEEEEcCCCC
Confidence 444443 56888887644
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.13 E-value=0.0026 Score=64.90 Aligned_cols=141 Identities=9% Similarity=0.031 Sum_probs=91.9
Q ss_pred CeEEEeeceEEEEEECCCCc--eEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee-EEeeccccc
Q 047837 14 SKCAYVAGCVLVVYDVDSST--QSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI-SELKGHLYG 90 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~--~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~-~~l~~h~~~ 90 (882)
..++|...+.|...|++... ....+.+- ....+++|.+.+..|..... ..+.|..++...+... ..+...-..
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~---~~~~~ld~d~~~~~lyw~D~-~~~~I~r~~~~g~~~~~~~~~~~l~~ 80 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVGGL---EDAAAVDFVFSHGLIYWSDV-SEEAIKRTEFNKTESVQNVVVSGLLS 80 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEEEE---EEEEEEEEEGGGTEEEEEET-TTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEecCC---CccEEEEEEeCCCEEEEEEC-CCCcEEEEEccCCCceEEEEcCCCCC
Confidence 36788888899999998764 22223222 45789999997777776653 3678999998876422 222323345
Q ss_pred eeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEccc
Q 047837 91 VECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIGS 160 (882)
Q Consensus 91 V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~~ 160 (882)
...|++.+.+..|..++ +.|.+++.........+... ......+++.|.+..|..+.. +.|...+++.
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~--~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE--LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 77899998776666665 89999998654322222222 266789999997665555432 4566666543
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.0063 Score=62.19 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=94.5
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC--CeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD--RSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
+.++-...+.|.++++... .....+.........++++|.+..|+.+... +.|...++... ....+... .-
T Consensus 91 ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~-----~~ 163 (316)
T 1ijq_A 91 IYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE-----NI 163 (316)
T ss_dssp EEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECS-----SC
T ss_pred EEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEEC-----CC
Confidence 4455566788999988654 2222233334567899999966666555432 67888887632 22222111 12
Q ss_pred CceEEEEEecCCCEEEEEe-CCCcEEEEEccCCceEEEEEe-ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 569 GTVYDMDIDPTMEVVITVG-QDKKINSFSIAAGKLIRSFKQ-AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
.....+++++++..|..+. ..+.|..+|+.. ...+.+.. ......+..+++. .+.++++-...+.|..+|..+|+.
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 4678999999877666555 556899999874 43344431 1233457788885 355556666678888888877765
Q ss_pred EEEEc
Q 047837 647 VAKAM 651 (882)
Q Consensus 647 ~~~~~ 651 (882)
+..+.
T Consensus 242 ~~~i~ 246 (316)
T 1ijq_A 242 VNLLA 246 (316)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 55543
No 285
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.11 E-value=0.033 Score=64.99 Aligned_cols=491 Identities=10% Similarity=0.029 Sum_probs=245.1
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEe--cCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEE-eecc----
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVS--HRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISE-LKGH---- 87 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~--h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~-l~~h---- 87 (882)
.+-....+-|..||.++++....... ......|.++....+|++.+. +. + -|..+|..+++.... +...
T Consensus 114 ~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~--~-Gl~~~~~~~~~~~~~~~~~~~~~~ 189 (758)
T 3ott_A 114 TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TY--N-GLCRYIPSNGKFEGIPLPVHSSQS 189 (758)
T ss_dssp EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEE-ET--T-EEEEEETTTTEEEEECCCCCTTCS
T ss_pred cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eC--C-CHhhCccCCCceEEecCCCccccc
Confidence 34444444688889877665433110 011146899999888876553 32 2 488899887764322 1111
Q ss_pred ccceeEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcccCcccee
Q 047837 88 LYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIGSSATART 166 (882)
Q Consensus 88 ~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~~~~~~~~ 166 (882)
...|.++...+++..|-.+. +-+..+|..+++......... ..|.++...++|.+.+.. ++.+.+++..++.. .
T Consensus 190 ~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~--~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~--~ 264 (758)
T 3ott_A 190 NLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHN--NSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL--Q 264 (758)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEE--EEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC--E
T ss_pred cceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCC--CeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE--E
Confidence 23488888888776544444 668889988775433211122 568889888888888766 44577777655433 1
Q ss_pred ccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccCceEEEEccCceeeeEeeceeeee
Q 047837 167 RLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDAGILYIVHSGLSVTKSVDLKVKNG 246 (882)
Q Consensus 167 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 246 (882)
...... ..+..+ ....+.+
T Consensus 265 ~~~~~~------~~~~~l-------------------------------------------------------~~~~i~~ 283 (758)
T 3ott_A 265 HIIHDS------RNIQSL-------------------------------------------------------TNNIIWN 283 (758)
T ss_dssp EECCCT------TCTTSC-------------------------------------------------------SCSCEEE
T ss_pred EEEcCC------CCcCcC-------------------------------------------------------CcCeEEE
Confidence 100000 000000 0011244
Q ss_pred EEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccccccCCCCCCcEEEeecCCCeEEE
Q 047837 247 FALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELYFKLTPTIPNAIACQFSTSEKLVV 326 (882)
Q Consensus 247 ~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~ 326 (882)
+....+|. |-.|+..| +.++.... . ...+.... .. .......+.++....+|.+-+
T Consensus 284 i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~---~~-----------------~~~~~~~v~~i~~D~~g~lWi 339 (758)
T 3ott_A 284 IFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQ---IT-----------------GTGDGNQFYSLFRDSKGFYWF 339 (758)
T ss_dssp EEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHH---HS-----------------CSCCCCBEEEEEECTTCCEEE
T ss_pred EEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEeccc---CC-----------------CCCCCceEEEEEEcCCCCEEE
Confidence 55555554 44455555 43332211 0 00000000 00 001123456777778889888
Q ss_pred EeCCceEEEEEcccccccceeeeeecCcceeeeecccCCCCCCCCCcceeeeccCCCcEEEEeeCCCcEEEEecCCCcee
Q 047837 327 VYGDHSLYVWDIHDVNEATRCCVLVSHSACIWDIKNLGCENMHDPSVSCVARGCTGGVSFSTCSADGTIRLWDLALQSEL 406 (882)
Q Consensus 327 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~h~~~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~ 406 (882)
++.+| +..++..++.... ...+. +... ........|.++.-. .++.+.+ |+ ++-|..++..+++..
T Consensus 340 Gt~~G-l~~~~~~~~~~~~-~~~~~-~~~~--------~~~l~~~~v~~i~~d-~~g~lWi-gt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 340 GGANG-LIRFTDPAGERHD-AIWYR-MGDK--------TYPLSHNRIRHIYED-KEQQLWI-AT-DGSINRYDYATRQFI 405 (758)
T ss_dssp EETTE-EEEESCTTSSCCC-CEEEC-TTCS--------SSCCSCSCEEEEEEC-TTSCEEE-EE-TTEEEEEETTTTEEE
T ss_pred eeCCc-ceeecccccccce-eEEec-cCCc--------CCCCCCCceEEEEEC-CCCCEEE-Ee-CCcHhhcCcCCCcEE
Confidence 88654 6666654321111 00111 0000 000123456666655 4555444 44 456888988765432
Q ss_pred eecccCCccceeeecCCcceEeeeeeeeeeeeeeccccCeEEEEEcCCCCEEEeeeccceEEEEEEecCCCCCccceecc
Q 047837 407 SKDVLGHESLNIEPMSTAHLVSAGIFERNTMETSVSTQGYRSMAVSSRGSTLLLDAHDAEILSLSFSLSSKKDDVLEEVT 486 (882)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 486 (882)
.-.. ....+. .....|.++....++
T Consensus 406 ~~~~----------------------------------------~~~~~~-----~~~~~v~~i~~d~~g---------- 430 (758)
T 3ott_A 406 HYNI----------------------------------------VDNTGT-----YNTNWTYYIFEDTAG---------- 430 (758)
T ss_dssp EEEE----------------------------------------ECCC-------CBSSSEEEEEECTTS----------
T ss_pred Eeec----------------------------------------CCCcCC-----CCCceEEEEEEcCCC----------
Confidence 1000 000000 012335555544444
Q ss_pred CCceEEEEEcCCCcEEEEEcCCC-----ceeE--EEee---c-CCCCEEEEEEccCCCEEEE-EeCCCeEEEEeCccCcc
Q 047837 487 DSHYFLASGGRDRTIHLYDVKRN-----FDLI--ESID---D-HSAAVTAVKFTCNGRKILS-CSADRSLVVRDVVETNS 554 (882)
Q Consensus 487 ~~~~~l~~g~~dg~v~iwd~~~~-----~~~~--~~~~---~-h~~~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~ 554 (882)
.|-.|+..+-+.++|..+. .... ..+. + ....|.++...++|+..+. ++..| |..+|..+..
T Consensus 431 ----~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~G-l~~~d~~~~~- 504 (758)
T 3ott_A 431 ----QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKG-IDKINPRTRE- 504 (758)
T ss_dssp ----EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSS-EEEEETTTTE-
T ss_pred ----CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCC-cEEEeCCCCc-
Confidence 3555665556888885421 0111 1111 1 1235899999999988763 44444 8888886443
Q ss_pred ceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceEEEEEe-ccCCCCcEEEEECCCCCEEEEEeCC
Q 047837 555 AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLIRSFKQ-AKDFGDPMKVTVDPSGSYLVCSYSN 633 (882)
Q Consensus 555 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~d 633 (882)
...... ........+.++....+|.+.+.. .+ -+..||..+++... +.. .-....|.++... +|++.+ ++.+
T Consensus 505 ~~~~~~--~~~~~~~~~~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi-~t~~ 577 (758)
T 3ott_A 505 VTKLFA--DELTGEKSPNYLLCDEDGLLWVGF-HG-GVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWV-STTN 577 (758)
T ss_dssp EEEECT--TTSCGGGCEEEEEECTTSCEEEEE-TT-EEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEE-EESS
T ss_pred eEEecC--CCcCCCcccceEEECCCCCEEEEe-cC-ceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEE-ECCC
Confidence 222211 111112467888888888877653 44 48888877654322 110 0123457777764 665444 4455
Q ss_pred CcEEEEEccCCeEEEEEccCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCC
Q 047837 634 KSICLYDFISGEMVAKAMGHGEVITGVTFL-PDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 634 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
| |..+|..+.+... +.-....+....+. ++|. |.-|+.+|.+ .++...
T Consensus 578 G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~-l~fG~~~Gl~-~f~p~~ 626 (758)
T 3ott_A 578 G-LWIIDRKTMDARQ-QNMTNKRFTSLLFDPKEDC-VYLGGADGFG-ISHSNL 626 (758)
T ss_dssp C-EEEEETTTCCEEE-C--CCCCCSEEEEETTTTE-EEEECBSEEE-EEEC--
T ss_pred C-eEEEcCCCceeEE-ecCCCCceeeeEEECCCCc-EEEecCCceE-EEChhh
Confidence 5 7888988776432 21122233444443 4664 5557777755 455543
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.10 E-value=0.0079 Score=63.69 Aligned_cols=162 Identities=10% Similarity=0.046 Sum_probs=99.7
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC--CCeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA--DRSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
+.++-...+.|.+.++... .....+.........|+++|.+.+|+.... .+.|...++.... ...+.... -
T Consensus 173 lY~~d~~~~~I~~~~~~g~-~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~-----l 245 (400)
T 3p5b_L 173 IYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN-----I 245 (400)
T ss_dssp EEEEETTTTEEEEECTTTC-SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSS-----C
T ss_pred eEEEECCCCeEEEEeCCCC-ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECC-----C
Confidence 5555566778888888754 223333334456889999997666665542 3678888876332 22221111 1
Q ss_pred CceEEEEEecCCCEEEEEe-CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047837 569 GTVYDMDIDPTMEVVITVG-QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMV 647 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~ 647 (882)
.....|++++++..|..+. ..+.|..+|+........+...........+++. .+.++++-...+.|..+|..+|+.+
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 4678999999887776665 4578999998744333333311234566778773 3445556666788999998888776
Q ss_pred EEEccCCCCeEEE
Q 047837 648 AKAMGHGEVITGV 660 (882)
Q Consensus 648 ~~~~~h~~~v~~l 660 (882)
..+.........|
T Consensus 325 ~~i~~~~~~p~~i 337 (400)
T 3p5b_L 325 NLLAENLLSPEDM 337 (400)
T ss_dssp EEEECSCSCEEEE
T ss_pred EEEecCCCCCceE
Confidence 6665433334444
No 287
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.10 E-value=0.0055 Score=64.65 Aligned_cols=205 Identities=10% Similarity=0.004 Sum_probs=126.3
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEE-EEEeCCCeE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKI-LSCSADRSL 544 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i 544 (882)
....++|++... .++.+-...+.|+.+++... .....+.........+++.+.+..| ++-...+.|
T Consensus 117 ~~~gl~~d~~~~------------~ly~~D~~~~~I~r~~~~g~-~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I 183 (386)
T 3v65_B 117 NAIALDFHHRRE------------LVFWSDVTLDRILRANLNGS-NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRI 183 (386)
T ss_dssp CEEEEEEETTTT------------EEEEEETTTTEEEEEETTSC-CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEecCCC------------eEEEEeCCCCcEEEEecCCC-CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeE
Confidence 456677776544 14555566788989988764 2223333333455778998755544 455567788
Q ss_pred EEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe-CC-CcEEEEEccCCceEEEEEeccCCCCcEEEEECC
Q 047837 545 VVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG-QD-KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDP 622 (882)
Q Consensus 545 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~sp 622 (882)
.+.++..... ..+... .......++++|.+..|+... .. +.|..+++.. .....+. .........++|+|
T Consensus 184 ~~~~~dg~~~-~~l~~~-----~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~-~~~~~~PnGlavd~ 255 (386)
T 3v65_B 184 EVANLDGAHR-KVLLWQ-----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIA-DTHLFWPNGLTIDY 255 (386)
T ss_dssp EECBTTSCSC-EEEECS-----SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEE-CSSCSCEEEEEEEG
T ss_pred EEEeCCCCce-EEeecC-----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCcEEEE-ECCCCCeeeEEEeC
Confidence 8888763322 222111 114678999999777665554 34 6788888764 3333332 13345688999998
Q ss_pred CCCEEEEE-eCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 623 SGSYLVCS-YSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 623 dg~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
++..|..+ ...+.|..+|+........+.........|++ ..+..+++-...+.|..++..++.....+
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 256 AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp GGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 76665544 45678999998654433334334456778888 34555566667788988886555555444
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.0014 Score=70.18 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=95.8
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEE-eCCCcEEEEEccC
Q 047837 522 AVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITV-GQDKKINSFSIAA 599 (882)
Q Consensus 522 ~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~ 599 (882)
....++++| ++.++++-..++.|..++....... .+.. .........++|+|++++|+.+ ...+.|..++...
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFT----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEE----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 456788999 7777777767888999998744321 1111 1111356789999999955554 4567899988753
Q ss_pred --Cce--EEEEEec-c------------CCCCcE-EEEEC--------CCCCEEEEEeCCCcEEEEEccCCeEEEEEcc-
Q 047837 600 --GKL--IRSFKQA-K------------DFGDPM-KVTVD--------PSGSYLVCSYSNKSICLYDFISGEMVAKAMG- 652 (882)
Q Consensus 600 --~~~--~~~~~~~-~------------~~~~v~-~~~~s--------pdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 652 (882)
++. +..+... + ...... .++.. ++|.+.++-...+.|+.++ .+|+.......
T Consensus 302 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g 380 (430)
T 3tc9_A 302 KTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRG 380 (430)
T ss_dssp TTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECC
T ss_pred ccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCC
Confidence 222 2222211 0 112234 45553 4566777766778899998 46754433311
Q ss_pred ---C-------------CCCeEEEEECCC-CCEEEEEeCCCeEEEEeCC
Q 047837 653 ---H-------------GEVITGVTFLPD-CKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 653 ---h-------------~~~v~~l~~s~d-~~~l~s~~~dg~i~vwd~~ 684 (882)
. -.....|+++++ +.++++-.....|+..+++
T Consensus 381 ~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 381 SNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 0 125789999995 5555555566788887754
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.06 E-value=0.0032 Score=64.23 Aligned_cols=207 Identities=11% Similarity=-0.002 Sum_probs=129.2
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCC-EEEEEeCCCe
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGR-KILSCSADRS 543 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~ 543 (882)
.....++|++... .++.+-...+.|..+++.........+...-.....+++.+.+. ++++-...+.
T Consensus 35 ~~~~~ld~d~~~~------------~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~ 102 (318)
T 3sov_A 35 EDAAAVDFVFSHG------------LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR 102 (318)
T ss_dssp EEEEEEEEEGGGT------------EEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred CccEEEEEEeCCC------------EEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCE
Confidence 4566888887544 25556566788999998765222222222334567899987444 4455556788
Q ss_pred EEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC--CCcEEEEEccCCceEEEEEeccCCCCcEEEEEC
Q 047837 544 LVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ--DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD 621 (882)
Q Consensus 544 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 621 (882)
|.++++.... ...+... .......+++.|.+..|+.+.. .+.|...++. |.....+. ...-.....++++
T Consensus 103 I~~~~~dG~~-~~~l~~~-----~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-~~~l~~Pnglavd 174 (318)
T 3sov_A 103 IEVSNLDGSL-RKVLFWQ-----ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII-NSEIYWPNGLTLD 174 (318)
T ss_dssp EEEEETTSCS-CEEEECS-----SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE-CSSCSCEEEEEEE
T ss_pred EEEEECCCCc-EEEEEeC-----CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE-ECCCCCccEEEEe
Confidence 9999987432 2222111 1246789999997666665552 5788888876 44333332 1334567899999
Q ss_pred CCCCEEEEE-eCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCccc
Q 047837 622 PSGSYLVCS-YSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPRNF 692 (882)
Q Consensus 622 pdg~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~~~ 692 (882)
|++..|..+ ...+.|..+|+..........+.......|++.. +..+.+-...+.|..++..++.....+
T Consensus 175 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 175 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 976666554 4567899999864433223333445667888753 345555557788999998766654443
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.05 E-value=0.0094 Score=61.21 Aligned_cols=157 Identities=8% Similarity=0.041 Sum_probs=94.3
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 517 DDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 517 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
..+...+..+++.+++.+++.+...+..+-+|-. ....+... ......+..+++.++++.++. +.+|.+++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~----~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~ 231 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHN----RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSD 231 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEE----CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECC----CCCCCccceeEECCCCCEEEE-eCCceEEEec
Confidence 3455678999999998888776554433333321 11111111 112357888999999876654 5678777764
Q ss_pred ccCCceEEEEEec--cCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc---cCCCCeEEEEECCCCCEEEE
Q 047837 597 IAAGKLIRSFKQA--KDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAM---GHGEVITGVTFLPDCKHIVS 671 (882)
Q Consensus 597 ~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~d~~~l~s 671 (882)
...|+.-..+... .....+..+++.+++.+++++. +|.| .+..+.|+--..+. .+...+.++.|.+++ .++.
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~ 308 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFI 308 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEE
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEE
Confidence 3324333222211 1223578999999888877765 6666 34555555444443 234577889997555 4667
Q ss_pred EeCCCeEEEEeC
Q 047837 672 VGGDGLQRVKEK 683 (882)
Q Consensus 672 ~~~dg~i~vwd~ 683 (882)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 788998776653
No 291
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.02 E-value=0.0092 Score=58.71 Aligned_cols=243 Identities=13% Similarity=0.187 Sum_probs=147.6
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC-ceeeEE
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN-LAFISE 83 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t-~~~~~~ 83 (882)
+...||... .++.-+|.++.|+|+++.+.+....-. ..|..-.|-.+..+-.+. +..|+-|+++. ..+++.
T Consensus 71 sAIMnP~~~-ViALrag~~LQiFnletK~klks~~~~---e~VvfWkWis~~~L~lVT----~taVyHWs~~~~s~P~kv 142 (365)
T 2xzh_A 71 SAIMNPASK-VIALKAGKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNTVALVT----DNAVYHWSMEGESQPVKM 142 (365)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEEECS---SCEEEEEECSSSEEEEEE----SSEEEEEESSTTCCCEEE
T ss_pred eeeeCCCcc-EEEEecCCeEEEechHHhhhhcceecC---CccEEEEecCCCeEEEEc----CCcEEEEcccCCCCCcee
Confidence 456788854 788888999999999998877665443 578777777666554444 44799999974 456666
Q ss_pred eeccc----cceeEEEECCCCCEEEEEc---------CEEEEEEcCcceeeeeeecCCcccceeEEEEcc---CCCEEEE
Q 047837 84 LKGHL----YGVECIAFSPDGEHLVTVG---------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSS---DAKFIVT 147 (882)
Q Consensus 84 l~~h~----~~V~~lafspdg~~Las~~---------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~---d~~~l~~ 147 (882)
+.-|. ..|..-..++|.++++-.| |.+.+|..+.+. -+.+++|. +....+.+.. ..++++.
T Consensus 143 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha--a~F~~~~~~g~~~~~~lf~f 219 (365)
T 2xzh_A 143 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA--ASFAQFKMEGNAEESTLFCF 219 (365)
T ss_dssp EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSE--EEEEEECCTTCSSCEEEEEE
T ss_pred eecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeee--eeeEEEecCCCCCCceEEEE
Confidence 66553 4688888899999988766 889999976543 34455553 2222222211 1224444
Q ss_pred ECC----CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccC
Q 047837 148 AGK----KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDA 223 (882)
Q Consensus 148 ~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (882)
+.. +.+++-++..... +.. ....+.+.+.+.++ .
T Consensus 220 a~r~~~g~kLhIiEi~~~~~-------~~~--~f~kk~vdi~fppe---------------------a------------ 257 (365)
T 2xzh_A 220 AVRGQAGGKLHIIEVGTPPT-------GNQ--PFPKKAVDVFFPPE---------------------A------------ 257 (365)
T ss_dssp EEEETTEEEEEEEECSSCCT-------TCC--CCCCEEEEECCCTT---------------------C------------
T ss_pred EEecCCCcEEEEEEcCCCCC-------CCC--CcccccceeeCCcc---------------------c------------
Confidence 433 3677777643210 000 00111111111000 0
Q ss_pred ceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhccc
Q 047837 224 GILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATELY 303 (882)
Q Consensus 224 g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (882)
.....-++.+++.-..++..+.-|.|.+||++++.++..-..+....
T Consensus 258 ----------------~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~i----------------- 304 (365)
T 2xzh_A 258 ----------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI----------------- 304 (365)
T ss_dssp ----------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-----------------
T ss_pred ----------------cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCce-----------------
Confidence 01122567888888889999999999999999998876544221111
Q ss_pred cccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEccccc
Q 047837 304 FKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVN 342 (882)
Q Consensus 304 ~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~ 342 (882)
..++.....+-++.....|.|.--.++...
T Consensus 305 ---------F~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 305 ---------FVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp ---------EEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred ---------EEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 112233344567777777777776665543
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.02 E-value=0.0013 Score=66.15 Aligned_cols=187 Identities=16% Similarity=0.322 Sum_probs=122.3
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccC----CCE--E-E-EEeC--CCeEEEEeCccCc-cceeee
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCN----GRK--I-L-SCSA--DRSLVVRDVVETN-SAYKIS 559 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~--l-~-s~~~--dg~i~vwd~~~~~-~~~~~~ 559 (882)
+++.....+-+.+||+ ++ +.+..+.. ..+..+..-|+ |+. + + +.-. +++|.+|++.... ....+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G-~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DG-KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TS-CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred EEEEEcCCCCEEEEcC-CC-cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 5555556678999999 55 56666653 56777777663 222 2 3 3333 5789999774222 222221
Q ss_pred ccceecccC-CceEEEEE--ecC-CC-EEEEEeCCCcEEEEEcc-------CCceEEEEEeccCCCCcEEEEECCCCCEE
Q 047837 560 RRHQQLASQ-GTVYDMDI--DPT-ME-VVITVGQDKKINSFSIA-------AGKLIRSFKQAKDFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 560 ~~~~~~~~~-~~v~~~~~--sp~-~~-~l~~~~~d~~v~iwd~~-------~~~~~~~~~~~~~~~~v~~~~~spdg~~l 627 (882)
......... ..++.+++ +|. ++ ++++...+|.+..|++. +.+.+++|. -...+-.|+..+...+|
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~---lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK---MNSQTEGMAADDEYGRL 194 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---CSSCEEEEEEETTTTEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---CCCCcceEEEcCCCCeE
Confidence 100000111 46777777 774 44 68888889999999983 446777876 34678899999999999
Q ss_pred EEEeCCCcEEEEEcc-----CCeEEEEEc-cC-CCCeEEEEE--CCCCC-EEEEEe-CCCeEEEEeCC
Q 047837 628 VCSYSNKSICLYDFI-----SGEMVAKAM-GH-GEVITGVTF--LPDCK-HIVSVG-GDGLQRVKEKY 684 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~l~~--s~d~~-~l~s~~-~dg~i~vwd~~ 684 (882)
..+-++.-|..++.+ +++.+..+. ++ ...+..|++ .++++ +|++++ .++...+||..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999998777777754 356666553 22 247888888 56666 666666 67899999996
No 293
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.98 E-value=0.00037 Score=80.99 Aligned_cols=197 Identities=8% Similarity=0.061 Sum_probs=109.7
Q ss_pred eEEEEEEe-cCCCCCccceeccCCceEEEEE-cCC----CcEEEEEcCCC-ceeEEEeecCCCCEEEEEEccCCCEEEEE
Q 047837 466 EILSLSFS-LSSKKDDVLEEVTDSHYFLASG-GRD----RTIHLYDVKRN-FDLIESIDDHSAAVTAVKFTCNGRKILSC 538 (882)
Q Consensus 466 ~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~g-~~d----g~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 538 (882)
.+...+|+ |+++ +||.+ ..+ ..|+++|+.++ ......+.. ....++|+|||+.|+..
T Consensus 175 ~~~~~~~S~PDG~-------------~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~ 238 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-------------LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYV 238 (751)
T ss_dssp EEEEEEECTTTTC-------------EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEE
T ss_pred EEeeeEecCCCCC-------------EEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEE
Confidence 45566777 7766 55533 222 35999999876 422111111 13468899999988877
Q ss_pred eCC-----CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeC---CCcEEEEEccCCc-eE--EEEE
Q 047837 539 SAD-----RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ---DKKINSFSIAAGK-LI--RSFK 607 (882)
Q Consensus 539 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~-~~--~~~~ 607 (882)
..| ..|+++++.++.....+.... ........+.|+|||++|+.... ...|.++|+.++. .. ..+.
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~~~lv~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 315 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSEDVCLYEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR 315 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGGCEEEEEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS
T ss_pred EECCCCCCCEEEEEECCCCchhcEEEEec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee
Confidence 665 257888887554221111100 11134567899999998887663 3468889998763 22 3332
Q ss_pred eccCCCCcEEEEECCCCCEEEEEeCC----CcEEEEEccCCeEEEE-EccCCC--CeEEEEECCCCCEEEEEeCCCeE--
Q 047837 608 QAKDFGDPMKVTVDPSGSYLVCSYSN----KSICLYDFISGEMVAK-AMGHGE--VITGVTFLPDCKHIVSVGGDGLQ-- 678 (882)
Q Consensus 608 ~~~~~~~v~~~~~spdg~~l~~~~~d----g~i~iwd~~~~~~~~~-~~~h~~--~v~~l~~s~d~~~l~s~~~dg~i-- 678 (882)
.........+.|+.++.+++....+ ..|..+|+.++..... +..|.. .+..+.+. .+.++++...++..
T Consensus 316 -~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 316 -PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp -CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEE
T ss_pred -cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEE
Confidence 1334455666655444444454443 3677777765311122 223433 34556664 33455566677754
Q ss_pred EEEeC
Q 047837 679 RVKEK 683 (882)
Q Consensus 679 ~vwd~ 683 (882)
.++++
T Consensus 394 ~~~dl 398 (751)
T 2xe4_A 394 WTMMA 398 (751)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45554
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.91 E-value=0.0063 Score=61.33 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=99.9
Q ss_pred EEEEcC--CCcEEEEEcCCCceeEEEeec------CC-CCEEEEEE--ccC-CC-EEEEEeCCCeEEEEeCccCc---cc
Q 047837 492 LASGGR--DRTIHLYDVKRNFDLIESIDD------HS-AAVTAVKF--TCN-GR-KILSCSADRSLVVRDVVETN---SA 555 (882)
Q Consensus 492 l~~g~~--dg~v~iwd~~~~~~~~~~~~~------h~-~~v~~~~~--s~~-~~-~l~s~~~dg~i~vwd~~~~~---~~ 555 (882)
+++.-. +++|.+|++......+..+.. .. ..+..+++ +|. ++ ++++...+|.+..|++.... ..
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 344444 678999977422223444421 11 55667787 664 44 67788889999999985322 12
Q ss_pred eeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc-----CCceEEEEEeccCCCCcEEEEE--CCCCC-EE
Q 047837 556 YKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA-----AGKLIRSFKQAKDFGDPMKVTV--DPSGS-YL 627 (882)
Q Consensus 556 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--spdg~-~l 627 (882)
.++.+ .+.....+..++..+....|+.+-++.-|..+|.+ +++.+..+....-...+..|++ .++++ ||
T Consensus 170 ~~lVR---~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 170 GKKVR---AFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp EEEEE---EEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred ceEEE---EecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 22221 12233578899999999999999999777777755 3445544421122246788887 56666 66
Q ss_pred EEEe-CCCcEEEEEcc-CCeEEEEEc
Q 047837 628 VCSY-SNKSICLYDFI-SGEMVAKAM 651 (882)
Q Consensus 628 ~~~~-~dg~i~iwd~~-~~~~~~~~~ 651 (882)
++++ .+.+..+||.+ +.+.+..+.
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 6655 57799999996 667666664
No 295
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.0024 Score=68.39 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=111.3
Q ss_pred EEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCC---C-eEEEEeCccCccceeeeccceeccc
Q 047837 492 LASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSAD---R-SLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 492 l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g-~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
|..+...+.|+.+|..++ .. ..+.........++++++|+++++.... . .+...+........... ..
T Consensus 155 Lyv~D~~~~I~~id~~~g-~v-~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~------~~ 226 (433)
T 4hw6_A 155 LYWVGQRDAFRHVDFVNQ-YV-DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL------CN 226 (433)
T ss_dssp EEEECBTSCEEEEETTTT-EE-EEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE------EE
T ss_pred EEEEeCCCCEEEEECCCC-EE-EEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc------cc
Confidence 444444378999998665 33 3344455668999999999944444321 1 13333332111110111 11
Q ss_pred CCceEEEEEec-CCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEEcc--C
Q 047837 568 QGTVYDMDIDP-TMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLV-CSYSNKSICLYDFI--S 643 (882)
Q Consensus 568 ~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~~dg~i~iwd~~--~ 643 (882)
......++++| ++.+.++-..++.|+.+|..++.....+...+.......++|+|+|++|. +-...+.|+.++.. +
T Consensus 227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~ 306 (433)
T 4hw6_A 227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET 306 (433)
T ss_dssp CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT
T ss_pred cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC
Confidence 23566789999 67766666677899999998787644433223333455799999999554 44556789998865 3
Q ss_pred CeE--EEEEccC---------------CCCeEEEEE---------CCCCCEEEEEeCCCeEEEEeCC
Q 047837 644 GEM--VAKAMGH---------------GEVITGVTF---------LPDCKHIVSVGGDGLQRVKEKY 684 (882)
Q Consensus 644 ~~~--~~~~~~h---------------~~~v~~l~~---------s~d~~~l~s~~~dg~i~vwd~~ 684 (882)
++. ...+.+. -.....+++ .++|.++++-...+.|+.++..
T Consensus 307 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 307 GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 321 1122111 123567999 7777777766677788888753
No 296
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.87 E-value=0.00051 Score=79.84 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=97.9
Q ss_pred CEEEEEEc-cCCCEEEEEeC-C----CeEEEEeCccC-ccceeeeccceecccCCceEEEEEecCCCEEEEEeCC-----
Q 047837 522 AVTAVKFT-CNGRKILSCSA-D----RSLVVRDVVET-NSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQD----- 589 (882)
Q Consensus 522 ~v~~~~~s-~~~~~l~s~~~-d----g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----- 589 (882)
.+...+|| |||++||.+.. + ..|+++|+.++ +.... ... .....++|+|||+.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~-----~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVS-----GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEE-----EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---ccc-----CceeeEEEecCCCEEEEEEECCCCCC
Confidence 57789999 99999885433 2 25999999876 42111 000 123568999999988877765
Q ss_pred CcEEEEEccCCce--EEEEEeccCCCCcEEEEECCCCCEEEEEeC---CCcEEEEEccCC--eE-EEEE-ccCCCCeEEE
Q 047837 590 KKINSFSIAAGKL--IRSFKQAKDFGDPMKVTVDPSGSYLVCSYS---NKSICLYDFISG--EM-VAKA-MGHGEVITGV 660 (882)
Q Consensus 590 ~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---dg~i~iwd~~~~--~~-~~~~-~~h~~~v~~l 660 (882)
..|.++++.++.. ...+.. .+......+.|||||++|+.... ...|+++|+.++ +. +..+ ........++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred CEEEEEECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 2688888877642 233331 22334567899999999886653 347889999875 33 1333 3344555666
Q ss_pred EECCCCCEEEEEeCC----CeEEEEeCCC
Q 047837 661 TFLPDCKHIVSVGGD----GLQRVKEKYG 685 (882)
Q Consensus 661 ~~s~d~~~l~s~~~d----g~i~vwd~~~ 685 (882)
.|+.++.+++....+ ..|..+|+.+
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 665444445554444 2566777664
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.87 E-value=0.01 Score=68.31 Aligned_cols=141 Identities=7% Similarity=0.021 Sum_probs=94.3
Q ss_pred CeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCc----eeeEEeecccc
Q 047837 14 SKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANL----AFISELKGHLY 89 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~----~~~~~l~~h~~ 89 (882)
..+++.....|+..++.......++.+ . ..+.+|+|.+....|+.... ..+.|+.+++... .....+.....
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~-~--~~~~gl~~d~~~~~lY~sD~-~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPN-L--RNVVALDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECS-C--SSEEEEEEETTTTEEEEEET-TTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccccccceeEeeccCCcceeeecC-C--CceEEEeecccCCeeEEeec-cceeEEEEeccCCCCCcceeEEEecCCC
Confidence 356666777899999887666555433 2 67899999997777776654 3578999998753 22333443456
Q ss_pred ceeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEccc
Q 047837 90 GVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIGS 160 (882)
Q Consensus 90 ~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~~ 160 (882)
....||+.+.++.|..++ +.|.+.++........+.... .....|++.|.+.+|..+.. ..|...+++.
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l--~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC--CCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 678999999888887777 899999987544333333222 56889999997666655542 4566666653
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.82 E-value=0.023 Score=58.30 Aligned_cols=244 Identities=13% Similarity=0.188 Sum_probs=148.9
Q ss_pred CCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC-ceeeE
Q 047837 4 NHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN-LAFIS 82 (882)
Q Consensus 4 ~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t-~~~~~ 82 (882)
.+...||... .++.-+|.++.|+|+++.+.+....-. ..|..-.|-.+..+-.+. +..|+-|+++. ..+++
T Consensus 69 dsAIMnP~~~-iiALrag~~lQiFnle~K~klks~~~~---e~VvfWkWis~~~l~lVT----~taVyHWsi~~~s~P~k 140 (494)
T 1bpo_A 69 DSAIMNPASK-VIALKAGKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNTVALVT----DNAVYHWSMEGESQPVK 140 (494)
T ss_dssp SEEEECSSSS-CEEEEETTEEEEEETTTTEEEEEEECS---SCCCEEEEEETTEEEEEC----SSEEEEEESSSSCCCEE
T ss_pred ceeeeCCCCc-EEEEecCCeEEEEchHHhhhhcceecC---CCceEEEecCCCeEEEEc----CCeeEEecccCCCCchh
Confidence 3456788864 788888999999999998887665443 456666665555444444 44799999974 45666
Q ss_pred Eeeccc----cceeEEEECCCCCEEEEEc---------CEEEEEEcCcceeeeeeecCCcccceeEEEEccC---CCEEE
Q 047837 83 ELKGHL----YGVECIAFSPDGEHLVTVG---------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSD---AKFIV 146 (882)
Q Consensus 83 ~l~~h~----~~V~~lafspdg~~Las~~---------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d---~~~l~ 146 (882)
.|.-|. ..|..-..++|.++++-.| |.+.+|..+.+. -+.+++|. +....+.+..+ .++++
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha--a~F~~~~~~g~~~~~~lf~ 217 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA--ASFAQFKMEGNAEESTLFC 217 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSE--EEEEEEECTTCSSEEEEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeee--eeeEEEecCCCCCCceEEE
Confidence 666553 4688888899999998766 789999976543 34456653 33333332211 12444
Q ss_pred EECC----CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEcc
Q 047837 147 TAGK----KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTD 222 (882)
Q Consensus 147 ~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 222 (882)
.+.. +.++|-++..... +...+ ..+.+.+.+.++ .
T Consensus 218 fa~r~~~g~kLhi~Ei~~~~~-------~~~~f--~kk~vdv~fppe---------------------~----------- 256 (494)
T 1bpo_A 218 FAVRGQAGGKLHIIEVGTPPT-------GNQPF--PKKAVDVFFPPE---------------------A----------- 256 (494)
T ss_dssp EEECSTTCCEEEEEECSCCCT-------TCCCC--CCEEEECCCCTT---------------------S-----------
T ss_pred EEEecCCCcEEEEEEcCCCcc-------CCCCc--cceeeeeeCCcc---------------------c-----------
Confidence 4433 4677777743210 00001 111111111110 0
Q ss_pred CceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceecccccccCcccCCCCCccccchhhhcc
Q 047837 223 AGILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHYSEAKKCNGENDTVSTAKATEL 302 (882)
Q Consensus 223 ~g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (882)
......++.+++.-..++..+.-|.|.+||++++.++..-..+...
T Consensus 257 -----------------~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~----------------- 302 (494)
T 1bpo_A 257 -----------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET----------------- 302 (494)
T ss_dssp -----------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----------------
T ss_pred -----------------ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc-----------------
Confidence 0112256788888888999999999999999999887654322111
Q ss_pred ccccCCCCCCcEEEeecCCCeEEEEeCCceEEEEEccccc
Q 047837 303 YFKLTPTIPNAIACQFSTSEKLVVVYGDHSLYVWDIHDVN 342 (882)
Q Consensus 303 ~~~~~~~~~~~~~~~~s~~~~ll~~~~d~~i~iwd~~~~~ 342 (882)
-..++.....+-++.....|.|.--.++...
T Consensus 303 ---------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 303 ---------IFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp ---------EEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred ---------eEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 1112333444567777788888777776554
No 299
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.80 E-value=0.14 Score=61.82 Aligned_cols=171 Identities=13% Similarity=0.172 Sum_probs=96.1
Q ss_pred cEEEEEcCCCceeEEEeec-CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec
Q 047837 500 TIHLYDVKRNFDLIESIDD-HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP 578 (882)
Q Consensus 500 ~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 578 (882)
.|++.+.... ..+..+.. ....|...+.+ +.+++.++ ++.+.++++..+. ..... ...-...|.|+++.|
T Consensus 493 ~Irli~~~~~-~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~-L~~~~----~~~l~~evscl~i~~ 563 (1158)
T 3ei3_A 493 SVRLVSQEPK-ALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQE-LRQIS----HTEMEHEVACLDITP 563 (1158)
T ss_dssp CEEEEESSSC-CEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTE-EEEEE----EEECSSCEEEEECCC
T ss_pred EEEEEECCCC-eEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCc-eeeec----ccCCCCceEEEEeec
Confidence 3566665433 33444443 23456666654 45666665 5778888877532 22211 112245899999986
Q ss_pred C------CCEEEEEeC-CCcEEEEEccCCceEEEEEeccCCCCcEEEEEC--CCCCEEEEEeCCCcEEEEEc--cCCeEE
Q 047837 579 T------MEVVITVGQ-DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD--PSGSYLVCSYSNKSICLYDF--ISGEMV 647 (882)
Q Consensus 579 ~------~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~l~~~~~dg~i~iwd~--~~~~~~ 647 (882)
. ++++++|.. |++|+|+++.+.+.+..... +....+.++.+. ....+|.+|-.||.+.-+.+ .+|+..
T Consensus 564 ~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L-~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~ 642 (1158)
T 3ei3_A 564 LGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 642 (1158)
T ss_dssp CSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC-CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred CCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC-CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence 3 368999996 99999999998776654431 122344555443 23468899999998765554 456543
Q ss_pred E---EEccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 047837 648 A---KAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVK 681 (882)
Q Consensus 648 ~---~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vw 681 (882)
. .+.| ..++.=..|...|..-+-+..+....++
T Consensus 643 d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy 678 (1158)
T 3ei3_A 643 DRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIY 678 (1158)
T ss_dssp EEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEE
T ss_pred cceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEE
Confidence 2 2333 3455444444444333333333433333
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.80 E-value=0.0042 Score=62.02 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=119.2
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeec----CC--CCEEEEEE---ccCCCEEEEEe-------------CCCeEEEEe
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDD----HS--AAVTAVKF---TCNGRKILSCS-------------ADRSLVVRD 548 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~----h~--~~v~~~~~---s~~~~~l~s~~-------------~dg~i~vwd 548 (882)
++++.-..++|..|+...+......+.+ .. ..+..|.| .|+++++++.. .+..+..||
T Consensus 27 ~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~D 106 (334)
T 2p9w_A 27 FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFN 106 (334)
T ss_dssp EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEE
T ss_pred EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEc
Confidence 4455557899999998754222212222 11 13679999 68887777543 267799999
Q ss_pred Cc---cCccceeeeccceecc-------cCCceEEEEEecCCCEEEEEeCC-CcEEEEEccCCceEEEEEec----cCCC
Q 047837 549 VV---ETNSAYKISRRHQQLA-------SQGTVYDMDIDPTMEVVITVGQD-KKINSFSIAAGKLIRSFKQA----KDFG 613 (882)
Q Consensus 549 ~~---~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~~~----~~~~ 613 (882)
+. +++............. .......++..++|+..++++.. +.|..++.. |+.+..+... ....
T Consensus 107 l~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~ 185 (334)
T 2p9w_A 107 LPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRP 185 (334)
T ss_dssp SSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCC
T ss_pred CCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCccccc
Confidence 98 6665544432111000 11358899999999999988888 888777766 3333332211 1223
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE--EEEE-ccC---CCCeEEE-EECCCCCE-EEEEeCCCeEEEEeCCC
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM--VAKA-MGH---GEVITGV-TFLPDCKH-IVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~--~~~~-~~h---~~~v~~l-~~s~d~~~-l~s~~~dg~i~vwd~~~ 685 (882)
..+.|+++|+|+.|++....|.|..+|+.+... +..- .+. ......| .--.+|+. |++....+.+.+.+..+
T Consensus 186 G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 186 GYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred CcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 477999999999998887799999999875432 2111 021 1223443 33347777 55555666666665544
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.73 E-value=0.048 Score=55.88 Aligned_cols=102 Identities=4% Similarity=-0.095 Sum_probs=59.2
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEee----ccccceeEEEECCCCCEEEEEc-CEEEEEEcCcce
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELK----GHLYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAM 119 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~----~h~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~ 119 (882)
..+.+|+|.+++..+|+|. .+.| ++....|+.-..+. .....+.+|+|.+ ++.++.+. +.|.. ....|+
T Consensus 36 ~~~~~v~~~~~~~~~~~G~---~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGV---NATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SCEEEEEESSSSCEEEEET---TTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTS
T ss_pred CcEEEEEECCCCcEEEEcC---CCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCC
Confidence 5799999998888888763 4444 44444444322221 2345688999986 55555555 75544 323343
Q ss_pred eeeeeecC-CcccceeEEEEccCCCEEEEECCCc
Q 047837 120 LVMKLKAN-SSCSAITSACFSSDAKFIVTAGKKH 152 (882)
Q Consensus 120 ~~~~~~~~-~~~~~v~~l~fs~d~~~l~~~~~~~ 152 (882)
--..+... .....+..+.+.++++.++++..+.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 143 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGA 143 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEETTCC
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEeCCcc
Confidence 22222211 1124577888888777777665554
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.025 Score=60.58 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=98.8
Q ss_pred EEEEEEcc-CCCEEEEEeCCCeEEEEeCc-------cCcc-----------ceeeeccceecccCCceEEEEEecCCCEE
Q 047837 523 VTAVKFTC-NGRKILSCSADRSLVVRDVV-------ETNS-----------AYKISRRHQQLASQGTVYDMDIDPTMEVV 583 (882)
Q Consensus 523 v~~~~~s~-~~~~l~s~~~dg~i~vwd~~-------~~~~-----------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 583 (882)
...++++| ++.++++-..++.|..+|+. ++.. ...+. ........+.++|+|+|++|
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~----~~~~~~~p~~ia~~p~G~~l 324 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF----TIADPSWEFQIFIHPTGKYA 324 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE----ECSSSSCCEEEEECTTSSEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE----ecCCCCCceEEEEcCCCCEE
Confidence 35678899 45556666678889999987 3332 00111 11122456799999999965
Q ss_pred EEE-eCCCcEEEEEcc--CCce--EEEEEec-c------------CCCCcE-EEEEC-------CCCCEEEEEeCCCcEE
Q 047837 584 ITV-GQDKKINSFSIA--AGKL--IRSFKQA-K------------DFGDPM-KVTVD-------PSGSYLVCSYSNKSIC 637 (882)
Q Consensus 584 ~~~-~~d~~v~iwd~~--~~~~--~~~~~~~-~------------~~~~v~-~~~~s-------pdg~~l~~~~~dg~i~ 637 (882)
..+ .....|+.++.. ++.. ...+... + ....+. .++.. ++|.++++-..++.|+
T Consensus 325 YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr 404 (496)
T 3kya_A 325 YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVR 404 (496)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEE
T ss_pred EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEE
Confidence 544 456789886654 3322 1233211 1 112345 45554 5677777777888999
Q ss_pred EEEccCCeEEEEEccC------------------------CCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCCCCcc
Q 047837 638 LYDFISGEMVAKAMGH------------------------GEVITGVTFLPD-CKHIVSVGGDGLQRVKEKYGILPPRN 691 (882)
Q Consensus 638 iwd~~~~~~~~~~~~h------------------------~~~v~~l~~s~d-~~~l~s~~~dg~i~vwd~~~~~~~~~ 691 (882)
.++ .+|. +.++.+. -.....|+++++ |.++++=.....||.+++.+......
T Consensus 405 ~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 405 KVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp EEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred EEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 999 5674 3344321 123678999997 66666556778999999987666543
No 303
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.62 E-value=0.045 Score=62.97 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=91.0
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC-C-CeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA-D-RSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
++++-...+.|.+.++... .....+.........|+++|.+.+|+.+.. . +.|...++.... ...+.... -
T Consensus 485 LY~tD~~~~~I~v~~ldG~-~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~-----l 557 (791)
T 3m0c_C 485 IYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN-----I 557 (791)
T ss_dssp EEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSS-----C
T ss_pred EEEEecCCCeEEEEeCCCC-eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCC-----C
Confidence 5556667788999998754 222233334456889999997666665543 3 678888876332 22222111 1
Q ss_pred CceEEEEEecCCCEEEEEe-CCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047837 569 GTVYDMDIDPTMEVVITVG-QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMV 647 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~ 647 (882)
.....|++++.+..|+.+. ....|..+++........+...........|++..+ +++++-...+.|...|..+|+.+
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCC
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcce
Confidence 4678999998777666654 456899999874443333331122345566666432 33444445667777777676555
Q ss_pred EEE
Q 047837 648 AKA 650 (882)
Q Consensus 648 ~~~ 650 (882)
..+
T Consensus 637 ~~l 639 (791)
T 3m0c_C 637 NLL 639 (791)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.54 E-value=0.00028 Score=80.78 Aligned_cols=139 Identities=6% Similarity=0.009 Sum_probs=86.8
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC----ceeeEEeeccccc
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN----LAFISELKGHLYG 90 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t----~~~~~~l~~h~~~ 90 (882)
.+++...+.|.+.++++.....++... ..+.+|+|++++..|+.... ..+.|+.+++.+ ......+......
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~~---~~p~gla~d~~~~~Ly~sD~-~~~~I~~~~~~g~~~~~~~~~~i~~~~~~ 454 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQA 454 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCCC---TTCCCCEEETTTTEEEECCT-TTTSBEEEESCCCCC-CCCCCBCCSCC--
T ss_pred eEEecCccceEEEeCCCCcceeeeccC---cceEEEccccccCeEEEEec-CCCeEEEEecCCCCCCcceEEEEeCCCCC
Confidence 456666778899999877665443222 46778999998888888753 256899999875 2222222222234
Q ss_pred eeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---CcEEEEEcc
Q 047837 91 VECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---KHLKFWTIG 159 (882)
Q Consensus 91 V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---~~i~iwd~~ 159 (882)
...|++.+.+..|..++ +.|.+.++........+.... .....|+++|++.+|+.+.. +.|...++.
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~--~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS--CCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC--CCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 56789997666665555 889999987554333333222 45678899997666555432 345555543
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.54 E-value=0.0026 Score=63.52 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=108.8
Q ss_pred CCEEEEEEccCCCEEE-EEeCCCeEEEEeCccCccceeeecccee--cccCCceEEEEE---ecCCCEEEEEe-------
Q 047837 521 AAVTAVKFTCNGRKIL-SCSADRSLVVRDVVETNSAYKISRRHQQ--LASQGTVYDMDI---DPTMEVVITVG------- 587 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~---sp~~~~l~~~~------- 587 (882)
.-..+++|++....|. +.-..++|..|+...+... .+...... ......+..+.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3345788987444554 4447899999998743222 22111100 011124689999 68887777544
Q ss_pred ------CCCcEEEEEcc---CCceEEEEEecc-----------CCCCcEEEEECCCCCEEEEEeCC-CcEEEEEccCCeE
Q 047837 588 ------QDKKINSFSIA---AGKLIRSFKQAK-----------DFGDPMKVTVDPSGSYLVCSYSN-KSICLYDFISGEM 646 (882)
Q Consensus 588 ------~d~~v~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~spdg~~l~~~~~d-g~i~iwd~~~~~~ 646 (882)
.+..|..||+. +++.+....... .......++..++|+..++++.. +.|...+.. |+.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence 26789999999 888776664211 11347899999999999988887 887777754 333
Q ss_pred EEEEc-c-----CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 647 VAKAM-G-----HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 647 ~~~~~-~-----h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
+..+. . ..-..+.|+++|||+.|+.....|.+..+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 33221 1 112367999999999999987799999999884
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.53 E-value=0.083 Score=52.10 Aligned_cols=178 Identities=11% Similarity=0.081 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCceeEEEeecCC----CCEEEEEEccCCCEEEEEeC-------CCeEEEEeCccCccceeeeccceeccc
Q 047837 499 RTIHLYDVKRNFDLIESIDDHS----AAVTAVKFTCNGRKILSCSA-------DRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
..|+-|++.....+.+.+..|. ..|.....+++.++++..+- .|.+.+|..+.. ..+....|-
T Consensus 126 taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGha---- 199 (365)
T 2xzh_A 126 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHA---- 199 (365)
T ss_dssp SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSE----
T ss_pred CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--ccceeeeee----
Confidence 4799999976556777776653 56778888899998875442 367889988743 333333331
Q ss_pred CCceEEEEEecCCC-----EEEEEeC---CCcEEEEEccCC---c-----eEEEE--EeccCCCCcEEEEECCCCCEEEE
Q 047837 568 QGTVYDMDIDPTME-----VVITVGQ---DKKINSFSIAAG---K-----LIRSF--KQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 568 ~~~v~~~~~sp~~~-----~l~~~~~---d~~v~iwd~~~~---~-----~~~~~--~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
+.. ..+-.+|. +++.+.. .+++++-++... . ....+ ......+-+.++..|+.-..+..
T Consensus 200 -a~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 200 -ASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp -EEE--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred -eee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 111 12222221 2332222 258888888432 1 11111 11123455678889988888888
Q ss_pred EeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 630 SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
-+.-|.|++||+++|.++..-+-....|-.-+-..+..-++.....|.|.--.+.+
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 88999999999999999988776667776555544544555566778776655554
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.36 E-value=0.037 Score=57.34 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=40.2
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe----E--EEEEccCCCCeEEEEECCCCCEEEEEe
Q 047837 613 GDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE----M--VAKAMGHGEVITGVTFLPDCKHIVSVG 673 (882)
Q Consensus 613 ~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~----~--~~~~~~h~~~v~~l~~s~d~~~l~s~~ 673 (882)
..+..++| .+|.++++....+.|...+++... . ...+..-...+..+++.|||.++++..
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 35677888 567777776667788888776432 1 122222346789999999998777664
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.36 E-value=0.05 Score=55.68 Aligned_cols=172 Identities=12% Similarity=0.122 Sum_probs=104.0
Q ss_pred CCCcEEEEEcCCCceeEE--Eeec-----CCCCEEEEEEcc--CCC-EEEEE-eC--CCeEEEEeCccCccceeeeccce
Q 047837 497 RDRTIHLYDVKRNFDLIE--SIDD-----HSAAVTAVKFTC--NGR-KILSC-SA--DRSLVVRDVVETNSAYKISRRHQ 563 (882)
Q Consensus 497 ~dg~v~iwd~~~~~~~~~--~~~~-----h~~~v~~~~~s~--~~~-~l~s~-~~--dg~i~vwd~~~~~~~~~~~~~~~ 563 (882)
.+|.|.++|..+...... .+.+ ..-....+.+.+ ++. +|+.+ .. +.+|.+|++..............
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688999999874211111 2222 224567777766 454 34444 22 56788988876544333322211
Q ss_pred ecccCCceEEEEEecCCCEEEEEeC-----------------CCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCE
Q 047837 564 QLASQGTVYDMDIDPTMEVVITVGQ-----------------DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 564 ~~~~~~~v~~~~~sp~~~~l~~~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
-......+++++.++|.+.++... .+.|..+|. ++. ..+. ..-...+.++||||+++
T Consensus 161 -g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~--~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 161 -HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVA--EGFDFANGINISPDGKY 234 (355)
T ss_dssp -CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEE--EEESSEEEEEECTTSSE
T ss_pred -cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEee--cCCcccCcceECCCCCE
Confidence 112357889999999998877541 234544544 432 2222 23456889999999988
Q ss_pred EEEEe-CCCcEEEEEccC-CeE--EEEEccCCCCeEEEEECC-CCCEEEEEeCC
Q 047837 627 LVCSY-SNKSICLYDFIS-GEM--VAKAMGHGEVITGVTFLP-DCKHIVSVGGD 675 (882)
Q Consensus 627 l~~~~-~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~s~-d~~~l~s~~~d 675 (882)
|..+. ..+.|..|++.. |+. ...+ ...+....+++.+ +|++.+++..+
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 76654 567899999863 432 2233 2346678899999 59888877644
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.27 E-value=0.0011 Score=75.89 Aligned_cols=153 Identities=10% Similarity=0.062 Sum_probs=89.3
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC-C-CeEEEEeCccCccceeeeccceecccC
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA-D-RSLVVRDVVETNSAYKISRRHQQLASQ 568 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~ 568 (882)
++++-...+.|.++++... .....+.........|+++|.+.+|+.+.. . +.|..+++.... ...+... ..
T Consensus 467 LY~tD~~~~~I~v~d~dg~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~-----~l 539 (699)
T 1n7d_A 467 IYWTDSVLGTVSVADTKGV-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTE-----NI 539 (699)
T ss_dssp CEECCTTTSCEEEEBSSSC-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCS-----SC
T ss_pred EEEEeccCCeEEEEecCCC-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeC-----CC
Confidence 3444455677888887654 222222222345678899986655554442 2 677777765322 1111111 11
Q ss_pred CceEEEEEecCCCEEE-EEeCCCcEEEEEccCCceEEEEEe-ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeE
Q 047837 569 GTVYDMDIDPTMEVVI-TVGQDKKINSFSIAAGKLIRSFKQ-AKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEM 646 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~ 646 (882)
.....|+|+|++..|+ +-...+.|..+|+... ..+.+.. .........|++..+ .++++....+.|..+|..+|+.
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 3567899999765554 4445678999998743 3333321 122344566777554 4455556678999999888887
Q ss_pred EEEEcc
Q 047837 647 VAKAMG 652 (882)
Q Consensus 647 ~~~~~~ 652 (882)
+..+..
T Consensus 618 ~~~i~~ 623 (699)
T 1n7d_A 618 VNLLAE 623 (699)
T ss_dssp EECCCT
T ss_pred eEEeec
Confidence 776643
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.22 E-value=0.089 Score=54.40 Aligned_cols=137 Identities=16% Similarity=0.093 Sum_probs=79.5
Q ss_pred CCCccccCCCCCeEEEeeceEEEEEECCCCceEEEEEe----cCCCCCeEEEEEcCC---CCEEEEeecC--CC----Ce
Q 047837 3 PNHNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVS----HRMPKPLCCVAMSRD---GRYVAAGESG--PQ----PA 69 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~----h~~~~~I~~va~spd---g~~la~g~~~--~d----~~ 69 (882)
|.++++.|||. .++.-..+.|.++| .+++ ..+.. .........|+++|| +..|.++... .+ ..
T Consensus 31 P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEEETTE-EEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEEcCCCe-EEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 56789999976 44444457888887 4455 22211 111256899999998 5566555431 12 57
Q ss_pred EEEEECCCc-------eee-EEeec-cccceeEEEECCCCCEEEEEc---------------CEEEEEEcCcce------
Q 047837 70 VLVWDCANL-------AFI-SELKG-HLYGVECIAFSPDGEHLVTVG---------------GYIYLWNWRSAM------ 119 (882)
Q Consensus 70 I~vwd~~t~-------~~~-~~l~~-h~~~V~~lafspdg~~Las~~---------------~~i~iWd~~~g~------ 119 (882)
|..|+.... +.+ ..+.. ....-..|+|.|||.+.++.+ +.|...+.. |+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence 888887654 111 11321 112346799999998777743 245555543 22
Q ss_pred ----eeeeeecCCcccceeEEEEcc-CCCEEEEE
Q 047837 120 ----LVMKLKANSSCSAITSACFSS-DAKFIVTA 148 (882)
Q Consensus 120 ----~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~ 148 (882)
.+.. .++ .....++|+| +++++++-
T Consensus 186 f~~~~i~a-~G~---rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 186 FPNSPIWS-YGH---RNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp STTCCEEE-ECC---SCCCEEEECTTTCCEEEEE
T ss_pred CCCCcEEE-Ecc---CCcceEEEeCCCCCEEEEe
Confidence 1111 111 3467899999 66666654
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.15 E-value=0.3 Score=50.33 Aligned_cols=179 Identities=11% Similarity=0.078 Sum_probs=114.6
Q ss_pred CcEEEEEcCCCceeEEEeecCC----CCEEEEEEccCCCEEEEEeC-------CCeEEEEeCccCccceeeeccceeccc
Q 047837 499 RTIHLYDVKRNFDLIESIDDHS----AAVTAVKFTCNGRKILSCSA-------DRSLVVRDVVETNSAYKISRRHQQLAS 567 (882)
Q Consensus 499 g~v~iwd~~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 567 (882)
..|+-|++.....+.+.+..|. ..|.....+++.++++..+- .|.+.+|..+.. ..+....|-
T Consensus 125 taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGha---- 198 (494)
T 1bpo_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHA---- 198 (494)
T ss_dssp SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSE----
T ss_pred CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeee----
Confidence 5799999976556777776653 56788888999999885432 467889998743 333333332
Q ss_pred CCceEEEEEecCC-----CEEEEEeC---CCcEEEEEccCC--------ceEEEE--EeccCCCCcEEEEECCCCCEEEE
Q 047837 568 QGTVYDMDIDPTM-----EVVITVGQ---DKKINSFSIAAG--------KLIRSF--KQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 568 ~~~v~~~~~sp~~-----~~l~~~~~---d~~v~iwd~~~~--------~~~~~~--~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
+.. ..+-.+| ..++.+.. .+++++-++... +....+ ......+-..++..|+.-..+..
T Consensus 199 -a~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 199 -ASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp -EEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred -eee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 111 1122222 13333333 268899888532 111111 11122445678999998888888
Q ss_pred EeCCCcEEEEEccCCeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 630 SYSNKSICLYDFISGEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 630 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
-..-|.|++||+++|.++..-+-....|..-+-.....-++.....|.|.--.+.+.
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 889999999999999999887766677766666555555666667887766665543
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.90 E-value=0.13 Score=53.05 Aligned_cols=202 Identities=10% Similarity=0.047 Sum_probs=103.0
Q ss_pred ceEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCceeEEEee---cCCCCEEEEEEccC---CCEEEEE
Q 047837 465 AEILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNFDLIESID---DHSAAVTAVKFTCN---GRKILSC 538 (882)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~~~~~~~~---~h~~~v~~~~~s~~---~~~l~s~ 538 (882)
..-..++|.|++. +++ +..+|.|++++ ......+..+. ........|+|+|+ +..|..+
T Consensus 31 ~~P~~ia~~pdG~-------------l~V-~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 31 EVPWALAFLPDGG-------------MLI-AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp SCEEEEEECTTSC-------------EEE-EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCe-------------EEE-EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 3455677777776 444 44558888888 22112222221 12456889999998 5555544
Q ss_pred eC-C-----CeEEEEeCccCcc--ceeeecccee-cccCCceEEEEEecCCCEEEEEeCC-------------CcEEEEE
Q 047837 539 SA-D-----RSLVVRDVVETNS--AYKISRRHQQ-LASQGTVYDMDIDPTMEVVITVGQD-------------KKINSFS 596 (882)
Q Consensus 539 ~~-d-----g~i~vwd~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d-------------~~v~iwd 596 (882)
.. . ..|..++...... ...+...... .........++|.|||.+.++.+.. +.|.-++
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 33 2 5677787763211 1111110000 0111234689999999766664321 4555555
Q ss_pred ccCC------------ceEEEEEeccCCCCcEEEEECC-CCCEEEEEeCCCcE------EEEEccCCe------------
Q 047837 597 IAAG------------KLIRSFKQAKDFGDPMKVTVDP-SGSYLVCSYSNKSI------CLYDFISGE------------ 645 (882)
Q Consensus 597 ~~~~------------~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~i------~iwd~~~~~------------ 645 (882)
.... .....+. .++ ..+..++|+| +|+++++-.....+ .|.-+..|.
T Consensus 176 ~dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~ 253 (352)
T 2ism_A 176 PEGEPAPGNPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGN 253 (352)
T ss_dssp TTSSBCTTCTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CCCCCCCCCcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCC
Confidence 5420 1111111 122 3367799999 67766654433331 122222222
Q ss_pred ------EEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 646 ------MVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 646 ------~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
++..+. +......++| .+|.++++.-..+.|...++..
T Consensus 254 ~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 254 DPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp CTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred CCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 222332 2335667888 5676666665666777766653
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.73 E-value=0.62 Score=47.33 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee--eEEe----eccccceeEEEECCC----CCEEEEE---c-CEE
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF--ISEL----KGHLYGVECIAFSPD----GEHLVTV---G-GYI 110 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~--~~~l----~~h~~~V~~lafspd----g~~Las~---~-~~i 110 (882)
.....|+|.|||+++++-. ..|.|++++..+++. +..+ .........|+|+|| +.+.++- . +.|
T Consensus 32 ~~P~~ia~~pdG~llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 5688999999999777753 267899998766653 2222 124567899999996 4443432 2 666
Q ss_pred EEEEcCcc----------eee-eeeecCCcccceeEEEEccCCCEEEEECC
Q 047837 111 YLWNWRSA----------MLV-MKLKANSSCSAITSACFSSDAKFIVTAGK 150 (882)
Q Consensus 111 ~iWd~~~g----------~~~-~~~~~~~~~~~v~~l~fs~d~~~l~~~~~ 150 (882)
.-|....+ +.+ ..+... ....-..|+|.|||.+.++.++
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEECBC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEEECC
Confidence 66765542 111 122211 1134567999999998888776
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.71 E-value=0.55 Score=48.40 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=47.0
Q ss_pred CCcEEEEECC-------CCCEEEEEeCCCcEEEEEccCCeEEEE--E-ccCCCCeEEEEECCCCCEEEEEe-CCCeEEEE
Q 047837 613 GDPMKVTVDP-------SGSYLVCSYSNKSICLYDFISGEMVAK--A-MGHGEVITGVTFLPDCKHIVSVG-GDGLQRVK 681 (882)
Q Consensus 613 ~~v~~~~~sp-------dg~~l~~~~~dg~i~iwd~~~~~~~~~--~-~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~vw 681 (882)
..+..++|.. +|.++++....+.|...++..++.+.. + ......+..|++.|||.++++.. .+| +||
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEE
Confidence 4567788863 577888877788888888887654433 2 22345899999999999776543 344 444
Q ss_pred eC
Q 047837 682 EK 683 (882)
Q Consensus 682 d~ 683 (882)
.+
T Consensus 349 ri 350 (353)
T 2g8s_A 349 KV 350 (353)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.65 E-value=0.17 Score=51.59 Aligned_cols=151 Identities=10% Similarity=0.095 Sum_probs=85.6
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeec-cceecccCCceEEEEEecC---CCEEEEE-e--CCC
Q 047837 518 DHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISR-RHQQLASQGTVYDMDIDPT---MEVVITV-G--QDK 590 (882)
Q Consensus 518 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~---~~~l~~~-~--~d~ 590 (882)
..-.....|+|.|||+++++--..|.|++++...+.. ..+.. .............|+++|+ +..|... + .+.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 3445678999999999777766589999987653332 11111 1111123457889999995 3444332 2 345
Q ss_pred cEEEEEccCC----------ceEE-EEEeccCCCCcEEEEECCCCCEEEEEeC-------------CCcEEEEEccCC--
Q 047837 591 KINSFSIAAG----------KLIR-SFKQAKDFGDPMKVTVDPSGSYLVCSYS-------------NKSICLYDFISG-- 644 (882)
Q Consensus 591 ~v~iwd~~~~----------~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~-------------dg~i~iwd~~~~-- 644 (882)
.|.-|.+..+ +.+. .+. .........|+|.|||.+.++.+. .|.|.-.+....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p-~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIP-KGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEEC-CCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCC-CCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 5666665541 1111 122 122234567999999987777542 244544554321
Q ss_pred -------eEEEEEccCCCCeEEEEECCCCCEEEEE
Q 047837 645 -------EMVAKAMGHGEVITGVTFLPDCKHIVSV 672 (882)
Q Consensus 645 -------~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 672 (882)
..+. -.+|. ....++|+|+|++.++-
T Consensus 187 ~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 187 PGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEe
Confidence 1122 22453 34689999988766554
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.60 E-value=0.12 Score=52.76 Aligned_cols=160 Identities=11% Similarity=0.089 Sum_probs=93.7
Q ss_pred CEEEEEEccCCCEEEEE------------eCCCeEEEEeCccCccc-eeeeccce-ecccCCceEEEEEec--CCC-EEE
Q 047837 522 AVTAVKFTCNGRKILSC------------SADRSLVVRDVVETNSA-YKISRRHQ-QLASQGTVYDMDIDP--TME-VVI 584 (882)
Q Consensus 522 ~v~~~~~s~~~~~l~s~------------~~dg~i~vwd~~~~~~~-~~~~~~~~-~~~~~~~v~~~~~sp--~~~-~l~ 584 (882)
..-+++..|+|..++++ ..+|.|.++|..+.... .++..... .....-....+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34456667766554444 26899999998743221 22211100 011223667777766 454 344
Q ss_pred EE-eC--CCcEEEEEccCCc----eEEEEEeccCCCCcEEEEECCCCCEEEEEeC-----------------CCcEEEEE
Q 047837 585 TV-GQ--DKKINSFSIAAGK----LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS-----------------NKSICLYD 640 (882)
Q Consensus 585 ~~-~~--d~~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------dg~i~iwd 640 (882)
++ .. +.+|.+|++..+. .+..+. .......+.+++.++|++.++... .|.|+-+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEEC-CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccc-cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 44 33 4578888876542 222333 123456889999999998887641 24455555
Q ss_pred ccCCeEEEEEccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q 047837 641 FISGEMVAKAMGHGEVITGVTFLPDCKHIVSVG-GDGLQRVKEKYG 685 (882)
Q Consensus 641 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~i~vwd~~~ 685 (882)
. ++.. .+...-...+.++|+||+++|+.+. ..+.|..|++..
T Consensus 210 ~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 P--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 4 3322 2222334678999999998887765 578899999864
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.59 E-value=0.13 Score=52.97 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=71.0
Q ss_pred cCCCCEEEEeecCCCCeEEEEECCCceeeEEeecc----ccceeEEEECCCCCEEEEEc-CEEEEEEcCcce--------
Q 047837 53 SRDGRYVAAGESGPQPAVLVWDCANLAFISELKGH----LYGVECIAFSPDGEHLVTVG-GYIYLWNWRSAM-------- 119 (882)
Q Consensus 53 spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h----~~~V~~lafspdg~~Las~~-~~i~iWd~~~g~-------- 119 (882)
+.+|.-|.++. ++.||.-++.....-+.|+-. -..|..+..||+|++||..+ ..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~---~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ---DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE---TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE---CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccc
Confidence 44555566553 446777787755445555542 23688899999999999999 999999887332
Q ss_pred ----eeeeeecCC----cccceeEEEEcc----CCCEEEEECCCcEEEEEccc
Q 047837 120 ----LVMKLKANS----SCSAITSACFSS----DAKFIVTAGKKHLKFWTIGS 160 (882)
Q Consensus 120 ----~~~~~~~~~----~~~~v~~l~fs~----d~~~l~~~~~~~i~iwd~~~ 160 (882)
..+.+.... ...+|..+.|+| ++.+++...++.|++||+..
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 112222211 126799999999 33455555678999999975
No 318
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.56 E-value=0.11 Score=48.11 Aligned_cols=184 Identities=10% Similarity=-0.007 Sum_probs=101.2
Q ss_pred EEEEEcCCCcEEEEEcCCCce-----eEEEeec-CCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeecccee
Q 047837 491 FLASGGRDRTIHLYDVKRNFD-----LIESIDD-HSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQ 564 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~-----~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 564 (882)
+|+....| +++.=...+... ....+-. --..++.++|+|+|.+.++ .+|.+.-.+..+.... ........
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccE
Confidence 56666666 665554444321 1112211 1246789999999987766 6676665554332111 11111111
Q ss_pred ccc--CCceEEEEEecCCCEEEEEeCCCcEEEEEccCCceE-----EEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 047837 565 LAS--QGTVYDMDIDPTMEVVITVGQDKKINSFSIAAGKLI-----RSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC 637 (882)
Q Consensus 565 ~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~ 637 (882)
++. -..-.++.|.|+|.+.++ .||.|+-++-.+.... ........-..+..+.|.|+|.+.++. |+.++
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 100 012478999999988887 6698888876432111 111111233567999999999988888 77654
Q ss_pred EEEccCCe------EEEEE-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 047837 638 LYDFISGE------MVAKA-MGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 638 iwd~~~~~------~~~~~-~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
-+...++. ....+ ......-+-+.|.+++.+.+.. ++ ++|....+
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 44333221 01111 1223344557799999877766 66 55655443
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.49 E-value=0.093 Score=62.46 Aligned_cols=207 Identities=14% Similarity=0.201 Sum_probs=125.2
Q ss_pred CccccCCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCC-ceeeEE
Q 047837 5 HNIKKPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCAN-LAFISE 83 (882)
Q Consensus 5 ~~~~~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t-~~~~~~ 83 (882)
+.+.||... .++.-+|.++.|+|+++.+.+....- +..|..-.|-.+..+-.+. +..|+.|++.. ..+++.
T Consensus 70 sAIMnP~~~-iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~~l~lVT----~~aVyHW~~~~~s~P~k~ 141 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVT----DNAVYHWSMEGESQPVKM 141 (1630)
T ss_pred hhccCCCcc-eEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCCeeEEEc----CCeEEEeccCCCCccHHH
Confidence 456788864 78888899999999998877655433 3567777776555444444 44799999974 345555
Q ss_pred eecc----ccceeEEEECCCCCEEEEEc---------CEEEEEEcCcceeeeeeecCCcccceeEEEEc---cCCCEEEE
Q 047837 84 LKGH----LYGVECIAFSPDGEHLVTVG---------GYIYLWNWRSAMLVMKLKANSSCSAITSACFS---SDAKFIVT 147 (882)
Q Consensus 84 l~~h----~~~V~~lafspdg~~Las~~---------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs---~d~~~l~~ 147 (882)
|.-| ...|..-.-+++.++++..| |.+.++..+.+. -+.+.+|. +....+... +..++++.
T Consensus 142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha--~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA--ASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhH--hhhheeccCCCCCCceEEEE
Confidence 5544 45688888899999998766 888999876543 23344443 222222221 12234443
Q ss_pred ECC----CcEEEEEcccCccceeccccCccceeecCccccccccccceEEEeeecccccCCcccccccCceeEEEEEccC
Q 047837 148 AGK----KHLKFWTIGSSATARTRLNKGTESLTLHAKPVNLGIQKESYFVSVISATWTDNGVVNQEQAGESFTIYALTDA 223 (882)
Q Consensus 148 ~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (882)
+.. +.++|-++..... +...+ ..+.+.+.+.++
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~-------~~~~f--~kk~~~~~~~~~---------------------------------- 255 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPT-------GNQPF--PKKAVDVFFPPE---------------------------------- 255 (1630)
T ss_pred EEecCCCceEEEEecCCCcc-------CCCCC--ccccccccCCcc----------------------------------
Confidence 332 4677777743211 00111 111111111110
Q ss_pred ceEEEEccCceeeeEeeceeeeeEEEecCCCEEEEEecCCeEEeeecccceeccccc
Q 047837 224 GILYIVHSGLSVTKSVDLKVKNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLH 280 (882)
Q Consensus 224 g~i~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 280 (882)
.......++..++.-..+...+.-|.|.+||+.+|.++..-.
T Consensus 256 ---------------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 256 ---------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred ---------------cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 001112567788888888899999999999999998875543
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.47 E-value=0.98 Score=46.48 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-eeEEee---ccccceeEEEECCC---CCEE-EEEc---------
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA-FISELK---GHLYGVECIAFSPD---GEHL-VTVG--------- 107 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~-~~~~l~---~h~~~V~~lafspd---g~~L-as~~--------- 107 (882)
.....|+|.|||+++++ .. ++.|+++| .+++ .+..+. ........|+|+|| +.+| ++-.
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~--~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ER--PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ET--TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEEE-eC--CCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 56889999999985554 43 57899997 4554 233221 22456889999998 4444 3321
Q ss_pred CEEEEEEcCcc-------eee-eeeecCCcccceeEEEEccCCCEEEEECC
Q 047837 108 GYIYLWNWRSA-------MLV-MKLKANSSCSAITSACFSSDAKFIVTAGK 150 (882)
Q Consensus 108 ~~i~iWd~~~g-------~~~-~~~~~~~~~~~v~~l~fs~d~~~l~~~~~ 150 (882)
..|..|+...+ +.+ ..+.... ......|+|.|||.+.++.++
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECC
Confidence 46777776543 111 2232111 123467999999998887665
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.29 E-value=0.22 Score=51.32 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=88.2
Q ss_pred cCCCCCeEEEeeceEEEEEECCCCceEEEEEec--CCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-------
Q 047837 9 KPDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSH--RMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA------- 79 (882)
Q Consensus 9 ~pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h--~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~------- 79 (882)
...+...+++..|+.|+.-++.....-+.|.-. -.-..|..+.+||+|++||..+ +..|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g---~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN---DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC---SSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec---CCeEEEEEecCccccCcccc
Confidence 344444788888999999898755443444332 1113688899999999999983 4589998887332
Q ss_pred -----eeEEeec------cccceeEEEECCC---CCEEEEEc--CEEEEEEcCcce--eeeeee-------cCCccccee
Q 047837 80 -----FISELKG------HLYGVECIAFSPD---GEHLVTVG--GYIYLWNWRSAM--LVMKLK-------ANSSCSAIT 134 (882)
Q Consensus 80 -----~~~~l~~------h~~~V~~lafspd---g~~Las~~--~~i~iWd~~~g~--~~~~~~-------~~~~~~~v~ 134 (882)
..+.+.- ...+|..+.|+|- +..|++.. +.|++||+.... +. .++ .......|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 1122221 2567999999993 45666665 999999998632 22 222 111225788
Q ss_pred EEEEccCCCEEEE
Q 047837 135 SACFSSDAKFIVT 147 (882)
Q Consensus 135 ~l~fs~d~~~l~~ 147 (882)
+++|.+++-.|..
T Consensus 184 S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 184 DLEFSKDGLTLYC 196 (452)
T ss_dssp EEEECTTSSCEEE
T ss_pred EEEEcCCCcEEEE
Confidence 8999887654444
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.13 E-value=0.21 Score=50.32 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=91.5
Q ss_pred EEEEEcCC-----CcEEEEEcCCCc----eeEEEeecCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEeCccCccce
Q 047837 491 FLASGGRD-----RTIHLYDVKRNF----DLIESIDDHSAAVTAVKFTCNGRKILSCSAD-----RSLVVRDVVETNSAY 556 (882)
Q Consensus 491 ~l~~g~~d-----g~v~iwd~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~ 556 (882)
+++.|+.+ ..+.+||..++. ..+..+......-..+.+ +++.++.|+.+ ..+.+||+.+..=
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-- 140 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW-- 140 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE--
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE--
Confidence 55556543 468899987752 233222222222222333 66777777643 3588888875431
Q ss_pred eeeccceecccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEe
Q 047837 557 KISRRHQQLASQGTVYDMDIDPTMEVVITVGQD-----KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSY 631 (882)
Q Consensus 557 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 631 (882)
...... .. ......+..-++++++.|+.+ ..+.+||+.+.+-...-...........+.+ ++++++.|+
T Consensus 141 ~~~~~~---p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 214 (301)
T 2vpj_A 141 SMLGDM---QT-AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGG 214 (301)
T ss_dssp EEEEEC---SS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred EECCCC---CC-CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeC
Confidence 111110 00 111111222367777777754 4689999887654332110111112222333 567777776
Q ss_pred CC-----CcEEEEEccCCeEEEEE--ccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCC
Q 047837 632 SN-----KSICLYDFISGEMVAKA--MGHGEVITGVTFLPDCKHIVSVGGDG-----LQRVKEKYG 685 (882)
Q Consensus 632 ~d-----g~i~iwd~~~~~~~~~~--~~h~~~v~~l~~s~d~~~l~s~~~dg-----~i~vwd~~~ 685 (882)
.+ ..+.+||+.+.+....- .........+.+ ++++++.++.++ .+.+||+.+
T Consensus 215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 54 46899999887654321 111111122222 666777776543 455666543
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.99 E-value=0.66 Score=46.51 Aligned_cols=134 Identities=12% Similarity=0.033 Sum_probs=70.2
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC---CCeEEEEECCCce-----eeEEeeccccceeEE
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP---QPAVLVWDCANLA-----FISELKGHLYGVECI 94 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~---d~~I~vwd~~t~~-----~~~~l~~h~~~V~~l 94 (882)
.+.+||+.+++-... ..-.. ......+..-++++++.|.... ...+.+||..+.+ .+..+......-.++
T Consensus 32 ~~~~~d~~~~~W~~~-~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFL-PSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CEEEEETTTTEEEEC-CCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred EEEEEcCCCCeEEeC-CCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 689999998765432 21111 1111222234677777775321 2469999998765 222232222222222
Q ss_pred EECCCCCEEEEEc-------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC------CcEEEEEcccC
Q 047837 95 AFSPDGEHLVTVG-------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK------KHLKFWTIGSS 161 (882)
Q Consensus 95 afspdg~~Las~~-------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~------~~i~iwd~~~~ 161 (882)
.+ +++.++.|+ ..+.++|..+.+-...-..+. ......+..-++++++.+|. ..+.+||+.+.
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT--AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS--CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC--CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 33 666667665 478999988775433222221 11111222236677777653 34777776654
Q ss_pred c
Q 047837 162 A 162 (882)
Q Consensus 162 ~ 162 (882)
.
T Consensus 186 ~ 186 (301)
T 2vpj_A 186 H 186 (301)
T ss_dssp E
T ss_pred c
Confidence 3
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.88 E-value=0.25 Score=49.69 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=88.5
Q ss_pred EEEEEcCC-----CcEEEEEcCCCc-eeEEEeecCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEeCccCccceeee
Q 047837 491 FLASGGRD-----RTIHLYDVKRNF-DLIESIDDHSAAVTAVKFTCNGRKILSCSADR-----SLVVRDVVETNSAYKIS 559 (882)
Q Consensus 491 ~l~~g~~d-----g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~ 559 (882)
+++.|+.+ ..+.+||..+.. ..+..+......-..+.+ +++.++.|+.++ .+.+||+.+.. ....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~ 139 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHV 139 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE--EEEE
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe--Eeec
Confidence 55555543 358888887641 122222211122222323 677777777553 47778876442 1111
Q ss_pred ccceecccCCceEEEEEecCCCEEEEEeCC-------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQD-------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
... .....-.+++. -++++++.|+.+ ..+.+||+.+.+-...-...........+.+ ++++++.|+.
T Consensus 140 ~~~---p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 213 (302)
T 2xn4_A 140 APM---NTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGH 213 (302)
T ss_dssp CCC---SSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred CCC---CCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCC
Confidence 111 00011112222 256677776643 3588999987653322110111112222333 5777777765
Q ss_pred C-----CcEEEEEccCCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCC
Q 047837 633 N-----KSICLYDFISGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGDG-----LQRVKEKYG 685 (882)
Q Consensus 633 d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~dg-----~i~vwd~~~ 685 (882)
+ ..+.+||..+.+.... +......-..+.+ ++++++.|+.++ .+.+||+.+
T Consensus 214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCC
Confidence 4 3689999988754332 1111111112222 666777776543 356666543
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.86 E-value=0.56 Score=50.18 Aligned_cols=111 Identities=7% Similarity=0.071 Sum_probs=62.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceec---ccCCceEEEEEecC---CCEEEEEeC-----
Q 047837 520 SAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQL---ASQGTVYDMDIDPT---MEVVITVGQ----- 588 (882)
Q Consensus 520 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~---~~~l~~~~~----- 588 (882)
-.....|+|.|+|+++++-...+.|++++...+.. ..+....... ........|+|+|+ +..|.....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999999777655445788887643322 1111111111 12356789999995 555444332
Q ss_pred --------CCcEEEEEccCC--c-----eEE-EEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 589 --------DKKINSFSIAAG--K-----LIR-SFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 589 --------d~~v~iwd~~~~--~-----~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
...|.-|+...+ + .+. .+. .........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 134666665432 1 111 122 122345789999999988776543
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.79 E-value=0.29 Score=49.36 Aligned_cols=183 Identities=12% Similarity=0.056 Sum_probs=90.7
Q ss_pred EEEEEcCC----CcEEEEEcCCCc-eeEEEeecCCCCEEEEEEccCCCEEEEEeCC------CeEEEEeCccCccceeee
Q 047837 491 FLASGGRD----RTIHLYDVKRNF-DLIESIDDHSAAVTAVKFTCNGRKILSCSAD------RSLVVRDVVETNSAYKIS 559 (882)
Q Consensus 491 ~l~~g~~d----g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~ 559 (882)
+++.|+.+ ..+.+||..++. ..+..+......-..+.+ +++.++.|+.+ ..+.+||..+.. ....
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~ 133 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTK 133 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEE
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeC
Confidence 55666543 568889987752 222222222222222333 67777777765 458888887543 1111
Q ss_pred ccceecccCCceEEEEEecCCCEEEEEeC---------CCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEE
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQ---------DKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS 630 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 630 (882)
... .....-.+++ .-++++++.|+. -..+.+||+.+.+-...-........-..+.+ ++++++.|
T Consensus 134 ~~~---p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G 207 (306)
T 3ii7_A 134 PSM---LTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVG 207 (306)
T ss_dssp CCC---SSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CCC---cCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEe
Confidence 110 0001111122 236666676653 34588999987643322110111112222223 56777777
Q ss_pred eCC-----CcEEEEEccCCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCC
Q 047837 631 YSN-----KSICLYDFISGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGD-----GLQRVKEKYG 685 (882)
Q Consensus 631 ~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~d-----g~i~vwd~~~ 685 (882)
+.+ ..+.+||+.+.+.... +.........+.+ ++++++.|+.+ ..+.+||+..
T Consensus 208 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp CEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 643 3689999988754322 1111112223333 67777777754 3455666543
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.74 E-value=0.22 Score=46.09 Aligned_cols=111 Identities=8% Similarity=0.021 Sum_probs=70.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee------EEee-ccccceeEEEECCCCCEEEEEcCEEE
Q 047837 39 VSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI------SELK-GHLYGVECIAFSPDGEHLVTVGGYIY 111 (882)
Q Consensus 39 ~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~------~~l~-~h~~~V~~lafspdg~~Las~~~~i~ 111 (882)
.++..-..++.++|+|||.+-|+ . ++.++-.+..+.+.. ..+- +--..-.++.|.|+|.+.++.+|.|+
T Consensus 35 iG~~gw~~~~~laf~P~G~LYaV-~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~dG~iy 110 (236)
T 1tl2_A 35 IGKGGWSNFKFLFLSPGGELYGV-L---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSKDKLY 110 (236)
T ss_dssp EESSSCTTCSEEEECTTSCEEEE-E---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEETTEEE
T ss_pred cCccccccceeEEECCCccEEEE-e---CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeCCCEEE
Confidence 35532257889999999998887 2 567777776552211 1111 01112589999999999999449998
Q ss_pred EEEcCcceee-----eeeecCCcccceeEEEEccCCCEEEEECCCcEE
Q 047837 112 LWNWRSAMLV-----MKLKANSSCSAITSACFSSDAKFIVTAGKKHLK 154 (882)
Q Consensus 112 iWd~~~g~~~-----~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~ 154 (882)
-++-.+...- ...-+...-..+..|.|.|+|.+-++. ++.+.
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 8886331110 011111112578999999999999988 76643
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.71 E-value=1.2 Score=44.83 Aligned_cols=133 Identities=10% Similarity=0.059 Sum_probs=69.2
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC--CCCeEEEEECCCceeeE--EeeccccceeEEEECC
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG--PQPAVLVWDCANLAFIS--ELKGHLYGVECIAFSP 98 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~--~d~~I~vwd~~t~~~~~--~l~~h~~~V~~lafsp 98 (882)
.+.+||+.+++-... ..-.. ..-.+.+..-++++++.|..+ .-..+.+||..+.+-.. .+......-.++.+
T Consensus 25 ~~~~~d~~~~~W~~~-~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 100 (306)
T 3ii7_A 25 SCRYFNPKDYSWTDI-RCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-- 100 (306)
T ss_dssp SEEEEETTTTEEEEC-CCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--
T ss_pred eEEEecCCCCCEecC-CCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--
Confidence 799999998875433 11111 111122222477777787432 12579999998875432 22222222222222
Q ss_pred CCCEEEEEc--------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC----------CcEEEEEccc
Q 047837 99 DGEHLVTVG--------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK----------KHLKFWTIGS 160 (882)
Q Consensus 99 dg~~Las~~--------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~----------~~i~iwd~~~ 160 (882)
+++.++.|+ ..+.+||..+.+-...-..+. ......+..-++++++.+|. +.+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 666667665 358999988876433222111 11111112236666666652 2366777655
Q ss_pred C
Q 047837 161 S 161 (882)
Q Consensus 161 ~ 161 (882)
.
T Consensus 179 ~ 179 (306)
T 3ii7_A 179 E 179 (306)
T ss_dssp T
T ss_pred C
Confidence 4
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.70 E-value=2.3 Score=43.72 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceee---EEe----eccccceeEEEECCC---CCEEEEEc-------
Q 047837 45 KPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFI---SEL----KGHLYGVECIAFSPD---GEHLVTVG------- 107 (882)
Q Consensus 45 ~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~---~~l----~~h~~~V~~lafspd---g~~Las~~------- 107 (882)
.....|+|.|||++|.+++. .+.|++++.. ++.. ..+ .........|+|+|| +.+|....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~--~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLR--GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEEET--TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEEeC--CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 45789999999993445544 6789999854 4322 111 112456789999996 55554443
Q ss_pred ---CEEEEEEcCcc--e-----ee-eeeecC-CcccceeEEEEccCCCEEEEECC
Q 047837 108 ---GYIYLWNWRSA--M-----LV-MKLKAN-SSCSAITSACFSSDAKFIVTAGK 150 (882)
Q Consensus 108 ---~~i~iWd~~~g--~-----~~-~~~~~~-~~~~~v~~l~fs~d~~~l~~~~~ 150 (882)
..|..|+...+ + .+ ..+... ........|+|.|||.+.++.++
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 14666665432 1 11 111110 00122467999999988887766
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.37 E-value=1.5 Score=43.78 Aligned_cols=133 Identities=11% Similarity=0.110 Sum_probs=67.7
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCC---CCeEEEEECCCceeeE--EeeccccceeEEEEC
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGP---QPAVLVWDCANLAFIS--ELKGHLYGVECIAFS 97 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~---d~~I~vwd~~t~~~~~--~l~~h~~~V~~lafs 97 (882)
.+.+||+.+++-... ..-.. ......+..-++++++.|.... -..+.+||..+.+-.. .+......-.++.+
T Consensus 31 ~~~~~d~~~~~W~~~-~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 31 SVECYDFKEERWHQV-AELPS-RRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CEEEEETTTTEEEEE-CCCSS-CCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred cEEEEcCcCCcEeEc-ccCCc-ccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 689999998865433 21111 1111112223777888875322 2468999998775432 22222222222222
Q ss_pred CCCCEEEEEc-------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC--------CcEEEEEcccC
Q 047837 98 PDGEHLVTVG-------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--------KHLKFWTIGSS 161 (882)
Q Consensus 98 pdg~~Las~~-------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--------~~i~iwd~~~~ 161 (882)
+++.++.|+ ..+.+||..+.+-...-..+...... +++ .-++++++.+|. ..+.+||+.+.
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 566777766 46889998877543322211110111 122 225666666652 23666776544
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.06 E-value=0.63 Score=46.53 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=78.0
Q ss_pred ccCCCCCeEEEeec---------------eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEee--cCCCCeE
Q 047837 8 KKPDSSSKCAYVAG---------------CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGE--SGPQPAV 70 (882)
Q Consensus 8 ~~pd~~~~~~~~~~---------------~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~--~~~d~~I 70 (882)
++++|. .+.|... ..|...+++.++...+. ... +.+|++++++|+... ...+..|
T Consensus 60 i~~~g~-~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~~~------~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 60 INADKN-YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-PDP------CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEECSS-EEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-CSC------EEEEEEETTEEEEEEESSSSCEEE
T ss_pred EEEcCC-EEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-cCC------ccEEEEeCCEEEEEeecCCCCceE
Confidence 456654 6666653 46888888877654332 211 237888999999875 2345678
Q ss_pred EEEECCCceeeEEeeccccceeEEEECCCCCEEEEEc---CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEE
Q 047837 71 LVWDCANLAFISELKGHLYGVECIAFSPDGEHLVTVG---GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVT 147 (882)
Q Consensus 71 ~vwd~~t~~~~~~l~~h~~~V~~lafspdg~~Las~~---~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~ 147 (882)
+.-++... ....|..+.. ++|+++|+.|.-.+ .+|.+-++..+.....+. +... ..+.|++++|+-
T Consensus 132 y~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~ 200 (302)
T 3s25_A 132 YRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYY 200 (302)
T ss_dssp EEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEE
T ss_pred EEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEE
Confidence 88887643 3455554433 56788999998776 788888887665433222 1222 345688888876
Q ss_pred EC
Q 047837 148 AG 149 (882)
Q Consensus 148 ~~ 149 (882)
..
T Consensus 201 t~ 202 (302)
T 3s25_A 201 MD 202 (302)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.06 E-value=1.5 Score=44.11 Aligned_cols=133 Identities=10% Similarity=0.049 Sum_probs=68.5
Q ss_pred EEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec----C---CCCeEEEEECCCceeeE--EeeccccceeE
Q 047837 23 VLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES----G---PQPAVLVWDCANLAFIS--ELKGHLYGVEC 93 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~----~---~d~~I~vwd~~t~~~~~--~l~~h~~~V~~ 93 (882)
.+.+||+.+++-... ..-.. ......+..-++++++.|.. . ....+.+||..+.+-.. .+......-.+
T Consensus 40 ~~~~~d~~~~~W~~~-~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 40 YLEAYNPSNGTWLRL-ADLQV-PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CEEEEETTTTEEEEC-CCCSS-CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred eEEEEcCCCCeEeEC-CCCCc-ccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 799999998875443 21111 11111122236777777743 1 02468999998775332 22222222222
Q ss_pred EEECCCCCEEEEEc-------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC------CcEEEEEccc
Q 047837 94 IAFSPDGEHLVTVG-------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK------KHLKFWTIGS 160 (882)
Q Consensus 94 lafspdg~~Las~~-------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~------~~i~iwd~~~ 160 (882)
+.+ +++.++.|+ ..+.+||..+.+-...-..+.....-..+.+ ++++++.+|. +.+.+||+.+
T Consensus 118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 333 667777666 4688999887754332222211111122222 5666666653 2477777655
Q ss_pred C
Q 047837 161 S 161 (882)
Q Consensus 161 ~ 161 (882)
.
T Consensus 194 ~ 194 (308)
T 1zgk_A 194 N 194 (308)
T ss_dssp T
T ss_pred C
Confidence 4
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.76 E-value=3.9 Score=41.07 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=75.0
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec-----CCC----CeEEEEECCCceeeE--E
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES-----GPQ----PAVLVWDCANLAFIS--E 83 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~-----~~d----~~I~vwd~~t~~~~~--~ 83 (882)
.++...|+.+.+||+.+++-.. ...-.......+.+...++++++.|.. +.. ..+.+||..+.+-.. .
T Consensus 6 ~l~~~GG~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 6 LIFMISEEGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEEETTEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEEcCCceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 4555566799999999988643 221100023444455567888888752 111 137889998876422 2
Q ss_pred eeccccceeEEEECCCCCEEEEEc----------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC---
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG----------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK--- 150 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~----------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~--- 150 (882)
+......-.++.+ +++.++.|+ ..+.++|..+.+-...-..+. ......+..-++++++.+|.
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCTT
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--cccceeEEEECCEEEEEeCCCCC
Confidence 2211111122222 555555555 358999988775332212111 12222222346667777664
Q ss_pred ----CcEEEEEcccC
Q 047837 151 ----KHLKFWTIGSS 161 (882)
Q Consensus 151 ----~~i~iwd~~~~ 161 (882)
+.+.+||..+.
T Consensus 161 ~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 161 RKCLNKMCVYDPKKF 175 (315)
T ss_dssp SCBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCC
Confidence 24777776654
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.57 E-value=0.53 Score=47.45 Aligned_cols=165 Identities=8% Similarity=-0.015 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCc-eeEEEeecCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEeCccCccceeeeccceecccCCceE
Q 047837 499 RTIHLYDVKRNF-DLIESIDDHSAAVTAVKFTCNGRKILSCSAD-----RSLVVRDVVETNSAYKISRRHQQLASQGTVY 572 (882)
Q Consensus 499 g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 572 (882)
..+.+||..+.. ..+..+......-..+.+ +++.++.|+.+ ..+.+||+.+.. ....... ......-.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~--p~~r~~~~ 163 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPM--LTRRIGVG 163 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCC--SSCCBSCE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCC--CccccceE
Confidence 458888887641 112112211122222333 66677776643 357888887542 1111110 00011111
Q ss_pred EEEEecCCCEEEEEeCC-----CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC-----CcEEEEEcc
Q 047837 573 DMDIDPTMEVVITVGQD-----KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN-----KSICLYDFI 642 (882)
Q Consensus 573 ~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d-----g~i~iwd~~ 642 (882)
.+.+ ++++++.|+.+ ..+.+||+.+.+-...-...........+.+ ++++++.|+.+ ..+.+||+.
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 2222 66777777654 4689999887643221110111122223333 67777777654 469999998
Q ss_pred CCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCC
Q 047837 643 SGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGD 675 (882)
Q Consensus 643 ~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~d 675 (882)
+.+.... +.........+.+ ++++++.|+.+
T Consensus 240 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 272 (308)
T 1zgk_A 240 TETWTFVAPMKHRRSALGITVH--QGRIYVLGGYD 272 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCcEEECCCCCCCccceEEEEE--CCEEEEEcCcC
Confidence 8754332 1111111122222 56666666644
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.47 E-value=1.7 Score=43.88 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=93.0
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC-----C------CeEEEEeCccCccceeee
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA-----D------RSLVVRDVVETNSAYKIS 559 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d------g~i~vwd~~~~~~~~~~~ 559 (882)
+++.|+ ..+.+||..++.-....+..........+...+++.++.|+. . ..+.+||..+.. ....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEEC
Confidence 566666 579999998763222333222223333333457788888773 1 126777876542 1111
Q ss_pred ccceecccCCce-EEEEEecCCCEEEEEeCC--------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEE
Q 047837 560 RRHQQLASQGTV-YDMDIDPTMEVVITVGQD--------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCS 630 (882)
Q Consensus 560 ~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 630 (882)
.... .... .+++. -++++++.|+.+ ..+.+||..+.+-...-........- +++. .++++++.|
T Consensus 83 ~~~p----~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~G 155 (315)
T 4asc_A 83 PPLP----SPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIG 155 (315)
T ss_dssp CCBS----SCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEEC
T ss_pred CCCC----cchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEe
Confidence 1100 0111 11222 256677777632 36899999876432211100111112 2222 456777777
Q ss_pred eC-C-----CcEEEEEccCCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCC
Q 047837 631 YS-N-----KSICLYDFISGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGDG-----LQRVKEKYGI 686 (882)
Q Consensus 631 ~~-d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~dg-----~i~vwd~~~~ 686 (882)
+. + ..+.+||..+.+.... +......-..+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 65 2 4689999988754322 1111111122222 677888887654 4777887653
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.85 Score=46.10 Aligned_cols=149 Identities=9% Similarity=0.071 Sum_probs=73.7
Q ss_pred cCCCcEEEEEcCCCceeEEEeec----CCCCEEE---EEE-----ccCCCEEEEEeCCCeEEEEeCccCccceeeeccce
Q 047837 496 GRDRTIHLYDVKRNFDLIESIDD----HSAAVTA---VKF-----TCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQ 563 (882)
Q Consensus 496 ~~dg~v~iwd~~~~~~~~~~~~~----h~~~v~~---~~~-----s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 563 (882)
..||.+..++..++.... .+.. ...++.. ... +..+..+++++.+|.+...|+.+++...+......
T Consensus 64 ~~dG~l~a~~~~~G~~~~-~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKL-PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEE-EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEe-eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578888888877652221 1111 1122221 000 01455788999999999999999887776643321
Q ss_pred ecccC-CceEEEE---Ee--cCCCEEEEEeCCCcEEEEEccCCceEEEEEec---cCCCC--c-EEEEECCCCCEEEEEe
Q 047837 564 QLASQ-GTVYDMD---ID--PTMEVVITVGQDKKINSFSIAAGKLIRSFKQA---KDFGD--P-MKVTVDPSGSYLVCSY 631 (882)
Q Consensus 564 ~~~~~-~~v~~~~---~s--p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~--v-~~~~~spdg~~l~~~~ 631 (882)
..... ....|.. +. -.+..++.+..+..+.+.+ ++|+ +..+... ..... + ..-..+.|+.++ .++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~ 219 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APF 219 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEE
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEE-EEC
Confidence 00000 0000111 10 1234666666666666666 4443 2211100 00000 0 000112356664 467
Q ss_pred CCCcEEEEEccCCeEEE
Q 047837 632 SNKSICLYDFISGEMVA 648 (882)
Q Consensus 632 ~dg~i~iwd~~~~~~~~ 648 (882)
.||.|.-+|..+|+.+-
T Consensus 220 ~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 220 RDKSLLASDLDFRIARW 236 (339)
T ss_dssp TTTEEEEECSTTCCEEE
T ss_pred CCCEEEEEECCCCcEEE
Confidence 89999999998888764
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.36 E-value=2.1 Score=51.37 Aligned_cols=191 Identities=8% Similarity=0.106 Sum_probs=114.6
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGT 570 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 570 (882)
.+|.-. ..++.|||+.+. ..+..+.- ...|.--.|- +.+.|+..+. ..|+.|++.....+.+++..+..+. ...
T Consensus 79 iiALra-g~~lQiFnl~~k-~klks~~~-~e~VvfWkWi-s~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~-~~Q 152 (1630)
T 1xi4_A 79 VIALKA-GKTLQIFNIEMK-SKMKAHTM-TDDVTFWKWI-SLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLA-GCQ 152 (1630)
T ss_pred eEEEec-CCeEEEeehHHh-hhhccccc-CCCceEEEec-CCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcc-cCe
Confidence 455443 678999999876 44444442 3345555554 3446666554 4599999976556666666665554 467
Q ss_pred eEEEEEecCCCEEEEEe-------CCCcEEEEEccCCceEEEEEeccCCCCcEEEEEC--C-CCCEEEEEeC---CCcEE
Q 047837 571 VYDMDIDPTMEVVITVG-------QDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVD--P-SGSYLVCSYS---NKSIC 637 (882)
Q Consensus 571 v~~~~~sp~~~~l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--p-dg~~l~~~~~---dg~i~ 637 (882)
|..-..+++.++++..+ -.|.+.+|..+.+ ..+.+. +|...-..+... + ....++.+.. .+.++
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie--gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh 229 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh--HhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence 88888899999887654 2478889988743 233333 444333333321 1 1223222221 26888
Q ss_pred EEEccCC---eE------EEEEcc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 638 LYDFISG---EM------VAKAMG---HGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 638 iwd~~~~---~~------~~~~~~---h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
|-++... .. +..+.. -.+-..+|..++.-..+...+.-|.|.++|+.++..+.
T Consensus 230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 8887432 11 111111 12233467777777788888899999999999887664
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.92 E-value=2.7 Score=41.86 Aligned_cols=160 Identities=10% Similarity=0.006 Sum_probs=90.0
Q ss_pred EEEccCCCEEEEEeCC--------------CeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEe--CC
Q 047837 526 VKFTCNGRKILSCSAD--------------RSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVG--QD 589 (882)
Q Consensus 526 ~~~s~~~~~l~s~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d 589 (882)
--++++|.+|+-+... ..|+..++...+. ..+.. -....|++++++|+-.. .+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~----------~~~~~~s~~g~~Iy~~~~~~~ 126 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDP----------DPCIYASLIGNYIYYLHYDTQ 126 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEEC----------SCEEEEEEETTEEEEEEESSS
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeec----------CCccEEEEeCCEEEEEeecCC
Confidence 3457789988866543 3466666654331 12211 12337788999888776 33
Q ss_pred C--cEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC-CCcEEEEEccCCeEEEEEccCCCCeEEEEECCCC
Q 047837 590 K--KINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS-NKSICLYDFISGEMVAKAMGHGEVITGVTFLPDC 666 (882)
Q Consensus 590 ~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~d~ 666 (882)
+ .|..-++. |.....+. .+.. .+++++++.|.-.+. ..+|++.++..+.....+. +... ..++|++
T Consensus 127 ~~~~Iy~~~~d-Gs~~~~lt--~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g 195 (302)
T 3s25_A 127 TATSLYRIRID-GEEKKKIK--NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDD 195 (302)
T ss_dssp SCEEEEEEETT-SCCCEEEE--SSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEET
T ss_pred CCceEEEEECC-CCCeEEEe--CCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecC
Confidence 3 55556665 44444454 2222 456888988875554 6788888887765443333 2222 3466999
Q ss_pred CEEEEEeCC--CeEEEEeCCCCCCCcccCCCCCcccEEEecCCCeEE
Q 047837 667 KHIVSVGGD--GLQRVKEKYGILPPRNFAQPAALSPIIFCEEEDQKC 711 (882)
Q Consensus 667 ~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 711 (882)
++|+-...+ ..|..-++.+.... .+.. ... ..|++.++.+.
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~-~~~--~~~~~~g~~Iy 238 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPNPV-VLTE-ANI--EHYNVYGSLIF 238 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCCCE-ECSC-SCE--EEEEEETTEEE
T ss_pred CEEEEEEcCCCcEEEEEECCCCCeE-EEeC-CCc--ceEEECCCEEE
Confidence 998876643 35555566554422 2221 111 33666666553
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.79 E-value=3.1 Score=41.89 Aligned_cols=184 Identities=9% Similarity=0.049 Sum_probs=90.3
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeC----CC-------eEEEEeCccCccceeee
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSA----DR-------SLVVRDVVETNSAYKIS 559 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~~~ 559 (882)
+++.|+. .+..||..++.-....+..........+...++..++.|+. ++ .+.+||..+.. ....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEEC
Confidence 5566664 48899998763222222221222223333457778888873 12 16677776432 1111
Q ss_pred ccceecccCCceEEEEEecCCCEEEEEeCC-------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeC
Q 047837 560 RRHQQLASQGTVYDMDIDPTMEVVITVGQD-------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYS 632 (882)
Q Consensus 560 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 632 (882)
... ...... .+++. -++++++.|+.+ ..+.+||..+.+-...-........- +++. .++++++.|+.
T Consensus 94 ~~~--p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 94 PPL--PSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGK 167 (318)
T ss_dssp SCB--SSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCE
T ss_pred CCC--Cccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCC
Confidence 110 000011 12222 256777777754 25888998876533221100111111 2222 46777777753
Q ss_pred ------CCcEEEEEccCCeEEEE--EccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCC
Q 047837 633 ------NKSICLYDFISGEMVAK--AMGHGEVITGVTFLPDCKHIVSVGGDG-----LQRVKEKYGI 686 (882)
Q Consensus 633 ------dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~dg-----~i~vwd~~~~ 686 (882)
-..+.+||..+.+.... +......-..+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 23689999988764332 1111111122222 677777776432 4667887653
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.71 E-value=4.3 Score=43.24 Aligned_cols=109 Identities=7% Similarity=0.069 Sum_probs=58.0
Q ss_pred eEEEEEEecCCCCCccceeccCCceEEEEEcCCCcEEEEEcCCCc-eeEEEeec------CCCCEEEEEEccC---CCEE
Q 047837 466 EILSLSFSLSSKKDDVLEEVTDSHYFLASGGRDRTIHLYDVKRNF-DLIESIDD------HSAAVTAVKFTCN---GRKI 535 (882)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~v~iwd~~~~~-~~~~~~~~------h~~~v~~~~~s~~---~~~l 535 (882)
....++|.|+++ ++++-...+.|++++..++. ..+..+.. .......|+|+|+ +..|
T Consensus 28 ~P~~~a~~pdG~-------------l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 28 KPHALLWGPDNQ-------------IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SEEEEEECTTSC-------------EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CceEEEEcCCCc-------------EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 445777777776 55554444568877754332 12222221 2456789999995 5555
Q ss_pred EEEeC-------------CCeEEEEeCccCcc----ceeeeccceecccCCceEEEEEecCCCEEEEEeC
Q 047837 536 LSCSA-------------DRSLVVRDVVETNS----AYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQ 588 (882)
Q Consensus 536 ~s~~~-------------dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 588 (882)
..... ...|.-++...... ...+..... .........|+|.|||.+.++.+.
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 44332 23455555542211 111111111 111235789999999997776553
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.61 E-value=6.6 Score=39.38 Aligned_cols=143 Identities=10% Similarity=0.016 Sum_probs=75.0
Q ss_pred eEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecC--CCC-------eEEEEECCCceeeEE--
Q 047837 15 KCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESG--PQP-------AVLVWDCANLAFISE-- 83 (882)
Q Consensus 15 ~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~--~d~-------~I~vwd~~t~~~~~~-- 83 (882)
.++...|..+.+||+.+++-.. .........-.+.+...++++++.|... .++ .+.+||..+.+-...
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhhccccceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444555689999999888654 2221101223344456678888888521 111 278899887764322
Q ss_pred eeccccceeEEEECCCCCEEEEEc---------CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECC----
Q 047837 84 LKGHLYGVECIAFSPDGEHLVTVG---------GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGK---- 150 (882)
Q Consensus 84 l~~h~~~V~~lafspdg~~Las~~---------~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~---- 150 (882)
+......-.+..+ +++.++.|+ ..+.++|..+.+-...-..+. ......+..-++++++.+|.
T Consensus 96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESCEEEEETTEEEEECCEESSS
T ss_pred CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cccccEEEEECCEEEEEcCCCCCC
Confidence 2221112222222 566666665 358889988765433222111 11111222246677777652
Q ss_pred ---CcEEEEEcccCc
Q 047837 151 ---KHLKFWTIGSSA 162 (882)
Q Consensus 151 ---~~i~iwd~~~~~ 162 (882)
+.+.+||..+..
T Consensus 172 ~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 172 KCTNRVFIYNPKKGD 186 (318)
T ss_dssp CBCCCEEEEETTTTE
T ss_pred CccceEEEEcCCCCE
Confidence 247777776543
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.58 E-value=7.4 Score=39.82 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=66.2
Q ss_pred CcEEEEEcCCC-ceeEEEeecCCCCEEEEEEccCCCEEEEEeC------CCeEEEEeCccCccceeeeccceecccCCce
Q 047837 499 RTIHLYDVKRN-FDLIESIDDHSAAVTAVKFTCNGRKILSCSA------DRSLVVRDVVETNSAYKISRRHQQLASQGTV 571 (882)
Q Consensus 499 g~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 571 (882)
..+.+||..+. +..+..+......-.+++.. ++++++.|+. ...+.+||+............. .......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~--~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV--SSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS--STTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC--CCCcccc
Confidence 47889998764 22333322111110122222 5666666653 2347777763222222221111 0111111
Q ss_pred EEEEEecCCCEEEEEeCC----------------------CcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEE
Q 047837 572 YDMDIDPTMEVVITVGQD----------------------KKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 572 ~~~~~sp~~~~l~~~~~d----------------------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
...+...++++++.|+.+ ..+.+||+.+.+-...-........-.+ ...++++++.
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~ 322 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLII 322 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEE
Confidence 222333456777777632 2578999886543222111112222222 2346778888
Q ss_pred EeCCC------cEEEEEccCCeEEEE
Q 047837 630 SYSNK------SICLYDFISGEMVAK 649 (882)
Q Consensus 630 ~~~dg------~i~iwd~~~~~~~~~ 649 (882)
|+.++ .|.++++++++.+..
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 87543 466668887766544
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.23 Score=50.29 Aligned_cols=195 Identities=13% Similarity=0.072 Sum_probs=101.5
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecC-CCCEEEEEE--cc-CCCEEEEE-eCCCeEEEEeCccCccceeeeccceec
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDH-SAAVTAVKF--TC-NGRKILSC-SADRSLVVRDVVETNSAYKISRRHQQL 565 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~--s~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~ 565 (882)
+++.++.||.|+-+|..++ +..=.+... ..++....- .+ ++..++.. +.||.|..++..++.......... +
T Consensus 12 ~V~v~t~dG~l~Ald~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~--l 88 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNG-HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ--L 88 (339)
T ss_dssp EEEEEETTSCEEEEETTTT-EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH--H
T ss_pred EEEEEeCCCeEEEEECCCC-cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc--c
Confidence 7889999999999999887 444444332 122221110 01 22333333 589999999987653332222111 1
Q ss_pred ccCCceEE---EEE-e----cCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCC-----cEEEEEC-----CCCCEE
Q 047837 566 ASQGTVYD---MDI-D----PTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGD-----PMKVTVD-----PSGSYL 627 (882)
Q Consensus 566 ~~~~~v~~---~~~-s----p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-----v~~~~~s-----pdg~~l 627 (882)
....++.. ..+ . ..+..+++++.++.+...|+.+|+.+..+........ ..+.... ..+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11112211 000 0 1456788999999999999999999999863221111 0111110 123566
Q ss_pred EEEeCCCcEEEEEccCCeE----EEEEccCCCC--eE-EEEECCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 047837 628 VCSYSNKSICLYDFISGEM----VAKAMGHGEV--IT-GVTFLPDCKHIVSVGGDGLQRVKEKYGILPPR 690 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~--v~-~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~~~ 690 (882)
+.+..+..+.+.+ ++|+. ...+..+... +. .-..+.|+.++ .++.||.|.-.|..++....
T Consensus 169 ~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence 6666666666655 34431 1111111000 00 00012356664 47888999988888777655
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.17 E-value=0.74 Score=49.03 Aligned_cols=120 Identities=20% Similarity=0.197 Sum_probs=79.7
Q ss_pred EEEEEECCC----CceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCcee-------------eEEee
Q 047837 23 VLVVYDVDS----STQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAF-------------ISELK 85 (882)
Q Consensus 23 ~v~vwd~~~----~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~-------------~~~l~ 85 (882)
.|.|.|.+. +.....+..-. .....+.++|||++++++.. .++++.|+|++.... +....
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~p--ksPHGv~vsPDGkyi~v~GK-LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVP--KNPHGCNTSSDGKYFIAAGK-LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEES--SSCCCEEECTTSCEEEEECT-TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CeeEEccccccccCCceEEEEeCC--CCCcceeeCCCCCEEEEcCC-CCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 467778765 33333333333 56777999999999998864 478999999874211 22222
Q ss_pred ccccceeEEEECCCCCEEEEEc--CEEEEEEcCcc----------eeeeeeecCCcccceeEEEE------ccCCCEEEE
Q 047837 86 GHLYGVECIAFSPDGEHLVTVG--GYIYLWNWRSA----------MLVMKLKANSSCSAITSACF------SSDAKFIVT 147 (882)
Q Consensus 86 ~h~~~V~~lafspdg~~Las~~--~~i~iWd~~~g----------~~~~~~~~~~~~~~v~~l~f------s~d~~~l~~ 147 (882)
-.-.-...+|.++|.-..+.- ..|..|++.+. ..+.++..| -.+-.+.- .+||++|++
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~---YqpGH~~~~~get~~~dGk~lv~ 451 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH---YQPGHLHASLCETNEADGKWLVA 451 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS---SCEEEEEETTTTSTTCCSCEEEE
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc---cCCcccccCCCccCCCCccEEEE
Confidence 233457789999993333333 99999999865 567777777 34444544 568999997
Q ss_pred EC
Q 047837 148 AG 149 (882)
Q Consensus 148 ~~ 149 (882)
..
T Consensus 452 ln 453 (638)
T 3sbq_A 452 LS 453 (638)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 345
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=92.64 E-value=10 Score=38.83 Aligned_cols=118 Identities=12% Similarity=0.160 Sum_probs=76.2
Q ss_pred eeceEEEEEECCCC--ceEEEEEecC----CCCCeEEEEEc---CC----CCEEEEeecCCCCeEEEEECCCceeeEEee
Q 047837 19 VAGCVLVVYDVDSS--TQSHLMVSHR----MPKPLCCVAMS---RD----GRYVAAGESGPQPAVLVWDCANLAFISELK 85 (882)
Q Consensus 19 ~~~~~v~vwd~~~~--~~~~~l~~h~----~~~~I~~va~s---pd----g~~la~g~~~~d~~I~vwd~~t~~~~~~l~ 85 (882)
.++..|++||++++ +.++.+.-.. ....+..+++. |+ +.++..... ..+-|.|+|+.+++..+.+.
T Consensus 120 ~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~-~~~gLIVydl~~~~swRv~~ 198 (381)
T 3q6k_A 120 SHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF-LRGALFIYDHKKQDSWNVTH 198 (381)
T ss_dssp CCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET-TTTEEEEEETTTTEEEEEEC
T ss_pred CCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC-CCCcEEEEECCCCcEEEEcc
Confidence 34568999999999 8888775421 11457888887 32 455665543 36789999999999887663
Q ss_pred ccccceeEEEECCCCCEEEEEcCEEEEEEcCcceeeeeeecCCcccceeEEEEccC----CCEEEEECCCcEEEEEcccC
Q 047837 86 GHLYGVECIAFSPDGEHLVTVGGYIYLWNWRSAMLVMKLKANSSCSAITSACFSSD----AKFIVTAGKKHLKFWTIGSS 161 (882)
Q Consensus 86 ~h~~~V~~lafspdg~~Las~~~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d----~~~l~~~~~~~i~iwd~~~~ 161 (882)
.+ |.||.....+..|.-.-| . ..|..|+++|+ ++.|....-..-++|.+.+.
T Consensus 199 ~~--------~~pd~~~~~~i~G~~~~~-------------~---~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~ 254 (381)
T 3q6k_A 199 PT--------FKAERPTKFDYGGKEYEF-------------K---AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTK 254 (381)
T ss_dssp GG--------GSCCSCEEEEETTEEEEE-------------C---CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHH
T ss_pred CC--------CccccCcceEECCEEeEe-------------c---cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHH
Confidence 21 456622233333332211 1 57999999998 77777765545566666544
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.57 E-value=1.6 Score=44.87 Aligned_cols=53 Identities=6% Similarity=-0.142 Sum_probs=26.9
Q ss_pred cEEEEEccCCe--EEEEEccCCCCeEEEEECCCCCEEEEEeCCC------eEEEEeCCCCCCC
Q 047837 635 SICLYDFISGE--MVAKAMGHGEVITGVTFLPDCKHIVSVGGDG------LQRVKEKYGILPP 689 (882)
Q Consensus 635 ~i~iwd~~~~~--~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg------~i~vwd~~~~~~~ 689 (882)
.+.+||+.+.+ .+..+......-.++ .-++++++.||.++ .|.++++.+.+..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 57889988754 333333222222222 34778888888553 3445566665544
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.33 E-value=2.1 Score=45.66 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=71.7
Q ss_pred CceEEEEEecCCCEEEEEe-CCCcEEEEEccCC------ce-------EEEEEeccCCCCcEEEEECCCCCEEEEEeCCC
Q 047837 569 GTVYDMDIDPTMEVVITVG-QDKKINSFSIAAG------KL-------IRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNK 634 (882)
Q Consensus 569 ~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~------~~-------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg 634 (882)
.....+.++|||++++.++ .+.++.++|++.- +. +... .-.-.+...+|.++|.-..+-.-|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~---e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP---ELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC---BCCSCEEEEEECSSSEEEEEETTTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec---cCCCcccEEEECCCCceEeeeeecc
Confidence 3566789999999988776 4679999998742 11 1122 2345678899999995556667899
Q ss_pred cEEEEEccCC----------eEEEEEccCCCCeEEEEE------CCCCCEEEEEe
Q 047837 635 SICLYDFISG----------EMVAKAMGHGEVITGVTF------LPDCKHIVSVG 673 (882)
Q Consensus 635 ~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~------s~d~~~l~s~~ 673 (882)
+|.-|++... ..+..+.-|-.+- .+.- .+||++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 9999999753 4666676664432 3333 57999999875
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.96 E-value=11 Score=42.70 Aligned_cols=150 Identities=10% Similarity=0.102 Sum_probs=79.3
Q ss_pred EEEEEcCC----CcEEEEEcCCCc-eeEE-E-----eecCCCCEEEEEEccCCCEEEEEeCCC------eEEEEeCccCc
Q 047837 491 FLASGGRD----RTIHLYDVKRNF-DLIE-S-----IDDHSAAVTAVKFTCNGRKILSCSADR------SLVVRDVVETN 553 (882)
Q Consensus 491 ~l~~g~~d----g~v~iwd~~~~~-~~~~-~-----~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~vwd~~~~~ 553 (882)
+++.|+.+ ..+.+||..++. ..+. . +......-..+.+..+++.++.|+.++ .+.+||..+..
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~ 479 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE 479 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc
Confidence 66677643 468889987752 2222 1 111111222333322677777776542 47788877532
Q ss_pred cceeeeccceecccCCceEEEEEecCCCEEEEEeCCC--cEEEEEccCCceEEEEE---eccCCCCcEEEEECCC-CCEE
Q 047837 554 SAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDK--KINSFSIAAGKLIRSFK---QAKDFGDPMKVTVDPS-GSYL 627 (882)
Q Consensus 554 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~spd-g~~l 627 (882)
...... ......-.+++...++++++.|+.++ .+.+||..+.+-...-. ..........+.+..+ ++++
T Consensus 480 --W~~~~~---~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 480 --WSMIKS---LSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp --EEECCC---CSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred --EEECCC---CCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 111111 00111112233324788888888655 79999998765322111 0012223344566655 6777
Q ss_pred EEEeC--C-----CcEEEEEccCCe
Q 047837 628 VCSYS--N-----KSICLYDFISGE 645 (882)
Q Consensus 628 ~~~~~--d-----g~i~iwd~~~~~ 645 (882)
+.|+. + ..+.+||+.+.+
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EECCcCCCCCeeeCcEEEEEccCCc
Confidence 77765 2 358899998876
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.63 E-value=4 Score=43.44 Aligned_cols=113 Identities=4% Similarity=0.087 Sum_probs=62.6
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCeEEEEeCccCccceeeeccceec------ccCCceEEEEEecC----CCEEEEEeC-
Q 047837 521 AAVTAVKFTCNGR-KILSCSADRSLVVRDVVETNSAYKISRRHQQL------ASQGTVYDMDIDPT----MEVVITVGQ- 588 (882)
Q Consensus 521 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~----~~~l~~~~~- 588 (882)
.....|+|.|||. .|+++...|.|++++.........+....... ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 55566778999999754221111111111001 11356789999996 443333322
Q ss_pred -C----------CcEEEEEccC----------CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCC
Q 047837 589 -D----------KKINSFSIAA----------GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN 633 (882)
Q Consensus 589 -d----------~~v~iwd~~~----------~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 633 (882)
+ ..|.-|.+.. .+.+..+...........|+|.|||.+.++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455532 1233333322233456889999999877766543
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.46 E-value=17 Score=41.16 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=76.2
Q ss_pred EEEEEECCCCceEEEE-E-----ecCCCCCeEEEEEcCCCCEEEEeecCCC----CeEEEEECCCceeeE--Eeeccccc
Q 047837 23 VLVVYDVDSSTQSHLM-V-----SHRMPKPLCCVAMSRDGRYVAAGESGPQ----PAVLVWDCANLAFIS--ELKGHLYG 90 (882)
Q Consensus 23 ~v~vwd~~~~~~~~~l-~-----~h~~~~~I~~va~spdg~~la~g~~~~d----~~I~vwd~~t~~~~~--~l~~h~~~ 90 (882)
.+.+||+.+++-...- . ....-..-.+++++.++++++.|..+.. ..+.+||..+.+-.. .+......
T Consensus 413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~ 492 (695)
T 2zwa_A 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR 492 (695)
T ss_dssp CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS
T ss_pred cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc
Confidence 5899999988765442 1 0110012333344337888888854322 368999998864322 22211111
Q ss_pred eeEEEECCCCCEEEEEc----CEEEEEEcCcceeeeeee---cCCcccceeEEEEccC-CCEEEEECC--------CcEE
Q 047837 91 VECIAFSPDGEHLVTVG----GYIYLWNWRSAMLVMKLK---ANSSCSAITSACFSSD-AKFIVTAGK--------KHLK 154 (882)
Q Consensus 91 V~~lafspdg~~Las~~----~~i~iWd~~~g~~~~~~~---~~~~~~~v~~l~fs~d-~~~l~~~~~--------~~i~ 154 (882)
.+++.-.+++.++.|| +.+.+||..+.+-...-. .+.....-.++.+..+ +++++.+|. +.+.
T Consensus 493 -h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~ 571 (695)
T 2zwa_A 493 -HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI 571 (695)
T ss_dssp -CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEE
T ss_pred -ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEE
Confidence 2333334888888887 379999998876433221 1111122334555655 666666653 2477
Q ss_pred EEEcccCc
Q 047837 155 FWTIGSSA 162 (882)
Q Consensus 155 iwd~~~~~ 162 (882)
+||+.+..
T Consensus 572 ~yd~~~~~ 579 (695)
T 2zwa_A 572 IFKYDAEN 579 (695)
T ss_dssp EEEECTTC
T ss_pred EEEccCCc
Confidence 77776554
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.05 E-value=11 Score=39.93 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=63.8
Q ss_pred CCeEEEEEcCCCC-EEEEeecCCCCeEEEEECCCc---eeeEEee---------ccccceeEEEECCC----CCEEEEEc
Q 047837 45 KPLCCVAMSRDGR-YVAAGESGPQPAVLVWDCANL---AFISELK---------GHLYGVECIAFSPD----GEHLVTVG 107 (882)
Q Consensus 45 ~~I~~va~spdg~-~la~g~~~~d~~I~vwd~~t~---~~~~~l~---------~h~~~V~~lafspd----g~~Las~~ 107 (882)
..-..|+|.|||+ .|.+++. .|.|++++.... +.+..+. +.+.....|+|+|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er--~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEK--EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEET--TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeC--CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 4578999999996 3444444 679999975432 1222222 12467889999996 44444432
Q ss_pred ----C----------EEEEEEcCc----------ceeeeeeecCCcccceeEEEEccCCCEEEEECCC
Q 047837 108 ----G----------YIYLWNWRS----------AMLVMKLKANSSCSAITSACFSSDAKFIVTAGKK 151 (882)
Q Consensus 108 ----~----------~i~iWd~~~----------g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~ 151 (882)
+ .|.-|.+.. .+.+..+........-..|+|.|||.+.++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 455565532 2333343321112456789999999999988874
No 352
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.53 E-value=31 Score=33.52 Aligned_cols=188 Identities=7% Similarity=0.017 Sum_probs=107.8
Q ss_pred EEEEEcCCCcEEEEE---cCCCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEeCccCccceeeeccceecc
Q 047837 491 FLASGGRDRTIHLYD---VKRNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLA 566 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd---~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 566 (882)
.|+.-+..|.++--. +......- .+ .....|..+.... +..+++..+.+|.++-..+..-. ...-......+.
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk 113 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT 113 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC
Confidence 455555667666433 32221111 12 2356677665422 56799999999999998876432 111000011122
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCcEEEEEccC---------CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 047837 567 SQGTVYDMDIDPTMEVVITVGQDKKINSFSIAA---------GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSIC 637 (882)
Q Consensus 567 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~ 637 (882)
..+.+..+........++..+..|.+..++... |.....+ .....|..+...+++.+++..+..|.++
T Consensus 114 egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L---~~~d~vv~~~~~~~~~~ll~~T~~G~~k 190 (276)
T 3no0_A 114 EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL---EKNDETSGLRIWNGEPYLLVITAKGRVK 190 (276)
T ss_dssp TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC---CTTCCEEEEEEESSCSEEEEEETTSCEE
T ss_pred CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc---CCCCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 335666666666667888889999988887642 1111122 2345677766666677888889999999
Q ss_pred EEEccCC-------eEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEE--EeCCC
Q 047837 638 LYDFISG-------EMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRV--KEKYG 685 (882)
Q Consensus 638 iwd~~~~-------~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~v--wd~~~ 685 (882)
...+..- +-+..+ ...+.+..+....+...++..+.+|.+.. +++.+
T Consensus 191 r~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 191 KISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 8887532 222223 23345555444334445666677777766 76654
No 353
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=81.57 E-value=2.5 Score=45.55 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=44.2
Q ss_pred CCCccccCCCCCeEEEeec--------------eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeec
Q 047837 3 PNHNIKKPDSSSKCAYVAG--------------CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGES 64 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~--------------~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~ 64 (882)
|+.++|.++|. |.+..+ +.|..++..+++...++.+... .+++.++||||+++|.+.-.
T Consensus 478 PDnL~fd~~G~--LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~-aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 478 PDGLGFDKAGR--LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCC--EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEEEE
T ss_pred CCceEECCCCC--EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC-ccccCCEECCCCCEEEEEEe
Confidence 56788888875 444232 2688889988998877765432 57999999999999888743
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.71 E-value=61 Score=33.06 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCeEEEeec---eEEEEEECCCCceEEEEEecCC----------------CCCeEEEEEcCC----CCEEEEeecCCCCe
Q 047837 13 SSKCAYVAG---CVLVVYDVDSSTQSHLMVSHRM----------------PKPLCCVAMSRD----GRYVAAGESGPQPA 69 (882)
Q Consensus 13 ~~~~~~~~~---~~v~vwd~~~~~~~~~l~~h~~----------------~~~I~~va~spd----g~~la~g~~~~d~~ 69 (882)
.+.++|.++ ..|+|||+.+++..+.+..+-. ...|..||+||+ +++|.......
T Consensus 169 ~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss--- 245 (381)
T 3q6k_A 169 SETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA--- 245 (381)
T ss_dssp CSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC---
T ss_pred CccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC---
Confidence 357888875 5899999999998877621111 137889999998 78888775421
Q ss_pred EEEEECCC--------ceeeEEeeccc---cceeEEEEC-CCCCEEEEEc--CEEEEEEcCc-c---eeeeeeecCCccc
Q 047837 70 VLVWDCAN--------LAFISELKGHL---YGVECIAFS-PDGEHLVTVG--GYIYLWNWRS-A---MLVMKLKANSSCS 131 (882)
Q Consensus 70 I~vwd~~t--------~~~~~~l~~h~---~~V~~lafs-pdg~~Las~~--~~i~iWd~~~-g---~~~~~~~~~~~~~ 131 (882)
-.+|.+.| ...+..+ |.+ ..-..+++. .+|.+.++-- ..|..|+..+ . +-...+.......
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~ 324 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFV 324 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCC
T ss_pred CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCcc
Confidence 23444322 1112222 222 223456775 5665444443 8999999876 1 1122222222235
Q ss_pred ceeEEEEccCCCEEEEEC
Q 047837 132 AITSACFSSDAKFIVTAG 149 (882)
Q Consensus 132 ~v~~l~fs~d~~~l~~~~ 149 (882)
.+..+++.++|.+.+.+.
T Consensus 325 ~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 325 FGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp SEEEEEECTTSCEEEEEC
T ss_pred ccCeEEECCCCeEEEEEC
Confidence 677788777776555543
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.18 E-value=62 Score=32.29 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=95.0
Q ss_pred CCCEEEEEEcc---CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 520 SAAVTAVKFTC---NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 520 ~~~v~~~~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
...|..+..-+ +..+++..+.+|.++--.+..-....+.......+...+.+..+........|+..+..|.+..+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 34565554433 578999999999999988764322111000001112235666666666667888889999888887
Q ss_pred cc--C---------CceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe-------EEEEEc--cCCCC
Q 047837 597 IA--A---------GKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE-------MVAKAM--GHGEV 656 (882)
Q Consensus 597 ~~--~---------~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~-------~~~~~~--~h~~~ 656 (882)
.. . |.....+ .....|.++...+++.+|+..+..|.++.-.+.... -+..+. .-.+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L---~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRF---NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCC---CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred CcccccCcCCcCCCCeeeecC---CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 66 2 1111112 234567777777777789999999999888765322 122121 11234
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 657 ITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 657 v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
+..+....+...++..+.+|.+.-++..+
T Consensus 251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 251 LVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 44444444444555566666666666543
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.45 E-value=16 Score=43.02 Aligned_cols=38 Identities=5% Similarity=0.122 Sum_probs=32.8
Q ss_pred eeeEEEecCCCEEEEEecCCeEEeeecccceecccccc
Q 047837 244 KNGFALSASSKLIACACSNGAVHLFDIQSLKHAGTLHY 281 (882)
Q Consensus 244 ~~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 281 (882)
+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 35677788889999999999999999999999887654
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.39 E-value=67 Score=31.80 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=73.0
Q ss_pred CCEEEEEEcc---CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 047837 521 AAVTAVKFTC---NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSI 597 (882)
Q Consensus 521 ~~v~~~~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~ 597 (882)
..|..+..-+ +..+|+..+..|.++...+..-......-.....+...+.+..+....+...++..+.+|.+..+..
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~ 179 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNS 179 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEH
Confidence 3455443332 4678888999999998887543211100000111222456666666655677888899999998887
Q ss_pred cCC----c---eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 598 AAG----K---LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 598 ~~~----~---~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
..- + =++.+.. .....+..+..-.++..|++.+..|..+..++..
T Consensus 180 ~ev~~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 180 RDVRLTNRGTQGVCGMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp GGSCBCCTTBCCEECCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred HHccccCCCCCCeEeEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 541 1 1122221 2345666766655667788888999999888854
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=72.46 E-value=6 Score=43.26 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCccccCCCCCeEEEeec--------------eEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEee
Q 047837 3 PNHNIKKPDSSSKCAYVAG--------------CVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGE 63 (882)
Q Consensus 3 ~~~~~~~pd~~~~~~~~~~--------------~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~ 63 (882)
|..++|.|+|. |..+.+ +.+.+.+..+++..+++.+... .+++.++|+||++.|.+.-
T Consensus 478 PDNL~fd~~G~--LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGR--LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCC--EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCC--EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC-ccCcCeeECCCCCEEEEEE
Confidence 56688888875 444433 3578889999999999988765 7999999999999887753
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=71.16 E-value=79 Score=30.72 Aligned_cols=170 Identities=8% Similarity=-0.062 Sum_probs=87.9
Q ss_pred CCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEe
Q 047837 498 DRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDID 577 (882)
Q Consensus 498 dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 577 (882)
||.|+.|-.....++-. -..-...|..|+...+ ..+... ||.|+.|-.......-... .....|..++..
T Consensus 80 ~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~------~~~~~i~~i~~G 149 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA------EAQSGVTALDGG 149 (282)
T ss_dssp TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG------GGGSSEEEEEEC
T ss_pred CCEEEEeeCCCCCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc------cCCCCeEEEEcc
Confidence 78888887654222110 1111346777776533 333344 8999999876443322111 112356666554
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEccCCCCe
Q 047837 578 PTMEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAMGHGEVI 657 (882)
Q Consensus 578 p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 657 (882)
.+. .+.-. ||.|..|-......+.. . ......|..++...+- .++. .||.|+.|=....-.+..-......|
T Consensus 150 ~~~--~~~l~-~G~v~~wG~n~~gqlg~-p-~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v 221 (282)
T 3qhy_B 150 VYT--ALAVK-NGGVIAWGDNYFGQTTV-P-AEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGV 221 (282)
T ss_dssp SSE--EEEEE-TTEEEEEECCTTSTTSC-C-GGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSC
T ss_pred cCE--EEEEE-CCEEEEecCCCCCCCCC-c-eecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCc
Confidence 332 22233 78899887654221111 0 0123456666665432 2333 58899999765421111111122467
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q 047837 658 TGVTFLPDCKHIVSVGGDGLQRVKEKYGILP 688 (882)
Q Consensus 658 ~~l~~s~d~~~l~s~~~dg~i~vwd~~~~~~ 688 (882)
..++-..+. .++.. ||.|..|-.....+
T Consensus 222 ~~i~~G~~h-~~al~--~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 222 SAIASGEWY-SLALK--NGKVIAWGSSRTAP 249 (282)
T ss_dssp CEEEECSSC-EEEEE--TTEEEEESTTCCCC
T ss_pred eEEEcCCCE-EEEEE--CCEEEEecCCCCcc
Confidence 777765443 33333 89999998765443
No 360
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=70.48 E-value=86 Score=30.91 Aligned_cols=165 Identities=13% Similarity=0.150 Sum_probs=90.0
Q ss_pred CCCEEEEEEc---cCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 520 SAAVTAVKFT---CNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 520 ~~~v~~~~~s---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
...|.++..- .++.+++..+..|.++-..+..-....+.......+...+.+..+....+...++..+.+|.+..++
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 3456555432 3566899999999999987753221111000000111224555555555566788888999888887
Q ss_pred ccCCc-------eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccCCe---------EEEEEccCCCCeEEE
Q 047837 597 IAAGK-------LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFISGE---------MVAKAMGHGEVITGV 660 (882)
Q Consensus 597 ~~~~~-------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l 660 (882)
...-. -++.+. -.....|..+..-.++..|++.+..|.++-.++.... ....+..-.+.+..+
T Consensus 174 ~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~ 252 (307)
T 1zi0_A 174 ESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 252 (307)
T ss_dssp GGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEE
T ss_pred HHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEE
Confidence 64311 111111 1234567777655566778888899988888774321 111122222445444
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 661 TFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 661 ~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
....+...|+..+.+|.+.-..+.+
T Consensus 253 ~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 253 VQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEeCCCceEEEEcCCCcEEEEeccc
Confidence 4433344455566666665555544
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.05 E-value=2e+02 Score=33.78 Aligned_cols=38 Identities=11% Similarity=-0.003 Sum_probs=30.3
Q ss_pred CcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeecc
Q 047837 372 SVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDV 410 (882)
Q Consensus 372 ~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 410 (882)
.+.+++.. ++..++++-+.|+++|+|++.+++.+....
T Consensus 237 ~~~~~~~~-~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEE-TTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeec-CCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 44555655 577789999999999999999998876643
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=66.24 E-value=99 Score=29.99 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=63.8
Q ss_pred eceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeeccccceeEEEECCC
Q 047837 20 AGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLYGVECIAFSPD 99 (882)
Q Consensus 20 ~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~~V~~lafspd 99 (882)
.++.|..|-....-++-.-.... ..|..|+...+- .+|. . |+.|+.|-....-++..-..-...|..++...+
T Consensus 40 ~~G~v~~wG~n~~Gqlg~p~~~~--~~i~~ia~G~~h-s~~l--~--~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~ 112 (282)
T 3qhy_B 40 KGGKVLGWGANLNGQLTMPAATQ--SGVDAIAAGNYH-SLAL--K--DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW 112 (282)
T ss_dssp ETTEEEEEECCSSSTTSCCGGGG--SCCCEEEECSSE-EEEE--E--TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT
T ss_pred ECCEEEEEeCCCCCCCCCCccCC--CCEEEEEeCCCE-EEEE--E--CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC
Confidence 36667777655433322111111 356666665432 2333 2 567888876543222211111345777777666
Q ss_pred CCEEEEEcCEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcc
Q 047837 100 GEHLVTVGGYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 100 g~~Las~~~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~ 159 (882)
-...++ +|.|+.|-....-.+.. ... ....|..++...+...+++ ++.|..|-..
T Consensus 113 hs~al~-~G~v~~wG~n~~gqlg~-~~~-~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n 167 (282)
T 3qhy_B 113 ASYALK-DGKVIAWGDDSDGQTTV-PAE-AQSGVTALDGGVYTALAVK--NGGVIAWGDN 167 (282)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTSC-CGG-GGSSEEEEEECSSEEEEEE--TTEEEEEECC
T ss_pred EEEEEe-CCeEEEecCCCCCcCCC-Ccc-CCCCeEEEEcccCEEEEEE--CCEEEEecCC
Confidence 666666 78888886543221111 111 1145666665544333333 5777777654
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=64.65 E-value=19 Score=39.36 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCEEEEeecC----------CCCeEEEEECCCceeeEEeeccc-cceeEEEECCCCCEEEEE
Q 047837 47 LCCVAMSRDGRYVAAGESG----------PQPAVLVWDCANLAFISELKGHL-YGVECIAFSPDGEHLVTV 106 (882)
Q Consensus 47 I~~va~spdg~~la~g~~~----------~d~~I~vwd~~t~~~~~~l~~h~-~~V~~lafspdg~~Las~ 106 (882)
.-.|+|+|+|++++.-..+ .+..+.+.+..+++..+.+.++. .+++.++|+||+++|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4679999999966554211 12357777888898888888754 679999999999988664
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.91 E-value=29 Score=37.40 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=44.6
Q ss_pred ceeEEEECCCCCEEEEEc-C-------------EEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEE
Q 047837 90 GVECIAFSPDGEHLVTVG-G-------------YIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTA 148 (882)
Q Consensus 90 ~V~~lafspdg~~Las~~-~-------------~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 148 (882)
....|+|.++|.+.+..+ + .|..++..+|++...+..+. ...++.++|+||++.|.++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-CccccCCEECCCCCEEEEE
Confidence 456899999999888655 2 67778887888766665432 2679999999999988765
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=61.31 E-value=1.3e+02 Score=29.68 Aligned_cols=190 Identities=9% Similarity=0.091 Sum_probs=112.4
Q ss_pred EEEEEcCCCcEEEEEcCCCce------eEE--EeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeec--
Q 047837 491 FLASGGRDRTIHLYDVKRNFD------LIE--SIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISR-- 560 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~------~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-- 560 (882)
++++.+.+|.|+-..+..-.. -.. .+. -.+.+..+........++..+..|.++-.....-....+...
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~ 88 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ 88 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc
Confidence 788888999998887653100 111 112 224455555555566788888888877766542111100000
Q ss_pred ---cceecccCCceEEEEEec---CCCEEEEEeCCCcEEEEEccCC-------ceEEEEEeccCCCCcEEEEECCCCCEE
Q 047837 561 ---RHQQLASQGTVYDMDIDP---TMEVVITVGQDKKINSFSIAAG-------KLIRSFKQAKDFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 561 ---~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~spdg~~l 627 (882)
....+.....|..+...+ +..+++..+..|.++.-.+..- .....+. ..+.+..+....+...+
T Consensus 89 ~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~---~~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 89 NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN---DKDFVTSAEIVFKDEKV 165 (312)
T ss_dssp BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC---TTCCEEEEEEECTTCEE
T ss_pred ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC---CCCEEEEEEEeCCCCEE
Confidence 001122234555554433 4667888899999988887432 2222222 34566666665556678
Q ss_pred EEEeCCCcEEEEEccC---------CeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 628 VCSYSNKSICLYDFIS---------GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
+..+.+|.+..+.... |.....+. ....|.++..-.++..|++.+..|..+..++..
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 8888999998888753 22222233 245667776666677788899999999888864
No 366
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=60.27 E-value=1.5e+02 Score=30.07 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=68.6
Q ss_pred CCCEEEEEEcc---CCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 520 SAAVTAVKFTC---NGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 520 ~~~v~~~~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
...|.++..-. ++.+|+.++..|.++...+..-............+...+.+-.+........++..+.+|.+..++
T Consensus 98 ~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 98 GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFG 177 (370)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEE
Confidence 34555554432 456999999999999988753322110000000112234555555555566788888889888887
Q ss_pred ccCCce-------EEEEEeccCCCCcEEEEECC-----------------------------------CCCEEEEEeCCC
Q 047837 597 IAAGKL-------IRSFKQAKDFGDPMKVTVDP-----------------------------------SGSYLVCSYSNK 634 (882)
Q Consensus 597 ~~~~~~-------~~~~~~~~~~~~v~~~~~sp-----------------------------------dg~~l~~~~~dg 634 (882)
...-.. ++-+.. .....|.++...+ ++.++++.+..|
T Consensus 178 ~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G 256 (370)
T 3l6v_A 178 ESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENG 256 (370)
T ss_dssp GGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC-----------------------------------CEEEEEETTS
T ss_pred ccccCccCCCCCCeeeEEe-CCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCC
Confidence 643111 111110 2234455554433 456788888899
Q ss_pred cEEEEEccC
Q 047837 635 SICLYDFIS 643 (882)
Q Consensus 635 ~i~iwd~~~ 643 (882)
..+...+..
T Consensus 257 ~gKrt~~~e 265 (370)
T 3l6v_A 257 YGKRTPLAE 265 (370)
T ss_dssp EEEEEEGGG
T ss_pred CEEEEEHHH
Confidence 888887754
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.95 E-value=1.1e+02 Score=37.05 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=30.3
Q ss_pred CcceeeeccCCCcEEEEeeCCCcEEEEecCCCceeeeccc
Q 047837 372 SVSCVARGCTGGVSFSTCSADGTIRLWDLALQSELSKDVL 411 (882)
Q Consensus 372 ~v~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 411 (882)
.+.+++.. ++..++++-+.|+++|+|++.+++.+.....
T Consensus 239 ~~vs~~~~-~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEE-TTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeecc-CCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 34445554 5778899999999999999999988776543
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.77 E-value=1.7e+02 Score=29.15 Aligned_cols=190 Identities=5% Similarity=0.014 Sum_probs=108.4
Q ss_pred EEEEEcCCCcEEEEEcCCC------ceeEEEee-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEeC---ccCc---ccee
Q 047837 491 FLASGGRDRTIHLYDVKRN------FDLIESID-DHSAAVTAVKFTCNGRKILSCSADRSLVVRDV---VETN---SAYK 557 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~------~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~---~~~~---~~~~ 557 (882)
.+++-+.+|.|+--.+.+- ..-...+. ...+.+..+........|+.-+..|.++-... .... ....
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~ 84 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQH 84 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEE
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEE
Confidence 6777788888886654320 00011111 12344555555555556666666776555443 2211 0000
Q ss_pred eeccceecccCCceEEEEEec---CCCEEEEEeCCCcEEEEEccCCc-------eEEEEEeccCCCCcEEEEECCCCCEE
Q 047837 558 ISRRHQQLASQGTVYDMDIDP---TMEVVITVGQDKKINSFSIAAGK-------LIRSFKQAKDFGDPMKVTVDPSGSYL 627 (882)
Q Consensus 558 ~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~spdg~~l 627 (882)
+.. ...+.....|..+..-+ +..+++..+.+|.++--.+..-. ....+. ....+..+........|
T Consensus 85 i~~-~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk---e~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 85 VAN-LLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR---DNDELVGAVLCSAGDDL 160 (327)
T ss_dssp HHH-HTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC---TTCCEEEEEEECTTCEE
T ss_pred HHH-ccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC---CCCEEEEEEEecCCCEE
Confidence 000 01122234555554433 57799999999999998876422 112222 34556666655566778
Q ss_pred EEEeCCCcEEEEEcc--C---------CeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 628 VCSYSNKSICLYDFI--S---------GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 628 ~~~~~dg~i~iwd~~--~---------~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
+..+..|.+..+... . |...-.+. ....|.++...+++.+|+.++..|.++.-.+..
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 888889988888766 2 22111222 345677777777777999999999999887754
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=54.97 E-value=1.5e+02 Score=28.51 Aligned_cols=157 Identities=8% Similarity=0.033 Sum_probs=93.5
Q ss_pred CCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEec--CCCEEEEEeCCCcEEEEEcc
Q 047837 521 AAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDP--TMEVVITVGQDKKINSFSIA 598 (882)
Q Consensus 521 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~ 598 (882)
+.+..+.......+|+.-+..|.++--.+..-....... . +.....|..+.. + +..+++..+.+|.++-..+.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~---l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS---L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC---C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc---c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHH
Confidence 344444444444456666666765543332100000000 1 223346666644 4 46789999999999999876
Q ss_pred CCc------eEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC---------CeEEEEEccCCCCeEEEEEC
Q 047837 599 AGK------LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS---------GEMVAKAMGHGEVITGVTFL 663 (882)
Q Consensus 599 ~~~------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~s 663 (882)
.-. ....++ ....+..+........|+..+..|.+..++... |.....+. ....|..+...
T Consensus 99 ~~~~~~~G~~~i~lk---egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~ 174 (276)
T 3no0_A 99 EFEYKAQGMPIIKLT---EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIW 174 (276)
T ss_dssp GTTTCSTTEECSCCC---TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEE
T ss_pred HhhhhcCCeEEEecC---CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEe
Confidence 532 112222 345666666666667888888999988887642 22222232 23567776666
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC
Q 047837 664 PDCKHIVSVGGDGLQRVKEKYGI 686 (882)
Q Consensus 664 ~d~~~l~s~~~dg~i~vwd~~~~ 686 (882)
+++.+|+..+..|.++...+.+.
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGGS
T ss_pred CCCCEEEEEeCCCcEEEeEHHHc
Confidence 66778999999999998887653
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.17 E-value=1.4e+02 Score=36.00 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=32.6
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEEccCCeEEEEEc
Q 047837 614 DPMKVTVDPSGSYLVCSYSNKSICLYDFISGEMVAKAM 651 (882)
Q Consensus 614 ~v~~~~~spdg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 651 (882)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777888999999999999999999999988753
No 371
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=47.94 E-value=2.2e+02 Score=28.22 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=87.4
Q ss_pred CCEEEEEEcc---CCCEEEEEeCCCeEEEEeCccCcccee-eeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 047837 521 AAVTAVKFTC---NGRKILSCSADRSLVVRDVVETNSAYK-ISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFS 596 (882)
Q Consensus 521 ~~v~~~~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 596 (882)
..|.++..-+ ++.+++.++.+|.++-..+..-....+ .......+...+.+..+........++..+.+|.+..+.
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~ 171 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFD 171 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 3455543323 266899999999999988753222110 000000111224555555555566788888999988888
Q ss_pred ccCCc-------eEEEEEeccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEEccCC-------eEEEEEc---cCCCCeE
Q 047837 597 IAAGK-------LIRSFKQAKDFGDPMKVTVDPSGS-YLVCSYSNKSICLYDFISG-------EMVAKAM---GHGEVIT 658 (882)
Q Consensus 597 ~~~~~-------~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~i~iwd~~~~-------~~~~~~~---~h~~~v~ 658 (882)
...-. -++.+.. .....|.++..-+++. .|++.+..|..+..++..- +-+..+. .....+.
T Consensus 172 ~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~ 250 (323)
T 1wp5_A 172 ESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRIS 250 (323)
T ss_dssp GGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEE
T ss_pred HHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEE
Confidence 74311 1121211 2345566665444444 7888888888888777541 2122221 1122444
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 659 GVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 659 ~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
.+....++..++..+..|.+.-..+.+
T Consensus 251 ~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 251 GFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 333333334455566666665555544
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.59 E-value=85 Score=34.97 Aligned_cols=37 Identities=16% Similarity=0.426 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeec
Q 047837 46 PLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKG 86 (882)
Q Consensus 46 ~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~ 86 (882)
.|.|+.+ +..+|++-+. |.++++||+.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~--Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQ--NCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEET--TCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEc--CCeEEEEEcCCCceEEeecc
Confidence 3665554 4678888876 88999999999999887543
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=44.11 E-value=2.4e+02 Score=27.63 Aligned_cols=189 Identities=8% Similarity=0.042 Sum_probs=104.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeE---------EEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeeecc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLI---------ESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKISRR 561 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~---------~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 561 (882)
++++.+.+|.|+--.+.+- ... ..+. -.+.+..+........|+..+..|.++-+....-.........
T Consensus 5 ~~v~~T~~G~iKr~~~~~~-~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEY-EAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEETTSEEEEEECC----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred EEEEEeCCCEEEEeeHHHh-hhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 6778888898887765431 110 0112 2234444444445567777777787665554321111100000
Q ss_pred -----ceecccCCceEEEEEe---cCCCEEEEEeCCCcEEEEEccCCc-------eEEEEEeccCCCCcEEEEECCCCCE
Q 047837 562 -----HQQLASQGTVYDMDID---PTMEVVITVGQDKKINSFSIAAGK-------LIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 562 -----~~~~~~~~~v~~~~~s---p~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
...+.....|..+..- .++.+++..+.+|.++--.+..-. ....+. .+ +.+..+....+...
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~--~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 83 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV--DG-DELIGVDLTSGEDE 159 (307)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCC--TT-CCEEEEEEECTTCE
T ss_pred eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEEC--CC-CEEEEEEEeCCCCE
Confidence 0112233456555442 356688889999999988775321 112222 22 56666655555567
Q ss_pred EEEEeCCCcEEEEEccC---------CeEEEEEccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 047837 627 LVCSYSNKSICLYDFIS---------GEMVAKAMGHGEVITGVTFLPDCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~i~vwd~~~ 685 (882)
++..+.+|.+..++... |...-.+. ....|.++....++..|++.+..|.++-.++..
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 77778889888887743 11111222 345677776555667788889999988887744
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=43.82 E-value=2.5e+02 Score=27.76 Aligned_cols=192 Identities=9% Similarity=0.007 Sum_probs=106.1
Q ss_pred EEEEEcCCCcEEEEEcCCC---ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccceeee-----ccc
Q 047837 491 FLASGGRDRTIHLYDVKRN---FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSAYKIS-----RRH 562 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~ 562 (882)
++++.+.+|.|+--.+..- ......+. -.+.+..+........|+..+..|.++-+....-....+.. ...
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~ 85 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANI 85 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGT
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhc
Confidence 6788888998887765421 00011122 23445555555556677777778876655543211110000 000
Q ss_pred eecccCCceEEEEEecC---CCEEEEEeCCCcEEEEEccCCc------eEEEEEeccCCCCcEEEEECCCCCEEEEEeCC
Q 047837 563 QQLASQGTVYDMDIDPT---MEVVITVGQDKKINSFSIAAGK------LIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSN 633 (882)
Q Consensus 563 ~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 633 (882)
..+.....|..+..-++ +.+++.++.+|.++--.+..-. -+..+.. ...+.+..+........|+..+.+
T Consensus 86 i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l-~e~d~lv~~~~~~~~~~i~l~T~~ 164 (323)
T 1wp5_A 86 IPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDVHLTDGMNELFLVTHN 164 (323)
T ss_dssp SCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEEEEECSCSEEEEEETT
T ss_pred cCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEe-CCCCEEEEEEEeCCCCEEEEEeCC
Confidence 11223345555433332 5688899999999998875221 1211211 123566666555556677788889
Q ss_pred CcEEEEEccC---------CeEEEEEccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCC
Q 047837 634 KSICLYDFIS---------GEMVAKAMGHGEVITGVTFLPDCK-HIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 634 g~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~i~vwd~~~ 685 (882)
|.+..++... |.....+. ....|.++..-+++. .|++.+..|..+.-++..
T Consensus 165 G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 165 GYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp SEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 9888888743 11111222 234566665444455 788888899888877754
No 375
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=43.09 E-value=2.2e+02 Score=26.96 Aligned_cols=146 Identities=5% Similarity=-0.017 Sum_probs=81.6
Q ss_pred EEEEEeCCCeEEEEeCccCccceeeeccceecccCCceEEEEEecCCCEEEEEeCCCcEEEEEcc---C----CceEEEE
Q 047837 534 KILSCSADRSLVVRDVVETNSAYKISRRHQQLASQGTVYDMDIDPTMEVVITVGQDKKINSFSIA---A----GKLIRSF 606 (882)
Q Consensus 534 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~---~----~~~~~~~ 606 (882)
.+++.+.+|.|+--....... ....+...+.+..+........|+..+..|.++-+... . |..+..+
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~ 77 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDA------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK 77 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCS------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGT
T ss_pred EEEEEeCCCEEEEeeCCcCCc------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeee
Confidence 455667777776554332110 00011222455555444455566666788876655542 2 2211111
Q ss_pred EeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC-------CeEEEEEccCCCCeEEEEEC-CCCCEEEEEeCCCeE
Q 047837 607 KQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS-------GEMVAKAMGHGEVITGVTFL-PDCKHIVSVGGDGLQ 678 (882)
Q Consensus 607 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~s-~d~~~l~s~~~dg~i 678 (882)
-.-.....|..+....++.+|+.++..|.++...+.. |.....+.. .+.+..+... .++..|+..+.+|.+
T Consensus 78 i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 78 LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp CCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEE
T ss_pred ecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeE
Confidence 1012345677775435677888889999999988743 333333432 3455555555 345678888889988
Q ss_pred EEEeCCCC
Q 047837 679 RVKEKYGI 686 (882)
Q Consensus 679 ~vwd~~~~ 686 (882)
..+.+.+.
T Consensus 157 lrf~~~ei 164 (256)
T 1zvt_A 157 LMFPVSDL 164 (256)
T ss_dssp EEEEGGGS
T ss_pred EEEEHHHC
Confidence 88888653
No 376
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=39.42 E-value=3.2e+02 Score=27.71 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCcEEEEEcC--CCceeEEEeecCCCCEEEEEEcc-CCCEEEEEeCCC--eEEEEeCccCccceeeecc
Q 047837 487 DSHYFLASGGRDRTIHLYDVK--RNFDLIESIDDHSAAVTAVKFTC-NGRKILSCSADR--SLVVRDVVETNSAYKISRR 561 (882)
Q Consensus 487 ~~~~~l~~g~~dg~v~iwd~~--~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~ 561 (882)
+....|..|...|.+++-+-. ..+.... .......|.+|++.| +...|..++..| .-.||....+....+....
T Consensus 20 d~~g~l~vgt~~Gl~~~~~~~~g~~W~~~~-~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~ 98 (394)
T 3b7f_A 20 SGPVMLLVATIKGAWFLASDPARRTWELRG-PVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATR 98 (394)
T ss_dssp CSCCEEEEEETTEEEEEEECTTSCSEEEEE-EESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSB
T ss_pred CCCCEEEEEecCceEEEECCCCCCCceECC-ccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCc
Q ss_pred ceecc---------cCCceEEEEEec-C-CCEEEEEeCCCcEEEEEccCCceEEEEEe-----------------ccCCC
Q 047837 562 HQQLA---------SQGTVYDMDIDP-T-MEVVITVGQDKKINSFSIAAGKLIRSFKQ-----------------AKDFG 613 (882)
Q Consensus 562 ~~~~~---------~~~~v~~~~~sp-~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------------~~~~~ 613 (882)
..... ....|.++++.| + ...|.++...+.|...+-. |+.-..+.. .....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCC
Q ss_pred CcEEEEECC-CCCEEEEEeCCCcEEEEEccCCeEEEEEccC------------CCCeEEEEECCC-CCEEEEEeCCCeEE
Q 047837 614 DPMKVTVDP-SGSYLVCSYSNKSICLYDFISGEMVAKAMGH------------GEVITGVTFLPD-CKHIVSVGGDGLQR 679 (882)
Q Consensus 614 ~v~~~~~sp-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~l~~s~d-~~~l~s~~~dg~i~ 679 (882)
.+.+|.++| +...|..+..++.|...+-..........+- ...+..|.+.|+ ...|..+...+..+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~ 257 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYR 257 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEE
Q ss_pred EEe
Q 047837 680 VKE 682 (882)
Q Consensus 680 vwd 682 (882)
.-|
T Consensus 258 s~D 260 (394)
T 3b7f_A 258 MDR 260 (394)
T ss_dssp EET
T ss_pred eCC
No 377
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=33.65 E-value=1.2e+02 Score=34.09 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=59.0
Q ss_pred ceEEEEEECCCC-------ceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCce-eeEE-eecc-ccc
Q 047837 21 GCVLVVYDVDSS-------TQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLA-FISE-LKGH-LYG 90 (882)
Q Consensus 21 ~~~v~vwd~~~~-------~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~-~~~~-l~~h-~~~ 90 (882)
.+.|.+.|+.+. .....+..+.....+..+++..+ .++++...+....|.++|+.+++ .+.. +.-. .+.
T Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~ 397 (711)
T 4hvt_A 319 AGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNA 397 (711)
T ss_dssp TTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTC
T ss_pred CCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeE
Confidence 346888888763 22233233433367889999977 46666655444568889887775 2333 3222 345
Q ss_pred eeEEEECCCCCEE-EEEc-----CEEEEEEcC
Q 047837 91 VECIAFSPDGEHL-VTVG-----GYIYLWNWR 116 (882)
Q Consensus 91 V~~lafspdg~~L-as~~-----~~i~iWd~~ 116 (882)
|....+++++..+ ++.+ +.+..+|..
T Consensus 398 ~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 398 IFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 7777777877644 4433 889999987
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.15 E-value=4.7e+02 Score=29.20 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=46.9
Q ss_pred CCeEEEEeCCceEEEEEcccccccceeeeeecCcc---eeeeecccCCCC-CCCCCcceeeeccCCCcEEEEeeCCCcEE
Q 047837 321 SEKLVVVYGDHSLYVWDIHDVNEATRCCVLVSHSA---CIWDIKNLGCEN-MHDPSVSCVARGCTGGVSFSTCSADGTIR 396 (882)
Q Consensus 321 ~~~ll~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~-~h~~~v~~~~~~~~~~~~l~t~~~dg~i~ 396 (882)
+..++++-.||.+.-.+.+...... .....+.+ .+..+ |..... .....|.++.+ +..++++-+.|.++|
T Consensus 171 ~~~liVsL~DGGLLrL~r~~~~d~~--~~~Fnd~s~l~SL~~l-f~~~~~~~~~~~Is~~~~---~~~fLftL~~Dh~LR 244 (729)
T 3f7f_A 171 PQFSVVFLEDGGLLGLKKVDGVHYE--PLLFNDNSYLKCLTRF-FSRSSKSDYDSVISCKLF---HERYLIVLTQNCHLK 244 (729)
T ss_dssp SSBEEEEETTSCEECCEESSSSCEE--CCCCCCCGGGGGGSTT-CCTTCSSCCCCEEEEEEE---TTTEEEEEETTCEEE
T ss_pred CCeEEEEEcCCCEEEEEeccCCCcc--eeeecCCchhhhhHHh-hcCCCCCCcCceEEEecc---CCcEEEEEEcCCeEE
Confidence 4448888888877665544332111 01111111 12222 111111 12223554443 467999999999999
Q ss_pred EEecCCCceeeeccc
Q 047837 397 LWDLALQSELSKDVL 411 (882)
Q Consensus 397 vwd~~~~~~~~~~~~ 411 (882)
+|++.+++.+.....
T Consensus 245 iWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 245 IWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEETTTTEEEEEEET
T ss_pred EEEcCCCceEEeecc
Confidence 999999987765444
No 379
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.44 E-value=2.1e+02 Score=22.90 Aligned_cols=61 Identities=7% Similarity=0.024 Sum_probs=29.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCceEEEEEeccCCCCcEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 047837 580 MEVVITVGQDKKINSFSIAAGKLIRSFKQAKDFGDPMKVTVDPSGSYLVCSYSNKSICLYDFIS 643 (882)
Q Consensus 580 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~i~iwd~~~ 643 (882)
+.+.+.-..||.+.+|+...+..+..-.. ........+.+..+|.+++... ++.+ +|...+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt-~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGT-SGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCC-TTSCSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCc-ccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 44444445555566655422333322210 1112234567777787776543 3333 676544
No 380
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.63 E-value=1.6e+02 Score=23.54 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=14.9
Q ss_pred EEeecCCCeEEEEeCCceEEEEEc
Q 047837 315 ACQFSTSEKLVVVYGDHSLYVWDI 338 (882)
Q Consensus 315 ~~~~s~~~~ll~~~~d~~i~iwd~ 338 (882)
.+.+..+|.|+....++...+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 356667787777665555456643
No 381
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=28.55 E-value=5.9e+02 Score=27.48 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=39.8
Q ss_pred CeEEEeeceEEEEEECCCCceEEEEEecCC-CCCeEEEEEcCCCCEEEEeec------------CCCCeEEEEECCCcee
Q 047837 14 SKCAYVAGCVLVVYDVDSSTQSHLMVSHRM-PKPLCCVAMSRDGRYVAAGES------------GPQPAVLVWDCANLAF 80 (882)
Q Consensus 14 ~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~-~~~I~~va~spdg~~la~g~~------------~~d~~I~vwd~~t~~~ 80 (882)
+.+.+..+..++..|.. ++.+..+..-.. ...-..+..-|+|++|+.+.. --+..|...| .+|+.
T Consensus 218 G~l~~g~G~~i~elD~~-Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeV 295 (571)
T 3elq_A 218 GTFTAVQGQHWYEFDMM-GQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRV 295 (571)
T ss_dssp SCEEEEEBTEEEEECTT-CCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCE
T ss_pred CCEEEecCcEEEEECCC-CcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCE
Confidence 44666667778888976 444443321100 000112667889998876531 0133677778 78888
Q ss_pred eEEee
Q 047837 81 ISELK 85 (882)
Q Consensus 81 ~~~l~ 85 (882)
+....
T Consensus 296 v~eW~ 300 (571)
T 3elq_A 296 VDVWD 300 (571)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76643
No 382
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.72 E-value=5.1e+02 Score=26.14 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=105.6
Q ss_pred EEEEEcCCCcEEEEEcCC------C--ceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccCccc------e
Q 047837 491 FLASGGRDRTIHLYDVKR------N--FDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVETNSA------Y 556 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~------~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~------~ 556 (882)
++++.+.+|.|+--.+.. + ......++ ..+.+..+........|+..+..|.++-+....-... .
T Consensus 9 ~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~ 87 (370)
T 3l6v_A 9 VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGR 87 (370)
T ss_dssp EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCc
Confidence 788888999998765432 1 01112222 3456666665556667777777787666554321111 0
Q ss_pred eeeccceecccCCceEEEEEec---CCCEEEEEeCCCcEEEEEccCCc-------eEEEEEeccCCCCcEEEEECCCCCE
Q 047837 557 KISRRHQQLASQGTVYDMDIDP---TMEVVITVGQDKKINSFSIAAGK-------LIRSFKQAKDFGDPMKVTVDPSGSY 626 (882)
Q Consensus 557 ~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~spdg~~ 626 (882)
.+.. ...+.....|.++..-. ++.+|+.++..|.++.-.+..-. ....+. ....+..+....+...
T Consensus 88 ~i~~-ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~---~~d~lv~v~~~~~~~~ 163 (370)
T 3l6v_A 88 PIIN-WIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD---EGDALVGVALTDGDRD 163 (370)
T ss_dssp EGGG-SCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC---TTCCEEEEEEECSCCE
T ss_pred CHhh-ccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC---CCCEEEEEEEeCCCce
Confidence 0000 00122334565554432 45689999999999988865322 222222 2445555555555567
Q ss_pred EEEEeCCCcEEEEEccC---------CeEEEEEccCCCCeEEEEECC---------------------------------
Q 047837 627 LVCSYSNKSICLYDFIS---------GEMVAKAMGHGEVITGVTFLP--------------------------------- 664 (882)
Q Consensus 627 l~~~~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~s~--------------------------------- 664 (882)
|+..+.+|.+..++... |-..-.+. ....|.++...+
T Consensus 164 i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 164 VLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-------------------------------
T ss_pred EEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 77777888888787643 11111122 234555554443
Q ss_pred --CCCEEEEEeCCCeEEEEeCCC
Q 047837 665 --DCKHIVSVGGDGLQRVKEKYG 685 (882)
Q Consensus 665 --d~~~l~s~~~dg~i~vwd~~~ 685 (882)
++..|++.+..|..+...+..
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGG
T ss_pred ccCCceEEEeeCCCCEEEEEHHH
Confidence 456788889899888877754
No 383
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=25.49 E-value=7.4e+02 Score=27.67 Aligned_cols=178 Identities=7% Similarity=0.003 Sum_probs=92.5
Q ss_pred CCcEEEEEcCCCc-eeEEEeecCCCC-EEEEEEccCCCE-----EEEEeCC---CeEEEEeCccCccc-eeeeccceecc
Q 047837 498 DRTIHLYDVKRNF-DLIESIDDHSAA-VTAVKFTCNGRK-----ILSCSAD---RSLVVRDVVETNSA-YKISRRHQQLA 566 (882)
Q Consensus 498 dg~v~iwd~~~~~-~~~~~~~~h~~~-v~~~~~s~~~~~-----l~s~~~d---g~i~vwd~~~~~~~-~~~~~~~~~~~ 566 (882)
...|+.|.+.+.. +-...+.+.... -.....++++++ +++.+.+ ..+.+.+....... .++....
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 290 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS---- 290 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT----
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC----
Confidence 3678889887642 223334433333 234555666662 4443322 34555565422111 1221111
Q ss_pred cCCceEEEEEecCCCEEEEE----------eCCCcEEEEEccCCc-------eEEEEEeccCCCCcEEEEECCCCCEEEE
Q 047837 567 SQGTVYDMDIDPTMEVVITV----------GQDKKINSFSIAAGK-------LIRSFKQAKDFGDPMKVTVDPSGSYLVC 629 (882)
Q Consensus 567 ~~~~v~~~~~sp~~~~l~~~----------~~d~~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~spdg~~l~~ 629 (882)
. ..+....++.+++.. ...+.|...|+.++. ....+-.+.....+..+.+..+ .++++
T Consensus 291 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 291 ---D-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp ---T-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred ---c-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 1 112344455555532 245678999987642 2233222234456778888876 56677
Q ss_pred EeCCC--cEEEEEccCCe-EEEE-EccC-CCCeEEEEECCCCC-EEEEEeC---CCeEEEEeCC
Q 047837 630 SYSNK--SICLYDFISGE-MVAK-AMGH-GEVITGVTFLPDCK-HIVSVGG---DGLQRVKEKY 684 (882)
Q Consensus 630 ~~~dg--~i~iwd~~~~~-~~~~-~~~h-~~~v~~l~~s~d~~-~l~s~~~---dg~i~vwd~~ 684 (882)
...++ .|+++|+.+++ .+.. +... .+.+..+.+++++. ++++.+. -+.+..+|+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 76676 47778877775 2233 2211 34576667777765 4444432 3467777765
No 384
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=22.59 E-value=2.9e+02 Score=21.88 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=41.3
Q ss_pred CCCCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCCCEEEEeecCCCCeEEEEECCCceeeEEeecccc
Q 047837 10 PDSSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDGRYVAAGESGPQPAVLVWDCANLAFISELKGHLY 89 (882)
Q Consensus 10 pd~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg~~la~g~~~~d~~I~vwd~~t~~~~~~l~~h~~ 89 (882)
+++...+.+..++.+++|| .++.+=. .....+..-..+.+..||.++.... ++ -.||...+. ...
T Consensus 18 ~~~~~~l~~~~dGnlvl~~--~~~~vW~-sn~~~~~~~~~l~l~~dGNLVl~~~---~~-~~~W~S~t~--------~~~ 82 (110)
T 3a0c_A 18 VGPSYRLIMQGDCNFVLYD--SGKPVWA-SNTGGLGSGCRLTLHNNGNLVIYDQ---SN-RVIWQTKTN--------GKE 82 (110)
T ss_dssp ETTTEEEEECTTSCEEEEE--TTEEEEE-CCCTTSCSSCEEEECTTSCEEEECT---TC-CEEEECCCC--------CSS
T ss_pred ECCCEEEEEcCCCcEEEEE--CCEEEEE-CCCCCCCCcEEEEEeCCCCEEEECC---CC-cEEEecCCC--------CCC
Confidence 5566566666677777887 2332211 1111112223567778888777642 22 357875432 122
Q ss_pred ceeEEEECCCCCEEE
Q 047837 90 GVECIAFSPDGEHLV 104 (882)
Q Consensus 90 ~V~~lafspdg~~La 104 (882)
.-..+.+.+||.+++
T Consensus 83 g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 83 DHYVLVLQQDRNVVI 97 (110)
T ss_dssp SCCEEEECTTSCEEE
T ss_pred CCEEEEEeCCccEEE
Confidence 234566777776444
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.97 E-value=5e+02 Score=24.44 Aligned_cols=149 Identities=7% Similarity=-0.035 Sum_probs=79.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeEEEeecCCCCEEEEEEccCCCEEEEEeCCCeEEEEeCccC---ccceeeeccceeccc
Q 047837 491 FLASGGRDRTIHLYDVKRNFDLIESIDDHSAAVTAVKFTCNGRKILSCSADRSLVVRDVVET---NSAYKISRRHQQLAS 567 (882)
Q Consensus 491 ~l~~g~~dg~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~ 567 (882)
.+++.+.+|.|+--....-......+.. .+.+..+........|+..+..|.++-.....- ...-........+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 4556667777765554321000001222 234444444444445666677787666554321 110000001112233
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEccC-------CceEEEEEeccCCCCcEEEEEC-CCCCEEEEEeCCCcEEEE
Q 047837 568 QGTVYDMDIDPTMEVVITVGQDKKINSFSIAA-------GKLIRSFKQAKDFGDPMKVTVD-PSGSYLVCSYSNKSICLY 639 (882)
Q Consensus 568 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~~~~~dg~i~iw 639 (882)
...|.++....++.+|+.++..|.++...+.. |.....+. ..+.+..+... .++..|+..+.+|.+..+
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~---~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP---ENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCC---TTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEEC---CCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 45677664444567788899999999988743 22333332 23455555555 345678888889988888
Q ss_pred EccC
Q 047837 640 DFIS 643 (882)
Q Consensus 640 d~~~ 643 (882)
+...
T Consensus 160 ~~~e 163 (256)
T 1zvt_A 160 PVSD 163 (256)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8754
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.49 E-value=3.1e+02 Score=21.83 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=31.1
Q ss_pred eEEEECCCCCEEEEEc-CEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEEcc
Q 047837 92 ECIAFSPDGEHLVTVG-GYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWTIG 159 (882)
Q Consensus 92 ~~lafspdg~~Las~~-~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd~~ 159 (882)
..+.+..||.+++.-. ..-.+|...+.. . ..-..+.+..+|.+++....+.+ +|.-.
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~--------~--~~~~~l~l~~dGNLVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSG--------R--GQHCFMRLGHSGELDITDDRLNT-VFVSN 83 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTT--------S--CSSCEEEECTTSCEEEECTTSCE-EEECS
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCccc--------C--CcCEEEEEeCCCcEEEECCCCCE-EEECC
Confidence 4456666776665543 233466543321 0 12245677788887776555543 67643
No 387
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.48 E-value=3.2e+02 Score=21.68 Aligned_cols=54 Identities=4% Similarity=0.055 Sum_probs=29.1
Q ss_pred eEEEECCCCCEEEEEcCEEEEEEcCcceeeeeeecCCcccceeEEEEccCCCEEEEECCCcEEEEE
Q 047837 92 ECIAFSPDGEHLVTVGGYIYLWNWRSAMLVMKLKANSSCSAITSACFSSDAKFIVTAGKKHLKFWT 157 (882)
Q Consensus 92 ~~lafspdg~~Las~~~~i~iWd~~~g~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~~~~i~iwd 157 (882)
..+.+..||.+++.-.+. +|...+... ..-..+.+..+|++++...++...+|.
T Consensus 22 ~~L~~q~dGnLvl~~~~~--vW~snt~~~----------~~~~~l~l~~dGNLVl~~~~~~~~vW~ 75 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNEAG--GFQSNTHGR----------GVDCTLRLNNRGQLEIHSANSNTPVWV 75 (111)
T ss_dssp EEEEECTTSCEEEECSSC--CEECCCTTS----------CSSCEEEECTTSCEEEECSSCSSCSEE
T ss_pred EEEEEccCCeEEEECCCC--EEECCcccC----------CcCEEEEEcCCCcEEEEeCCCCEEEEE
Confidence 456667777776643322 776443210 112356677777776654444434564
No 388
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=20.43 E-value=2.1e+02 Score=24.34 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=32.7
Q ss_pred CCCeEEEeeceEEEEEECCCCceEEEEEecCCCCCeEEEEEcCCC
Q 047837 12 SSSKCAYVAGCVLVVYDVDSSTQSHLMVSHRMPKPLCCVAMSRDG 56 (882)
Q Consensus 12 ~~~~~~~~~~~~v~vwd~~~~~~~~~l~~h~~~~~I~~va~spdg 56 (882)
|+..++...++.|.+.|..+...+..++-+. |.-.+..++.
T Consensus 54 gq~~~L~v~~~tlrLvD~~tk~~L~~~pI~~----I~f~~~gr~~ 94 (148)
T 3d8d_A 54 GKDLLLQLEDETLKLVEPQSQALLHAQPIIS----IRVWGVGRDS 94 (148)
T ss_dssp TCEEEEEEETTEEEEECTTTCCEEEEEEGGG----CCEEEECCCC
T ss_pred CceEEEEEcCCeEEEecCCCCceEEEeeEEE----EEEEeCCCCC
Confidence 6778999999999999999999888877665 6555555544
Done!